text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
value | license stringclasses 15
values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
"""
Interactor
This class can be used to simply managing callback resources.
Callbacks are often used by interactors with vtk and callbacks
are hard to keep track of.
Use multiple inheritance to inherit from this class to get access
to the convenience methods.
Observers for vtk events can be added through
AddObserver... | berendkleinhaneveld/Registrationshop | ui/Interactor.py | Python | mit | 1,240 | [
"VTK"
] | f7096f40b557d4ea2c2df176fc8fe62d6dffa338b4f6bb26c76c9d80ba661a0c |
import os
import mdtraj as md
import mdtraj.utils.fah
n_runs = 1
n_clones = 500 # To do: look this up via glob
project = 10466
codename = {10466:"T4", 10467:"src", 10468:"abl", 10469:"EGFR"}[project]
min_num_frames = 800
stride = 4
input_data_path = "/data/choderalab/fah/analysis/%d/concatenated_trajectories/" % pr... | kyleabeauchamp/fah-projects | code/analysis/strip_water.py | Python | gpl-2.0 | 1,265 | [
"MDTraj"
] | 979b368378a8fdb0921fbe20db51e0b10d3d7c9e3d54d9f4c990547bb674be67 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
#
# Copyright (C) 2017 Lenovo, Inc.
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Licens... | Russell-IO/ansible | lib/ansible/modules/network/cnos/cnos_conditional_command.py | Python | gpl-3.0 | 7,305 | [
"VisIt"
] | 743a3c982ded1069c9bb47ad4b9854a914adc89fdc378f064b1607fbdb4d5841 |
from algernon.neuron import Neuron
class Perceptron:
def __init__(self, n_inputs):
self.neuron = Neuron(n_inputs)
def train(self, in_set, des_out_set, max_epoch=500, des_error=0.1, learning_rate=0.1):
for epoch in range(max_epoch):
error = 0
error_weights = [0] * len(s... | andrea96/algernon | algernon/perceptron.py | Python | gpl-3.0 | 1,414 | [
"NEURON"
] | 256e798e2c30a59caebd37045ba9c25aae4ccd0e001ad1420a84e449806da252 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (C) 2006-2009 Søren Roug, European Environment Agency
#
# This is free software. You may redistribute it under the terms
# of the Apache license and the GNU General Public License Version
# 2 or at your option any later version.
#
# This program is distributed ... | agiacomolli/odfpy | setup.py | Python | apache-2.0 | 3,949 | [
"VisIt"
] | 559aa63807e2a966131dfde0db6a036bfccb52a19d856470daf264da104b0f45 |
# -*- coding: utf-8 -*-
#
# structural_plasticity.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the L... | sanjayankur31/nest-simulator | pynest/examples/structural_plasticity.py | Python | gpl-2.0 | 13,737 | [
"Gaussian",
"NEURON"
] | 3e17930b3e2ad43cc2473abc96a368b3a804e39f115471f477b00ba48aecbadc |
from pathlib import Path
import numpy as np
import pytest
import psi4
from psi4.driver.p4util.solvers import davidson_solver, hamiltonian_solver
from psi4.driver.procrouting.response.scf_products import (TDRSCFEngine,
TDUSCFEngine)
from .utils import *
## ma... | CDSherrill/psi4 | tests/pytests/test_tdscf_excitations.py | Python | lgpl-3.0 | 35,391 | [
"Psi4"
] | 77cff648c99666abb74531063c2f9527542f35532057ce41df85610a3a2e520b |
# ============================================================================
#
# Copyright (C) 2007-2010 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | kurtraschke/camelot | camelot/view/wizard/pages/__init__.py | Python | gpl-2.0 | 1,068 | [
"VisIt"
] | cfd7852a26319b313f253bbf73dab217ce7575dfaa67e6b24cedcb3f6d2dc62d |
"""Country names to ISO3166_alpha2 codes mapping
Roughly generated by the following bash script on GNU/Linux:
while read cc name; do
[ ! "$cc" ] &&
continue
out=$(isoquery $cc | cut -f3 --complement);
[ ! "$out" ] &&
out="$cc"
[ "$(echo $out | cut -f3)" = "$... | kernc/orange3-text | orangecontrib/text/country_codes.py | Python | bsd-2-clause | 9,422 | [
"BWA"
] | 1f112e0a0a4dfdaacd2165e63cb670c5395f5ea8b66b5ac8e06b120553d97169 |
import numpy as np
from utils import *
from ilqr import LQR
# implements guided policy search algorithm
# based on work of S Levine, P Abbeel
#
class GPS( object ):
def __init__( self, params ):
self.x_len = params[ 'x_len' ]
self.u_len = params[ 'u_len' ]
self.num_gaussians = params[ 'num_gaussians' ]
def ... | marcino239/gps | gps.py | Python | gpl-3.0 | 2,556 | [
"Gaussian"
] | 032940e6d1b4868a88e458d36a04876e59c7b7cda1eb7fb3ed071e17fb3af392 |
#!/usr/bin/python
## A PYTHON script to convert CRYSTAL output to Qwalk input,
## based on Qwalk crystal2qmc
##
## Author:
## Huihuo Zheng,
## Department of Physics, UIUC
## hzheng8@illinois.edu / zhenghh04@gmail.com
## Date: 02-02-2013
########################################################... | bbusemeyer/mainline | utils/crystal2qmc_wrap.py | Python | gpl-2.0 | 3,044 | [
"CRYSTAL"
