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import neurokernel.mpi_relaunch
import scipy.io as io
from libSpineML2NK import nk_executable
from libSpineML import smlExperiment
import numpy as np
import pdb
e = nk_executable.Executable('./experiment0.xml')
exp = e.bundle.experiments[0].Experiment[0]
ai = exp.AbstractInput[0]
mutant = io.loadmat('data/MutantBG6Da... | AdamRTomkins/libSpineML2NK | libSpineML2NK/examples/Narx/Narx_Python/run_python_params.py | Python | gpl-3.0 | 4,162 | [
"NEURON"
] | a12c6d6f89baaad01acc869139cf4e58900fdb64aa6b0b3f63028a2115423918 |
#!/usr/bin/env python
"""
Author: Shane Bussmann, T. K. Daisy Leung
Similar to uvmcmcfit.py, but here we edited it to
- throw out a pre-defined number of burn-in samples;
- save acceptance_fraction + misc stuff as a separate file
- only save samples every some number of samples (instead of every iteratio... | astro313/uvmcmcfit | uvmcmcfit.py | Python | mit | 26,614 | [
"Gaussian"
] | 6da86e0e84db89ff68fc2d2435fc82cb7e4800f4233c22f94e80359d3d83590e |
# coding=utf-8
# Copyright 2018 The DisentanglementLib Authors. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Un... | google-research/disentanglement_lib | disentanglement_lib/postprocessing/postprocess.py | Python | apache-2.0 | 5,854 | [
"Gaussian"
] | 63a743e9a2a53619ac050af1fbf2f93320d6536cc6bc2a777f1fdbaa27383cfb |
# -*- coding: utf-8 -*-
"""
InaSAFE Disaster risk assessment tool developed by AusAid and World Bank
- **Shake Event Test Cases.**
Contact : ole.moller.nielsen@gmail.com
.. note:: This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as publishe... | easmetz/inasafe | realtime/test/test_shake_event.py | Python | gpl-3.0 | 28,049 | [
"VisIt"
] | 0886aa4f29310128d6884467fa5be5144c9003e8070e60064b61407566c47f25 |
#!/usr/bin/env python
# coding: utf-8
# ---
# syncID: e6ccf19a4b454ca594388eeaa88ebe12
# title: "Calculate Vegetation Biomass from LiDAR Data in Python"
# description: "Learn to calculate the biomass of standing vegetation using a canopy height model data product."
# dateCreated: 2017-06-21
# authors: Tristan Goulde... | NEONScience/NEON-Data-Skills | tutorials/Python/Lidar/lidar-biomass/calc-biomass_py/calc-biomass_py.py | Python | agpl-3.0 | 20,510 | [
"Gaussian"
] | c955f9e13d4578e45731d9e2b2557a48a9ddb4ef00c1bf621034bb57a87a19c9 |
# Copyright (C) 2008-2009 Open Society Institute
# Thomas Moroz: tmoroz@sorosny.org
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License Version 2 as published
# by the Free Software Foundation. You may not use, modify or distribu... | boothead/karl | karl/scripts/mvcontent.py | Python | gpl-2.0 | 5,598 | [
"VisIt"
] | a6ba758a84e44b0d9b6037e16851eb9d6b8429989ac80a53b663da03d6e26aff |
# Dataset created from this:
# Elements of Statistical Learning 2nd Ed.; Hastie, Tibshirani, Friedman; Feb 2011
# example 10.2 page 357
# Ten features, standard independent Gaussian. Target y is:
# y[i] = 1 if sum(X[i]) > .34 else -1
# 9.34 is the median of a chi-squared random variable with 10 degrees of freedom
# ... | 111t8e/h2o-2 | py/testdir_single_jvm/test_GLM2_hastie_shuffle.py | Python | apache-2.0 | 4,072 | [
"Gaussian"
] | a0ff55b8108c6c52745087ee9471a857e41bc390bf689c203c30a3346c39eb02 |
import csv
from typing import Dict
import io
import random
import sys
def _sanitize_id(x: str) -> str:
return ''.join(str(random.randint(0, 9)) for _ in range(len(x)))
first_names = [
'Tom', 'Mary', 'Patricia', 'Linda', 'John', 'Brian', 'Jim', 'Nick', 'Sally',
'Cindy', 'Kelly', 'Kim', 'Maria'
]
last_nam... | jbms/beancount-import | beancount_import/source/venmo_sanitize.py | Python | gpl-2.0 | 2,089 | [
"Brian"
] | 46f0dbfbcd87c524adebb60e4ab2e362cc7209c74384be475fc4054f28ec76e4 |
import pdb
import numpy as np
import math
import time
import chainer
import chainer.functions as F
import chainer.links as L
from chainer import cuda
from util import gaussian_logp
from util import gaussian_logp0
class VAE(chainer.Chain):
def __init__(self, dim_in, dim_hidden, dim_latent, num_layers, temperatur... | ashwindcruz/dgm | adgm_pose/model.py | Python | mit | 6,764 | [
"Gaussian"
] | 63f87a7ce9b4f3aa324c69b8bb534c28a383cbb4877ece19b6a002f85e81718a |
"""
LDA: Linear Discriminant Analysis
"""
# Authors: Matthieu Perrot
# Mathieu Blondel
import warnings
import numpy as np
from scipy import linalg, ndimage
from .base import BaseEstimator, ClassifierMixin, TransformerMixin
from .utils.extmath import logsum
class LDA(BaseEstimator, ClassifierMixin, Transfo... | ominux/scikit-learn | sklearn/lda.py | Python | bsd-3-clause | 8,887 | [
"Gaussian"
] | fd24022fbc67ee45497ce5f9d3f6c3956b145fda908c1b57c1b6dff0d789ffa8 |
#!/usr/bin/python
from numpy import ones, append, array, mean, std;
from math import sqrt, exp, pi;
from math import log10;
def checkScales(data, deg):
'If factors have varaying scales, module recommends to normalize data'
cols = data.shape[1];
mx, mn = [], [];
for i in range(cols): #find the exponent value for ea... | parejadan/accurp-engine | src/predictors.py | Python | mit | 5,889 | [
"Gaussian"
] | 654f3e0049336ba238df62232d21ad89b16e6d479a05cd6d809616d2604b8ae5 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 16.3.8
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the te... | bjolivot/ansible | lib/ansible/modules/network/avi/avi_applicationprofile.py | Python | gpl-3.0 | 6,354 | [
"VisIt"
] | 51784f8ce6966c417c840f7c96e16a5587676837457eac4f73e8aa5b1994271d |
"""
Acceptance tests for Studio related to the acid xblock.
