text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
value | license stringclasses 15
values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
# coding: utf-8
"""
Acceptance tests for Studio's Setting pages
"""
from __future__ import unicode_literals
import os
import random
import string
import json
from textwrap import dedent
from bok_choy.promise import EmptyPromise
from mock import patch
from common.test.acceptance.tests.studio.base_studio_test import S... | jolyonb/edx-platform | common/test/acceptance/tests/studio/test_studio_settings.py | Python | agpl-3.0 | 48,807 | [
"VisIt"
] | 5e5ea32e17f2bc11a209b00dcce60d5d0eaad9619ccca8e8f7cd9d9f73251c03 |
# pt.po
val = {" days." : " dias.",
"(all)" : "(todos)",
"(any)" : "(qualquer)",
"(anyone)" : "(qualquer pessoa)",
"(available)" : "(disponíveis)",
"(blank)" : "(em branco)",
"(both)" : "(ambos)",
"(depleted)" : "(esgotados)",
"(everyone)" : "(todas as pessoas)",
"(master user, not editable)" : "(utilizador principal,... | bobintetley/asm3 | src/asm3/locales/locale_pt.py | Python | gpl-3.0 | 229,844 | [
"Amber",
"VisIt"
] | 08da536b7c3bd7f6d4a296d08571b55928c6df5bc26039609a7497735788b229 |
#!/usr/bin/env python
"""
# =============================================================================
Copyright Government of Canada 2015-2017
Written by: Eric Marinier, Public Health Agency of Canada,
National Microbiology Laboratory
Funded by the National Micriobiology Laboratory and the Genome Canada / A... | phac-nml/neptune | neptune/ConsolidateSignatures.py | Python | apache-2.0 | 11,504 | [
"BLAST"
] | 65f1e3f19bd10a1ca0d2c5857172f842316a1ef3c0c7e23bc7e9759bc2388028 |
from __future__ import print_function
from __future__ import division
try:
from builtins import str
except:
print("Warning: No str in builtins")
try:
from builtins import range
except:
print("Warning: No range in builtins")
# Requires:
# - boututils
# - NumPy
try:
from boututils.datafile import... | kevinpetersavage/BOUT-dev | tools/pylib/boutdata/collect.py | Python | gpl-3.0 | 12,834 | [
"NetCDF"
] | c424ee8703f3a3a7b7e180290d20d03af08262ceb10c489364f23b0afb641f37 |
"""
This sample simulates equal number of positively and negatively charged particles using the P3M solver. The system is maintained at a constant temperature by using a Langevin thermostat.
"""
#
# Copyright (C) 2013-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can r... | hmenke/espresso | samples/minimal-charged-particles.py | Python | gpl-3.0 | 3,528 | [
"ESPResSo"
