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from importlib import import_module
from itertools import chain
import json
from os import path, getcwd
import os
import subprocess
import inspect
from ..fileop import IOHelper
from ...util import Utility
from ..exechelper import func_exec_run
# import_module can't load the following modules in the NGINX server
# whi... | mainulhossain/phenoproc | app/biowl/dsl/func_resolver.py | Python | mit | 14,095 | [
"BWA",
"Galaxy",
"pysam"
] | fb7e008b6f77ce6ba8ba3c1402e7926ce6cd37a9d848020a302170cdd0534a30 |
from rdkit import Chem
from rdkit.Chem import AllChem
from rdkit import DataStructs
from sklearn.naive_bayes import BernoulliNB
import cPickle
import glob
import os
import sys
from pylab import save
import numpy as np
import pymysql
import math
import getpass
from multiprocessing import Pool
import multiprocessing
impo... | lhm30/PIDGIN | ad_analysis_all.py | Python | mit | 3,415 | [
"RDKit"
] | bb9cad0a2c715473d15ac08b0e1e9e23c3bc4d709eb3b24cd81ffc7618bfc847 |
#!/usr/bin/env python
##########################################################################
#
# Generation of boundary representation from arbitrary geophysical
# fields and initialisation for anisotropic, unstructured meshing.
#
# Copyright (C) 2011-2013 Dr Adam S. Candy, adam.candy@imperial.ac.uk
#
# ... | adamcandy/QGIS-Meshing | extras/contouring/rtopo_mask_to_stereographic.py | Python | lgpl-2.1 | 23,934 | [
"NetCDF"
] | 75bf38902fd1bdddee877092a9a131239a1ef88faeb441e78b8624d5166f3d5b |
__RCSID__ = "$Id$"
from DIRAC import gLogger, gConfig, S_OK
from DIRAC.Core.Base.AgentModule import AgentModule
from DIRAC.StorageManagementSystem.Client.StorageManagerClient import StorageManagerClient
from DIRAC.Resources.Storage.StorageElement import Storag... | fstagni/DIRAC | StorageManagementSystem/Agent/StageRequestAgent.py | Python | gpl-3.0 | 22,625 | [
"DIRAC"
] | 51b3edfddf250f68025352613069cd616c0cd056ab127d30570a708aa7406405 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements representations of slabs and surfaces, as well as
algorithms for generating them. If you use this module, please consider
citing the following work::
R. Tran, Z. Xu, B. Radhakrishnan, D. Winston... | vorwerkc/pymatgen | pymatgen/core/surface.py | Python | mit | 86,299 | [
"pymatgen"
] | c2fa975de364a2c842a3fdb907cbd5561b77dfeea6440ee0f2878073493f7cb8 |
from kmeans import *
import sys
import matplotlib.pyplot as plt
plt.ion()
if sys.version_info.major == 3:
raw_input = input
def mogEM(x, K, iters, randConst=1, minVary=0):
"""
Fits a Mixture of K Diagonal Gaussians on x.
Inputs:
x: data with one data vector in each column.
K: Number of G... | ouyangyike/Machine-Learning-and-Data-Mining | Mixture of Gaussian/mogEM.py | Python | mit | 7,998 | [
"Gaussian"
] | 9739a58ca0b32be8660ddd8f5464c26777b6ee11a17e348eccf5952db5c600d5 |
#!/usr/bin/python
# Copyright 2017 Google Inc.
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': '1.1',
'status': ['preview'],
... | valentin-krasontovitsch/ansible | lib/ansible/modules/cloud/google/gcp_healthcheck.py | Python | gpl-3.0 | 15,347 | [
"VisIt"
] | 865a40a33e57d5d780df8925b555c4c9c50a7e82be1b0611de684e6d485eeba4 |
##############################################################################
# adaptiveMD: A Python Framework to Run Adaptive Molecular Dynamics (MD)
# Simulations on HPC Resources
# Copyright 2017 FU Berlin and the Authors
#
# Authors: Jan-Hendrik Prinz
# Contributors:
#
# `adaptiveMD` is free software: ... | markovmodel/adaptivemd | adaptivemd/analysis/__init__.py | Python | lgpl-2.1 | 1,099 | [
"MDTraj"
] | 3a85c4ea595c622d84e50659cad62b4fefbd30949d739da72c966a93222fcc61 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import pytest
@pytest.mark.skip(reason="This is a long test")
def test_ccsdtqp():
"""Test CCSDTQP on Ne using RHF/cc-pVDZ orbitals"""
import forte.proc.scc as scc
import forte
import psi4
ref_energy = -128.679025538 # from Evangelista, J. Chem. Phy... | evangelistalab/forte | tests/pytest/sparse_ci/srcc/test_ccsdtqp.py | Python | lgpl-3.0 | 957 | [
"Psi4"
] | b1e62eb3a29943beb28fc81cf5a268051ac37df25a4bd41f4fa4dbb3a8d608a7 |
import os
import re
import jinja2
import subprocess
import markdown
import markdown_include
import MooseDocs
from MooseDocs.html2latex import Translator, BasicExtension, MooseExtension
def latex_options(parser, subparser):
"""
Command line arguments for "latex" command.
Args:
parser: The main argparse pars... | vityurkiv/Ox | python/MooseDocs/commands/latex.py | Python | lgpl-2.1 | 6,417 | [
"MOOSE"