] | 1e4f28a903ddf3b03291b35b4f73fa841e8c29ecb7e37319f230c5f92e356575 |
#-----------------------------------------------------------------------------
# Copyright (c) 2010-2012 Brian Granger, Min Ragan-Kelley
#
# This file is part of pyzmq
#
# Distributed under the terms of the New BSD License. The full license is in
# the file COPYING.BSD, distributed as part of this software.
#-----... | IsCoolEntertainment/debpkg_python-pyzmq | zmq/tests/test_multipart.py | Python | lgpl-3.0 | 1,579 | [
"Brian"
] | 0246b65f097b062e907d4645fa278d6c0c7c6e3d6611eeb59c657726e70e89d4 |
import glob
files = glob.glob('*.cc')
files += glob.glob('*.h')
#rep_list = ['ci_tol.h', 'civect.h', 'ciwave.h', 'globaldefs.h odometer.h', 'slaterd.h', 'structs.h']
rep_list = ['globaldefs.h', 'odometer.h']
for fn in files:
with open(fn, 'r') as f:
data = f.read()
for string in rep_list:
... | kannon92/psi4 | psi4/src/psi4/detci/replacer.py | Python | gpl-2.0 | 594 | [
"Psi4"
] | f274103c5d0b496a489c5f3ffc9bb205bb70662238c761a7084fb4db0aa2f6c6 |
from rdkit import Chem
from copy import copy
from pipelines_utils import utils
from molvs import enumerate_tautomers_smiles,canonicalize_tautomer_smiles,Standardizer
from molvs.charge import Uncharger,Reionizer
from standardiser import standardise
standardizer = Standardizer()
def _spam(n):
out=[]
for perm ... | InformaticsMatters/pipelines | src/python/pipelines/rdkit/sanify_utils.py | Python | apache-2.0 | 2,643 | [
"RDKit"
] | f00b5e763b546e68c25898e6767e0e2b251507eba9f339f28ad0d0714b4e594e |
# Copyright (C) 2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later versio... | mkuron/espresso | testsuite/scripts/tutorials/test_11-ferrofluid_1.py | Python | gpl-3.0 | 1,339 | [
"ESPResSo"
] | bce301b3db84d34a1e00b6fb12a03429b3eea6a0888b4eceb21c2f90a0a264b1 |
from lib.keras_utils import *
from lib.utils import *
from parameters import *
EPS = 1e-10 # Epsilon
MIN_CP = -2. # Minimum power index of c
MAX_CP = 2. # Maximum power index of c
SCORE_THRES = 0.9 # Softmax score threshold to consider success of attacks
PROG_PRINT_STEPS = 50 # Print progress every certain step... | chawins/aml | lib/OptCarlini.py | Python | mit | 14,164 | [
"Gaussian"
] | 5ac50621474a019a2311600f05a2a8145181b8fd242e1ad4e83117182697cf9d |
# -*- coding:utf-8 -*-
# Copyright (c) 2015, Galaxy Authors. All Rights Reserved
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
#
# Author: wangtaize@baidu.com
# Date: 2015-03-30
class ValidateException(Exception):
pass
def validate_init_service_group_req(re... | linyvxiang/galaxy | console/backend/src/console/taskgroup/helper.py | Python | bsd-3-clause | 2,337 | [
"Galaxy"
] | 097f915307fa2ef7d9ac0b1a989aa52d7ecd5b8bb852e064a585ded1789e722b |
'''
Created on 23/11/2009
@author: brian
'''
from scipysim.actors.signal import Ramp
from scipysim.actors.display import Plotter
from scipysim.actors import Channel, CompositeActor
class RampPlot(CompositeActor):
'''This example simulation connects a ramp source to a plotter.'''
def __init__(self):
''... | hardbyte/scipy-sim | scipysim/models/scripted_ramp_plot.py | Python | gpl-3.0 | 628 | [
"Brian"
] | 8988cf150b76ed0abedbf280d740c67f498c53c85892154cc39ed478c3dedae9 |
# -*- coding: utf-8 -*-
import math
import os
import tensorflow as tf
import numpy as np
import pandas as pd
import pickle
import pickle as pkl
import cv2
import skimage
import random
import tensorflow.python.platform
from tensorflow.python.ops import rnn
from keras.preprocessing import sequence
from collections import... | dricciardelli/vae2vec | capt_gen_aux_e2o.py | Python | mit | 41,104 | [
"Gaussian"
] | ccabfa26e99e4123be00454cf648cfa02f383376ead3b3950acc19d168372463 |
# coding=utf-8
# Copyright 2022 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | google-research/google-research | uflow/uflow_net.py | Python | apache-2.0 | 27,801 | [
"Gaussian"
] | 7f04cb2469e22a55b158426e9aa0b40b511d9098857f99116c773aa08c20253c |
#!/usr/bin/env python2
# Make.py tool for managing packages and their auxiliary libs,
# auto-editing machine Makefiles, and building LAMMPS
# Syntax: Make.py -h (for help)
# Notes: needs python 2.7 (not Python 3)
import sys,os,commands,re,copy
# switch abbrevs
# switch classes = created class for each switch
# lib... | qipa/lammps | src/Make.py | Python | gpl-2.0 | 70,857 | [
"LAMMPS"
] | 11c1220d2a7daacd145126c9155da830e5793967ea1f5f5b11d792665f22100e |
#! /usr/bin/env python
sources = """
eNrsvWuX3MiRKKa7flxvXe/LXl8/rw9UXC6AmWqwmzN6bN+pmaU4pJarmSEPH6vRafUtoqvQ3VBX
AUUAxe6+Wvn4u7/4H/gv+Bz/CP8b/wbHK59IVFVzNNL6HFOariogMzIzMjIyIjIy4n/9k9+9+0Hy
5i/Xt9lsWV9ks1lZld1s9u5fvfnH8XgcwbOLsrqIHr14FiXxuqkXm3nRtHGUV4sontdVu1nRb/ha
FfOuWETvyzy6Km6v62bRphEAGY3e/cmbf40ttN3i3X/y+v/4Vz/... | djds23/element_gen | runtest.py | Python | gpl-2.0 | 222,798 | [
"EPW"
] | 5746809f6c8cd171c089f3f612f24c9983afa7962a25fea55149b13509a11aaf |
#!/usr/bin/python
#
# Copyright 2015 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by... | Roshan2017/spinnaker | dev/build_release.py | Python | apache-2.0 | 24,333 | [
"ORCA"
] | 61d890cf3f43bd5803d9467025fac46561ce1ca5f134a001d65acb643d620b8a |
"""extract_time_series.py is a thin wrapper around extract_time_series.ncl which interpolations to locations and heights.
Usage:
extract_time_series.py <file>... --loc=<file> --opt=<file> --height=<h>... [--mode=<mode>] [--out=<dir>] [-h | --help] [--ncl-code=<path>] [--dry-run]
Options:
--loc=<file> ... | samwisehawkins/wrftools | util/extract_time_series.py | Python | mit | 3,657 | [
"NetCDF"
] | 572e61dcc8e44228e56a1b9c91db0ca27ef41ead66e51861cb9fa033c42a96fc |
# coding=utf-8
# Copyright 2018 The Hypebot Authors. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required... | google/hypebot | hypebot/plugins/hypejack_lib.py | Python | apache-2.0 | 15,524 | [
"CASINO"
] | 06e87332f5e59fda469dfb3ae82b05cd07badc01c313e3c20e7faf9dba4f15ea |
from __future__ import with_statement
import os
import re
import platform
import time
import fnmatch
import tempfile
from os import environ
from sos.utilities import (ImporterHelper,
import_module,
shell_out)
from sos.plugins import IndependentPlugin, Experimental... | cnewcome/sos | sos/policies/__init__.py | Python | gpl-2.0 | 13,850 | [
"VisIt"
] | f5eb2bffde239b766b88522c45a6b6bdf931e5ace922c50c5bee17406d06a7da |
"""
**hep_ml.reweight** contains reweighting algorithms.
Reweighting is procedure of finding such weights for original distribution,
that make distribution of one or several variables identical in original distribution and target distribution.