] | 3c772e11b059bb2a3142fbe5a2d436ffd19c8b2e0cff6051c56c263d710a738c |
# This file is part of beets.
# Copyright 2016, Adrian Sampson.
#
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitation the rights to use, copy, ... | beetbox/beets | beetsplug/discogs.py | Python | mit | 25,902 | [
"VisIt"
] | 502fb6fade8b7638af1d3e6141509d6556490fff55b7e9edda32d66df9c30873 |
#!/usr/bin/env python
""" create rst files for documentation of DIRAC """
import os
import shutil
import socket
import sys
import logging
import glob
from diracdoctools.Utilities import writeLinesToFile, mkdir, makeLogger
from diracdoctools.Config import Configuration, CLParser as clparser
LOG = makeLogger('CodeRef... | fstagni/DIRAC | docs/diracdoctools/cmd/codeReference.py | Python | gpl-3.0 | 13,798 | [
"DIRAC"
] | 465e12f980a4528e430f5de4d6b61aacccea2922abf9b1c9232c90c309fed1e7 |
import sys
import os.path
#sys.path.insert(0, '/home/andy/theano/tool_examples/theano-lstm-0.0.15')
from theano_lstm import Embedding, LSTM, RNN, StackedCells, Layer, create_optimization_updates, masked_loss
from utilities import *
import dill
import argparse
#import cPickle
import pickle
import numpy
from collections... | darongliu/Lstm_Turing_LM | lstm-neural-turing-machines-lm/analysis/v1-one-weight-same/lm_v4.py | Python | mit | 25,147 | [
"NEURON"
] | 8cc7ce15b6264b048d005d70364b8d053652abbadccb5dea6704b0065ca223b0 |
from apts.catalogs import Catalogs
def test_messier_catalog():
c = Catalogs.MESSIER
# Messier catalog contains 110 objects
assert len(c) == 110
# M13 is Hercules Globular Cluster - NGC 6205 (index starts from 0)
assert c.iloc[12]["NGC"] == "NGC 6205"
# M45 is Pleiades (index starts from 0)
assert c.iloc... | pozar87/apts | tests/catalogs_test.py | Python | apache-2.0 | 566 | [
"Galaxy"
] | d1b9eebbf8c35eaa70ad24e9fa6323c11f77c81dffeb586fa359da620b228574 |
import copy
import time,pdb
import ephem
import pandas as pd
import numpy as np
from astropy.io import ascii
from itertools import product
from .pdf import * # part of isoclassify package (to do make explicit import)
from .priors import * # part of isoclassify package (to do make explicit import)
from .plot import *... | danxhuber/isoclassify | isoclassify/grid/classify.py | Python | mit | 42,118 | [
"Gaussian"
] | 82db6faa505856bb8623bfd211d001b249af4c0b668c0b486346c99e12f72674 |
#!/usr/local/epd/bin/python
#------------------------------------------------------------------------------------------------------
# Dirac propagator based on:
# Fillion-Gourdeau, Francois, Lorin, Emmanuel, Bandrauk, Andre D.
# Numerical Solution of the Time-Dependent Dirac Equation in Coordinate Space without Ferm... | cabrer7/PyWignerCUDA | GPU_DiracDaviau2D.py | Python | mit | 45,985 | [
"DIRAC",
"Gaussian",
"Psi4"
] | ad6852dfd879727904846e03c415e80ff9081b5d0a152963b5066d72b8a7d93d |
"""
Container page in Studio
"""
from bok_choy.page_object import PageObject
from bok_choy.promise import Promise, EmptyPromise
from common.test.acceptance.pages.studio import BASE_URL
from common.test.acceptance.pages.studio.utils import HelpMixin
from common.test.acceptance.pages.common.utils import click_css, conf... | romain-li/edx-platform | common/test/acceptance/pages/studio/container.py | Python | agpl-3.0 | 23,626 | [
"VisIt"
] | e2822eb0b94415a6b503fc2cb465377bea59f00d9c45494960581bc069aafc66 |
# -*- coding: utf-8 -*-
"""Tests for interchange with JGIF."""
import json
import logging
import sys
import unittest
from pybel import from_cbn_jgif, to_jgif
from pybel.constants import (
ACTIVITY,
ANNOTATIONS,
CITATION,
CITATION_TYPE_OTHER,
CITATION_TYPE_PUBMED,
DECREASES,
DIRECTLY_INCRE... | pybel/pybel | tests/test_io/test_jgif.py | Python | mit | 5,119 | [
"NEURON",
"Pybel"