"""
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAuthPage
from common.test.acceptance.pages.studio.overview import CourseOutlinePage
from common.test.acceptanc... | fintech-circle/edx-platform | common/test/acceptance/tests/studio/test_studio_acid_xblock.py | Python | agpl-3.0 | 7,011 | [
"VisIt"
] | f6dae4c25ccc2154ce38df7522c7b004d9dd39ebbff24797f3c4a586ae415f7d |
# Author(s): TJ Lane (tjlane@stanford.edu) and Christian Schwantes
# (schwancr@stanford.edu)
# Contributors: Vince Voelz, Kyle Beauchamp, Robert McGibbon
# Copyright (c) 2014, Stanford University
# All rights reserved.
"""
Functions for computing forward committors for an MSM. The forward
committor is defin... | Eigenstate/msmbuilder | msmbuilder/tpt/committor.py | Python | lgpl-2.1 | 9,898 | [
"MDTraj",
"VisIt"
] | 345067534d9109e61ffff1f87d126a1acae1eb321ce958aa2be0a5ac15c1f20b |
# Copyright (c) 2009-2021 The Regents of the University of Michigan
# This file is part of the HOOMD-blue project, released under the BSD 3-Clause
# License.
"""Anisotropic potentials."""
import json
from hoomd import md
from hoomd.md.pair.pair import Pair
from hoomd.logging import log
from hoomd.data.parameterdicts... | joaander/hoomd-blue | hoomd/md/pair/aniso.py | Python | bsd-3-clause | 9,444 | [
"HOOMD-blue"
] | cbb6c6b5bdab59a9c9977b0c4e971df08faf40c935f1bfd9acefb5e7e209f4bb |
import json
import boto3
from botocore.exceptions import ClientError
import pytest
import sure # pylint: disable=unused-import
from moto import mock_iam
invalid_policy_document_test_cases = [
{
"document": "This is not a json document",
"error_message": "Syntax errors in policy.",
},
{
... | spulec/moto | tests/test_iam/test_iam_policies.py | Python | apache-2.0 | 51,224 | [
"ADF"
] | 1454b7287f7c39fd737d087489c9c9a3cf48a487d72e48cb28c8f5974d8ea2bb |
import simtk.unit as u
from simtk.openmm import app
import simtk.openmm as mm
import numpy as np
from mdtraj.testing import eq
from unittest import skipIf
from openmoltools import utils
import os
import openmoltools.openeye
import pandas as pd
import mdtraj as md
from mdtraj.testing import raises
smiles_fails_with_str... | kyleabeauchamp/openmoltools | openmoltools/tests/test_openeye.py | Python | gpl-2.0 | 9,177 | [
"MDTraj",
"OpenMM"
] | 28b2887bf33572a2c7b4eff1ad854d1f3ca9b9f3208fb1e9a8ddc62c8bfc1059 |
# Orca
#
# Copyright 2006-2009 Sun Microsystems Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This... | ruibarreira/linuxtrail | usr/lib/python3/dist-packages/orca/scripts/apps/planner/braille_generator.py | Python | gpl-3.0 | 2,812 | [
"ORCA"
] | 11fea9a82cd46cba7b09684557578a9206794249109b3fa3d54678a0a34dacaf |
# Open EPW and STAT weather files together
#
# Ladybug: A Plugin for Environmental Analysis (GPL) started by Mostapha Sadeghipour Roudsari
#
# This file is part of Ladybug.
#
# Copyright (c) 2013-2015, Chris Mackey <Chris@MackeyArchitecture.com>
# Ladybug is free software; you can redistribute it and/or modify
# it... | samuto/ladybug | src/Ladybug_Open EPW And STAT Weather Files.py | Python | gpl-3.0 | 7,729 | [
"EPW"
] | 16990b42a5d4b81a61e4dfa6de10daa5e45d6dd5d4cf6f292209f64944552dc0 |
# -*- coding: utf-8 -*-
#
# ConnPlotter.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or... | espenhgn/nest-simulator | extras/ConnPlotter/ConnPlotter.py | Python | gpl-2.0 | 83,899 | [
"Gaussian",
"NEURON"
] | e82e8e1895217bda93253a3556db418e5716075c2f70979a8cabda88088623da |
# coding: utf-8
from __future__ import unicode_literals, division
# This module implements new error handlers for QChem runs.
import os
from pymatgen.io.qchem.inputs import QCInput
from pymatgen.io.qchem.outputs import QCOutput
from custodian.custodian import ErrorHandler
from custodian.utils import backup
__author... | specter119/custodian | custodian/qchem/handlers.py | Python | mit | 10,594 | [
"pymatgen"
] | c108ef12022b45102447eacf188a0dcb99dbee6f199219e8a564e1db087f63f5 |
#!/usr/bin/env python
#
# Copyright (c) 2014-2016 Apple Inc. All rights reserved.
# Copyright (C) 2015 Canon Inc. All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
# 1. Redistributions of source cod... | teamfx/openjfx-8u-dev-rt | modules/web/src/main/native/Source/JavaScriptCore/Scripts/builtins/builtins_templates.py | Python | gpl-2.0 | 9,799 | [
"VisIt"
] | 7efacfb9fe9b06691704093bb0fe60e61f75ee012618f85003992bfbc98e0319 |
"""Define a graph of nodes-links-patches.
Examples
--------
>>> from landlab.graph import Graph
>>> node_x, node_y = [0, 0, 0, 1, 1, 1, 2, 2, 2], [0, 1, 2, 0, 1, 2, 0, 1, 2]
>>> graph = Graph((node_y, node_x))
>>> graph.x_of_node
array([ 0., 1., 2., 0., 1., 2., 0., 1., 2.])