Remark: if each variable has identical distribution in two samples,
this d... | anaderi/hep_ml | hep_ml/reweight.py | Python | apache-2.0 | 11,419 | [
"Gaussian"
] | 2e7ca8ec167ae1a47491f68a06419494cb600a278c6264ad91cca2f20d1da3df |
# Tear.py
# Aaron Taylor
# Moose Abumeeiz
#
# The tear can be shot from an enemy or the main character.
# It will hurt anything of the oppisite type (enemies and good guys)
#
from pygame import *
from const import *
from random import randint
from Animation import *
class Tear:
"""Main tear class"""
def __init__(... | ExPHAT/binding-of-isaac | Tear.py | Python | mit | 2,931 | [
"MOOSE"
] | d34f606c3f0457d31394cee6e4b5bb11e302635190ba581b922d14595d41e8b0 |
# Copyright 2009 Brian Quinlan. All Rights Reserved.
# Licensed to PSF under a Contributor Agreement.
from __future__ import with_statement
import logging
import threading
import time
from concurrent.futures._compat import reraise
try:
from collections import namedtuple
except ImportError:
from concurrent.fu... | LockScreen/Backend | venv/lib/python2.7/site-packages/concurrent/futures/_base.py | Python | mit | 20,830 | [
"Brian"
] | 086d538016cdf23c03514a4ede24a5d85df6dcab9604e3426c91793fe71b5689 |
# -*- coding: utf-8 -*-
"""
ORCA Open Remote Control Application
Copyright (C) 2013-2020 Carsten Thielepape
Please contact me by : http://www.orca-remote.org/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as publi... | thica/ORCA-Remote | src/ORCA/download/LoadOnlineResource.py | Python | gpl-3.0 | 9,233 | [
"ORCA"
] | e8d59f8fc3333a114783b75b2f4bd498661864053d9a68b4d1d546a54736e5e7 |
import astropy.io.fits as pf
import os
import numpy as np
from copy import deepcopy
from itertools import chain
import unittest
import healpy as hp
import warnings
# disable new order warnings in tests
warnings.filterwarnings("ignore")
class TestSphtFunc(unittest.TestCase):
def setUp(self):
self.lmax ... | cjcopi/healpy | healpy/test/test_sphtfunc.py | Python | gpl-2.0 | 14,940 | [
"Gaussian"
] | be3434b71f88cedd90a94ef0c379bb98c058ac61c903440a988d20f23bc6f0da |
'''Nest-specific implementation of the grid cell model.
.. currentmodule:: grid_cell_model.models.gc_net_nest
Classes
-------
.. autosummary::
NestGridCellNetwork
BasicGridCellNetwork
ConstantVelocityNetwork
PosInputs
ConstPosInputs
'''
from __future__ import absolute_import, print_function
impo... | MattNolanLab/ei-attractor | grid_cell_model/models/gc_net_nest.py | Python | gpl-3.0 | 40,776 | [
"Brian",
"NEURON"
] | 399ac71f0e5175afea649f2f49674aecae44f4177472693b9169c933c8c49e1a |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Wed Sep 19 13:46:56 2018
@author: alex
"""
import re
import numpy as np
import logging
from .ParserData import MolecularOrbitals, Amplitudes
from .QCBase import QCMethod, VarNames as V
from .QCBase import var_tag
from .ParserTools import is_float
# create... | spectre007/CCParser | Gaussian.py | Python | mit | 6,469 | [
"Gaussian"
] | 4d2d0f4a0592a85f9930c03fdc9f912b0036a43c614fcecd2bc04760c61e58fc |
###############################
# This file is part of PyLaDa.
#
# Copyright (C) 2013 National Renewable Energy Lab
#
# PyLaDa is a high throughput computational platform for Physics. It aims to make it easier to submit
# large numbers of jobs on supercomputers. It provides a python interface to physical input, suc... | pylada/pylada-light | src/pylada/vasp/emass.py | Python | gpl-3.0 | 16,450 | [
"CRYSTAL",
"VASP"
] | b626c193fc967b63cd3467747e1edb41998e5b09aefd63016dadaeff9ab7592b |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# (c) 2018, Chris Houseknecht <@chouseknecht>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': '1.1',
... | cyberark-bizdev/ansible | lib/ansible/modules/clustering/openshift/openshift_raw.py | Python | gpl-3.0 | 5,342 | [
"Galaxy"
] | 6ee8c7013f1996e1e0a4d037e1b680a3e8c1c771c3f190c993d98548a6ed0fb4 |
# This sucks!
print('Version 0.03. This is the latest version.')
print('Please help me to improve it reporting bugs to guido.sterbini@cern.ch.')
# Fixes with respect to v0.2.
# unixtime2datetimeVectorize modified len with np.size
# Fixes with respect to v0.1.
# Fixed the bug of the local/UTC time in importing the matl... | sterbini/MDToolbox | myToolbox.py | Python | mit | 35,677 | [
"Gaussian"
] | e1e818ab3b489a9743647570d3fbeb09b07b90a1de8c2fcf5ffc111d1fa31dc4 |
#
# Copyright (c) 2016 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yasharmaster/scancode-toolkit | src/textcode/strings.py | Python | apache-2.0 | 8,700 | [
"VisIt"
] | d3468ff7688e949729512574e46e0b0737bf2bfc1df179588eaca1d0f5b0bfad |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# this script tests vtkImageReslice with different slab modes
# Image pipeline
reader = vtk.vtkImageReader()
reader.ReleaseDataFlagOff()
reader.SetDataByteOrderToLittleEndian()
reader... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Imaging/Core/Testing/Python/ResliceSlabModes.py | Python | gpl-3.0 | 3,551 | [
"VTK"
] | 46c8ebb65a9c5bc88cb626f2a95795b1383f433263df2136c71fe5b2eac88727 |
### All lines that are commented out (and some that aren't) are optional ###
DB_ENGINE = 'sqlite:///db.sqlite'
#DB_ENGINE = 'mysql://user:pass@localhost/monocle'
#DB_ENGINE = 'postgresql://user:pass@localhost/monocle
AREA_NAME = 'SLC' # the city or region you are scanning
LANGUAGE = 'EN' # ISO 639-1 codes E... | sebast1219/Monocle | config.example.py | Python | mit | 16,723 | [
"VisIt"
] | 7e5f4a2422a2813adb9547e43e273519ba7c1c5c996d12919050e8257c2ac80d |
"""
==============================================
Plot randomly generated classification dataset
==============================================
Plot several randomly generated 2D classification datasets.