] | 730818c2e5310c92a750582ffc4e15542120722e6f419a389d747535cdde9e5d |
###############################################################################
# Copyright 2017-2021 - Climate Research Division
# Environment and Climate Change Canada
#
# This file is part of the "fstd2nc" package.
#
# "fstd2nc" is free software: you can redistribute it and/or modify
# it under... | neishm/fstd2nc | fstd2nc/mixins/compat.py | Python | lgpl-3.0 | 19,391 | [
"NetCDF"
] | 5b51267ac30da29c9b857ce4a36ec12f57d4a508a482e36505e9199ed5de159f |
#!/usr/bin/env pythonw
import tkinter as Tk
from tkinter import ttk
import matplotlib
import numpy as np
import numpy.ma as ma
import new_cmaps
import matplotlib.colors as mcolors
import matplotlib.gridspec as gridspec
import matplotlib.patheffects as PathEffects
class EnergyPanel:
# A dictionary of all of the par... | pcrumley/Iseult | src/energy_plots.py | Python | gpl-3.0 | 32,212 | [
"Gaussian"
] | 91e3dc5eefe8742c5d0fd2837da784fcd322e4472d706247b97212065515d610 |
from distutils.core import setup, Extension
from glob import glob
module1 = Extension('hashpumpy',
sources = glob('*.cpp'),
libraries = ['crypto'])
setup (name = 'hashpumpy',
version = '1.2',
author = 'Zach Riggle (Python binding), Brian Wallace (HashPump), Y... | christophetd/HashPump | setup.py | Python | mit | 524 | [
"Brian"
] | 99eb4c245b6c7b796d4d5e235e5d788a3de8a37994ad1d2847e0bc676aa6aeaf |
""" This simply invokes DIRAC APIs for creating 2 jobDescription.xml files,
one with an application that will end with status 0, and a second with status != 0
"""
from DIRAC.Core.Base.Script import parseCommandLine
parseCommandLine()
from DIRAC.tests.Utilities.utils import find_all
from DIRAC.Interfaces.API.Job i... | Andrew-McNab-UK/DIRAC | tests/Integration/WorkloadManagementSystem/createJobXMLDescriptions.py | Python | gpl-3.0 | 1,201 | [
"DIRAC"
] | ff294a0e2ca21fb06c8ffe817ae5433f25954f2a3cef0f40c64685e120679f6c |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2008, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | anksp21/Community-Zenpacks | ZenPacks.AndreaConsadori.Funkwerk/setup.py | Python | gpl-2.0 | 3,300 | [
"VisIt"
] | 91f7f5a2645792e1688e1f317cc48a489d66217f60265eaf23674a884d9d5e31 |
"""
Bok choy acceptance and a11y tests for problem types in the LMS
See also lettuce tests in lms/djangoapps/courseware/features/problems.feature
"""
import random
import textwrap
from nose import SkipTest
from abc import ABCMeta, abstractmethod
from nose.plugins.attrib import attr
from selenium.webdriver import Acti... | jjmiranda/edx-platform | common/test/acceptance/tests/lms/test_problem_types.py | Python | agpl-3.0 | 27,271 | [
"VisIt"
] | 847f33e36bbebe93b78aad156e36e995f2fc9ccebe9f6d5bb14e18bce6a4b199 |
from contextlib import contextmanager
from taichi._lib import core as _ti_core
from taichi.lang import impl
from taichi.profiler.kernel_metrics import default_cupti_metrics
class StatisticalResult:
"""Statistical result of records.
Profiling records with the same kernel name will be counted in a ``Statistic... | yuanming-hu/taichi | python/taichi/profiler/kernel_profiler.py | Python | mit | 22,549 | [
"VisIt"
] | be5e0782a63b43b42ab69e2aa8bd3329a2cd0ac50a6ba220428bd37107f936ef |
#!/usr/bin/env python
'''
GAEUnit: Google App Engine Unit Test Framework
Usage:
1. Put gaeunit.py into your application directory. Modify 'app.yaml' by
adding the following mapping below the 'handlers:' section:
- url: /test.*
script: gaeunit.py
2. Write your own test cases by extending unittest.TestCas... | toomoresuch/pysonengine | parts/gaeunit/gaeunit.py | Python | mit | 23,642 | [
"VisIt"
] | 0fc87ff942c4bb4a0adc452ab1b0541c8cd2e0a0ed5fdacceb93153464c7e736 |
"""
Support for managing apps (as created with "0install add").
@since: 1.9
"""
# Copyright (C) 2012, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from zeroinstall import _, SafeException, logger
from zeroinstall.support import basedir, portable_rename
from zeroinstall.injector impo... | michel-slm/0install | zeroinstall/apps.py | Python | lgpl-2.1 | 13,853 | [
"VisIt"
] | 28d2093566e5ddf94065a250c7c659d36019b1d190e3e0d58e63868f93444f60 |
"""
Statistics.