>>> graph.y_of_node
array([ 0., 0... | csherwood-usgs/landlab | landlab/graph/graph.py | Python | mit | 22,050 | [
"NetCDF"
] | c72f82b3683d02ce3f9b034c858d04249df4cd8a1b8274279424bd754186e5dd |
"""
Test of the classical LM model for language modelling
"""
from groundhog.datasets import LMIterator
from groundhog.trainer.SGD_momentum import SGD as SGD_m
from groundhog.trainer.SGD import SGD
from groundhog.mainLoop import MainLoop
from groundhog.layers import MultiLayer, \
RecurrentMultiLayer, \
Re... | wavelets/GroundHog | scripts/DT_RNN_Tut_Ex.py | Python | bsd-3-clause | 16,496 | [
"Gaussian"
] | b405704d2b3ffbed22bcc10f46ea817ec179eede50d635f7c83201ded5aec0f3 |
# -*- coding: utf-8 -*-
# Licensed under a 3-clause BSD style license - see LICENSE.rst
# Author: Pauli Virtanen, 2016
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import math
import operator
from .util import inf, nan, is_na
def compute_stats(sample... | qwhelan/asv | asv/statistics.py | Python | bsd-3-clause | 15,797 | [
"Gaussian"
] | 95a3dc9069b244fd12f56b344f40d3d95fab0cc44d83848630e57c1943babeef |
# Example: How to prepare a new payment with the Mollie API, and render the QRcode.
#
import os
import time
from app import database_write, get_public_url
from mollie.api.client import Client
from mollie.api.error import Error
PUBLIC_URL = get_public_url()
def main():
try:
#
# Initialize the Mo... | mollie/mollie-api-python | examples/01-new-payment-using-qrcode.py | Python | bsd-2-clause | 2,550 | [
"VisIt"
] | 12060e8b41630d5a487d12790095b24baa963114d4753f93c8c33407b9efc626 |
"""
Infinite mixture model : A generalization of Bayesian mixture models
with an unspecified number of classes
"""
import numpy as np
from bgmm import BGMM, detsh
from scipy.special import gammaln
def co_labelling(z, kmax=None, kmin=None):
"""
return a sparse co-labelling matrix given the label vector z
... | bthirion/nipy | nipy/algorithms/clustering/imm.py | Python | bsd-3-clause | 22,092 | [
"Gaussian"
] | ee4652332bb2c1e65cf5a02ee4d3695b47d5bc46d8cadc69938c4087ed7970b4 |
#
# create.py
#
# Python interface for the iRobot Create
#
# Zach Dodds dodds@cs.hmc.edu
# updated for SIGCSE 3/9/07
#create.py
#Written 2008-6-3 by Peter Mawhorter
#Based on pyCreate's create module... this is a minimal version of that code.
#create2.py
#Added code for wait for angle, wait for distanc... | squirly/turtlecore-web-controller | web_control/create.py | Python | mit | 42,747 | [
"Amber"
] | 3eed87ea72768cc5ee9be191e041519f008a5caad88e509995b97f77f56e0f97 |
"""Spectral index distributions."""
import numpy as np
def constant(value=-1.4, shape=1):
"""Good for adopting a single value."""
return np.full(shape, value).astype(np.float32)
def gauss(mean=-1.4, std=1, shape=1):
"""Generate spectral indices from a Gaussian distribution.
Args:
mean (floa... | davidgardenier/frbpoppy | frbpoppy/si_dists.py | Python | mit | 554 | [
"Gaussian"
] | d6d41729907469b8d1eafb66d9ccb25b7de8bdb04d332972012958cb38ed1abb |
#!/usr/bin/env python
""" move base utils
modified from movebasesquare
ren ye 2016-10-19
"""
import rospy
import actionlib
from actionlib_msgs.msg import *
from geometry_msgs.msg import Pose, Point, Quaternion, Twist, Vector3
from sensor_msgs.msg import NavSatFix
from nav_msgs.msg import Odometry
from move_ba... | ron1818/Singaboat_RobotX2016 | robotx_nav/nodes/move_base_util.py | Python | gpl-3.0 | 13,497 | [
"xTB"
] | 3fa575789f887092ea58fb89eeee4cb7138f0af17c372245b3919cb16c1bc532 |
"""
==================
Two-class AdaBoost
==================
This example fits an AdaBoosted decision stump on a non-linearly separable
classification dataset composed of two "Gaussian quantiles" clusters
(see :func:`sklearn.datasets.make_gaussian_quantiles`) and plots the decision
boundary and decision scores. The di... | depet/scikit-learn | examples/ensemble/plot_adaboost_twoclass.py | Python | bsd-3-clause | 3,090 | [
"Gaussian"
] | 682f7336e14f031499bcb4e788010a5d9ca0fe890c1f1f9d070df223f01496cf |
from distutils.core import setup
from distutils.core import setup, Extension
import numpy as np
import os
nonempty = lambda x: len(x) > 0
if os.getenv("C_INCLUDE_PATH") is not None:
sys_includes = filter(nonempty, os.getenv("C_INCLUDE_PATH").split(':'))
else:
sys_includes = []
if os.getenv("LIBRARY_PATH") is ... | davmre/treegp | setup.py | Python | gpl-3.0 | 2,119 | [
"Gaussian"
] | 585410b11aad949fea04ad756ced0f4aa4aad2d502b7080ac60d9ebb231e94ad |
from pybuilder.core import use_plugin, init, Author
use_plugin("python.install_dependencies")
use_plugin("python.core")
#use_plugin("python.unittest")
use_plugin("python.distutils")
use_plugin('copy_resources')
use_plugin('filter_resources')
authors = [Author('Marco Hoyer', 'marco_hoyer@gmx.de')]
description = """che... | marco-hoyer/check_http_yaml | build.py | Python | gpl-2.0 | 2,064 | [
"VisIt"
] | 6ffdcd8ebef98722859dec497a23af5a02592eafed3c6e0d84b7bfaf558df2fd |
import openpathsampling as paths
import openpathsampling.netcdfplus.chaindict as cd
from openpathsampling.integration_tools import md, error_if_no_mdtraj
from openpathsampling.engines.openmm.tools import trajectory_to_mdtraj
from openpathsampling.netcdfplus import WeakKeyCache, \
ObjectJSON, create_to_dict, ObjectS... | openpathsampling/openpathsampling | openpathsampling/collectivevariable.py | Python | mit | 24,689 | [
"MDTraj",
"OpenMM"
] | 81ec6123fecacd5641a5d0e236bb68bef9215df4de7ace23c13fce7fe22d3db7 |
import sys
import struct
import traceback
import envi
import envi.bits as e_bits
from envi.bits import binary
#import sys
#import struct
#import traceback
#import envi
#import envi.bits as e_bits
#from envi.bits import binary
from envi.archs.arm.const import *
from envi.archs.arm.regs import *
# FIXME: TODO
# FIX... | joshuahoman/vivisect | envi/archs/arm/disasm.py | Python | apache-2.0 | 74,993 | [
"xTB"
] | 94e1b8e95a10efccd296999ac8d8e8b6fe75485743e40ffc87ad92d5e3845ac1 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import os
import unittest
from pathlib import Path
from monty.serialization import dumpfn, loadfn
from pymatgen.core.periodic_table import Element
from pymatgen.entries.computed_entries import ComputedEntry
from pymatgen.en... | materialsproject/pymatgen | pymatgen/entries/tests/test_entry_tools.py | Python | mit | 2,920 | [
"pymatgen"
] | 387a5abd8f298138df41d2f34a8523567ee3995e239dd1a0a0dba0bc5f2ef51d |
# -*- coding: utf-8 -*-
"""
Implements Optimistic Q-Learning for policies in pynfg.iterSemiNFG objects
Created on Fri Mar 22 15:32:33 2013
Copyright (C) 2013 James Bono
GNU Affero General Public License
Author: Dongping Xie
"""
from __future__ import division
import numpy as np
import matplotlib.pylab as plt
from... | jwbono/PyNFG | pynfg/levelksolutions/qlearning.py | Python | agpl-3.0 | 8,130 | [
"VisIt"
