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#!/usr/bin/env python
#-*- coding:utf-8 -*-
# test_generation.py
# This file is part of the NNGT module
# Distributed as a free software, in the hope that it will be useful, under the
# terms of the GNU General Public License.
"""
Test the connect group and type methods.
"""
import pytest
import numpy as np
import... | Silmathoron/NNGT | testing/test_connect_group_type.py | Python | gpl-3.0 | 5,795 | [
"Gaussian"
] | 281f1ba098fbfeb058378a5af9bff3bb053a6ad3c55ea25a80fb77347716e14b |
"""Splinter plugin for pytest.
Provides easy interface for the browser from your tests providing the `browser` fixture
which is an object of splinter Browser class.
"""
import functools # pragma: no cover
try:
from httplib import HTTPException
except ImportError:
from http.client import HTTPException
import m... | pelme/pytest-splinter | pytest_splinter/plugin.py | Python | mit | 17,698 | [
"VisIt"
] | 5eaa0d8ea0a47359a4f7fbd951131e96bd4dff045ce1f9e376fdec4657965eef |
import numpy as np
from astropy.table import Table
from astropy.io import fits
import matplotlib.pyplot as plt
import matplotlib
import pickle
from os.path import isfile, join
from os import listdir
import astropy.io.fits as ts
from TheCannon import dataset,apogee
from astropy.table import Table
import numpy as np
impo... | peraktong/Cannon-Experiment | DR13_red_clump/0323_make_table_red_clump.py | Python | mit | 7,098 | [
"VisIt"
] | ad32e3d78f416100525ba08eabdb00f10f6812fb5dc98028e4cb66116f24e6cd |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2002 Gary Shao
# Copyright (C) 2007 Brian G. Matherly
# Copyright (C) 2009 Benny Malengier
# Copyright (C) 2009 Gary Burton
#
# This program is free software; you can redistribute i... | arunkgupta/gramps | gramps/gen/plug/docgen/paragraphstyle.py | Python | gpl-2.0 | 11,375 | [
"Brian"
] | ece7775f10d255bc231476efac2abb396d08f313b1c233f0762987fd33a68606 |
import matplotlib.pyplot as pl
from astroML.plotting.tools import draw_ellipse
def fake_data_plot(x_true, y_true, x, y, samples=None, mus=None, Vs=None):
"""
Two column plot of fake data in xd-demo.ipynb
"""
fig = pl.figure(figsize=(5, 3.75))
fig.subplots_adjust(left=0.1, right=0.95,
... | rossfadely/xd-demo | demo_utils.py | Python | mit | 4,411 | [
"Galaxy"
] | ddff77ad80a9d18ef519e11e258d0d092e3647955cb08c7ba0815e3887c2b548 |
# Copyright (C) 2016
# Jakub Krajniak (jkrajniak at gmail.com)
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
... | hidekb/espressopp | src/integrator/LangevinThermostatOnGroup.py | Python | gpl-3.0 | 2,236 | [
"ESPResSo"
] | 8abe9003f15962f6794d62c86863ca89d0158f3f9dc48e2c87f7a20f3ea606d3 |
# coding=utf-8
from __future__ import absolute_import
from flask import url_for
from flask_login import current_user
import pytest
from firefly.six import unicode
from firefly.models.user import User
from firefly.views.api.consts import OK
@pytest.mark.usefixtures('client_class')
class TestUser:
def setup(self)... | matrixorz/firefly | tests/test_user.py | Python | mit | 3,213 | [
"Firefly"
] | a95f66203808fb830efbd0aa26e5cb9b87bf1492cd286a4b03529a62489d030c |
"""
generate toy datasets
based on code by Mark Rogers
"""
from math import sin, pi
from random import gauss
import numpy
import datafunc
##
# Class generators:
##
def sineClass(xlim=[0,1], ylim=[0,1], n=20, sigma = 0.04) :
"""
Generates a 2-D noisy sine wave
Parameters:
xlim ... | cathywu/Sentiment-Analysis | PyML-0.7.9/PyML/datagen/toydata.py | Python | gpl-2.0 | 4,824 | [
"Gaussian"
] | e4ccf4ec48044ea2a372c99f4a958838b8cfb2f415c81b5ae0974ebb80c7d361 |
../../../../../../../share/pyshared/orca/scripts/apps/pidgin/__init__.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/apps/pidgin/__init__.py | Python | gpl-3.0 | 72 | [
"ORCA"
] | 967fa4d0fdcc728035cbef4a341b9a7491e90c09eeeae824a8a932799730e14a |
# Numenta Platform for Intelligent Computing (NuPIC)
# Copyright (C) 2020, Numenta, Inc. Unless you have an agreement
# with Numenta, Inc., for a separate license for this software code, the
# following terms and conditions apply:
#
# This program is free software: you can redistribute it and/or modify
# it unde... | mrcslws/nupic.research | src/nupic/research/frameworks/vernon/network_utils.py | Python | agpl-3.0 | 4,364 | [
"Gaussian"
] | 381fa8aad53f337325f714fdb9e7c9a0f55e33e92429e9892dbc40345f35d0d7 |
"""
Executes a set of implementations as a program.
"""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from __future__ import print_function
from zeroinstall import _
import os, sys
from logging import info, debug
from string import Template
from zeroinstall.in... | dabrahams/zeroinstall | zeroinstall/injector/run.py | Python | lgpl-2.1 | 10,692 | [
"VisIt"
] | cc31877c03f259509260ed32d3042cc521eb72b6259d5386b2469a18d696faaf |
#!/usr/bin/python
from stemming.porter2 import stem
import DictionaryServices, re, operator
#ignore_list = set(['the', 'noun', 'adjective', 'the', 'for', 'not', 'when', 'shall', 'will', 'and', 'with', 'brit', 'informal', 'but', 'that', 'from', 'verb', 'their', 'derivatives', 'adverb', 'late', 'latin', 'origin'])
star... | jbowens/taboo | wordgen/osx-dict/explore.py | Python | mit | 2,913 | [
"VisIt"
] | 1637311aff571844d88443dab0d81f4b5bfe2bc2d1682d323cdced5c23b8de8c |
########################################################################
# File : ModuleFactory.py
# Author : Stuart Paterson
########################################################################
""" The Module Factory instantiates a given Module based on a given input
string and set of arguments to be pas... | ic-hep/DIRAC | src/DIRAC/Core/Utilities/ModuleFactory.py | Python | gpl-3.0 | 1,990 | [
"DIRAC"
] | 2a60f92d4bf57fd47833301506c283ab11d8cbd8271fbaa248a777a8e52cfead |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
#
# Copyright (C) 2020 Stoq Tecnologia <http://www.stoq.com.br>
# All rights reserved
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public License
# as published by the Free Software Foundation;... | stoq/stoq-server | stoqserver/api/resources/b1food.py | Python | gpl-2.0 | 44,437 | [
"VisIt"
] | 6ef829975bb8ebd62e8db5be7ec34afc1f0e3568891df42cba2320323cdf460d |
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | lgarren/spack | var/spack/repos/builtin/packages/r-affycontam/package.py | Python | lgpl-2.1 | 1,837 | [
"Bioconductor"
] | c31cc4cb36bbbfffc858ef4002b7f9da931faea4936c45a3be74c9bbdae750ae |
""" Hidden Markov model (HMM) with Gaussian observations
This example shows how a hidden Markov model can be implemented
as a dynamic Bayesian network.