"""
from functools import partial
import math
import numpy as np
import matplotlib.pyplot as plt
import scipy.special as spsp
import scipy.stats as spst
import scipy.optimize as spop
"""
Plot style settings.
"""
_figwidth = 10
plt.rc('figure', figsize=[_figwidth,_figwidth/1.618], facecolor='1.0... | jbernhard/ebe-analysis | lib/stats.py | Python | mit | 9,576 | [
"Gaussian"
] | 65c951679b94fdd7d0ced9f5d57d1eb9aa7b27791f163250ec26727f588e7b9e |
from Bio import SeqIO
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq
from Bio import motifs
import gzip
import numpy as np
import random
#import multiprocessing
import itertools
import os
import sys
"""
A class for holding static methods that can serve as useful
Bioinformatics tools. There are methods here f... | LarsDu/DeepNuc | deepnuc/dubiotools.py | Python | gpl-3.0 | 21,845 | [
"Biopython"
] | d7da1324bfd1860a53e03fedabfb280c2056bf8a7296294852c9f414a5d055ee |
#import matplotlib.pyplot as plt
import numpy as np
from collections import deque
import numbers
"""
Created on Jun 29, 2016
@author: hans-werner
"""
def convert_to_array(x, dim=None, return_is_singleton=False):
"""
Convert point or list of points to a numpy array.
Inputs:
x: (list of)... | hvanwyk/quadmesh | src/mesh.py | Python | mit | 263,904 | [
"VisIt"
] | f994c6d04d02a07b541299532eb10bcd5f453419e2723ef56d342f152c0e8668 |
# -*- coding: utf-8 -*-
#########################################################################
## This program is part of 'MOOSE', the
## Messaging Object Oriented Simulation Environment.
## Copyright (C) 2018 Upinder S. Bhalla. and NCBS
## It is made available under the terms of the
## GNU General Public ... | dilawar/moose-core | tests/core/test_Xreacs6.py | Python | gpl-3.0 | 3,592 | [
"MOOSE"
] | d7e6c11e1616f7218cab7b032f086f28664591afa8af71ade1d3687c6a94883f |
'''This script will automate running blastx and blastn for putative
viral sequences.'''
import argparse
import os
from datetime import datetime
from subprocess import Popen
from shlex import split
from multiprocessing import cpu_count
from blastResults import sigHits, subsetSig
from version import version
def ublast... | icwells/Kiwi | bin/blastSeqs.py | Python | gpl-3.0 | 5,672 | [
"BLAST"
] | 1afdb302440a458dd9ecb9631bfeb0af7627a2afa77d7b9bfca24bc16c5a7475 |
"""Handle user related queries."""
import base64
import collections
import logging
import re
import zlib
from google.appengine.api import app_identity
from google.appengine.api import mail
from google.appengine.api import namespace_manager
from google.appengine.api import oauth
from google.appengine.api import users
f... | tomwilkie/awesomation | src/appengine/user.py | Python | mit | 9,492 | [
"VisIt"
] | 6602790979d2fd71b848e8ba19dfe0a5e998636b00c3eeb9968cb46898cdfe44 |
# -*- coding: utf-8 -*-
"""
Data conversion utilities for dataframe
=====================================
Convert cytoscape.js style graphs from/to dataframe object.