] | 19d699e268b4833df35b21ce66776f325d25474e9ec40e3fd5d0b725e6be633e |
# -*- coding: utf-8 -*-
#
# This file is part of Lalf.
#
# Lalf is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Lalf is distributed... | Roromis/Lalf-Forumactif | lalf/users.py | Python | gpl-3.0 | 13,345 | [
"VisIt"
] | e57d5ac6bfb291229302b699920b74107686682ed5fa6049f641d3c9141b924c |
# -*- coding: utf-8 -*-
"""
End-to-end tests for Student's Profile Page.
"""
from contextlib import contextmanager
import unittest
from datetime import datetime
from bok_choy.web_app_test import WebAppTest
from nose.plugins.attrib import attr
from django.utils.timezone import UTC
from ...pages.common.logout import Lo... | nttks/edx-platform | common/test/acceptance/tests/lms/test_learner_profile.py | Python | agpl-3.0 | 34,062 | [
"VisIt"
] | cf3a9b4a044436b2a9f49897a6bce1988214a2436ae4b32888833d27fc0ad792 |
#!/usr/bin/env python3
"""
refguide_check.py [OPTIONS] [-- ARGS]
- Check for a NumPy submodule whether the objects in its __all__ dict
correspond to the objects included in the reference guide.
- Check docstring examples
- Check example blocks in RST files
Example of usage::
$ python refguide_check.py optimize... | grlee77/numpy | tools/refguide_check.py | Python | bsd-3-clause | 38,039 | [
"Gaussian"
] | b7160198742bd719f33862ab59077a9d9a185643b950644a248283bd3afc1483 |
#!/usr/bin/env/ python3
"""
Convert ASCII files to NetCDF4 (plain text)
"""
import sys
import argparse
import numpy as np
import netCDF4
args = []
if __name__ == '__main__':
parser = argparse.ArgumentParser(description='convert file from ASCII to netCDF format',
formatter_cla... | guilindner/VortexFitting | vortexfitting/convertToNC.py | Python | mit | 3,315 | [
"NetCDF"
] | 4127b5bb467f506a10efc1cee8d237a4ade4cc082e78ae3ababe9a4a7a8d305e |
# pylint: disable=R0201
# R0201: For testing methods which could be functions are fine.
#
# $Filename$
# $Authors$
# Last Changed: $Date$ $Committer$ $Revision-Id$
# Copyright (c) 2003-2011, German Aerospace Center (DLR)
# All rights reserved.
#Redistribution and use in source and binary forms, with or without... | DLR-SC/DataFinder | test/unittest/datafinder_test/core/item/visitor/base_test.py | Python | bsd-3-clause | 11,462 | [
"VisIt"
] | fc429b2e780cb4e03a56ad1f516f83ac1249fb477f49bc0361c184d89cb459d9 |
# Copyright 2008-2013 Nokia Siemens Networks Oyj
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... | yamateh/robotframework | src/robot/running/model.py | Python | apache-2.0 | 8,153 | [
"VisIt"
] | 67eb96e855859a4295da56709e881d78337c91f5150a8c63e0e990a393fe0900 |
import pandas as pd
from sklearn.ensemble import RandomForestClassifier
from sklearn.ensemble import GradientBoostingClassifier
from sklearn.ensemble import BaggingClassifier
from sklearn.ensemble import AdaBoostClassifier
from sklearn.ensemble import ExtraTreesClassifier
from sklearn.neural_network import MLPClassifie... | rupakc/Kaggle-Compendium | Imperium - Detecting Insults in Social Commentary/imperium-baseline.py | Python | mit | 2,791 | [
"Gaussian"
] | 8560ce1ec4a480b66755cc4cf3b8389de8a6ce3ecc59513e40cb9960ada7ac1a |
"""Module containing constants."""
TEI_SOURCE_CBETA_GITHUB = 'cbeta-github'
TEI_SOURCE_CHOICES = [TEI_SOURCE_CBETA_GITHUB]
TOKENIZER_CHOICE_CBETA = 'cbeta'
TOKENIZER_CHOICE_LATIN = 'latin'
TOKENIZER_CHOICE_PAGEL = 'pagel'
TOKENIZER_CHOICES = [TOKENIZER_CHOICE_CBETA, TOKENIZER_CHOICE_LATIN,
TOKENI... | ajenhl/tacl | tacl/constants.py | Python | gpl-3.0 | 39,789 | [
"Biopython"
] | 396d06d7f24dd495ec81b972d27d229c4ea629bdff173ac037ed338fcd06a88e |
"""
============================================================
Empirical evaluation of the impact of k-means initialization
============================================================
Evaluate the ability of k-means initializations strategies to make
the algorithm convergence robust as measured by the relative stan... | florian-f/sklearn | examples/cluster/plot_kmeans_stability_low_dim_dense.py | Python | bsd-3-clause | 4,310 | [
"Gaussian"
] | 9dd4f49a87fe90de95ac51fa0e9c3cde183063d869bb8348c9d57c44f3f87760 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# (c) 2012-2013 Michal Kalewski <mkalewski at cs.put.poznan.pl>
#
# This file is a part of the Simple Network Simulator (sim2net) project.
# USE, MODIFICATION, COPYING AND DISTRIBUTION OF THIS SOFTWARE IS SUBJECT TO
# THE TERMS AND CONDITIONS OF THE MIT LICENSE. YOU SHO... | mkalewski/sim2net | sim2net/application.py | Python | mit | 1,080 | [
"VisIt"
] | f74d67bd8ecf7ce426c241ac4fd6ceabec1ebf071a9b30a04ce7f1298ec14f1d |
#!/usr/bin/env python
#
# Copyright 2008,2009 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3, or (at your opt... | GREO/GNU-Radio | gr-utils/src/python/usrp_siggen.py | Python | gpl-3.0 | 14,262 | [
"Gaussian"
] | 8d2ec17d0dd80dcf26605ba371bf93ba193a19b7dacfb0e68b87331f02aefb36 |
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
"""
Testing code.