The DBN is be unrolled for N time-slices and inference/learning
is performed in the unrolled static network with condition
PDFs shared across time slices.
x1 _ x2 .... | bhrzslm/uncertainty-reasoning | my_engine/others/GrMPy/lib/GrMPy/Tests/test_ghmm.py | Python | mit | 2,546 | [
"Gaussian"
] | d994bd64474e9566f10f60a73e118bbbebc1c1ceae9850832679b4cfc997b7b6 |
#!/usr/bin/env python
import pylab as pyl
import numpy as np
import matplotlib.pyplot as pp
#from enthought.mayavi import mlab
import scipy as scp
import scipy.ndimage as ni
import roslib; roslib.load_manifest('sandbox_tapo_darpa_m3')
import rospy
#import hrl_lib.mayavi2_util as mu
import hrl_lib.viz as hv
import hr... | tapomayukh/projects_in_python | classification/Classification_with_CRF/old_crfsuite_package/data_conversion.py | Python | mit | 4,634 | [
"Mayavi"
] | 01b63712cb9f059b394aded291be73f84381bf350972f533a469a7994e7f69dc |
# -*- coding: utf-8 -*-
"""
generators.py: Trivial result generation functions for illustrating
tdda.referencetest
Source repository: http://github.com/tdda/tdda
License: MIT
Copyright (c) Stochastic Solutions Limited 2016
"""
from __future__ import division
from __future__ import print_function
from ... | tdda/tdda | tdda/referencetest/examples/generators.py | Python | mit | 4,047 | [
"exciting"
] | cfada21a802dc6dab252d3a355f2cd1ed6f697be5f0b0c1a6b641ae080ac824c |
"""Joint variant calling with multiple samples: aka squaring off, or backfilling.
Handles the N+1 problem of variant calling by combining and recalling samples
previously calling individually (or in smaller batches). Recalls at all positions found
variable in any of the input samples within each batch. Takes a general... | lbeltrame/bcbio-nextgen | bcbio/variation/joint.py | Python | mit | 11,473 | [
"pysam"
] | e7c54e3c2bdcbeb2cf488f1a336a8a348877c68a3f04569ec1ee01665b7a4fcb |
from cStringIO import StringIO
import numpy as np
import warnings
import xray
from xray.backends.common import AbstractWritableDataStore
from xray.conventions import (is_valid_nc3_name, coerce_nc3_dtype,
encode_cf_variable)
from xray.utils import Frozen
class ScipyDataStore(AbstractWrit... | takluyver/xray | xray/backends/scipy_.py | Python | apache-2.0 | 3,452 | [
"NetCDF"
] | 94dcbf62b6e12eab24e2af0d19ab47368a73d23486b8927531a1a0ab6afe308b |
# This file is part of the myhdl library, a Python package for using
# Python as a Hardware Description Language.
#
# Copyright (C) 2003-2012 Jan Decaluwe
#
# The myhdl library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public License as
# published by t... | cordoval/myhdl-python | myhdl/_always_seq.py | Python | lgpl-2.1 | 7,997 | [
"VisIt"
] | 4302c36bd1fab7ba451184cf167d5fc32f3362ae24e0910ccc7073d97ae99a63 |
from django.shortcuts import render
from django.conf import settings
from django.core.files import File
from protein.models import ProteinFamily, ProteinAlias, ProteinSet, Protein, ProteinSegment
from common.views import AbsTargetSelection
from common.views import AbsSegmentSelection
from common.views import Abs... | cmunk/protwis | phylogenetic_trees/views.py | Python | apache-2.0 | 16,637 | [
"CRYSTAL"
] | adb497aad15f847ba9f39a800c7272475e7a7ad845d1b98ae0ac7efbffd629a4 |
from pyatompaw import AtompawMaster
# Atom definition
atom = AtompawMaster('26-Fe')
atom.launcher.set_executable(executable)
atom.Atom_name = 'Fe'
atom.Z = 26
rpaw = 2.12 # a.u.
rshape = 1.81
rs = 2.01
rp = 1.81
rd = 2.01
rmax = 10.0 # a.u.
rmatch = rpaw
# Keywords
atom.XC_functional = 'GGA-PBE'
atom... | GkAntonius/pyatompaw | examples/Fe.py | Python | gpl-3.0 | 2,166 | [
"ABINIT"
] | ce44fc33b9f1dee4a2f945dd0c2fcc61415d4e364085c35b875430ad804a8d54 |
#!/usr/bin/env python
""" routines describing the number density evolution of galaxy populations in Illustris. """
__author__ = "Paul Torrey with contributions from Ryan McKinnon"
__copyright__ = "Copyright 2015, The Authors"
__credits__ = ["Paul Torrey and Ryan McKinnon"]
__license__ = "GPL"
__version__ = "1.0"
__mai... | ptorrey/torrey_cmf | torrey_cmf.py | Python | gpl-2.0 | 15,955 | [
"Galaxy"
] | a349d8ea39fe24599ae4ed2c5bd29cd797c8b9de8fd1242cbc5b202b6e296324 |
# -*- coding: utf-8 -*-
#
# test_clopath_synapse.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the Li... | hakonsbm/nest-simulator | pynest/nest/tests/test_clopath_synapse.py | Python | gpl-2.0 | 9,545 | [
"NEURON"
] | 125c89b155bfe4118cb4ff8a6db83b9db4f0f3df86a947736f78cf9eb8be2c15 |
# nnmware(c)2012-2020
from __future__ import unicode_literals
import json
from django.contrib import messages
from django.utils.deprecation import MiddlewareMixin
from django.utils.timezone import now
from nnmware.core.utils import setting
from nnmware.core.http import get_session_from_request
from nnmware.core.mode... | nnmware/nnmware | core/middleware.py | Python | gpl-3.0 | 2,844 | [
"Firefly",
"Galaxy"
] | 9d938a2bd01da6ddcde85b837c69293506970adbd2b20112c914e62182e4b630 |
"""
Acceptance tests for grade settings in Studio.