] | 9f814edf9536fe7471463bfca867d7d906d39e51c72c98ee137aa247d62ebe72 |
#!/usr/bin/env python
#----------------------------------------------------------------------------
#
# Monte Carlo simulation of the kinematic extraction with pPXF. It is useful
# to determine the desired value for the BIAS keyword of the pPXF procedure.
# This procedure generates a plot similar (but not identical) to... | moustakas/impy | lib/ppxf/ppxf_simulation_example.py | Python | gpl-2.0 | 6,151 | [
"Galaxy",
"Gaussian"
] | b182a81625797c6d9a6f3004b0034beaefad44e9c3fe82cd7dbbe1d42253a020 |
import copy
from django.http.response import HttpResponse
from django.utils.translation import ugettext as _
from corehq.apps.groups.models import Group
from corehq.apps.reports.cache import request_cache
from corehq.apps.reports.standard.cases.basic import CaseListReport
from corehq.apps.api.es import CaseES
from cor... | SEL-Columbia/commcare-hq | custom/bihar/reports/mch_reports.py | Python | bsd-3-clause | 21,503 | [
"VisIt"
] | 751765acc1932a72a7ec47976cbadf72a5bd2433f9db8d053134858ae7488e88 |
"""
Plots gaussian mixture model
"""
import numpy
from scipy.stats import gumbel_r
from scipy.stats import norm
from numpy import random
import os,site,sys
from math import *
base_path = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
base_path="%s/src"%base_path
for directory_name in os.listdir(base_path... | idoerg/BOA | scripts/plot_mixture.py | Python | gpl-3.0 | 2,262 | [
"Gaussian"
] | 100deafd87e6cd3d188c2d705bce7aa3b5141f1d304ce81d7595f772fbce6d4b |
import os
import re
from setuptools import setup, find_packages
_here = os.path.dirname(__file__)
_init = os.path.join(_here, 'van', 'contactology', '__init__.py')
_init = open(_init, 'r').read()
VERSION = re.search(r'^__version__ = "(.*)"', _init, re.MULTILINE).group(1)
README = open(os.path.join(_here, 'README.txt... | jinty/van.contactology | setup.py | Python | bsd-3-clause | 836 | [
"Brian"
] | 84f5342265eb29c4d297586cbf7dfec5c842e8ca5a756d8a730ba6810b89e5f0 |
#! /usr/bin/env python
#
# Copyright (C) 2015-2016 Rich Lewis <rl403@cam.ac.uk>
# License: 3-clause BSD
"""
## skchem.core.mol
Defining molecules in scikit-chem.
"""
import copy
import rdkit.Chem
import rdkit.Chem.inchi
from rdkit.Chem import AddHs, RemoveHs
from rdkit.Chem.rdMolDescriptors import CalcMolFormula, C... | richlewis42/scikit-chem | skchem/core/mol.py | Python | bsd-3-clause | 13,323 | [
"RDKit"
] | 37387b57993e997498241edebcdeacf3a64319db7f5be5a117c77fb528f527e1 |
import numpy
import vtk
from .raw import points as to_vtk_points
from .raw import vertices as to_vtk_vertices
from .raw import polygons as to_vtk_polygons
from numpy2vtk.exceptions import Numpy2VtkFormatException
def mesh(points, polys, z_index=0):
"""
Returns the VTK-representation of a mesh that is build by ... | selaux/numpy2vtk | numpy2vtk/data/mesh.py | Python | lgpl-3.0 | 1,903 | [
"VTK"
] | 8b15bc56b8f5b606b9ce4a7e0239933ebe0ae413244274f0dda7e3d18c893cdf |
## Copyright (c) 2001-2009, Scott D. Peckham
## November 2009 (converted from IDL)
#-----------------------------------------------------------------------
# Notes: Use the random midpoint displacement method to create
# a fractal surface/landscape (due to Mandelbrot).
# This can be used as initial s... | mdpiper/topoflow | topoflow/utils/midpoints.py | Python | mit | 10,558 | [
"Gaussian"
] | 2d7d6039cfd62627390bf67f236c07a75df9627c187b0f72ca6b6eb9ebbf866c |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
from setuptools import setup
if os.path.exists('README.rst'):
long_description = open('README.rst').read()
else:
long_description = '''MolVS is a molecule validation and standardization tool, written in Python using the RDKit
chemistry framework. Buildi... | mcs07/MolVS | setup.py | Python | mit | 1,917 | [
"RDKit"
] | f1db5efe271aa869794756e966b0055f977a32f2aad9c22baa6f2ff96158695b |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""
Ansible module to configure .deb packages.
(c) 2014, Brian Coca <briancoca+ansible@gmail.com>
This file is part of Ansible
Ansible is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Softwa... | jburwell/ansible-modules-extras | system/debconf.py | Python | gpl-3.0 | 5,359 | [
"Brian"
] | d105384f4beeeb5261f0d92a777af550f97f56485f50d3cbc909488c3d4db55d |
# -*- coding: utf-8 -*-
"""
Created on Fri Sep 30 15:20:45 2011
@author: josef
"""
from statsmodels.compat.python import lrange
import numpy as np
from scipy import stats
from statsmodels.sandbox.tools.mctools import StatTestMC
from statsmodels.stats.diagnostic import acorr_ljungbox
from statsmodels.tsa.stattools impo... | statsmodels/statsmodels | statsmodels/sandbox/tools/try_mctools.py | Python | bsd-3-clause | 1,941 | [
"ADF"
] | 31730f507fe3c829c3a75208a053d9bb4090af8f8b5f8776ce5088a4542067cd |
# Copyright 2014 The Oppia Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... | souravbadami/oppia | core/controllers/reader_test.py | Python | apache-2.0 | 110,025 | [
"VisIt"
] | 8af0058f6c2fb29c1d4f3d824724eb05bd24ae3caf60e43ae125e6e10c0b3cf4 |
import numpy as np
import pytest
from elfi.methods import mcmc
# construct a covariance matrix and calculate the precision matrix
n = 5
true_cov = np.random.rand(n, n) * 0.5
true_cov += true_cov.T
true_cov += n * np.eye(n)
prec = np.linalg.inv(true_cov)
# log multivariate Gaussian pdf
def log_pdf(x):
return -0.... | elfi-dev/elfi | tests/unit/test_mcmc.py | Python | bsd-3-clause | 2,150 | [
"Gaussian"
] | 9c07e093051141ba531774a82b8764565cb4f180b8ed94ee77a4c80b788da968 |
#!/usr/bin/env python
"""
Copyright (c) 2006-2014 sqlmap developers (http://sqlmap.org/)
See the file 'doc/COPYING' for copying permission
"""
class PRIORITY:
LOWEST = -100
LOWER = -50
LOW = -10
NORMAL = 0
HIGH = 10
HIGHER = 50
HIGHEST = 100
class SORT_ORDER:
FIRST = 0
SECOND = 1