This example illustrates the :func:`datasets.make_classification`
:func:`datasets.make_blobs` and :func:`datasets.... | RPGOne/Skynet | scikit-learn-0.18.1/examples/datasets/plot_random_dataset.py | Python | bsd-3-clause | 2,254 | [
"Gaussian"
] | 1f2d258b7bb117fb25c445e02c1b6fb090c7a4daf63714caa6e5b9ce368e9c15 |
tests = [
("python", "test_list.py", {'dir': 'ML'}),
("python", "test_list.py", {'dir': 'Chem'}),
("python", "test_list.py", {'dir': 'DataStructs'}),
("python", "test_list.py", {'dir': 'Dbase'}),
("python", "test_list.py", {'dir': 'SimDivFilters'}),
("python", "test_list.py", {'dir': 'VLib'}),
("python", ... | rvianello/rdkit | rdkit/test_list.py | Python | bsd-3-clause | 578 | [
"RDKit"
] | fdf32d85bfb93e777b68fdaec205c5cc39c617249a163324bdf4cc156dca0c70 |
# -*- coding: utf-8 -*-
"""
sphinx.apidoc
~~~~~~~~~~~~~
Parses a directory tree looking for Python modules and packages and creates
ReST files appropriately to create code documentation with Sphinx. It also
creates a modules index (named modules.<suffix>).
This is derived from the "sphinx-aut... | baharev/apidocfilter | hacked.py | Python | bsd-3-clause | 18,605 | [
"VisIt"
] | 4663ecfd8b00063d85ab8c9161365115d83fcf3f40a15dc39088a44f4505c8d8 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | fedepad/espressopp | src/esutil/Grid.py | Python | gpl-3.0 | 1,408 | [
"ESPResSo"
] | 3c2adc70a8f5d1037548b6d2be1de2c140d7f32ba59c011918e8dd1e8905ecb1 |
# Copyright 2017 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | duftler/spinnaker | dev/validate_bom__test.py | Python | apache-2.0 | 44,197 | [
"ORCA"
] | c786efbf8f4a933dfaf4dac6957fd32071ecd59afa7714dfc4953faa7ece9667 |
import django_tables2 as tables
from django_tables2.utils import A, Accessor
from mmg.jobtrak.links.models import *
from django.utils.translation import ugettext_lazy as _
import external_urls
class JobBoardTable(tables.Table):
url = tables.TemplateColumn(
'<a href="{% load external_urls %}{% external_url ... | MarconiMediaGroup/JobTrak | web/code/mmg/jobtrak/links/tables.py | Python | apache-2.0 | 758 | [
"VisIt"
] | 586d4d812c100aaf13f7352ec457be92a09d88bb7c5815ca463ad6e851b2ba99 |
"""Phonon band-structure for silicon using the Appelbaum-Hamann PP.
For comparison, see e.g.:
* Phys. Rev. B 43, 7231 (1991).
"""
import numpy as np
import pylab as plt
import ase.units as units
from ase.dft.kpoints import ibz_points, get_bandpath
from gpaw.mpi import rank, world
from gpaw.dfpt import PhononC... | qsnake/gpaw | gpaw/test/big/dfpt/Si_bandstructure.py | Python | gpl-3.0 | 1,888 | [
"ASE",
"GPAW"
] | fde80706b7d298bf52d5de22d360dc18b262f57b696db8d97be5df31907ce458 |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
try:
import builtins as builtin
except ImportError:
import __builtin__ as builtin
from os.path import getmtime, exists
import time
import types
from Cheetah.Version import MinCompatib... | pli3/e2-openwbif | plugin/controllers/views/mobile/channels.py | Python | gpl-2.0 | 7,404 | [
"VisIt"
] | cba79259b4bce69bcb95250648af7a6594a16a1f6ba2fb84a71533edae596496 |
"Test the RawRadialDistributionFunction function."
from numpy import *
from asap3 import *
from asap3 import _asap
from ase.lattice.compounds import NaCl
from asap3.testtools import *
from asap3.Internal.ListOfElements import ListOfElements
print_version(1)
# testtypes: latticeconst, maxRDF, bins, useEMT
testtypes =... | auag92/n2dm | Asap-3.8.4/Test/RawRDF2.py | Python | mit | 2,068 | [
"ASE"
] | 443e00c9115252b78c41ec131b0404d0076d09345e64af07a76526c9f5ed495c |
# -*- coding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "L... | ddna1021/spark | python/pyspark/ml/tests.py | Python | apache-2.0 | 114,903 | [
"Gaussian"
] | ce6b8a444818085cbeffa5d9ccbd3a2595cafcd60fe2bcf77635df2baff4c197 |
#!/usr/bin/python
# coding=utf-8
# Release script for LIAM2
# Licence: GPLv3
from __future__ import print_function
import errno
import fnmatch
import os
import re
import stat
import subprocess
import urllib
import zipfile
from datetime import date
from os import chdir, makedirs
from os.path import exists, getsize, ab... | cbenz/liam2 | make_release.py | Python | gpl-3.0 | 21,316 | [
"TINKER"
] | 78bb577200ee7c836f1fd6578258e0984c312775fa8a25a88412cc0102763529 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Development script of the ChemEnv utility to get the explicit permutations for coordination environments identified
with the explicit permutations algorithms (typically with coordination numbers <= 6)
"""
... | gVallverdu/pymatgen | dev_scripts/chemenv/explicit_permutations.py | Python | mit | 3,736 | [
"pymatgen"
] | 1fdda7bbde85cef6e12d5f64bdce66a191741363c3bdaf689c287473c483720e |
"""
Pawel Potocki - vtk surface canvas
"""
import copy
import math
import numpy
import vtk
import logging
import functools32 as func
import colors
logging.basicConfig(format='%(asctime)s: %(levelname)s: %(message)s', level=logging.DEBUG)
def colorAsFloatValues(color):
""" convert color values """
return co... | viz4biz/PyDataNYC2015 | vtklib/vtk_surface.py | Python | apache-2.0 | 42,076 | [
"VTK"
] | e1e276305e5d5cab93914fb209be2a8c33e78a583bb436ab5f3d636571205f5d |
import numpy as np
import itertools
class Structure:
def __init__(self,
positions=None,
scaled_positions=None,
masses=None,
cell=None,
force_sets=None,
force_constants=None,
atomic_numbers=None,... | abelcarreras/DynaPhoPy | dynaphopy/atoms.py | Python | mit | 20,666 | [
"CRYSTAL"
] | 52e3d03a7f8a4121ef013419a73ce024ce6a28dc380b7ab0cbbbadf9375fb269 |
"""Support for control of ElkM1 sensors."""