"""
from __future__ import absolute_import
from bok_choy.promise import EmptyPromise
from six.moves import range
from common.test.acceptance.fixtures.course import XBlockFixtureDesc
from common.test.acceptance.pages.studio.settings_graders import GradingPage
from com... | ESOedX/edx-platform | common/test/acceptance/tests/studio/test_studio_grading.py | Python | agpl-3.0 | 10,392 | [
"VisIt"
] | 6a8472950dfa5f1fd6fe3a9120f0bc52608546db1230e70bc4316bb0696f2c40 |
# ----------------------------------------------------------------------
# Numenta Platform for Intelligent Computing (NuPIC)
# Copyright (C) 2013, Numenta, Inc. Unless you have an agreement
# with Numenta, Inc., for a separate license for this software code, the
# following terms and conditions apply:
#
# This progra... | neuroidss/nupic.vision | nupicvision/regions/ImageSensorFilters/GaussianBlur.py | Python | gpl-3.0 | 1,746 | [
"Gaussian"
] | fae41f80e0df21d4654f056617ac31a17ec2efaeace1a87f72517e3ee1cbe9b1 |
#!/usr/bin/env python
#
# GPytage config.py module
#
############################################################################
# Copyright (C) 2008-2010 by Kenneth Prugh, Brian Dolbec #
# ken69267@gmail.com #
# ... | Ken69267/gpytage | gpytage/config.py | Python | gpl-2.0 | 2,419 | [
"Brian"
] | aab682be0dc448f9e6644212a996233b510959d6948a35749f8b7a3e630942a0 |
import numpy as np
import ephem
from scipy.stats import norm
def gaussian(x, a, b, c, d):
val = d + (a * np.exp(-(x - b)**2 / c**2))
return val
def fehprior(feh):
_fehprior = (0.8/0.15*np.exp(-0.5*(feh-0.016)**2./0.15**2.)
+0.2/0.22*np.exp(-0.5*(feh+0.15)**2./0.22**2.))
return _fehpri... | danxhuber/isoclassify | isoclassify/grid/priors.py | Python | mit | 1,993 | [
"Gaussian"
] | 441bf32fac3692aba3519bb806395c495e8696b1b71cb500d50821412a49cf79 |
#!/usr/bin/env python
import numpy
import netCDF4
import argparse
import os
def parseCommandLine():
"""
Parse the command line and invoke operations.
"""
parser = argparse.ArgumentParser(description=
'''
Reads WOA05 ascii files and writes as netcdf.
''',
epilog='Written by A.Adcroft, 2... | adcroft/convert_WOA05 | python/WOA05_to_netcdf.py | Python | mit | 5,973 | [
"NetCDF"
] | 0dd176714cfdb515f04c0585d15542823715708e2094e30e2b8c7ab649b193d3 |
#!/usr/bin/env python
'''
TrainNetwork.py
Written by Jeff Berry Jul 1 2010
Revised by Gus Hahn-Powell March 8 2014
purpose:
Train a translational Deep Belief Network for tracing. The training
data should be arranged in a folder called Subject<N>, where N is any
positive integer, such as Subject1. Images are locate... | arizona-phonological-imaging-lab/Autotrace | matlab-version/TrainNetwork2.py | Python | mit | 16,128 | [
"Gaussian"
] | ee0e1b9539ec85e8430bf4714f8abc3ed8aefe5a8e208e100c01e69cc0af166b |
import sys
sys.path.insert(1, "../../../")
import h2o, tests
import random
def cv_carsGBM():
# read in the dataset and construct training set (and validation set)
cars = h2o.import_file(path=h2o.locate("smalldata/junit/cars_20mpg.csv"))
# choose the type model-building exercise (multinomial classificati... | tarasane/h2o-3 | h2o-py/tests/testdir_algos/gbm/pyunit_cv_carsGBM.py | Python | apache-2.0 | 7,238 | [
"Gaussian"
] | 858720fd2c688f47838189f88a6a399f483d6fa8fadd529056c8e5f556da550c |
# Copyright (C) 2015 Hydriz Scholz
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in ... | Hydriz/DBReports | reports/nspagecount.py | Python | gpl-3.0 | 3,398 | [
"VisIt"
] | 1a8be4a973af30129c4428df441d8d948e2e001059b7b45c4a1e2366a7d35801 |
from __future__ import division, print_function, absolute_import
import math
import warnings
from collections import namedtuple
import numpy as np
from numpy import (isscalar, r_, log, around, unique, asarray,
zeros, arange, sort, amin, amax, any, atleast_1d,
sqrt, ceil, floor, a... | lhilt/scipy | scipy/stats/morestats.py | Python | bsd-3-clause | 111,757 | [
"Gaussian"
] | f670b57b1050ccbc3783ca52f848626bc5a84927df3e813b2be82d8193ef94c3 |
"""
Service class implements the server side part of the DISET protocol
There are 2 main parts in this class:
- All useful functions for initialization
- All useful functions to handle the requests
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
... | yujikato/DIRAC | src/DIRAC/Core/DISET/private/Service.py | Python | gpl-3.0 | 28,969 | [
"DIRAC"
] | 99110fd1048ef399a3e0eaf2a03b4450bcd6583b487c33a0b84e63970c62ba69 |
from . import neuralnet
from . import neuron
from . import helpers
__all__ = ["neuralnet", "neuron", "helpers"]
| jpypi/ffnn | __init__.py | Python | mit | 113 | [
"NEURON"
] | 0bd722962dd488d122425edd1be2ab0a1ba5e2ade6cc472dfe6a277ed1f793e8 |
# Mantid Repository : https://github.com/mantidproject/mantid
#
# Copyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,
# NScD Oak Ridge National Laboratory, European Spallation Source
# & Institut Laue - Langevin
# SPDX - License - Identifier: GPL - 3.0 +
from __future__ import (absolute_import, divi... | mganeva/mantid | scripts/AbinsModules/SingleCrystalData.py | Python | gpl-3.0 | 1,850 | [
"CRYSTAL"
] | f5ffe26bd6345e8a0cbc7fb76bc0c2c97adefeb8f4c2e973c64a8e39e618b037 |
# Copyright (c) 2021 PaddlePaddle Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by app... | PaddlePaddle/Paddle | python/paddle/nn/initializer/dirac.py | Python | apache-2.0 | 7,958 | [
"DIRAC"
] | d20300442db00576613e7e6d3af4f385f67910926cefcc2291a544293265ec86 |
import msmexplorer as msme
from msmexplorer.utils import msme_colors
from matplotlib.ticker import FuncFormatter
from matplotlib import pyplot as pp
from traj_utils import split_trajs_by_type
import numpy as np
import pandas as pd
import seaborn as sns
from glob import glob
from natsort import natsorted, order_by_index... | jeiros/Scripts | AnalysisMDTraj/plot_utils.py | Python | mit | 26,888 | [
"MDTraj"