... | Snifer/BurpSuite-Plugins | Sqlmap/lib/core/enums.py | Python | gpl-2.0 | 9,285 | [
"Galaxy"
] | e0176cb8cc94c983790c92f89750afdb9a58aa23d7ea806a208337b4bd607bd3 |
""" # lint-amnesty, pylint: disable=django-not-configured
Instructor Dashboard Views
"""
import datetime
import logging
import uuid
from functools import reduce
from unittest.mock import patch
import pytz
from django.conf import settings
from django.contrib.auth.decorators import login_required
from django.http imp... | stvstnfrd/edx-platform | lms/djangoapps/instructor/views/instructor_dashboard.py | Python | agpl-3.0 | 34,219 | [
"VisIt"
] | aa2825c6bfe771cb635b28939d8c195127c1abb928b6219d9453e358273f96b6 |
from __future__ import absolute_import, print_function
import BaseHTTPServer
import SimpleHTTPServer
import base64
import io
import json
import threading
import time
import hashlib
import os
import sys
import urllib2
from decimal import Decimal
from optparse import OptionParser
from twisted.internet import reactor
... | chris-belcher/joinmarket-clientserver | scripts/obwatch/ob-watcher.py | Python | gpl-3.0 | 18,029 | [
"VisIt"
] | 06f035fc4071fd4e2e10510d164281cc7e57667e8b4cb6bba68f468930b5ba55 |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-dialogflow-cx | tests/unit/gapic/dialogflowcx_v3beta1/test_versions.py | Python | apache-2.0 | 110,374 | [
"Octopus"
] | 445a1df933e0ab02653e1d2a0048097a6f3be9b30ce12fc6673f8f86b21dbb31 |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/orca/example/learn/tf/image_segmentation/image_segmentation.py | Python | apache-2.0 | 9,307 | [
"ORCA"
] | 2a3f7571a2d5c841dbdc54fd89b840c469cdf55e6332b1d121e37fe5da3a8c4f |
# -*- coding: utf-8 -*-
from dp_tornado.engine.schema import Table as dpTable
from dp_tornado.engine.schema import Attribute as dpAttribute
class ArticlesSchema(dpTable):
__table_name__ = 'articles'
article_id = dpAttribute.field(dpAttribute.DataType.INT, ai=True, pk=True, nn=True, un=True, comment='Articl... | why2pac/dp-tornado | dp_tornado/engine/template/bbs/schema/bbs/articles.py | Python | mit | 2,558 | [
"Amber"
] | fe0e7d505a293ce95e3377cfeab97462d04477053907c7f7e6f00dc9e7e63f63 |
# Copyright (C) 2013 by Ben Morris (ben@bendmorris.com)
# Based on Bio.Nexus, copyright 2005-2008 by Frank Kauff & Cymon J. Cox
# and Bio.Phylo.Newick, copyright 2009 by Eric Talevich.
# All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file tha... | Ambuj-UF/ConCat-1.0 | src/Utils/Bio/Phylo/CDAOIO.py | Python | gpl-2.0 | 15,435 | [
"Biopython"
] | 29ce6cf951f032d9773453952e36ba1548b15eb38cf7cc0dd3137c7b1b40456c |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2008, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | anksp21/Community-Zenpacks | ZenPacks.community.NetWare/setup.py | Python | gpl-2.0 | 3,270 | [
"VisIt"
] | 1f9703346069782f00002e09b059738c190ed066a68c2577e50e58b2250e37b4 |
# Copyright 2006-2012 Mark Diekhans
# this module is tested by pycbio/src/progs/gbff/gbffGenesToGenePred
from pycbio.sys import PycbioException
from Bio import SeqFeature
class GbffExcept(PycbioException):
pass
def featHaveQual(feat, key):
"does a feature have a qualifier?"
return (key in feat.qualifier... | ifiddes/pycbio | pycbio/ncbi/gbff.py | Python | bsd-3-clause | 6,284 | [
"Biopython"
] | f9a081b8fecb47b270c4df65ca46323adbf186f9988db5864d36c5d239d947c7 |
"""Finds the FOF groups changed after Balrog-injection and unchanged after Balrog-injection.
Author: Brian Yanny"""
#!/usr/bin/env python
import sys
import csv
if(len(sys.argv) != 3):
sys.exit("Usage: python par.py matchlist outprefixname")
fn=sys.argv[1]
outprefix=sys.argv[2]
gidlist={}
gidsizelist={}
fofidli... | sweverett/Balrog-GalSim | plots/ms_par.py | Python | mit | 2,777 | [
"Brian"
] | 279a505a7afbf4398d35f58726a9f19d4850bad8f922d1c231c907c10f05af0f |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''Views tests for the OSF.'''
from __future__ import absolute_import
import unittest
import json
import datetime as dt
import mock
import httplib as http
import math
import time
from nose.tools import * # noqa PEP8 asserts
from tests.test_features import requires_search... | sbt9uc/osf.io | tests/test_views.py | Python | apache-2.0 | 181,352 | [
"Brian"
] | c7103b9ead7aeb45849934510dfd22e337856511c452ceca25984216689ad266 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publi... | pmghalvorsen/gramps_branch | gramps/plugins/tool/rebuild.py | Python | gpl-2.0 | 3,667 | [
"Brian"
] | 7a2b9863da1ebe2017536b443f784fa1c1b1d78936c38d4015d5fea89decc58c |
import os
import time
import string
import random
from django.core.urlresolvers import reverse
from django.contrib.staticfiles.testing import StaticLiveServerTestCase
from django.contrib.auth.models import User, Group
from django.contrib.staticfiles.templatetags.staticfiles import static
from splinter import Browser
... | erikiado/jp2_online | captura/test_views.py | Python | mit | 47,333 | [
"VisIt"
] | 901fbced32a6caa1668976090ea97ac24170f6a96cdbde0ee1197eb801b6ccde |
from asap3 import *
from ase.md.verlet import VelocityVerlet
from ase.lattice.cubic import FaceCenteredCubic
from asap3.io.trajectory import *
from numpy import *
import sys, os, time
from asap3.testtools import ReportTest
from asap3.mpi import world
debug = 0
if debug == 1:
DebugOutput("makeverlet%d.log", nomaste... | auag92/n2dm | Asap-3.8.4/Test/parallel/parallelTrajectories.py | Python | mit | 2,781 | [
"ASE"
] | fe0153414237f3a171458589d3ac4122befd80d3f4b16dd8b485b14aadaf0722 |
# -*- coding: utf-8 -*-
"""
Created on Tue Oct 31 08:10:06 2017
@author: a002028
"""
import os
import sys
current_path = os.path.dirname(os.path.realpath(__file__))[:-4]
if current_path not in sys.path:
sys.path.append(current_path)
import pandas as pd
import numpy as np
import time
import pickle
import utils
i... | ekostat/ekostat_calculator | core/data_handlers.py | Python | mit | 96,099 | [
"NetCDF",
"VisIt"