Updated BSM March 2016
"""
import unittest
import os
import numpy as np
from itertools import product
from pykrige import kriging_tools as kt
from pyk... | basaks/PyKrige | pykrige/test.py | Python | bsd-3-clause | 91,554 | [
"Gaussian"
] | e2f92c283a90e45d1ebc80efbb618353c1f1ed7637b845ea2ced788726def630 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | kkreis/espressopp | src/Real3D.py | Python | gpl-3.0 | 3,765 | [
"ESPResSo"
] | c24b98c9b671c142934c441ad6f291261fbb140b190a3c01e1acf2121cbe6407 |
from django.core.exceptions import ValidationError
from django.apps import apps
# from edc_base.audit_trail import AuditTrail
from edc_base.model.models import BaseUuidModel
from edc_consent.models import RequiresConsentMixin
from edc_constants.constants import (
YES, POS, NEG, FAILED_ELIGIBILITY)
from edc_export.... | TshepangRas/tshilo-dikotla | td_maternal/models/maternal_visit.py | Python | gpl-2.0 | 4,885 | [
"VisIt"
] | adc70a6060b61a68311c35941691fe68648046ba910647f58da5f831e798e9a9 |
#
# Copyright (C) 2014-2022 S[&]T, The Netherlands.
#
from __future__ import absolute_import, division, print_function
from muninn._compat import string_types as basestring
import copy
import datetime
import re
import uuid
import muninn.geometry as geometry
from muninn.enum import Enum
from muninn.exceptions impor... | stcorp/muninn | muninn/language.py | Python | bsd-3-clause | 28,166 | [
"VisIt"
] | 3983548b0a2b0032ee920af45f933077198e22396e083bf26de8a526ee1c5d4f |
#!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
##... | SKIRT/PTS | modeling/component/component.py | Python | agpl-3.0 | 19,107 | [
"Galaxy"
] | e7c88510c6e10815db700ad3ba9b5d1d5f6431ad5d20c792a850c6cf542b6aab |
#!/usr/bin/python
#Audio Tools, a module and set of tools for manipulating audio data
#Copyright (C) 2007-2012 Brian Langenberger
#This program is free software; you can redistribute it and/or modify
#it under the terms of the GNU General Public License as published by
#the Free Software Foundation; either version 2... | R-a-dio/python-audio-tools | audiotools/py_encoders/wavpack.py | Python | gpl-2.0 | 53,576 | [
"Brian"
] | 623bd9261313a1fff65ac789c7a76e96814b387dc230517240af9f38bccad2d0 |
#!/usr/bin/env python
########################################################################
# $Header: $
########################################################################
"""
Remove the given file or a list of files from the File Catalog
Example:
$ dirac-dms-remove-catalog-files /formation/user/v/vhamar... | DIRACGrid/DIRAC | src/DIRAC/DataManagementSystem/scripts/dirac_dms_remove_catalog_files.py | Python | gpl-3.0 | 2,256 | [
"DIRAC"
] | 2284b905873232c4d59b59d22d352651c825f13f6d3889c41343306bc2e8402d |
# -*- coding: utf-8 -*-
#!/usr/bin/env python
#
# Copyright 2015 Diamond Light Source <stuart.fisher@diamond.ac.uk>
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http:... | DiamondLightSource/SynchWeb | api/formulatrix/uploader/formulatrix_uploader.py | Python | apache-2.0 | 19,426 | [
"VisIt"
] | 301756e18af03cdc969acdacc05e98bb00911d755f86d43ea587b90814440eb8 |
'''
This python script is intent to be ran in Paraview to process the
z-stacks generated by the ImageJ macro StackGen.ijm.
Please, note that the combination of Decimate and Smooth filter
will produce a surface with reduced number of cells but that has
more resolution in important parts of the mesh... | vianamp/MitoMembranes | xmlgenerator/SurfaceGen.py | Python | apache-2.0 | 2,586 | [
"ParaView",
"VTK"
] | b9a7cc41af8c025bc0da0ca6ab464cae8abc3c36e59764b3c3a282fb6c73721b |
"""Equal Groups K-Means clustering utlizing the scikit-learn api and related
utilities.
BSD 3-clause "New" or "Revised" License
version 0.17.1
"""
import warnings
import numpy as np
import scipy.sparse as sp
from sklearn.base import BaseEstimator, ClusterMixin, TransformerMixin
from sklearn.cluster import k_means... | ndanielsen/Same-Size-K-Means | clustering/equal_groups.py | Python | bsd-3-clause | 31,478 | [
"Gaussian"
] | fc5d0508ffb08fd142121e8842ae34a53308afd1a4bf5b407868866fef592485 |
__author__ = 'fabian'
from collections import deque
import time
import requests
# Constants
BRAZIL = 'br'
EUROPE_NORDIC_EAST = 'eune'
EUROPE_WEST = 'euw'
KOREA = 'kr'
LATIN_AMERICA_NORTH = 'lan'
LATIN_AMERICA_SOUTH = 'las'
NORTH_AMERICA = 'na'
OCEANIA = 'oce'
RUSSIA = 'ru'
TURKEY = 'tr'
JAPAN = 'jp'
regions = ['br',... | fab0l1n/lolXtension | RIOTWatcher.py | Python | gpl-3.0 | 23,937 | [
"CRYSTAL"
] | 0c85e1ddcff4ea8158e43e2c22bb020a59debbdb5e7a85f51c05c6b76e0f1ef2 |
# proxy module
from __future__ import absolute_import
from mayavi.filters.delaunay3d import *
| enthought/etsproxy | enthought/mayavi/filters/delaunay3d.py | Python | bsd-3-clause | 94 | [
"Mayavi"
] | 53db3c665cf001c037f79ca09cc1cdd7141fc727a0779d0575977011aa5f9d76 |
# Copyright 2014 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
import os
import unittest
import six
from telemetry import decorators
from telemetry.core import util
from core import find_dependencies
class FindDepen... | nwjs/chromium.src | tools/perf/core/find_dependencies_unittest.py | Python | bsd-3-clause | 3,040 | [
"MOOSE"
] | d0bba683e388fcea632060eb03ce0d0e87943176818737e66b26002bc79dab3d |
import argparse
import re
import Bio
import Bio.Phylo
from datetime import datetime
import gzip
import os, json, sys
import pandas as pd
import subprocess
import shlex
from contextlib import contextmanager
from treetime.utils import numeric_date
from collections import defaultdict
from pkg_resources import resource_str... | nextstrain/augur | augur/utils.py | Python | agpl-3.0 | 26,113 | [
"Biopython"
] | f56e3292b0362e7ea573bc856b1784d7fbe7f68a5572a54d40d49c6ae1cfb025 |
"""
provide a generic structure to support window functions,
similar to how we have a Groupby object
"""
from __future__ import division
import warnings
import numpy as np
from collections import defaultdict
import pandas as pd
from pandas.lib import isscalar
from pandas.core.base import PandasObject, SelectionMix... | pjryan126/solid-start-careers | store/api/zillow/venv/lib/python2.7/site-packages/pandas/core/window.py | Python | gpl-2.0 | 49,027 | [
"Gaussian"
] | 6037a2956accbb776f6e0a69cdc0ce313eb6a5107ffd4023a57805368f17c30a |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import unittest
import os
from pymatgen.analysis.molecule_matcher import MoleculeMatcher
from pymatgen.analysis.molecule_matcher import IsomorphismMolAtomMapper
from pymatgen.analysis.molecule_matcher import ... | fraricci/pymatgen | pymatgen/analysis/tests/test_molecule_matcher.py | Python | mit | 6,171 | [
"pymatgen"
] | 9f474c95eddbc5ecb917dc894e7fd27f9d9bc2726f51d44fd2cdf576d6943cbc |
# -*- coding: utf-8 -*-
""" *==LICENSE==*
CyanWorlds.com Engine - MMOG client, server and tools
Copyright (C) 2011 Cyan Worlds, Inc.