] | a3a7681d47b30c27e777f0a66d928fab7433af459ae851728e5e82b4c81659b7 |
#
# This source file is part of appleseed.
# Visit https://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2017-2018 Francois Beaune, The appleseedhq Organization
#
# Permission is hereby granted, free of charge, to any person obtaining ... | Biart95/appleseed | sandbox/samples/python/studio/plugins/basicenumerator/__init__.py | Python | mit | 2,107 | [
"VisIt"
] | ae4c5bf7de50fd8def4fc291623217b56b2ffd1be958027a64667bb312f6651d |
from __future__ import annotations
import collections
import glob
import os
import procrunner
import pytest
from cctbx import uctbx
from dxtbx.model import ExperimentList
from dxtbx.serialize import load
from dials.array_family import flex
def unit_cells_are_similar(
uc1, uc2, relative_length_tolerance=0.01, ... | dials/dials | tests/algorithms/indexing/test_index.py | Python | bsd-3-clause | 28,216 | [
"CRYSTAL"
] | ce5e82e6d04918833991fcdf1382c911d13f38ff4f126313772504f3fdce401f |
# -*- coding: utf-8 -*-
# Generated by Django 1.9.5 on 2016-06-15 20:17
from django.db import migrations, models
class Migration(migrations.Migration):
dependencies = [
('stein', '0006_auto_20151115_1744'),
]
operations = [
migrations.AddField(
model_name='mineraltype',
... | GeoMatDigital/django-geomat | geomat/stein/migrations/0007_auto_20160615_2017.py | Python | bsd-3-clause | 4,515 | [
"CRYSTAL"
] | e932c881f635a4b99b97364a9d9a65f4e8bb78e687d4553c6ad11437ea63cee9 |
"""
Module: audit_tie_breaker
Author: Berj K. Chilingirian
Date: 10 August 2016
Description:
The Australian Senate Election (ASE) may require an Australian Election
Official (AEO) to break a tie. There are three cases in which ties must
be broken manually by an AEO:
Case 1: Election Order Tie... | berjc/aus-senate-audit | aus_senate_audit/audit_tie_breaker.py | Python | apache-2.0 | 14,693 | [
"ASE"
] | eae5eeb2f8fe6eae498c5e0d7b9c8008154b19494eeb4ce61a2e96718cca977a |
# Tests for basic Tkinter widgets.
import Tkinter
import Test
Test.initialise()
testData = ()
if Tkinter.TkVersion >= 8.0:
button_num = 31
frame_num = 16
menu_num = 20
menubutton_num = 32
else:
button_num = 30
frame_num = 15
menu_num = 19
menubutton_num = 31
c = Tkinter.Button
te... | CasataliaLabs/biscuit_drishtiman | Pmw-2.0.0/build/lib.linux-x86_64-2.7/Pmw/Pmw_1_3_3/tests/Tkinter_test.py | Python | gpl-3.0 | 12,105 | [
"Brian"
] | 4cd0991c892a3cc25df6c9462cd86deb6884742cca3c9fd24ee14bc6b80752ab |
""" Unit test for ConsistencyInspector
"""
import unittest
import datetime
from mock import MagicMock
from DIRAC import gLogger
from DIRAC.Resources.Catalog.test.mock_FC import fc_mock
# sut
from DIRAC.DataManagementSystem.Client.ConsistencyInspector import ConsistencyInspector
class UtilitiesTestCase( unittest.Tes... | Andrew-McNab-UK/DIRAC | DataManagementSystem/Client/test/Test_Client_DataManagementSystem.py | Python | gpl-3.0 | 9,190 | [
"DIRAC"
] | 765d71200a05bb98f5776f7efd42efb1f74195005e1bf70d268a81133b613717 |
#!/usr/bin/env python
"""
login to my wifi
"""
from splinter.browser import Browser
from time import sleep
URL = 'https://controller...'
def main():
br = Browser('chrome')
br.visit(URL)
sleep(3)
if br.is_text_present('Connection', wait_time=7):
br.fill('login', '...')