] | 0e6fc72b41e21f56c261e2a006d620ad16de87786b6a8485d952eb46d26126b7 |
# Copyright (C) 2015 Philipp Baumgaertel
# All rights reserved.
#
# This software may be modified and distributed under the terms
# of the BSD license. See the LICENSE.txt file for details.
from itertools import combinations
import numpy as np
from scipy.misc import derivative
from skgpuppy.FFNI import PropagateMome... | snphbaum/scikit-gpuppy | skgpuppy/TaylorPropagation.py | Python | bsd-3-clause | 8,018 | [
"Gaussian"
] | a8893b444df57cc32119de9387cb7e4020a47c7b184f2a5240e4aecf780d8467 |
import json
import os
import urllib2
filename = "../../AP_ITEM_DATASET/5.11/NORMAL_5X5/NA.json"
base_match_url = "https://na.api.pvp.net/api/lol/na/v2.2/match/"
api_key = "?api_key=72ed6f93-1e5d-47b3-ae92-8c4657887887"
class Item:
def __init__(self, item_name, id, pre_work):
self.__item_name = item_name
... | drood1/Riot_API_Challenge_2 | API_Challenge_2/Program.py | Python | mit | 3,120 | [
"CRYSTAL"
] | fea44355b18b07df8ba159fafa8658860e973d98cd039e699e9f3ea80575543d |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | capoe/espressopp.soap | src/tools/analyse.py | Python | gpl-3.0 | 2,814 | [
"ESPResSo"
] | e5b3b6a103dfa484079f141e9e1e9a112117c855cf5685a497e24c64434ed078 |
import os
BASE_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
SECRET_KEY = os.environ.get('OH_SECRET', 'DEFAULT COOKIE SECRET FOR DEVELOPING')
DEBUG = bool(os.environ.get('OH_DEBUG', False))
ALLOWED_HOSTS = ['*']
INSTALLED_APPS = (
'django.contrib.admin',
'django.contrib.auth',
'django.... | acgx/ooi-hack | ooi2h/settings.py | Python | gpl-2.0 | 2,812 | [
"MOE"
] | a6c48221788630f621a09059dd6b23bf89b6c7634382a7a4953dabeb229a142e |
#!/usr/bin/env python
import os
from ase.io import read
from ase.neb import NEB
from ase.calculators.turbomole import Turbomole
from ase.optimize import QuasiNewton
initial = read('initial.coord')
final = read('final.coord')
os.system('rm -f coord; cp initial.coord coord')
# Make a band consisting of 5 configs:
con... | slabanja/ase | doc/ase/calculators/turbomole_ex2_diffuse_usingNEB.py | Python | gpl-2.0 | 694 | [
"ASE",
"TURBOMOLE"
] | 9b6e1efafdfd59e2f7e1266073e05e3e402a9eb241a38a38d06f89f8b5551959 |
#
# Copyright (C) 2001 greg Landrum
#
# unit testing code for the composite model COM server
from rdkit import RDConfig
import unittest
from rdkit.ML.Composite import Composite
from win32com.client import Dispatch
from Numeric import *
class TestCase(unittest.TestCase):
def setUp(self):
print '\n%s: '%self.sh... | rdkit/rdkit-orig | rdkit/ML/Composite/UnitTestCOMServer.py | Python | bsd-3-clause | 2,592 | [
"RDKit"
] | 0fd79f6de4be656fdda1f227ecf37b8af1ea35f5af4c8756a0444e28ff8afaa0 |
#!/usr/bin/env python
""" Generate The Corpus Cloud with Page Elements, to be Styled """
import jinja2
import arrow
corpus = {
"5Cars": "http://5cars.world",
"Amethyst Grills": "http://amethystgrills.com/",
"Ascension Symptoms": "http://ascension.fyi",
"Astral Seed": "http://trinitysou... | trinitysoulstars/nino.movie | ninogenerator.py | Python | apache-2.0 | 9,332 | [
"CRYSTAL"
] | 67e802b32eae12a3f233baeecbd9fbc58feac0b7cb7222c3a04e5481beba9964 |
"""
CLI options class for comictagger app
"""
"""
Copyright 2012-2014 Anthony Beville
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required ... | 2mny/mylar | lib/comictaggerlib/options.py | Python | gpl-3.0 | 14,932 | [
"VisIt"
] | 8140efcb08848549444ffb1a2d32558b4bda4c681de0e8f3c645aca71dfe00f2 |
# GromacsWrapper: xpm.py
# Copyright (c) 2012 Oliver Beckstein <orbeckst@gmail.com>
# Released under the GNU Public License 3 (or higher, your choice)
# See the file COPYING for details.
"""
:mod:`gromacs.fileformats.convert` --- converting entries of tables
=============================================================... | pslacerda/GromacsWrapper | gromacs/fileformats/convert.py | Python | gpl-3.0 | 7,997 | [
"Gromacs"
] | bcd13cdc0fe07c6479b7133fefc8a9fb98caeba2bd89cfddc95014576415ba71 |
# uk.po
val = {"" : "Project-Id-Version: sheltermanager\nReport-Msgid-Bugs-To: FULL NAME <EMAIL@ADDRESS>\nPOT-Creation-Date: 2013-01-24 10:55+0000\nPO-Revision-Date: 2011-10-10 12:35+0000\nLast-Translator: Asalle Kim <Asaly12@ukr.net>\nLanguage-Team: Ukrainian <uk@li.org>\nMIME-Version: 1.0\nContent-Type: text/plain; ... | aubzen/sheltermanager | src/locale/locale_uk.py | Python | gpl-3.0 | 80,712 | [
"Amber",
"VisIt"