"""
import pandas as pd
from . import cytoscapejs as cyjs
def from_dataframe(df, source_col='source', target_col='target', interaction_col='interact... | idekerlab/cyrest-examples | py2cytoscape_doc/py2cytoscape/util/dataframe.py | Python | mit | 3,100 | [
"Cytoscape"
] | 3437a86434f22e994987024a6eed1c5849517c806bb13a521f3fc814b2da83bc |
# encoding:utf-8
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2009 Benny Malengier
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# ... | pmghalvorsen/gramps_branch | gramps/plugins/lib/libplugins.gpr.py | Python | gpl-2.0 | 8,402 | [
"Brian"
] | c96cd5db64350545fb05ef59239b6538067cdf0a440f589d83b82ff3dd2410bc |
# Draw a cone and write it out to sys.argv[1] in a few different ways. All
# output files should be bit-for-bit reproducible, i.e., no embedded
# timestamps, hostnames, floating point error, etc.
from __future__ import print_function
import os
import platform
import sys
import mpi4py.MPI
import paraview.simple as pv... | hpc/charliecloud | examples/paraview/cone.py | Python | apache-2.0 | 1,329 | [
"ParaView",
"VTK"
] | f5e0e13bef8eb95bc4d66891049f58a84e469fca84f37c7c10ccec22c4e9b37e |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkImageSpatialAlgorithm(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
... | nagyistoce/devide | modules/vtk_basic/vtkImageSpatialAlgorithm.py | Python | bsd-3-clause | 505 | [
"VTK"
] | 8c88793e28a2932bfe546d282b5fc5e7d15c614875ee6707294616a2309514c0 |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2007, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | anksp21/Community-Zenpacks | ZenPacks.AndreaConsadori.Motorola/ZenPacks/AndreaConsadori/Motorola/modeler/plugins/CanopyDeviceMap.py | Python | gpl-2.0 | 1,326 | [
"VisIt"
] | 45a50bb54a059b37c3dc91a43994ef85d24f3e2479f026c95f777356b73d601a |
"""
Test the Studio help links.
"""
from unittest import skip
from nose.plugins.attrib import attr
from common.test.acceptance.fixtures.course import XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAuthPage
from common.test.acceptance.pages.studio.asset_index import AssetIndexPage
fro... | fintech-circle/edx-platform | common/test/acceptance/tests/studio/test_studio_help.py | Python | agpl-3.0 | 43,324 | [
"VisIt"
] | ba6ae35172fba1d1d702e2413fb74697e10a5288e4afa7784ba00cff3310a319 |
import sys
import numpy
from python.src.data_processing.normalizer import Normalizer
from python.src.neural_networks.neural_network import NeuralNetwork
from python.src.neurons.receive_all_neuron import ReceiveAllNeuron
from python.src.neurons.output_only_neuron import OutputOnlyNeuron
from python.src.neurons.activati... | DomenicD/dom_ml_playground | python/src/neural_networks/feed_forward.py | Python | mit | 3,406 | [
"NEURON"
] | 4ba0131741da363b410507c6de92ea0417aa2ae6dcd89868bf2cd2f15a056eb5 |
from __future__ import unicode_literals
import os
import bson
import logging
import pymongo
import datetime
import requests
import functools
from modularodm import fields, Q
from modularodm.exceptions import NoResultsFound
from dateutil.parser import parse as parse_date
from framework.guid.model import Guid
from fra... | samchrisinger/osf.io | website/files/models/base.py | Python | apache-2.0 | 31,875 | [
"VisIt"
] | 9fb0c6c981f103d314a44a0a7260dd11c34ebebae3ff378e47b64c59b9df496f |
"""
Write output files specific for xray data.
-- CXIdb files
"""
import tables
import numpy as np
from mdtraj import io
def write_cxidb(filename, shotset, sample_name='thorshotset'):
"""
Write a shotset to disk in CXIdb format.