from elkm1_lib.const import (
SettingFormat,
ZoneLogicalStatus,
ZonePhysicalStatus,
ZoneType,
)
from elkm1_lib.util import pretty_const, username
import voluptuous as vol
from homeassistant.components.sensor import SensorEntity
from homeassistant.const import... | sander76/home-assistant | homeassistant/components/elkm1/sensor.py | Python | apache-2.0 | 9,367 | [
"Elk"
] | 33c3f7a4232e180a49a92eeb3e34c191cfa86987353af502e46d9a89d90172ec |
#
# Bare-bones re-implementation of CMA-ES.
#
# This file is part of PINTS (https://github.com/pints-team/pints/) which is
# released under the BSD 3-clause license. See accompanying LICENSE.md for
# copyright notice and full license details.
#
import numpy as np
import pints
import warnings
from numpy.linalg import n... | martinjrobins/hobo | pints/_optimisers/_cmaes_bare.py | Python | bsd-3-clause | 13,798 | [
"Gaussian"
] | bafd401246e41b9bb4114fa5842b2e36bcef6132c6136f16b4f3fabc8a2bfd2e |
import numpy as np
from ase import Atoms
from ase.constraints import FixAtoms
from ase.calculators.emt import EMT
from ase.neb import NEB
from ase.visualize import view
from ase.optimize.fire import FIRE as QuasiNewton
from ase.lattice.surface import surface
from ase.lattice.cubic import FaceCenteredCubic
#set the num... | misdoro/python-ase | doc/tutorials/neb/idpp4.py | Python | gpl-2.0 | 2,077 | [
"ASE"
] | 05fcfabfe30c128884367f2b017e5fcc1fdbf247bc488ba8e46cf6bcfd9453b5 |
from PyQt4.Qt import *
from numpy import *
import Avogadro
import sys
import unittest
from util import *
class TestCamera(unittest.TestCase):
def setUp(self):
# create the GLWidget and load the default engines
self.glwidget = Avogadro.GLWidget()
self.glwidget.loadDefaultEngines()
self.molecule ... | rcplane/periodicdisplay | reference/avogadro/libavogadro/src/python/unittest/camera.py | Python | gpl-2.0 | 2,353 | [
"Avogadro"
] | e436acf2ff7a2dd60f5e59fd8db3372b6ed1569fac369a6905825ba0db9de3ff |
# -*- coding: utf-8 -*-
"""
Climate Data Module
@author: Mike Amy
"""
from calendar import isleap
from collections import OrderedDict
from datetime import date, timedelta
from math import floor
from gluon import current
# @ToDo: Nasty!
db = current.db
same = lambda x: x
# keyed off the units field in the ... | flavour/ifrc_qa | modules/ClimateDataPortal/__init__.py | Python | mit | 17,081 | [
"NetCDF"
] | 914cd75e0f5a90eeb70ae3060261a20e87bc0e6bde4d1403b4eae8417413cf50 |
class Node(object):
_fields = tuple()
def __init__(self):
self.__info__ = {}
def is_ancestor_of(self, other):
if self is other:
return True
for value in self.__dict__.values():
if isinstance(value, list):
for item in value:
... | kyouko-taiga/tango | tango/ast.py | Python | apache-2.0 | 26,571 | [
"VisIt"
] | 88e90e6d46b78c4196ca871c491be4f23a1503b096c4886937e85956e6c35696 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
from django.conf import settings
import hs_core.models
class Migration(migrations.Migration):
dependencies = [
('auth', '0001_initial'),
('pages', '__first__'),
migrations.swappable_d... | FescueFungiShare/hydroshare | hs_app_netCDF/migrations/0001_initial.py | Python | bsd-3-clause | 7,033 | [
"NetCDF"
] | 24f64360901edef9e5939758c339e58164059902178f6e8f883da4ebea9d05ed |
#!/usr/bin/python3
# Copyright (C) 2007-2010 www.stani.be
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This pr... | Curly060/Cinnamon | files/usr/share/cinnamon/cinnamon-settings/bin/imtools.py | Python | gpl-2.0 | 39,628 | [
"Gaussian"
] | 688240100ff8e9fc9e7dde02158c351b366bdeeecf4091bbd07c8993e7af17ca |
import os.path
import pysam
__program__ = 'prepare'
__author__ = 'Soh Ishiguro <yukke@g-language.org>'
__license__ = ''
__status__ = 'development'
class AlignmentPreparation(object):
def __init__(self):
# TODO: AlignmentStream.__init__ move into here.
pass
def alignment_prepare(self)... | soh-i/Ivy | src/Ivy/alignment/prepare.py | Python | gpl-2.0 | 1,568 | [
"pysam"
] | a59d4e4537a82e43b48633176759a6efa3dce70b66a7d8689f51cf4d5209969d |
"""Class for making requests to a ComponentMonitoring Service."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
from DIRAC.Core.Base.Client import Client, createClient
@createClient('Framework/ComponentMonitoring')
class ComponentMoni... | yujikato/DIRAC | src/DIRAC/FrameworkSystem/Client/ComponentMonitoringClient.py | Python | gpl-3.0 | 531 | [
"DIRAC"
] | 8e1de74d37832428329acc5d683be8de5e4b1d8f9fc09458de4f16262feb9c6e |
"""
==========================================
Statistical functions (:mod:`scipy.stats`)
==========================================
.. module:: scipy.stats
This module contains a large number of probability distributions as
well as a growing library of statistical functions.