br.fill('passwo... | jabbalaci/jabbapylib | demos/browser_automation/splinter_wifi.py | Python | gpl-3.0 | 523 | [
"VisIt"
] | 9d54d59e084d17cd25655b1064b706933b3f3896a6f9e57f212327006351b7b9 |
#! /usr/bin/env python
# -*- coding:utf-8
# Convolutional Neural Network (CNN) for recognizing handwritten digits, using tflearn
# Special thanks: Harisson@pythonprogramming.net
'''
File name: cnn_simple.py
Author: chimney37
Date created: 12/09/2017
Python Version: 3.62
'''
import tflearn
from tflearn.... | chimney37/ml-snippets | cnn_simple.py | Python | mit | 6,827 | [
"NEURON"
] | 35c84a24cbe67986934c32090e61b4a5398602587d0aa7014f8e63015966f519 |
# -*- coding: utf-8 -*-
#
# librosa documentation build configuration file, created by
# sphinx-quickstart on Tue Jun 25 13:12:33 2013.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All... | ebattenberg/librosa | docs/conf.py | Python | isc | 8,244 | [
"Brian"
] | 4b7741fef757c43792c347d69a57aac37fc2eada28dd2566f7d130c708d13a91 |
from DIRAC.Core.Base import Script
Script.parseCommandLine()
import unittest
import itertools
from DIRAC.DataManagementSystem.DB.FileCatalogDB import FileCatalogDB
from DIRAC.Core.Security.Properties import FC_MANAGEMENT
seName = "mySE"
testUser = 'atsareg'
testGroup = 'dirac_user'
testDir = '/vo.formation.idgrille... | coberger/DIRAC | DataManagementSystem/DB/test/TestFileCatalogDB.py | Python | gpl-3.0 | 43,159 | [
"DIRAC"
] | e9b082139833e1511d4cae3138a8303a1dc29fe3fb9e562cb29fa17c55742a19 |
import argparse
import os
import numpy as np
import pylab as pl
import itertools
from astropy.coordinates import Angle
from numpy.polynomial.chebyshev import chebval
from scipy.interpolate import interp1d
import SEDMr.Wavelength as Wavelength
import SEDMr.Spectra as SedSpec
import SEDMr.Version as Version
# Nadia im... | scizen9/kpy | SEDMr/CurveOfGrowth.py | Python | gpl-2.0 | 20,078 | [
"Gaussian"
] | 46432cf63926ae6b2257b440fbd6ce8f2fcf175bfd5f07ee9b843fe2971d23f4 |
#!/usr/bin/env python3
# Copyright 2017 Jan von Cosel
#
# This file is part of utility-scripts.
#
# utility-scripts is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at yo... | janvc/utility-scripts | scripts/genviper.py | Python | gpl-3.0 | 3,352 | [
"Gaussian"
] | 0db281c4ef2a69589ddb0d67f1a407545782f3385700ea7d29092cc5e2016ecb |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | jH0ward/psi4 | psi4/driver/p4util/__init__.py | Python | lgpl-3.0 | 1,155 | [
"Psi4"
] | 81ae451eb5d4bdafafc594ae45f2623aa45f3195485915e4608b192ca9416687 |
#!/usr/bin/env python
# 12.01.2007, c
import os.path as op
import shutil
from optparse import OptionParser
import sfepy
from sfepy.base.base import *
from sfepy.base.conf import ProblemConf, get_standard_keywords
from sfepy.applications import SimpleApp
##
# 26.03.2007, c
def print_terms():
import sfepy.terms as... | olivierverdier/sfepy | simple.py | Python | bsd-3-clause | 4,701 | [
"VTK"
] | 859b7223f7617092cf03af3a68a1196e92f6ce5f110b82af56fe906fbea47572 |
import pandas as pd
import numpy as np
import json
from datetime import datetime
from queries import *
from dataset import *
def price_quartiles(df):
if('price' in df.columns):
prices = df['price']
first, second, third = prices.quantile([.25, .5, .75])
return first, second, third
else:... | jairot/meliscore | meliscore/front/sweet_price_spot.py | Python | bsd-3-clause | 2,353 | [
"Galaxy"
] | cbc830e2451773839c1b48a9faf075543d4e0f3f6c2c898a0957d738eead14e4 |
from common import Modules, data_strings, load_yara_rules, PEParseModule, ModuleMetadata, is_ip_or_domain
import pefile
class diamondfox(PEParseModule):
def __init__(self):
md = ModuleMetadata(
module_name="diamondfox",
bot_name="diamondfox",
description="Bot that steal... | bwall/bamfdetect | BAMF_Detect/modules/diamondfox.py | Python | mit | 4,881 | [
"Brian"
] | c21e4bac3c5bbe3245cb81e9f115feada7dd6c0f2c5a5a608d6def6b68ef415c |
# Copyright (C) 2010-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | hmenke/espresso | testsuite/python/dds-and-bh-gpu-perf.py | Python | gpl-3.0 | 7,321 | [
"ESPResSo"
] | d06b7b99feab128171bff8f0b703af05f8684a133612b17f144660d4e1efc20e |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | capoe/espressopp.soap | src/soap/Descriptor.py | Python | gpl-3.0 | 2,040 | [
"ESPResSo"
] | 2fd549fad1b2799a9a7e3a100a51971193ac730b43f9c40031d6f527418ca513 |
import numpy as np
from . import _get_default_resolution
def conv(a,b,padding_things_equal=[1,3,4],padding_things_tail=[1],*args,**kwargs):
raise Exception("Needs reimplementation!")