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3... | zrax/moul-scripts | Python/Teledahn.py | Python | gpl-3.0 | 3,389 | [
"VisIt"
] | d1b93f20d059380f0972d4ca75963953f2f5b6e70a0ba47a268a9fbb0b945062 |
import numpy
from gauss import *
from matmul import *
# tests of gaussian elimination
A = numpy.array([ [1, 1, 1], [-1, 2, 0], [2, 0, 1] ], dtype=numpy.float64)
b = numpy.array([6, 3, 5], dtype=numpy.float64)
# gaussElim changes A in place -- send a copy
x, d = gaussElim(A.copy(), b.copy(), returnDet=1)
# test it ... | bt3gl/Numerical-Methods-for-Physics | others/lin_algebra/gauss-test.py | Python | apache-2.0 | 1,577 | [
"Gaussian"
] | b98134a8c0a009cc81b359512d4c3d7bb0a933444724c230b75dc3b13cd9dace |
#!/usr/bin/env python3
import os
import sys
import random
import time
from random import seed, randint
import argparse
import platform
from datetime import datetime
import imp
import numpy as np
import fileinput
# from run_parameter import *
parser = argparse.ArgumentParser(
description="This is a python3 script to... | luwei0917/awsemmd_script | variable_test_run.py | Python | mit | 13,027 | [
"Brian",
"LAMMPS"
] | a0739a16c9e9a837a1fd865dba4162070e0159d5f426fb4b35a19b2301044e48 |
"""
This pipeline is intended to extract edge information from T2W images.
"""
import os
import numpy as np
from protoclass.data_management import T2WModality
from protoclass.data_management import GTModality
from protoclass.preprocessing import RicianNormalization
from protoclass.preprocessing import GaussianNorma... | I2Cvb/mp-mri-prostate | pipeline/feature-extraction/t2w/pipeline_extraction_edge_t2w.py | Python | mit | 4,554 | [
"Gaussian"
] | cf85099ae532451fc288352e6a2bfbe4a968c636d651827e6b7a88b5b9605007 |
from __future__ import absolute_import
from typing import Any, Dict, List, Set, Tuple, TypeVar, Text, \
Union, Optional, Sequence, AbstractSet, Pattern, AnyStr
from typing.re import Match
from zerver.lib.str_utils import NonBinaryStr
from django.db import models
from django.db.models.query import QuerySet
from dja... | dawran6/zulip | zerver/models.py | Python | apache-2.0 | 62,996 | [
"VisIt"
] | 30c9657ab075a5214f0a72a6baaa21136222de21635e3c0e4462cdf2d27dd3ab |
import numpy as np
import math
import pdb
import matplotlib.pyplot as plt
###########################################################################
#
# This module holds the definitions for various basis functions that
# are routinely used in variational Bayesian regression applications.
# The functions must be def... | tomevans/linvb | linvb/vbr_basis_functions.py | Python | gpl-2.0 | 6,559 | [
"Gaussian"
] | 211c43293eda53066ab593bd7d4082817e5b1c7d39c388a06ed4576dac869473 |
# POVME Pocket ID 1.0 is released under the GNU General Public License
# (see http://www.gnu.org/licenses/gpl.html).
# If you have any questions, comments, or suggestions, please don't hesitate to contact me,
# Jacob Durrant, at jdurrant [at] ucsd [dot] edu.
import sys
import numpy
from scipy import spatial
from sci... | j-wags/POVME | POVME_version_for_paper_do_not_modify/POVME_pocket_id.py | Python | gpl-3.0 | 51,500 | [
"VMD"
] | 070e34a7451b4b5addee1228a5e6ea50a516ed2b5acf05add1ad7800f72197a7 |
# -*- coding: utf-8 -*-
"""INI simulator with temporal pattern code.
@author: rbodo
"""
import tensorflow as tf
import numpy as np
from snntoolbox.simulation.target_simulators.\
INI_temporal_mean_rate_target_sim import SNN as SNN_
from snntoolbox.simulation.utils import get_layer_synaptic_operations, \
remov... | NeuromorphicProcessorProject/snn_toolbox | snntoolbox/simulation/target_simulators/INI_temporal_pattern_target_sim.py | Python | mit | 5,979 | [
"NEURON"
] | 6594c8fca7ab539f8a9b7c0e367b9013895fb0c6923e4be09c7fd8aa91c78f0f |
# Copyright (C) 2016, Davit Samvelyan
#
# This file is part of YouCompleteMe.
#
# YouCompleteMe is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ... | snakeleon/YouCompleteMe-x64 | python/ycm/buffer.py | Python | gpl-3.0 | 4,644 | [
"VisIt"
] | ff40f76c4ae7c3f9ecf6fd5a0dbf648fbf2defc4cc38547676b117ab0eeb1ec9 |
"""
Useful support routines (for internal use).
These functions aren't really Zero Install specific; they're things we might
wish were in the standard library.