Each included distribution is an instanc... | maciejkula/scipy | scipy/stats/__init__.py | Python | bsd-3-clause | 9,213 | [
"Gaussian"
] | f1bcc13dd272a8a65021cb8f82ff725715dae470aa3e5eb741abf9eec3685127 |
#!/usr/bin/env python
#=============================================================================================
# MODULE DOCSTRING
#=============================================================================================
"""
Physical property estimation API.
Authors
-------
* John D. Chodera <john.chodera@... | bmanubay/open-forcefield-tools | openforcefield/propertyestimator.py | Python | mit | 5,436 | [
"OpenMM"
] | ac7287cb069dc9dbde70e989cda4fcd3bf694334c5de86356f89ddc87757aff4 |
################################################################################
# Copyright (C) 2015 Jaakko Luttinen
#
# This file is licensed under the MIT License.
################################################################################
"""
Black-box variational inference
"""
import numpy as np
import sc... | SalemAmeen/bayespy | bayespy/demos/black_box.py | Python | mit | 3,429 | [
"Gaussian"
] | d46ab69e4bc85a813895465a93540fa10fe727cb3636001d9f7a4f742ea0e06d |
#!/usr/bin/python3
"""
Local Laplacian, see e.g. Aubry et al 2011, "Fast and Robust Pyramid-based Image Processing".
"""
from __future__ import division # if running with python2
from halide import *
import numpy as np
from scipy.misc import imread, imsave
import os.path
int_t = Int(32)
float_t = Float(32)
def g... | ronen/Halide | python_bindings/apps/local_laplacian.py | Python | mit | 8,634 | [
"Gaussian"
] | 9b86c182161c54c83a58f6ab6bfdf8b9c4b6a5b033bdd9cff6f6b62858df75c1 |
#!/usr/bin/env python
import argparse
import sys
import time
from contact_utils import *
from traj_utils import load_Trajs_generator
parser = argparse.ArgumentParser(usage="""{} Trajs*.nc Topology.prmtop""".
format(sys.argv[0]),
epilog="""Load up a li... | jeiros/Scripts | AnalysisMDTraj/contacts.py | Python | mit | 3,435 | [
"Amber",
"MDTraj",
"NetCDF"
] | 0116fa01829c61c3b52163f9db4a0156760f823cf0b2d652c1ac108cd8c7ce19 |
import time
import splinter
from lettuce import step,before,world,after
from lettuce.django import django_url
from django.contrib.auth.models import User
from frontend.models import UserProfile, Feature
from nose.tools import assert_equals
# Steps used in more than one feature's steps file
# Human readable CSS selec... | rossjones/ScraperWikiX | web/frontend/features/common_steps.py | Python | agpl-3.0 | 3,493 | [
"VisIt"
] | ca5a88344818e23c75eae1eb5ebc9d516ca3443d7667a9f036309f416c37be99 |
#
# Attempting to replicate lane detection results described in this tutorial by Naoki Shibuya:
# https://medium.com/towards-data-science/finding-lane-lines-on-the-road-30cf016a1165
# For more see: https://github.com/naokishibuya/car-finding-lane-lines
#
# This 2nd version does a much better job of processing images.
... | guydavis/lane-detect | older/lane_detect.v2.py | Python | mit | 6,587 | [
"Gaussian"
] | 358b0fc8d024ec40d2481e97297b8cf92abb76cbadbe763d8e1a7b3a04f2bacb |
#!/usr/bin/env python
'''
Run the charged system with Makov-Payne correction.
'''
import numpy
from pyscf.pbc import gto, scf
cell = gto.M(atom='Al 0 0 0', basis='lanl2dz', ecp='lanl2dz',
spin=0, a=numpy.eye(3)*6, charge=1, dimension=3)
mf = scf.RHF(cell)
mf.run()
| gkc1000/pyscf | examples/pbc/28-charged_system.py | Python | apache-2.0 | 281 | [
"PySCF"
] | 03324096b895fff0669e6475575243e39ab12354540d216f3f5d6abc9df5b40c |
"""
A simple VTK widget for PyQt or PySide.
See http://www.trolltech.com for Qt documentation,
http://www.riverbankcomputing.co.uk for PyQt, and
http://pyside.github.io for PySide.
This class is based on the vtkGenericRenderWindowInteractor and is
therefore fairly powerful. It should also play nicely with the
vtk3DWi... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Wrapping/Python/vtk/qt/QVTKRenderWindowInteractor.py | Python | gpl-3.0 | 18,922 | [
"CRYSTAL",
"VTK"
] | fb4b7d494860d4ee09488b624deb0d58fa76368f3243890eb20b57882ad54832 |
from FactorySystem import InputParameters
import os, sys, shutil
# Get the real path of cluster_launcher
if(os.path.islink(sys.argv[0])):
pathname = os.path.dirname(os.path.realpath(sys.argv[0]))
else:
pathname = os.path.dirname(sys.argv[0])
pathname = os.path.abspath(pathname)
# Add the utilities/python_getpot... | xy515258/moose | python/ClusterLauncher/Job.py | Python | lgpl-2.1 | 1,889 | [
"MOOSE"
] | 85d4abc266feab0e0137dba06955d00d39368f69f960e3f886600c1c6cd28c6e |
import os
import warnings
# cmr calls all available methods in ase.atoms detected by the module inspect.
# Therefore also deprecated methods are called - and we choose to silence those warnings.
warnings.filterwarnings('ignore', 'ase.atoms.*deprecated',)
from ase.test import NotAvailable
# if CMR_SETTINGS_FILE is mis... | grhawk/ASE | tools/ase/test/cmr/reactions_xsimple.py | Python | gpl-2.0 | 2,261 | [
"ASE"
] | ff0bad4be811a65418bba59be42506a864460029be94e2fc531aad890af9aa43 |
#!/usr/bin/env python
# Copyright 2012 Google Inc. All Rights Reserved.
"""Bigquery Client library for Python."""