a_ = a.copy()
b_ = b.copy()
a_ = np.pad(a_,[(s-1,s-1) for si,s in enumerate(b_.shape)],mode='constant')
return _con... | jahuth/convis | convis/numerical_filters.py | Python | gpl-3.0 | 10,343 | [
"Gaussian"
] | b9d9727fee7626960b65beeab1d5d1708b7e606b0413f310fa49b7b4f7b010b8 |
import pandas as pd
from sklearn.ensemble import RandomForestClassifier
from sklearn.ensemble import GradientBoostingClassifier
from sklearn.ensemble import BaggingClassifier
from sklearn.ensemble import AdaBoostClassifier
from sklearn.ensemble import ExtraTreesClassifier
from sklearn.neural_network import MLPClassifie... | rupakc/Kaggle-Compendium | Spooky Author Identification/spooky-baseline.py | Python | mit | 2,770 | [
"Gaussian"
] | d7307428c004830c11d32c9a8f67a3b8292f86cf23075c320e713b2b3f1eb912 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# lsvgridtriggers - simple list of vgrid triggers for a grid with access
# Copyright (C) 2003-2015 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms... | heromod/migrid | mig/shared/functionality/lsvgridtriggers.py | Python | gpl-2.0 | 2,787 | [
"Brian"
] | c8175b2ac67e63e858df3bba9a663b2e6660ef2c2111d93b1276849c9a5532e1 |
import numpy
from rdkit.Chem import AllChem
from steps.preprocessing.shared.chemicalproperties import chemical_properties
from steps.preprocessing.shared.tensor2d import bond_positions, bond_symbols
with_empty_bits = False
padding = 2
def molecule_to_2d_tensor(molecule, index_lookup, rasterizer_, preprocessed_shape... | patrick-winter-knime/mol-struct-nets | molstructnets/steps/preprocessing/shared/tensor2d/molecule_2d_tensor.py | Python | gpl-3.0 | 3,723 | [
"RDKit"
] | 087c302bdfd6219a6ee44122f4a6e154fab6554e06eaf772585eb33cc01cb5f6 |
'''
Pulse characterization
Created Fri May 12 2017
@author: cpkmanchee
'''
import numpy as np
import os.path
from inspect import getargspec
from warnings import warn
from beamtools.constants import h,c,pi
from beamtools.common import normalize, gaussian, sech2, alias_dict, FitResult
from beamtools.import_data_file... | kikimaroca/beamtools | beamtools/pulse.py | Python | mit | 10,038 | [
"Gaussian"
] | bfc98a5e9f835b360527b43db92e6e668a6b00b863aa71a3005ebaef7a41630c |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RHdf5array(RPackage):
"""HDF5 backend for DelayedArray objects
Implements the HDF5... | LLNL/spack | var/spack/repos/builtin/packages/r-hdf5array/package.py | Python | lgpl-2.1 | 2,830 | [
"Bioconductor"
] | 906b96c74f0184c131cc70e91e08e3caa90d54d0e09cfde55aa975a5bda71d9c |
import sys
sys.path.insert(1,"../../../")
import h2o
from tests import pyunit_utils
from h2o.estimators.glm import H2OGeneralizedLinearEstimator as glm
# test scoring_history for Gaussian family with validation dataset and cv
def test_gaussian_alpha():
col_list_compare = ["iterations", "objective", "negative_log_l... | h2oai/h2o-3 | h2o-py/tests/testdir_algos/glm/pyunit_PUBDEV_8077_gaussian_alpha.py | Python | apache-2.0 | 3,487 | [
"Gaussian"
] | bfb78afeed74a3ef0a7b4b9a90b4ceb9a52aaf7c901614a060175a30cee4a7d5 |
"""A client for the device based server."""
#
# Copyright (c) 2010 Brian E. Granger and Eugene Chernyshov
#
# This file is part of pyzmq.
#
# pyzmq is free software; you can redistribute it and/or modify it under
# the terms of the Lesser GNU General Public License as published by
# the Free Software Fo... | mgadi/naemonbox | sources/psdash/pyzmq-13.1.0/examples/device/client.py | Python | gpl-2.0 | 1,140 | [
"Brian"
] | ee2063100d4cf17d2582deed7e14a739e520215706e5acef39de172473362820 |
# -*- coding: utf-8 -*-
# Copyright (c) 2020 Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
import pytest
from ansible import context
from ansible.cli.galaxy import Gala... | atosorigin/ansible | test/units/cli/galaxy/test_execute_list_collection.py | Python | gpl-3.0 | 10,584 | [
"Galaxy"
] | 2ffb016e5454e47ffb51aa5a3af58c60d9250f4435903326d962c5f99b622e00 |
"""
Instructor Dashboard Views
"""
import logging
import datetime
from opaque_keys import InvalidKeyError
from opaque_keys.edx.keys import CourseKey
import uuid
import pytz
from django.contrib.auth.decorators import login_required
from django.views.decorators.http import require_POST
from django.utils.translation imp... | kursitet/edx-platform | lms/djangoapps/instructor/views/instructor_dashboard.py | Python | agpl-3.0 | 30,777 | [
"VisIt"
] | 942adb0a05994363fa30932d39c0cfd921ad343eeb8018b58e17336dcbfed1b8 |
import sys
sys.path.insert(1, "../../../")
import h2o, tests
import random
def cv_carsGLM():
# read in the dataset and construct training set (and validation set)
cars = h2o.import_file(path=h2o.locate("smalldata/junit/cars_20mpg.csv"))
# choose the type model-building exercise (multinomial classificati... | tarasane/h2o-3 | h2o-py/tests/testdir_algos/glm/pyunit_cv_carsGLM.py | Python | apache-2.0 | 6,743 | [
"Gaussian"
] | d946f308171169573b44ebb0281ca5ccc5290dbfb4f99d91c5c1d1ab58164ee0 |
#!/usr/bin/env python2.7
#
# ----------------------------------------------------------------------------------------------------
#
# Copyright (c) 2007, 2012, Oracle and/or its affiliates. All rights reserved.
# DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS FILE HEADER.
#
# This code is free software; you can redis... | smarr/graal | mxtool/mx.py | Python | gpl-2.0 | 219,099 | [
"VisIt"
] | a5c97a1c7c86f33a82043994bae6f379585ca5e01fe14d330e87c151eda1f716 |
# Placeholder because log moved
# Remove this in version 1.0
import warnings
with warnings.catch_warnings():
warnings.simplefilter('always', DeprecationWarning)
warnings.warn(("log has moved to MDAnalysis.lib.log "
"and will be removed from here in release 1.0"),
Deprecatio... | alejob/mdanalysis | package/MDAnalysis/core/log.py | Python | gpl-2.0 | 355 | [
"MDAnalysis"
] | ef43bc53ec6b62a11e3e9caa05be7cddd01fe1280936dfd8664459d40ff12bb0 |
from locust import TaskSet, task, HttpLocust
class UserBehavior(TaskSet):
def on_start(self):
self.index = 0
@task
def test_visit(self):
url = self.locust.share_data[self.index]
print('visit url: %s' % url)
self.index = (self.index + 1) % len(self.locust.share_data)
s... | WZQ1397/automatic-repo | project/locust/locustcircle_url_test.py | Python | lgpl-3.0 | 530 | [
"VisIt"