Parameters
----------
filename : str
The name of the... | tjlane/thor | src/python/write.py | Python | gpl-2.0 | 2,737 | [
"MDTraj"
] | ded483320de074c835e2dc63f0daad6b21150049d2870a1304d2ebdbb872abaf |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkQuadricClustering(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
... | nagyistoce/devide | modules/vtk_basic/vtkQuadricClustering.py | Python | bsd-3-clause | 495 | [
"VTK"
] | 798e7f70de9de5b24a1d6b2b3d432277495febd9518014d3a1c832d40f27436f |
# coding: utf8
""" Core functions for
- Uniform spanning trees
* :func:`ust_sampler_wilson`
* :func:`ust_sampler_aldous_broder`:
- Descent procresses :class:`Descent`:
* :func:`uniform_permutation`
- :class:`PoissonizedPlancherel` measure
* :func:`uniform_permutation`
* :func:`RSK`: Robinson-S... | guilgautier/DPPy | dppy/exotic_dpps_core.py | Python | mit | 8,692 | [
"VisIt"
] | 4de09c1b6a27e6b009ece94ac0e6bc0fe98f279c32ea513873714fa6e0b784ed |
#!/usr/bin/env python
import sys
import numpy as np
import nibabel as nib
from scipy.signal import convolve
from scipy.ndimage.morphology import grey_closing
from scipy.ndimage.morphology import generate_binary_structure
from mne import write_surface
from mcubes import marching_cubes
def mkoutersurf(image, radius, out... | aestrivex/ielu | ielu/mkoutersurf.py | Python | gpl-3.0 | 1,540 | [
"Gaussian"
] | b1ff8734365a4bd674d5a6f3d798d5ba7c58e95cc8fb2ce63eb3249557fb38e4 |
#! usr/bin/env python
import optparse, os, csv, glob, sys
import MySQLdb
import PEATSA.Core as Core
import PEATSA.Core.Matrix
import matplotlib.pyplot as plt
import numpy as np
class ProteinComplexTool:
def __init__(self):
return
def DeltaStability(self,inputFile, mutationList, configurationFile, wo... | dmnfarrell/peat | sandbox/ProteinComplexTool.py | Python | mit | 13,150 | [
"MDAnalysis"
] | 0b1e7edc8e65fdeb7addb0c3bcb79029a2e52fbe0adc63b57485f06aa07793d7 |
"""Algorithms for spectral clustering"""
# Author: Gael Varoquaux gael.varoquaux@normalesup.org
# License: BSD
import warnings
import numpy as np
from ..base import BaseEstimator
from ..utils import check_random_state
from ..utils.graph import graph_laplacian
from .k_means_ import k_means
def spectral_embedding(a... | ominux/scikit-learn | sklearn/cluster/spectral.py | Python | bsd-3-clause | 11,249 | [
"Gaussian"
] | 0c3ded1a17737f262356e0cd46a5b937df0946f3cfa78ac0089a70cf5cced0d0 |
""" Base class for MyProxy and VOMS
"""
import os
import tempfile
import DIRAC
from DIRAC import gConfig, S_OK, S_ERROR
from DIRAC.Core.Utilities import DErrno
from DIRAC.Core.Security.X509Chain import X509Chain # pylint: disable=import-error
from DIRAC.Core.Security import Locations
class BaseSecurity(object):
... | DIRACGrid/DIRAC | src/DIRAC/Core/Security/BaseSecurity.py | Python | gpl-3.0 | 3,081 | [
"DIRAC"
] | 38c0f3bd1b4be97cb5d896e9a4c0c8d58cd5cb97bb889642ae3c4297011453dc |
# Copyright (c) 2012, James Hensman
# Licensed under the BSD 3-clause license (see LICENSE.txt)
__doc__ = """
Inference over Gaussian process latent functions
In all our GP models, the consistency propery means that we have a Gaussian