] | 4b3fbabcbe333f9e684168a54ad7df10192804bb8246b9ee524190cf33185759 |
#------------------------------------------------------------------------------
# pycparser: c-to-c.py
#
# Example of using pycparser.c_generator, serving as a simplistic translator
# from C to AST and back to C.
#
# Copyright (C) 2008-2015, Eli Bendersky
# License: BSD
#------------------------------------------------... | johncsnyder/SwiftKitten | pycparser/examples/c-to-c.py | Python | mit | 1,578 | [
"VisIt"
] | bd9958ed1a37df64ed6ebfc4d862ef8880babcff2bd1906394c5f7a0f319cd2b |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/lib/gto/test/test_int1e_pbc.py | Python | apache-2.0 | 1,979 | [
"PySCF"
] | aaccecc4751f02fdae70a538625d854b59d761b0974b4e8b03ca5c0710409dfb |
# -*- coding: utf-8 -*-
#
# one-neuron-with-noise.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the L... | BlueBrain/NEST | pynest/examples/one-neuron-with-noise.py | Python | gpl-2.0 | 1,197 | [
"NEURON"
] | 760c9303e39bc0b21c41993984f4ae8fc6b2f5353a2d5a260f0cdae48506163a |
from __future__ import print_function
import sys
sys.path.insert(1,"../../../")
import h2o
from tests import pyunit_utils
from h2o.estimators.glm import H2OGeneralizedLinearEstimator
def glm_solvers():
predictors = ["displacement","power","weight","acceleration","year"]
for solver in ["AUTO", "IRLSM", "L_BFGS", ... | nilbody/h2o-3 | h2o-py/tests/testdir_algos/glm/pyunit_solvers_glm.py | Python | apache-2.0 | 1,311 | [
"Gaussian"
] | b08c41f8cebaa495f1db87c44fb0fbdfcea506c2aaf6316f52de6ebb1dc45a35 |
from __future__ import (absolute_import, division, print_function)
import unittest
from mantid.simpleapi import logger
import AbinsModules
class AbinsLoadCRYSTALTest(unittest.TestCase, AbinsModules.GeneralLoadDFTTester):
def tearDown(self):
AbinsModules.AbinsTestHelpers.remove_output_files(list_of_names=... | dymkowsk/mantid | scripts/test/AbinsLoadCRYSTALTest.py | Python | gpl-3.0 | 2,060 | [
"CRYSTAL"
] | f00c4c4f82168b039f02682c26f8f153cc727c2bceea664c0779704af0fd6715 |
# -*- coding: utf-8 -*-
# Vahid Moosavi 2015 08 08 10:50 am
#sevamoo@gmail.com
#Chair For Computer Aided Architectural Design, ETH Zurich
# Future Cities Lab
#www.vahidmoosavi.com
import numpy as np
from matplotlib import pyplot as plt
import matplotlib.gridspec as gridspec
import numexpr as ne
from time import tim... | shawngraham/SOMPY | sompy.py | Python | mit | 50,591 | [
"Gaussian"
] | 053265c23bd6f35840b0aebbd269efeaae082b10fc9391ffe541692a91e35a63 |
# Copyright (c) 2007 The Regents of The University of Michigan
# Copyright (c) 2010 The Hewlett-Packard Development Company
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met: redistributions of sou... | danielpalomino/gem5 | src/python/m5/stats/__init__.py | Python | bsd-3-clause | 4,670 | [
"VisIt"
] | 1a494c58f7d60213484a7b986181781948db319be47f5763d9844e1483f1ad6b |
"""Class for making requests to a ComponentMonitoring Service."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
from DIRAC.Core.Base.Client import Client, createClient
@createClient("Framework/ComponentMonitoring")
class ComponentMoni... | ic-hep/DIRAC | src/DIRAC/FrameworkSystem/Client/ComponentMonitoringClient.py | Python | gpl-3.0 | 552 | [
"DIRAC"
] | b5463e068314be044d8b7518f2317ee201872bf317e949a1e177ba98f228aa86 |
""" DIRAC.DataManagementSystem.private package """
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id"
| yujikato/DIRAC | src/DIRAC/DataManagementSystem/private/__init__.py | Python | gpl-3.0 | 179 | [
"DIRAC"
] | 04eb561ae4ac83c0468142c49efe9a7d2da356c509a81854717fd895d6247765 |
#!/usr/bin/env python
#########################################################################################
#
# Spinal Cord Automatic Detection
#
# ---------------------------------------------------------------------------------------
# Copyright (c) 2015 Polytechnique Montreal <www.neuro.polymtl.ca>
# Authors: Be... | 3324fr/spinalcordtoolbox | dev/sct_detect_spinalcord/sct_detect_spinalcord.py | Python | mit | 23,339 | [
"Gaussian"
] | 6ee3283e49f1646bb3a5bd3e9f8c4a48414fc28d9ee8ea90008279ebfe89a254 |
""" drivers/__init__.py
@copyright: (C) 2012-2017 by D. Brian Kimmel
The following terms apply to all files associated
with the software unless explicitly disclaimed in individual files.
The authors hereby grant permission to use, copy, modify, distribute,
and license this software and its documentation for any pu... | DBrianKimmel/PyHouse | Project/src/Modules/Core/Drivers/__init__.py | Python | mit | 2,040 | [
"Brian"
] | 77b3a299f5f7f0b62aff3fe0732b358e1bb8fe62d7387fa3b25e1318d27f96fb |
"""
Copyright (C) 2004-2015 Pivotal Software, Inc. All rights reserved.
This program and the accompanying materials are made available under
the terms of the under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
... | rvs/gpdb | src/test/tinc/tincrepo/mpp/models/test/sql_related/test_sql_concurrency_test_case.py | Python | apache-2.0 | 2,523 | [
"ORCA"
] | b627892c614a930a9a87d4ca3f460867ca878ac0f68714b7764f735d01479a56 |
#!/usr/bin/env python
"""
ezgrid.py
Functions for generating ROMS grid files
Copyright (c)2017 University of Hawaii under the BSD-License.