] | 41c40ec0953345133d80a1bae92a63647d144a4ad457b23b627a9d1486971327 |
# -*- coding: utf-8 -*-
#############################################################################
# SRWLIB Example: Virtual Beamline: a set of utilities and functions allowing to simulate
# operation of an SR Beamline.
# The standard use of this script is from command line, with some optional arguments,
# e.g. for ... | radiasoft/sirepo | tests/template/srw_import_data/amx.py | Python | apache-2.0 | 34,767 | [
"CRYSTAL"
] | d06308a3a5a491cb72a94e5c57bf910544b7cbc38a26de5c7107958593b58cf3 |
# Test BUG #0015025: Toggling annotation text visibility in Catalyst/batch doesn't work.
from paraview.simple import *
from paraview import smtesting
smtesting.ProcessCommandLineArguments()
v = CreateRenderView()
v.OrientationAxesVisibility = 0
HeadingText = Text(Text="Hello World")
HeadingRep = Show()
HeadingRep.Wi... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/ParaViewCore/ServerManager/Default/Testing/Python/AnnotationVisibility.py | Python | gpl-3.0 | 875 | [
"ParaView",
"VTK"
] | 003cf9c46a85670dad775f3b13964018df2be8b6eb38f45b648d92ff3a51ac86 |
# -*- coding: utf-8 -*-
import logging
from cStringIO import StringIO
from math import exp
from lxml import etree
from path import path # NOTE (THK): Only used for detecting presence of syllabus
import requests
from datetime import datetime
import dateutil.parser
from lazy import lazy
from xmodule.modulestore import ... | pelikanchik/edx-platform | common/lib/xmodule/xmodule/course_module.py | Python | agpl-3.0 | 42,126 | [
"VisIt"
] | 7b91c9406a47ce0d36ebb83dcbfea8c2e7d17ebda0071b6c02284d86a8b7bd84 |
""" Utilities to evaluate pairwise distances or affinity of sets of samples.
This module contains both distance metrics and kernels. A brief summary is
given on the two here.
Distance metrics are a function d(a, b) such that d(a, b) < d(a, c) if objects
a and b are considered "more similar" to objects a and c. Two ob... | ominux/scikit-learn | sklearn/metrics/pairwise.py | Python | bsd-3-clause | 20,713 | [
"Gaussian"
] | b14fb26d857f5ae3f25422aac9ce0cc3ad1d7474aa762a9ea03f7f0da61bb069 |
"""A setuptools based setup module.
See:
https://packaging.python.org/en/latest/distributing.html
https://github.com/pypa/sampleproject
"""
# Always prefer setuptools over distutils
from setuptools import setup, find_packages
# To use a consistent encoding
from codecs import open
from os import path
here = path.absp... | ldimaggi/fabric8-test | EE_API_automation/pytest/setup.py | Python | apache-2.0 | 6,875 | [
"VisIt"
] | b72599d22a75318a322c3672761273adaacf00d17cb056cf12cd895d57348197 |
"""
Testing for the forest module (sklearn.ensemble.forest).
"""
# Authors: Gilles Louppe,
# Brian Holt,
# Andreas Mueller,
# Arnaud Joly
# License: BSD 3 clause
import pickle
import math
from collections import defaultdict
import itertools
from itertools import combinations
from itertools ... | scikit-learn/scikit-learn | sklearn/ensemble/tests/test_forest.py | Python | bsd-3-clause | 59,844 | [
"Brian"
] | 72115c71c860356060bc16f378e9c2533c18d7d02546903736a5880e5c896a21 |
# Copyright 2012 IKT Leibniz Universitaet Hannover
# GPL2
# Zdravko Bozakov (zb@ikt.uni-hannover.de)
import os
import sys
import pprint
import logging
import threading
import time
import subprocess
from collections import deque
try:
# import numpy as np #FIXME
from numpy import *
import types ... | bozakov/H-probe | parser_xcov.py | Python | gpl-2.0 | 14,995 | [
"Gaussian"
] | e4b8ce2560fa7d7b1e6a702ca5da20a0797424b3f18df17df09461307b59d10a |
# Copyright (C) 2015-2017
# Jakub Krajniak (jkrajniak at gmail.com)
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free soft... | MrTheodor/AdResSLab | adresslab/topology_helper.py | Python | gpl-3.0 | 17,636 | [
"ESPResSo",
"GROMOS",
"Gromacs"
] | bc30b9d91d2c57ae58bf75a6e6c0c2935858ed02f2bc697e1929757cfa2380f9 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under th... | alejob/mdanalysis | package/MDAnalysis/topology/guessers.py | Python | gpl-2.0 | 12,236 | [
"Amber",
"CHARMM",
"GROMOS",
"MDAnalysis",
"VMD"
] | 894953d5143d03c035cd1624033190c306c783d3d928fd8145931de3933f636e |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2005-2007 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Softw... | tiagocardosos/stoq | stoqlib/gui/templates/persontemplate.py | Python | gpl-2.0 | 12,295 | [
"VisIt"
] | 6dcde2c1764ea1cc07742b1a8d7e11666b371e5a4ae29550c7eb8bc3e501581b |
#!/usr/bin/env python
from setuptools import setup, find_packages
from kademlia import version
setup(
name="kademlia",
version=version,
description="Kademlia is a distributed hash table for decentralized peer-to-peer computer networks.",
author="Brian Muller",
author_email="bamuller@gmail.com",
... | Tha-Robert/kademlia | setup.py | Python | mit | 504 | [
"Brian"
] | 70eb5f503059f23fc9a33793a9d1fa8e7763e1b04da57b5aee78709ac2e36e49 |
# text from https://microbit-micropython.readthedocs.io/en/latest/microbit_micropython_api.html
def sleep(ms):
"""sleep for the given number of milliseconds."""
def running_time():
"""returns the number of milliseconds since the micro:bit was last switched on."""