import abc
import collections
import datetime
import hashlib
import itertools
import json
import logging
import os
import pkgutil
import random
import re
import string
import sys
import textwrap
import ... | harshilasu/LinkurApp | y/google-cloud-sdk/platform/bq/bigquery_client.py | Python | gpl-3.0 | 86,264 | [
"VisIt"
] | eac6915d7546818215e1c85721826401bec304d4873ba88d6ff0f8d677a08a33 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | memo/tensorflow | tensorflow/contrib/bayesflow/python/kernel_tests/monte_carlo_test.py | Python | apache-2.0 | 7,220 | [
"Gaussian"
] | bb4050e73c54c560332c7b2bdc869ea66dd52ca643f7b3743c9cdc0820f90568 |
# -*- coding: utf-8 -*-
# Copyright (C) Brian Moe (2013-2014), Duncan Macleod (2014-)
#
# This file is part of LIGO CIS Core.
#
# LIGO CIS Core is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 ... | lscsoft/cis.server | cisserver/admin.py | Python | gpl-3.0 | 2,088 | [
"Brian",
"MOE"
] | d15d3cd7a835a5e443d2a0f32e32ea828373abc65d1407a8c15cb3b09c6ac49e |
#!/usr/bin/env python
# CREATED:2013-03-08 15:25:18 by Brian McFee <brm2132@columbia.edu>
# unit tests for librosa.feature (feature.py)
#
# Run me as follows:
# cd tests/
# nosetests -v
#
# This test suite verifies that librosa core routines match (numerically) the output
# of various DPWE matlab implementations o... | craffel/librosa | tests/test_filters.py | Python | isc | 10,149 | [
"Brian"
] | a9a9e08c2b5b670359f3944fa2da0e2aaf69ba8956e49aa0e479e1437f1b939b |
########################################################################
#
# (C) 2013, James Cammarata <jcammarata@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software ... | dochang/ansible | lib/ansible/cli/galaxy.py | Python | gpl-3.0 | 30,367 | [
"Galaxy"
] | 431c1961f910a20b7d6935b946de19fd2262bc9c09acf668eb75101d3f35d955 |
#!/usr/bin/env python3
#pylint: disable=missing-docstring
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
... | nuclear-wizard/moose | python/chigger/tests/colorbar/zero_range.py | Python | lgpl-2.1 | 678 | [
"MOOSE"
] | 6bc14fb772539b329270bcb108c36281b8bb987e7f859c2b4e7de75c0b335505 |
"""
Implementation of the class `OpenFOAMSimulation`.
"""
import os
import numpy
from scipy import signal
from matplotlib import pyplot
from ..simulation import Simulation
from ..force import Force
class OpenFOAMSimulation(Simulation):
"""
Contains info about a OpenFOAM simulation.
Inherits from class Simula... | mesnardo/snake | snake/openfoam/simulation.py | Python | mit | 14,299 | [
"ParaView"
] | 660524f9c5632754b79b9a0fcb408b7dfbe181db5f95069c926ace7311ef8dd6 |
import numpy as np
def log(sigma=1., shape=None): # Laplacien of Gaussian
if shape is None:
width = int(np.ceil(3 * sigma))
shape = (width, width)
result = np.zeros(shape)
nbinx = shape[0]
xmin = -(nbinx - 1) / 2
x = np.arange(xmin, -xmin + .1, 1)
nbiny = shape[1]
ymin = -... | calispac/digicampipe | digicampipe/image/lidccd/kernels.py | Python | gpl-3.0 | 1,906 | [
"Gaussian"
] | c2715cd1b2d81ce08d115c7f5e2bf802a21cc84cacc9111ae898eb878e0b6edb |
import ocl
import camvtk
import time
import vtk
import datetime
if __name__ == "__main__":
myscreen = camvtk.VTKScreen()
stl = camvtk.STLSurf("../stl/demo.stl")
print "STL surface read"
myscreen.addActor(stl)
stl.SetWireframe()
stl.SetColor((0.5,0.5,0.5))
polydata = stl.src.GetO... | AlanZatarain/opencamlib | src/attic/pfinish_tst_1.py | Python | gpl-3.0 | 3,278 | [
"VTK"
] | fa374b1f2a7cd1c45ccba22acf291c28948b3ee75127abf1a3e7f042f1046551 |
# -*- coding: utf-8 -*-
"""
Subsubmodule for ecg processing.
"""
import numpy as np
import pandas as pd
import biosppy
import scipy
from .bio_rsp import *
from ..signal import *
from ..materials import Path
from ..statistics import *
# ==============================================================================
# ... | neuropsychology/NeuroKit.py | neurokit/bio/bio_ecg_preprocessing.py | Python | mit | 23,113 | [
"Gaussian"
] | 7e602c64974c4f739863056ff53533ee98b5a7cddfd623efeea151f2542a3cd4 |
# -*- coding: utf-8 -*-
############################################################################
#
# Copyright (C) 2011-2014
# Christian Kohlöffel
#
# This file is part of DXF2GCODE.
#
# DXF2GCODE is free software: you can redistribute it and/or modify
# it under the terms of the GNU General P... | Poofjunior/dxf2gcode | gui/messagebox.py | Python | gpl-3.0 | 2,949 | [
"VisIt"
] | b53eb1763d9de4b40925780faf76288d5b7debb99494ce8650e44ba5d82c5dce |
#!/usr/bin/env python
# -*- coding: iso-8859-1 -*-
#
# $Id: e8192a9e9900106561cd9a10220ad0521cfa1582 $
"""
sqlcmd - a simple SQL command interpreter
Requires:
- The Grizzled Python API (http://www.clapper.org/software/python/grizzled/)
- One or more Python DB API drivers. See the Grizzled "db" package.
- The enum pa... | ychen820/microblog | y/google-cloud-sdk/platform/google_appengine/lib/sqlcmd/sqlcmd/__init__.py | Python | bsd-3-clause | 61,025 | [
"Brian"