"""
import numpy as np
from datetime import datetime
import netCDF4
import seapy
from collections import namedtuple
def create_grid(grid_file, lat, lon):
"""
Creat... | dalepartridge/seapy | roms/ezgrid.py | Python | mit | 10,073 | [
"NetCDF"
] | 21a72df0957f910625cdb8c9c2b856404465e70c48aab54db15c7c45f7b3881e |
from handlers.base import BaseHandler
from tornado import gen
import momoko
import tornado.web
import logging
logger = logging.getLogger('kisspy.' + __name__)
MAX_ADMIN_UID=2
from models import A,B,C,User, Link, Visit, Config
from settings import MEDIA_ROOT
import os
import time
import forms
class BaseAdminMixin(o... | kisspy/abcms | handlers/admin.py | Python | mit | 14,043 | [
"VisIt"
] | 12ca4b98af62cc99e9dcad52202c66ddfe478a574672254eb69d9318a18a3c12 |
#!/usr/bin/env python3
#
# Copyright 2020 SymbiFlow Authors
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | SymbiFlow/sphinx-verilog-domain | docs/source/conf.py | Python | isc | 3,726 | [
"Amber"
] | 8c77e532f051faa1b3d1f3df4c4d8e99388d4609790c13f058e64e072bcbfe6a |
# Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | aselle/tensorflow | tensorflow/contrib/autograph/converters/directives.py | Python | apache-2.0 | 5,008 | [
"VisIt"
] | d7264e1e86424c49e0d5028fed6220aeac35cf3c77df71b0f1ab24108a2f337a |
#!/usr/bin/env python
"""kmos.gui.forms - GUI forms used by kmos.gui
The classes defined here heavily draw on the interface provided by
python-kiwi.
In the language of underlying MVC (Model-View-Controller) pattern these
classes form the controller. The view is defined through a *.glade XML file
and the models are inst... | mieand/kmos | kmos/gui/forms.py | Python | gpl-3.0 | 52,360 | [
"ASE"
] | b67db1f81649ed60c22861eafb375f0d1960db8a50d15ad672a34b82d1d8d2b3 |
#!/usr/bin/python
# Copyright 2015 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | NetworkDeviceTaxonomy/wifi_taxonomy | tests/wifi_test.py | Python | apache-2.0 | 12,633 | [
"Galaxy"
] | 50e4e27c5bcde4db09d56514685d49ee3a0ebc1192521e397bd9029577c6255d |
"""
Test of the classical LM model for language modelling
"""
from groundhog.datasets import LMIterator
from groundhog.trainer.SGD_momentum import SGD as SGD_m
from groundhog.trainer.SGD import SGD
from groundhog.mainLoop import MainLoop
from groundhog.layers import MultiLayer, \
RecurrentMultiLayer, \
Re... | vseledkin/LV_groundhog | tutorials/DT_RNN_Tut.py | Python | bsd-3-clause | 14,392 | [
"Gaussian"
] | 3d1659a7331977117caebb2ffd87749e9efee429bf035371d7125ddb1296478b |
#!/usr/bin/python3
# -*- coding: utf-8 -*-
'''Pychemqt, Chemical Engineering Process simulator
Copyright (C) 2009-2017, Juan José Gómez Romera <jjgomera@gmail.com>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Softwar... | jjgomera/pychemqt | lib/mEoS/Ethylene.py | Python | gpl-3.0 | 50,303 | [
"Avogadro",
"Jmol"
] | 18f9ef83c6af04f6e9d6b81fdbd0824515ae0cf5d445d700bcddbb53d2991984 |
#!/usr/bin/env python
#pylint: disable=missing-docstring
#################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment #
# #... | backmari/moose | python/chigger/tests/wireframe/points.py | Python | lgpl-2.1 | 1,484 | [
"MOOSE",
"VTK"
] | 1c2904800d01985384e37984b79bcb84227a88e88e02b74cd5206accadd61afd |
# -*- encoding: utf-8 -*-
#
# Copyright © 2012 Robert Weidlich. All Rights Reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# 1. Redistributions of source code must retain the above copyright notice, this
... | funkenstrahlen/django-radioportal | radioportal/models.py | Python | bsd-3-clause | 31,854 | [
"Gaussian"
] | c6a46923459faa2d147231ff13578abae5d51945840fc94d124f83dd2637f88d |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import sys
import re
try:
import simplejson as json
except:
import json
from collections import Counter
import unicodedata
from time import strftime, gmtime
"""
12 December 2014
for each of {body, title}:
the unicodeSignature is the sequence of >ascii codepoin... | usc-isi-i2/dig-unicode | python/unicode-histogram.py | Python | apache-2.0 | 15,156 | [
"FEFF"
] | 731cc7a57790fcbe05f7af19b7250d04369323136c7c3624d648f2cc5be4a1b2 |
import textwrap
import re
# TODO - maybe get Dave's help in coming up with content?
# TODO - fix up room descriptions for typos, etc.
# TODO - put back in (part of) Michael's description of Dave's office
# TODO - entering the stall w/deoderant should print different msg the first time you do that
'''TODO - make sure ... | kkrugler/bitney-adventure | bag_engine.py | Python | apache-2.0 | 45,756 | [
"exciting"
] | 6ddcad05ec59af4420c8ac26d7802e0b3b60e69f1b526ed284069ccb8f94b7ba |
"""
gal v0.01.1
ga-bitbot-revived based on:
ga-bitbot application / system launcher
Copyright 2011 Brian Monkaba
This file is part of ga-bitbot.
ga-bitbot is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Founda... | iamkingmaker/ga-bitbot-revived | gal.py | Python | gpl-3.0 | 12,452 | [
"Brian"
] | 45d4e76379dc4251bf66a2f5a90b4108e0dca863e4789b15967d037e77a9b64c |
import flask
import os
from gevent.pywsgi import WSGIServer
app = flask.Flask(__name__, static_path="/unused")
_basedir = os.path.join("..", os.path.dirname(__file__))
PORT=5009
"""this is a simple server to facilitate developing the docs. by
serving up static files from this server, we avoid the need to use a
symli... | sahat/bokeh | sphinx/docserver.py | Python | bsd-3-clause | 1,178 | [
"VisIt"
] | 8a7fee4e663154bdf1bcfb97ed97eb220d317310429acb08235fa0814ec1cf94 |
# (C) 2013, Markus Wildi, markus.wildi@bluewin.ch
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
#
# This program is distr... | xyficu/rts2 | scripts/rts2saf/unittest/rts2_environment.py | Python | gpl-2.0 | 8,251 | [
"VisIt"
] | dfc47376d62b5bbeeedcca9708316865435729ca70024b962b9761f4c12a2861 |
"""
Copyright (C) 2004-2015 Pivotal Software, Inc. All rights reserved.