prior over a finite set of points f. This prior is
math:: N(f | 0, K)
where K i... | TianpeiLuke/GPy | GPy/inference/latent_function_inference/__init__.py | Python | bsd-3-clause | 3,383 | [
"Gaussian"
] | 083308155c65da2099613f6875b80d52c9f0b11310a0c6ded8646a8c9989409d |
# -*- coding: utf-8 -*-
import re
from numbers import Integral
from collections import namedtuple
__all__ = ["countries"]
try:
basestring
except NameError:
basestring = str
Country = namedtuple('Country',
'name alpha2 alpha3 numeric apolitical_name')
_records = [
Country(u"Afghanis... | repotvsupertuga/tvsupertuga.repository | script.module.streamlink.base/resources/lib/streamlink/utils/iso3166/__init__.py | Python | gpl-2.0 | 18,795 | [
"BWA"
] | 2562343df29eaf5934602681a227db87060ac81b8582e9e6c8f502261a1aee55 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import print_function
from __future__ import unicode_literals
if __name__ == '__main__':
import argparse
from Bio import AlignIO
from Bio.Align import MultipleSeqAlignment
from Bio.SeqRecord import SeqRecord
from krpy import krio
... | karolisr/krpy | krpy/tools/remove-keep-given-seqs-in-alignment.py | Python | gpl-3.0 | 2,490 | [
"Biopython"
] | 03de2967d9b951435e96de61c5d05fe6f44632c668dcca4dcd01df7f259fc250 |
import os
from ase import Atoms
from ase.io import read, write
from ase.calculators.exciting import Exciting
from ase.units import Bohr, Hartree
a = Atoms('N3O',
[(0, 0, 0), (1, 0, 0), (0, 0, 1), (0.5, 0.5, 0.5)],
pbc=True)
write('geo.exi', a)
b = read('geo.exi')
print a
print a.get_positions()
... | grhawk/ASE | tools/ase/test/exciting/exciting.py | Python | gpl-2.0 | 564 | [
"ASE",
"exciting"
] | 79d9a4be31b20604ffce758e3af4c3a598f376632041b6f9857d16658337c0c0 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 16.3.8
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the te... | 0x46616c6b/ansible | lib/ansible/modules/network/avi/avi_sslprofile.py | Python | gpl-3.0 | 7,426 | [
"VisIt"
] | 89e9dd372040398ddda83e93a8b52b954c09f32a53f7062c0d4d4c312d1bb9bd |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS.
"""
from datetime import datetime, timedelta
from flaky import flaky
from textwrap import dedent
from unittest import skip
from nose.plugins.attrib import attr
import pytz
import urllib
from bok_choy.promise import EmptyPromise
from ..helpers import (
Uniqu... | devs1991/test_edx_docmode | common/test/acceptance/tests/lms/test_lms.py | Python | agpl-3.0 | 51,932 | [
"VisIt"
] | a525f20472e6f55fa92fcbf4bc6856a755aa75f2d90bb405fcf4f91b30b43374 |
#!/usr/bin/python3
dicewords = {"11111":"a",
"11112":"a&p",
"11113":"a's",
"11114":"aa",
"11115":"aaa",
"11116":"aaaa",
"11121":"aaron",
"11122":"ab",
"11123":"aba",
"11124":"ababa",
"11125":"aback",
"11126":"abase",
"11131":"abash",
"11132":"abate",
"11133":"abbas",
"11134":"abbe",
"11135":"abbey",
"11136":"abbot",
"... | AdrianCohea/DicewareGen | diceware.py | Python | gpl-2.0 | 128,334 | [
"Amber",
"BLAST",
"Brian",
"DIRAC",
"Elk",
"GULP",
"Galaxy",
"MOE",
"MOOSE",
"NEURON",
"VisIt"
] | ff635a36bdc6c4d445f6beae2571808edbeefb9c886798604518b7bd44ea3431 |
"""Interface to Sailthru API."""