] | a2326eeabe6650a280ce500bad2d2682bcce72178f4c616ac59234d65d1bc0c9 |
# -*- coding: utf-8 -*-
# Copyright © 2014 Roberto Alsina and others.
# Permission is hereby granted, free of charge, to any
# person obtaining a copy of this software and associated
# documentation files (the "Software"), to deal in the
# Software without restriction, including without limitation
# the rights to use... | getnikola/plugins | v7/emoji/emoji.py | Python | mit | 27,893 | [
"Bowtie",
"Octopus"
] | 82eab70c026a064da2df3ec43a1b6c46f2297a1d2b8c91ba07ec32a2e6e0c97b |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
################################################################################
#
# ChemPy - A chemistry toolkit for Python
#
# Copyright (c) 2010 by Joshua W. Allen (jwallen@mit.edu)
#
# Permission is hereby granted, free of charge, to any person obtaining a
# co... | jwallen/ChemPy | setup.py | Python | mit | 2,948 | [
"ChemPy"
] | bce72303fe97a18a97a6ba41bc3071d911eca71cf83ad6fdc9e007151fab96b5 |
#!/usr/bin/env python
# Copyright 2013 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""The frontend for the Mojo bindings system."""
import argparse
import imp
import os
import pprint
import sys
script_dir = os.path.... | ChromiumWebApps/chromium | mojo/public/bindings/mojom_bindings_generator.py | Python | bsd-3-clause | 3,912 | [
"VisIt"
] | 113932cedcbdb48607b0f02729162b36cdd2c8a34f661efc4037f51bd093c3a7 |
from dirac.lib.base import *
from dirac.lib.diset import getRPCClient
from dirac.lib.credentials import authorizeAction, getUsername, getSelectedGroup
from DIRAC.Core.Utilities.List import uniqueElements
from DIRAC import gConfig, gLogger
from DIRAC import S_OK, S_ERROR
from DIRAC.FrameworkSystem.Client.UserProfileClie... | DIRACGrid/DIRACWeb | dirac/controllers/web/Presenter.py | Python | gpl-3.0 | 23,286 | [
"DIRAC"
] | 284b14b098630270fba5a7193e54662ffdcb75c4e4f55e034f50d921c13e97ad |
from __future__ import absolute_import
from datetime import datetime
import six
import pytz
import pytest
from django.utils import timezone
from sentry.testutils import AcceptanceTestCase, SnubaTestCase
from sentry.testutils.helpers.datetime import iso_format, before_now
from sentry.utils.compat.mock import patch
f... | beeftornado/sentry | tests/acceptance/test_organization_global_selection_header.py | Python | bsd-3-clause | 20,258 | [
"VisIt"
] | 271b5a49759628b5ca5bca8e41bc739b9151e9d35e0c1700e81f99c5002dba26 |
## \file
## \ingroup tutorial_roofit
## \notebook
## Addition and convolution: options for plotting components of composite pdfs.
##
## \macro_code
##
## \date February 2018
## \authors Clemens Lange, Wouter Verkerke (C++ version)
import ROOT
# Set up composite pdf
# --------------------------------------
# Declare ... | root-mirror/root | tutorials/roofit/rf205_compplot.py | Python | lgpl-2.1 | 4,541 | [
"Gaussian"
] | dfad4d164d8be79ab5887d26905da075207cde072902162863618e1002c61c00 |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-orchestration-airflow | tests/unit/gapic/service_v1/test_environments.py | Python | apache-2.0 | 97,014 | [
"Octopus"
] | 63a9a998af4c754f213305e030ec9023e5d8a3dea035d8876b1fd969a8c1f2ca |
##
# Copyright 2009-2016 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be),
# Flemish Research Foundation (F... | hpcleuven/easybuild-easyblocks | easybuild/easyblocks/d/dirac.py | Python | gpl-2.0 | 5,737 | [
"DIRAC"
] | 415905ee4144768533ac57fc5243ba6535ffd5cb2a4c9136f4142b3ce334ab4a |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4 fileencoding=utf-8
#
# MDAnalysis --- https://www.mdanalysis.org
# Copyright (c) 2006-2017 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#... | MDAnalysis/mdanalysis | testsuite/MDAnalysisTests/analysis/test_dihedrals.py | Python | gpl-2.0 | 8,616 | [
"MDAnalysis"
] | 4748a2f0274a77770053298b278c8af7c9f22742d61dfab09f332a0b8848da4f |
"""
Script to verify all examples in the readme.
Simply execute
python test_readme_examples.py
"""
from __future__ import print_function, division
import numpy as np
from scipy import misc
def main():
example_standard_situation()
example_heavy_augmentations()
example_show()
#example_grayscale()
... | nektor211/imgaug | tests/test_readme_examples.py | Python | mit | 17,754 | [
"Gaussian"
] | 11c233333ef9c45938066a3773b7623b8ce72008b00acda0961b8030f7009413 |
"""
Unit tests for masquerade.
"""
import json
import pickle
from datetime import datetime
from django.conf import settings
from django.core.urlresolvers import reverse
from django.test import TestCase
from mock import patch
from pytz import UTC
from capa.tests.response_xml_factory import OptionResponseXMLFactory
fro... | proversity-org/edx-platform | lms/djangoapps/courseware/tests/test_masquerade.py | Python | agpl-3.0 | 21,271 | [
"VisIt"
] | c0d8fea871c153758c6e1e28875770802f029d73f6fb4de35bc3d1dc1ad46484 |
#!/usr/bin/python
# guess the number in the palm of your friend.
# break - break is way of coming out of the loop abruptly.
# sys.exit - take your out of the program.
# task: restrict the people to max tries for 3 times
import sys
number = 7
#test = True # boolean
answer = raw_input("Do you want to play the game: y/... | tuxfux-hlp-notes/python-batches | archieves/Batch-63/04-guess_number.py | Python | gpl-3.0 | 851 | [
"VisIt"
] | cb7d3362a31cb35fdf7d6b7ff2e133ef0c969a368fa0abf8a8099a5cf323e986 |
from mdtraj.geometry import alignment
import numpy as np
def compute_atomwise_deviation_xyz(X_xyz,Y_xyz):
''' given two sets of coordinates as numpy arrays,
align them and return the vector of distances between
corresponding pairs of atoms'''
X_prime = alignment.transform(X_xyz, Y_xyz)
delta = X_pr... | maxentile/msm-learn | projects/metric-learning/weighted_rmsd.py | Python | mit | 3,197 | [
"MDTraj"
] | 8c9c95c4e8f5ba954b5d0fe87da97c677e063abdaaa2ca6d0c8b5a90ba6455b9 |
#!/usr/bin/env python
# (c) 2015-2018, ETH Zurich, Institut fuer Theoretische Physik
# Authors: Georg Winkler, Dominik Gresch <greschd@gmx.ch>
import numpy as np
import scipy.linalg as la
import tbmodels as tb
import pymatgen as mg
import pymatgen.symmetry.analyzer
import symmetry_representation as sr
def spin_reps... | Z2PackDev/TBmodels | examples/cmdline/symmetrization/generate_symmetries.py | Python | apache-2.0 | 4,636 | [
"pymatgen"
] | f334e48ef8f24c3e7c4140ffb3712cb92bf060ee842d7cad68f62d0f5fe89e47 |
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