This program and the accompanying materials are made available under
the terms of the under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
... | Quikling/gpdb | src/test/tinc/tinctest/models/perf/__init__.py | Python | apache-2.0 | 8,346 | [
"VisIt"
] | f99ad94415b6df04c79f1556f0e906c61b179849eba2ab112d20293e92703048 |
# Author: Samuel Genheden samuel.genheden@gmail.com
"""
Program to make a plummed-common input file for umbrella
sampling of the distance between a membrane and one or more solutes
The atom indices are taken from a Gromacs index file
Examples:
make_plumed.py --solutes AAC1 AAC2
"""
import argparse
from sgenlib i... | SGenheden/Scripts | Membrane/make_plumed.py | Python | mit | 1,220 | [
"Gromacs"
] | b1989872dac71219a4582c5995e04cad01be508ab32354c88fb3c42d7963d32c |
__author__ = 'stephen'
# ===============================================================================
# GLOBAL IMPORTS:
import os,sys
import numpy as np
import argparse
import mdtraj as md
# ===============================================================================
# LOCAL IMPORTS:
HK_DataMiner_Path = os.path.r... | stephenliu1989/HK_DataMiner | hkdataminer/scripts/test_kcenters_assign.py | Python | apache-2.0 | 5,118 | [
"MDTraj"
] | 58f4e5488fa44b3885592fb54aa60856abf2f26b40a4906822d979c4770ad0ae |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2017 Alois Poettker <alois.poettker@gmx.de>
#
# This program is free software; you can redistribute it and/or modi... | dermoth/gramps | gramps/plugins/tool/reorderids.py | Python | gpl-2.0 | 28,505 | [
"Brian"
] | 66dab8357103fc67e343deb8330fe0afd315025144741c8310c032c319835242 |
########################################################################
# File : ComputingElement.py
# Author : Stuart Paterson, A.T.
########################################################################
""" The Computing Element class is a base class for all the various
types CEs. It serves several purpos... | petricm/DIRAC | Resources/Computing/ComputingElement.py | Python | gpl-3.0 | 19,093 | [
"DIRAC"
] | 77c8632615a6dd4c0547d4102bce8ee7da4f37c22997057a522786723904843d |
########################################################################
# File: FTSDB.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2013/04/02 15:13:51
########################################################################
""" :mod: FTSDB
===========
.. module: FTSDB
:synopsis: FTS DB
.. modul... | sposs/DIRAC | DataManagementSystem/DB/FTSDB.py | Python | gpl-3.0 | 21,698 | [
"DIRAC"
] | aec1d785608211712405fb88974bbd21f9af53e3b1cc167bd0c296c43f0f839d |
from setuptools import setup, find_packages
with open('README.md', 'r') as fh:
long_desc = fh.read()
setup(
name='pybbn',
version='3.2.1',
author='Jee Vang',
author_email='vangjee@gmail.com',
packages=find_packages(exclude=('*.tests', '*.tests.*', 'tests.*', 'tests')),
description='Learnin... | vangj/py-bbn | setup.py | Python | apache-2.0 | 1,351 | [
"Gaussian"
] | 55cc4bb1be4dba8f89a550df303e3e7549f4ab2b1022cf0a88e4ce2954949afa |
# ----------------------------------------------------------------------------
# Copyright (c) 2016-2022, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | qiime2/q2-feature-table | q2_feature_table/plugin_setup.py | Python | bsd-3-clause | 26,276 | [
"BLAST"
] | ab4bc46ffeea25ada51abf5d19c0a7a6509580fd807c07e6cbeb99b825daf7f8 |
# Orca
#
# Copyright 2010 Joanmarie Diggs, Mesar Hameed.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# ... | ruibarreira/linuxtrail | usr/lib/python3/dist-packages/orca/laptop_keyboardmap.py | Python | gpl-3.0 | 4,620 | [
"ORCA"
] | 50f6942c23a9a8b2c593cb5e9a21ce4634857e03a6c67d3c36229ca70c45c792 |
import os
import sys
import os.path as op
import pysam
from bcbio.log import logger
from bcbio.utils import file_exists, safe_makedir, chdir, get_perl_exports
from bcbio.provenance import do
from bcbio.distributed.transaction import file_transaction
from bcbio.pipeline import datadict as dd
def run(data):
confi... | biocyberman/bcbio-nextgen | bcbio/srna/mirdeep.py | Python | mit | 4,651 | [
"pysam"
] | 6c0fe0d3ef0e555baccf17978208730cc451cbaf73e73e232be50992a586e64f |
#Copyright 2009 Almero Gouws, <14366037@sun.ac.za>
"""
This module provides general functions that are used by the Python
based Bayesian network toolbox.
"""
__docformat__ = 'restructuredtext'
import numpy as np
import pylab
def determine_observed(evidence):
"""
Determine which nodes are observe... | bhrzslm/uncertainty-reasoning | my_engine/others/GrMPy/lib/GrMPy/general.py | Python | mit | 8,556 | [
"Gaussian"
] | 9626d3ac8fef9d5d2526765a24660d53b39ea6b1e1cb1fd4d090fb555a193464 |
# vi:sts=4:sw=4:et
"""Code for parsing OpenEmbedded license strings"""
import ast
import re
from fnmatch import fnmatchcase as fnmatch
class LicenseError(Exception):
pass
class LicenseSyntaxError(LicenseError):
def __init__(self, licensestr, exc):
self.licensestr = licensestr
self.exc = exc
... | wwright2/dcim3-angstrom1 | sources/openembedded-core/meta/lib/oe/license.py | Python | mit | 3,978 | [
"VisIt"
] | e9af2f8d51b08c74e40bedbee2d4af0bd467e71b1df019393461c008d09f9ba1 |
#
# Modified based on MINDO3_Parameters.py and Slater.py in PyQuante-1.6
#
"""\
MINDO3.py: Dewar's MINDO/3 Semiempirical Method
This program is part of the PyQuante quantum chemistry program suite.
Copyright (c) 2004, Richard P. Muller. All Rights Reserved.