@since: 0.27
"""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from zeroinstall import _
import os, ... | pombredanne/zero-install | zeroinstall/support/__init__.py | Python | lgpl-2.1 | 2,369 | [
"VisIt"
] | e9f5d805d24eb6ce5ae548c66f299fb4f1f843993126f9d34183f3cd175921bb |
# -*- coding: utf-8 -*-
# Author: Vincent Dubourg <vincent.dubourg@gmail.com>
# (mostly translation, see implementation details)
# Licence: BSD 3 clause
"""
The :mod:`sklearn.gaussian_process` module implements scalar Gaussian Process
based predictions.
"""
from .gaussian_process import GaussianProcess
from ... | valexandersaulys/airbnb_kaggle_contest | venv/lib/python3.4/site-packages/sklearn/gaussian_process/__init__.py | Python | gpl-2.0 | 454 | [
"Gaussian"
] | 4a18d4b4a34b02d1e2c36b8c99f6866f21010ebfe275d3e2c8df120aaacf33b5 |
# remotefilelogserver.py - server logic for a remotefilelog server
#
# Copyright 2013 Facebook, Inc.
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2 or any later version.
from mercurial import wireproto, changegroup, match, util, changelog, context
fro... | pycontribs/remotefilelog | remotefilelog/remotefilelogserver.py | Python | gpl-2.0 | 11,639 | [
"VisIt"
] | 8c91f645f3c530154bf3c7503e5f200a6596779734085cea8b5e0640c3b0bc16 |
'''
Created on 2012-09-29
A simple script that reads WRF netcdf-4 file and displays a 2D field in a proper geographic projection;
application here is plotting precipitation in the inner WRF domain.
@author: Andre R. Erler
'''
## includes
# matplotlib config: size etc.
import numpy as np
import matplotlib.pylab as py... | aerler/WRF-Projects | src/archive/plotPrecip.py | Python | gpl-3.0 | 6,161 | [
"NetCDF"
] | 96865cea41c55c55d2e8bc6e380f73ddbbbbac2eea5b1b4952f5f7fa50e4281b |
#!/usr/bin/python
from __future__ import print_function
import py2neo, sys, json, anydbm, os, optparse, base64
from timeit import default_timer as timer
import snomed_g_lib_neo4j
# -----------------------------------------------------------------------------
# Module: snomed_g_TC_tools.py
# Purpose: Compute Transiti... | rorydavidson/SNOMED-CT-Database | NEO4J/snomed_g_TC_tools.py | Python | mit | 20,561 | [
"VisIt"
] | 377bf1aa803f777d5cd91b0530f1a86a03dff6dd311eb092f81d7ef6495b0e6d |
# author: brian dillmann
# for rscs
# this might be a useless class - dont give af
class Transition:
def __init__(self, destinationStateName, condition, evaluator):
self.destination = destinationStateName
self.condition = condition
self.evaluator = evaluator
def evaluate(self):
return self.evaluator.evaluat... | dillmann/rscs | lib/Graph/Transition.py | Python | mit | 338 | [
"Brian"
] | cc9c0c3c67a0fd5947e52120b0ba624f2beeaebbd6c1b8d1b0df27a3415c11f3 |
from ..instrumenters import InstrumentPlugin
from ...metrics import formatting
import time
import logging
log = logging.getLogger( __name__ )
GALAXY_SLOTS_KEY = "galaxy_slots"
START_EPOCH_KEY = "start_epoch"
END_EPOCH_KEY = "end_epoch"
RUNTIME_SECONDS_KEY = "runtime_seconds"
class CorePluginFormatter( formatting.Jo... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/jobs/metrics/instrumenters/core.py | Python | gpl-3.0 | 3,185 | [
"Galaxy"
] | 39040963f42ed682c0561fa826658e8a5b5a889317fa9cd3f4e21f3ee3294807 |
#!/usr/bin/env python
##
## See COPYING file distributed along with the ncanda-data-integration package
## for the copyright and license terms
##
"""
xnat_scans_filter.py
======================
This script filters the csv file generated using xnat_extractor.py. This filters
is based on records from XNAT where there i... | nicholsn/ncanda-data-integration | scripts/reporting/xnat_scans_filter.py | Python | bsd-3-clause | 5,552 | [
"VisIt"
] | 314ef162b5f6d2432aac2c19d168b632f55943d5da9bcd18b7a131db1fa1f7fd |
#!/usr/bin/env python
import argparse
import copy
import logging
import re
import sys
from cpt_gffParser import gffParse, gffWrite, gffSeqFeature
logging.basicConfig(level=logging.INFO)
log = logging.getLogger(name="blastxml2gff3")
__doc__ = """
BlastXML files, when transformed to GFF3, do not normally show gaps in t... | TAMU-CPT/galaxy-tools | tools/jbrowse/blastxml_to_gapped_gff3.py | Python | gpl-3.0 | 10,031 | [
"BLAST"
] | 2f9ca991786f67c97c957efafee5cc410ec0e1d91420836031099080dd6ffd55 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# StereoscoPy for GIMP
#
# Copyright (C) 2018 Seán Hewitt <contact@2sh.me>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of t... | SeanHewitt/stereosco.py | gimp_plugin/stereoscopy-gimp.py | Python | gpl-3.0 | 6,114 | [
"Amber"
] | a027e111dfd6febbd7f26be3cc46f420977d8d79f790ffc4a145fa0db36d74fb |
###
### This script can be run with pvpython rather than pvbatch, as it does not
### need mpi.
###
### Purpose:
###
### See the purpose description in the script "hacc_magnitude_halos.py", as
### this script does the exact same thing, but for the points density image data
### files.
###
### Input Files:
###
### ... | Kitware/cinema | scripts/data_generation/cosmology/hacc_volume_halos.py | Python | bsd-3-clause | 9,226 | [
"ParaView"
] | 9d0e6432010af448d6619840ea4189409f241a183caf657408a053c873aa4236 |
# Copyright (c) 2017-2019 The University of Manchester
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This progra... | project-rig/spalloc_server | spalloc_server/allocator.py | Python | gpl-2.0 | 45,698 | [
"VisIt"
] | 04bc8f20d320a2dcd9f2434088b517d2176264a105a31882bb2748d601736108 |
# Copyright 2003-2008 by Leighton Pritchard. All rights reserved.
# Revisions copyright 2008-2009 by Peter Cock.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
# Contact: Leighton Pritchard,... | zjuchenyuan/BioWeb | Lib/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py | Python | mit | 19,362 | [
"Biopython"
] | 2306a92a6055011b38848ce621b5a5f8f1b66807261670f5950b09eb92b33436 |
import os
from ez_setup import use_setuptools
use_setuptools()
from setuptools import setup, find_packages
with open("README.rst") as f:
long_desc = f.read()
ind = long_desc.find("\n")
long_desc = long_desc[ind + 1:]
setup(
name="custodian",
packages=find_packages(),
version="0.8.1",
inst... | alberthxf/custodian | setup.py | Python | mit | 1,560 | [
"NWChem",
"VASP",
"pymatgen"
] | 67769fd8decb4185f9cc8e137d1965cfa8413d5c744dc49f1a178f45332c1245 |
"""
This module contains updated code for dealing with query objects in Goat. Idea is
to provide a common set of attributes that all queries possess and then add more
attributes and methods in subclasses to allow different subtypes to be coded in a
representative manner.