def panic(error_code):
"""makes the micro:... | hickford/microbit-dummy-python-api | microbit.py | Python | mit | 3,004 | [
"exciting"
] | 2efb6e25c899c4d11d0b4c32888587befb509e30d1a543b2833fb0a703de3128 |
#!/usr/bin/env python
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/pbc/dft/roks.py | Python | apache-2.0 | 2,644 | [
"PySCF"
] | 2c50112bf0fcf270cefd7d70e574c93973613c027465dfb03d2bd6fc7e036b5b |
#!/usr/bin/env python3
"""
Copyright (C) 2015 Petr Skovoroda <petrskovoroda@gmail.com>
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License as
published by the Free Software Foundation; either version 2 of the
License, or (at your option) any later v... | PetrSkovoroda/silver-rain | src/silver/schedule.py | Python | gpl-2.0 | 26,542 | [
"exciting"
] | 7f17b44d93238e9d397c20c3c0ce545740d8d0153540427788f23e3ac02e4bba |
#!/usr/bin/env python
#JSON {"lot": "UKS/6-31G(d)",
#JSON "scf": "EDIIS2SCFSolver",
#JSON "er": "cholesky",
#JSON "difficulty": 5,
#JSON "description": "Basic UKS DFT example with hyrbid GGA exhange-correlation functional (B3LYP)"}
import numpy as np
from horton import * # pylint: disable=wildcard-import,unused-w... | theochem/horton | data/examples/hf_dft/uks_methyl_hybgga.py | Python | gpl-3.0 | 4,578 | [
"Gaussian"
] | 4cc22780cd92d5cc03e2f00d068e038064419602d5eab732fabc117feb734489 |
# -*- Mode: Python; coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2013 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Sof... | andrebellafronte/stoq | plugins/optical/tests/test_optical_history.py | Python | gpl-2.0 | 4,533 | [
"VisIt"
] | 2dc4da39d120ee5d4a79e45fa672c9d818905a037e0fc165a501b5e78737816f |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the G... | espressopp/espressopp | src/analysis/StaticStructF.py | Python | gpl-3.0 | 4,261 | [
"ESPResSo"
] | 457eb168db381e7ae2ad5403b9f6af36c02375d430ef147eb1a683c477a48e4b |
"""Code run on the client side for unstaging complete Pulsar jobs."""
from contextlib import contextmanager
from logging import getLogger
from os.path import join, relpath
from json import loads
from ..action_mapper import FileActionMapper
from ..staging import COMMAND_VERSION_FILENAME
log = getLogger(__name__)
de... | natefoo/pulsar | pulsar/client/staging/down.py | Python | apache-2.0 | 9,758 | [
"Galaxy"
] | 912fce42564fbe66c8a4ba928109ca131be40cdf599d7fa569a242b65d28f7a7 |
# -*- coding: utf-8 -*-
"""Various text used throughout the website, e.g. status messages, errors, etc.
"""
from website import settings
# Status Messages
#################
# NOTE: in status messages, newlines are not preserved, so triple-quotes strings
# are ok
# Status message shown at settings page on first login... | adlius/osf.io | website/language.py | Python | apache-2.0 | 9,431 | [
"VisIt"
] | 64948582ee92302788ece94c3ed885bfcaec38ba31eea578e34c375bc0191472 |
"""
A collection of utility functions and classes. Originally, many
(but not all) were from the Python Cookbook -- hence the name cbook.
This module is safe to import from anywhere within matplotlib;
it imports matplotlib only at runtime.
"""
from __future__ import (absolute_import, division, print_function,
... | jonyroda97/redbot-amigosprovaveis | lib/matplotlib/cbook/__init__.py | Python | gpl-3.0 | 84,575 | [
"Gaussian"
] | 033ad94489de307c8d11937d0ab4a40f425f909fce63733b0def065c4c2d2f79 |
#!/usr/bin/env python2
#
# Copyright 2012 Unknown <diogo@arch>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
... | ODiogoSilva/TriFusion | trifusion/orthomcl_pipeline.py | Python | gpl-3.0 | 24,641 | [
"BLAST"
] | 5333c7d8032d312cc3a66f53d479e9feb079fabb942bc67d5969833d93638a81 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/cc/uccsd_t_lambda.py | Python | apache-2.0 | 9,887 | [
"PySCF"
] | 683a72bd7eafaaa617439eb2eaaadb85162ed6f7eaa4fd92407f2c1187ddeaab |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2017 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kratman/psi4public | psi4/share/psi4/databases/HSG.py | Python | gpl-2.0 | 46,440 | [
"Psi4"
] | 685d372a4461809fd8be0ace4fc81626cdcffab30a63ce6e7a463bc771472654 |
# -*- coding: utf-8 -*-
import logging
import os
import subprocess
from galaxy.datatypes.data import get_file_peek, Text
from galaxy.datatypes.metadata import MetadataElement
log = logging.getLogger(__name__)
def count_special_lines(word, filename, invert=False):
"""
searching for special 'words' using... | yhoogstrate/tools-iuc | datatypes/msa/stockholm_1_0/stockholm_1_0.py | Python | mit | 4,042 | [
"Galaxy"
] | 5a6235c2635e2dde8d3f31869fd45f28e6c220e677c02acf7ae7ce773375fb24 |
from setuptools import setup
"""
Static comments plugin for Pelican.
"""
setup(
name='pelican_comments',
version='0.0.1',
long_description=__doc__,
py_modules=['pelican_comments'],
author='Brian St. Pierre',
author_email='brian@bstpierre.org',
classifiers=[
'License :: OSI Approve... | bstpierre/pelican-comments | setup.py | Python | agpl-3.0 | 452 | [
"Brian"
] | 5bbe5a2d83fa57c9b5159b400a8097312fe80d83d4e017b8bbf86262e218d4f5 |
# Version: 0.19
"""The Versioneer - like a rocketeer, but for versions.
The Versioneer
==============
* like a rocketeer, but for versions!
* https://github.com/python-versioneer/python-versioneer
* Brian Warner
* License: Public Domain
* Compatible with: Python 3.6, 3.7, 3.8, 3.9 and pypy3
* [![Latest Version][pyp... | simongibbons/numpy | versioneer.py | Python | bsd-3-clause | 70,185 | [
"Brian"
] | 3a0cf64223b6dd955068c4fd2e7a0009e9235c4ba13f3c559d7957ac6a41eea9 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2016-2020 Satpy developers
#
# This file is part of satpy.
#
# satpy is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
# Foundation, either version 3 of the Licens... | pytroll/satpy | satpy/readers/netcdf_utils.py | Python | gpl-3.0 | 11,229 | [
"NetCDF"
] | 461a561463f8be3154d4e86b09923ef2eaa2f0650929234fda2c88007c67b8a9 |
# Copyright 2012 by Wibowo Arindrarto. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Bio.SearchIO parser for BLAST+ tab output format, with or without comments."""
import ... | poojavade/Genomics_Docker | Dockerfiles/gedlab-khmer-filter-abund/pymodules/python2.7/lib/python/Bio/SearchIO/BlastIO/blast_tab.py | Python | apache-2.0 | 33,732 | [
"BLAST",
"Biopython"
] | 60498557660afe3f7649463063dcda9bf6a17ef60e1dc949dcf99230d974b746 |
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