PyQuante version 1.2 and later is covered by the modif... | gkc1000/pyscf | pyscf/semiempirical/mopac_param.py | Python | apache-2.0 | 13,473 | [
"Gaussian",
"PySCF"
] | 679b383a13b25e37caad91a9cf8fd4c3865c2bc0493488542dbe9d7c218c92ba |
#!/usr/bin/python
"""
This module specifically deals with the photometric quantities
related to a Multi Gaussian Expansion models (Monnet et al. 1992, Emsellem et al. 1994). It
makes use of the MGE class defined in pygme.py module.
It includes the derivation of projected and deprojected photometry.
WARNING: this modu... | emsellem/pygme | pygme/photMGE.py | Python | bsd-3-clause | 17,400 | [
"Gaussian"
] | 90127eaeed970706a755bd51f3a95feac5d481a7599c31f399f74cbf4c6e1e31 |
# -*- coding: utf-8 -*-
#
# Copyright (C) 2008-2009 Edgewall Software
# All rights reserved.
#
# This software is licensed as described in the file COPYING, which
# you should have received as part of this distribution. The terms
# are also available at http://genshi.edgewall.org/wiki/License.
#
# This software consist... | OpenClovis/SAFplus-Availability-Scalability-Platform | src/ide/genshi/genshi/template/ast24.py | Python | gpl-2.0 | 17,676 | [
"VisIt"
] | e2561ac756f66dac0374b9d6b95cfe3f44cad27cbfb65695d9f524762983fbd7 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the te... | andreaso/ansible | lib/ansible/modules/network/avi/avi_gslbhealthmonitor.py | Python | gpl-3.0 | 6,440 | [
"VisIt"
] | 5db2e4e398c5a0146de2817587c70c1b225046ae5f8fced0bb3fe72ac6e0c69e |
import unittest
import galaxy.model.mapping as mapping
class MappingTests( unittest.TestCase ):
def test_basic( self ):
# Start the database and connect the mapping
model = mapping.init( "/tmp", "sqlite:///:memory:", create_tables=True )
assert model.engine is not None
# Make some c... | jmchilton/galaxy-central | galaxy/model/mapping_tests.py | Python | mit | 1,976 | [
"Galaxy"
] | a55842804e0b03f98aef8e634474115e0bc7684afecdf3b0d2c9569b61df7937 |
../../../../../../../share/pyshared/orca/scripts/apps/notify-osd/__init__.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/apps/notify-osd/__init__.py | Python | gpl-3.0 | 76 | [
"ORCA"
] | 6c56a4d873bf92247f8791c1f22d8cb374e6e5b1bf1390f02bc72af23aa1a3e7 |
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
"""Migrate from 0.14 to 0.15
Revision ID: 49a4a1e3779a
Revises: 057b08... | jtoppins/beaker | Server/bkr/server/alembic/versions/49a4a1e3779a_014_to_015.py | Python | gpl-2.0 | 6,218 | [
"VisIt"
] | 722f87319e6be93aab21448947030c5b03dfc51f972b2529f28e9aa59365e84a |
#pylint: disable=no-name-in-module
from __future__ import (absolute_import, division, print_function)
from mantid.simpleapi import CrystalFieldEnergies
import numpy as np
import warnings
def _unpack_complex_matrix(packed, n_rows, n_cols):
unpacked = np.ndarray(n_rows * n_cols, dtype=complex).reshape((n_rows, n_co... | wdzhou/mantid | scripts/Inelastic/CrystalField/energies.py | Python | gpl-3.0 | 1,767 | [
"CRYSTAL"
] | 6f80281c45b495dbf454fb7d85799df86a364745869fdaff0732e8f4238ec296 |
# -*- coding: utf-8 -*-
{
'!=': '!=',
'!langcode!': 'nl',
'!langname!': 'Nederlands',
'"update" is an optional expression like "field1=\'newvalue\'". You cannot update or delete the results of a JOIN': '"update" is an optional expression like "field1=\'newvalue\'". You cannot update or delete the results of a JOIN',
'%... | remcoboerma/w2p_redirector | languages/nl.py | Python | lgpl-3.0 | 19,638 | [
"Elk"
] | 14202c20b2355c75307e38f9d2efe2793863278b870c9e7a5fd34fbc564f5c64 |
#!/usr/bin/env python
#===============================================================================
# Copyright 2015 Geoscience Australia
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#... | ama-jharrison/agdc | agdc/agdc/modis_ingester/__init__.py | Python | apache-2.0 | 5,726 | [
"NetCDF"
] | 0dcb14d0af5c9791ec4a71e2ee64bdfd7f0b2862a80b5a2358ad80c58c66550d |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2013 Radim Rehurek <me@radimrehurek.com>
# Licensed under the GNU LGPL v2.1 - http://www.gnu.org/licenses/lgpl.html
"""
Deep learning via word2vec's "skip-gram and CBOW models", using either
hierarchical softmax or negative sampling [1]_ [2]_.
The train... | kmike/gensim | gensim/models/word2vec.py | Python | gpl-3.0 | 72,370 | [
"VisIt"
] | 66122b0b4e7a42f09504b532068c07dbb2921efeb92aae1535f350dc13a653b8 |
#!/software/python/3.3.3/bin/python3.3
import sys
import os
import argparse
import locations
import subprocess
import pickle
import pwd
from redhawk import *
# Second version of the script for testing RAIDER.
# Generates runs only; will use a seperate script for testing.
#######################
# Globals: So we don... | karroje/RAIDER_eval | testing_pipeline.py | Python | gpl-3.0 | 33,390 | [
"BLAST"
] | 0e272d5df23979f8d4c3407ea637dfaa0895e1571371e57fcddca88710a9c841 |
"""
Write a function that takes an unsigned integer and
returns the number of ’1' bits it has
(also known as the Hamming weight).
For example, the 32-bit integer ’11' has binary
representation 00000000000000000000000000001011,
so the function should return 3.
T(n)- O(k) : k is the number of 1s present in binary re... | marcosfede/algorithms | bit/count_ones.py | Python | gpl-3.0 | 867 | [
"Brian"
] | 96f538fe735ce4bd0af147cb872183ffdb10ffc7b39f2c630c585c300b5d02de |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2017 Lenovo, Inc.
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# ... | andreaso/ansible | lib/ansible/modules/network/lenovo/cnos_conditional_command.py | Python | gpl-3.0 | 7,085 | [
"VisIt"
] | c90376116936e9cc298be1bae2a89b2b2365f029428af91406de817764d8747e |
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