"""
from persistent import Persistent
from bin... | chris-klinger/Goat | queries/query_objects.py | Python | gpl-3.0 | 4,653 | [
"BLAST"
] | 7ee8de1ae5ad4cd3a596f6855cb349b109f05654a6b961aaa67f65663752f636 |
from __future__ import print_function, division, unicode_literals
import os
import operator
from pymatgen.phasediagram.analyzer import PDAnalyzer
from pymatgen.phasediagram.maker import PhaseDiagram
from pymatgen.core.structure import Structure
from pymatgen.io.vasp.outputs import Vasprun
from pymatgen.entries.compu... | ashtonmv/twod_materials | twod_materials/stability/analysis.py | Python | gpl-3.0 | 6,441 | [
"VASP",
"pymatgen"
] | 0a36cf52460f80529a2bf2b885ff46e00d8809d77bc91ac023625013ed55c8b3 |
#-*- coding:utf-8 -*-
from __future__ import division
from keras.layers import Convolution2D ,MaxPooling2D,Flatten
from keras.layers.core import Dense, Dropout, Activation
from keras.models import Sequential
from keras.optimizers import SGD
from keras.utils import np_utils
from sklearn.cross_validation import train_tes... | Jesse-Back/mach_image_proc | modeling.py | Python | gpl-3.0 | 6,724 | [
"NEURON"
] | f47159ca8f0c0beb2f5dbacf410fabcbbbeeefc649ef8c568deabaa9317ab129 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the G... | espressopp/espressopp | src/integrator/VelocityVerlet.py | Python | gpl-3.0 | 1,804 | [
"ESPResSo"
] | ad86a626a5d6ef923637d38d2c9b821178b1d07c0dd38a9531e09ac63a292df1 |
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | GoogleCloudPlatform/functions-framework-python | tests/test_functions/cloud_events/main.py | Python | apache-2.0 | 1,382 | [
"Galaxy"
] | 171057fbdef766ad0c8ca4c6ba54bcb3baeb5c49f2438bbbdd05267f12292e95 |
from handlers import handlers, handler
from handlers.base import BaseHandler
import dns.resolver
from conf import config, debug_logger
import logging
import hashlib
import nss.nss as nss
from tls import nssconfig
from nss.error import NSPRError
intended_usage = nss.certificateUsageSSLServer
logger = logging.getLogg... | alvarofe/cassle | handlers/dane.py | Python | gpl-3.0 | 6,178 | [
"VisIt"
] | c40e975efe6ea4d10ff6edea8deaf4eb8c372e6ce0e3c1f5ccf4d4e2d0e0b18d |
from edc_appointment.models import Appointment
from edc_constants.constants import YES, NOT_REQUIRED, UNKEYED
from edc_registration.models import RegisteredSubject
from edc_rule_groups.classes import RuleGroup, site_rule_groups, Logic, CrfRule, RequisitionRule
from tshilo_dikotla.constants import NO_MODIFICATIONS, STA... | botswana-harvard/tshilo-dikotla | td_infant/rule_groups.py | Python | gpl-2.0 | 10,566 | [
"VisIt"
] | 420a27f192a6775b446e0bcda0a41668a1e4d28dd32984cbb010c41c362fc01b |
# This file is part of the Fluggo Media Library for high-quality
# video and audio processing.
#
# Copyright 2010 Brian J. Crowell <brian@fluggo.com>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Founda... | fluggo/Canvas | fluggo/ezlist.py | Python | gpl-3.0 | 4,860 | [
"Brian"
] | e709e4025ee82fb2ef83c00420f0678ecf6405f7820c797ea9ae3e363ac2a504 |
# -*- coding: utf-8 -*-
# Generated by Django 1.9.4 on 2016-03-18 14:20
from __future__ import unicode_literals
from django.db import migrations, models
class Migration(migrations.Migration):
initial = True
dependencies = [
]
operations = [
migrations.CreateModel(
name='Galaxy'... | craigderington/SagittariusA | milkyway/galaxies/migrations/0001_initial.py | Python | gpl-3.0 | 1,376 | [
"Galaxy"
] | 6fa6196dcc13bc885f7b870a3f94f00aa1348bc8d5cc3cdad56daa4c821aa47d |
# Copyright 2013-2017, Brian May
#
# This file is part of python-alogger.
#
# python-alogger is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ver... | Karaage-Cluster/python-alogger | alogger/parsers/__init__.py | Python | gpl-3.0 | 2,411 | [
"Brian"
] | 07e39f675820be3ba2074eae6bc1a062ab3bd82503d3b2be19f8a2ad3f1dd7ae |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | EmreAtes/spack | var/spack/repos/builtin/packages/ncl/package.py | Python | lgpl-2.1 | 10,803 | [
"NetCDF"
] | 8f2e50d69b31a67f7a29cc9299ce2b9f1773e6fd68597e9f88734bd63cec8e56 |
"""
Current source classes for the brian module.
Classes:
DCSource -- a single pulse of current of constant amplitude.
StepCurrentSource -- a step-wise time-varying current.
ACSource -- a sine modulated current.
NoisyCurrentSource -- a Gaussian whitish noise current.
:copyright: C... | anupkdas-nus/global_synapses | pyNN-dispackgaes/brian/standardmodels/electrodes.py | Python | gpl-3.0 | 7,143 | [
"Brian",
"Gaussian",
"NEURON"
] | 45c9e07b194857600c686a72fa85b5b19f1089ed8a14a84ace14e286a27cbd3b |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/interaction/LJcos.py | Python | gpl-3.0 | 7,660 | [
"ESPResSo"
] | c3f41f9f0532a6399c4a758810f34496298584db9aac44d9551fffc3e4521181 |
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