import hashlib
import itertools
import socket
import urllib
import urllib2
try:
# Prefer simplejson as it's usually faster
import simplejson as json
except ImportError:
import json
try:
import settings
except ImportError:
class settings:
class services:
... | oysterhotels/sailthru | sailthru.py | Python | mit | 11,270 | [
"BLAST"
] | 79ef941c85f4c04bc9e85a44abf5663bae29c0a1deb1089de823b5c5d0a770b9 |
# coding=utf-8
"""
Color Scheme information
"""
__author__ = 'Matt Eland'
class ColorScheme(object):
"""
A color scheme
:type background: tuple RGB values indicating the background
:type foreground: tuple RGB values for most text and buttons
:type highlight: tuple RGB values for highlighted text
... | IntegerMan/Pi-MFD | PiMFD/UI/ColorScheme.py | Python | gpl-2.0 | 8,532 | [
"Amber"
] | 3c8fc462af03601e5bc9ccb09b3210236decd80eedce687e49f3797e29254f86 |
# -*- coding: utf-8 -*-
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | googleapis/python-texttospeech | scripts/fixup_keywords.py | Python | apache-2.0 | 6,017 | [
"VisIt"
] | 179fce54595e6ab268b492cf7bd9c84ddbe41ac8a3fc54ebaed540fef668d577 |
#
# Copyright (c) 2017 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yasharmaster/scancode-toolkit | src/commoncode/hash.py | Python | apache-2.0 | 4,976 | [
"VisIt"
] | b1aa3cba0f9c7c1ceed2c0a962159cbc8c90bb798bd00beac7b576fc5d0eaa6a |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | EmreAtes/spack | var/spack/repos/builtin/packages/r-rvcheck/package.py | Python | lgpl-2.1 | 1,655 | [
"Bioconductor"
] | ce499ef7f51de8f4fa626734409f30416c4edd9730ad18522982253ce1d54113 |
# -*- Mode:Python; indent-tabs-mode:nil; tab-width:4 -*-
#
# Copyright (C) 2016 Canonical Ltd
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License version 3 as
# published by the Free Software Foundation.
#
# This program is distributed in the h... | ubuntu-core/snapcraft | snapcraft/storeapi/constants.py | Python | gpl-3.0 | 2,476 | [
"VisIt"
] | c820e6514f32eb91fd660fdfbd43faaa4bfaa04eb831ddb1ae3ce7f7fc92d23b |
# Copyright 2018 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | mlperf/training_results_v0.7 | Google/benchmarks/minigo/implementations/minigo-research-TF-tpu-v4-128/strategies.py | Python | apache-2.0 | 10,398 | [
"VisIt"
] | 97dc7224eaff22a9c61983de1744089f09fab46adbf4ab77c2c0694d5dea2f50 |
#import printStatWithName
from AZutilities import dataUtilities
from AZutilities import paramOptUtilities
from trainingMethods import AZorngRF
from trainingMethods import AZorngCvSVM
import Orange
import orange
import math
import copy
import string
"""
Module for calculation of non conformity scores and the correspond... | JonnaStalring/AZOrange | azorange/AZutilities/LOOCPMondrian.py | Python | lgpl-3.0 | 27,986 | [
"RDKit"
] | e26d668c685d9fcee3009acac51e566f429f5c9d40540a1b359aa70fa51933a7 |
"""Contains the parent class for the DMD MPFDisplay module as well as some
module-level functions related to using DMD files."""
# dmd.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and more info at htt... | spierepf/mpf | mpf/media_controller/display_modules/dmd.py | Python | mit | 12,533 | [
"Brian"
] | 36a59b6156da63d5154671a695856fd430ebc2278b8e27fe485268044a7ba2dd |
#!/usr/bin/env pvbatch
from paraview.simple import *
import pviz
import sys
oviz = pviz.viz(sys.argv) # instantiate viz object (and load data)
part = pviz.makeContour(varName='T_s',isoValueArray=[0.01],ColorArrayName='u_s')
ResetCamera() # auto-adapt camera to part extent
oviz.writeImage('isoT_0p01') ... | ruizanthony/pviz | examples/simple/isosurface.py | Python | lgpl-3.0 | 333 | [
"ParaView"
] | 6056c7c22820c2e7c9670d952898ef353911cdd43c0de6149e655dbd20c16bbd |
"""This module contains implementation of bolfire."""
__all__ = ['BOLFIRE']
import logging
import numpy as np
import elfi.methods.mcmc as mcmc
from elfi.classifiers.classifier import Classifier, LogisticRegression
from elfi.loader import get_sub_seed
from elfi.methods.bo.acquisition import LCBSC, AcquisitionBase
fr... | elfi-dev/elfi | elfi/methods/inference/bolfire.py | Python | bsd-3-clause | 18,033 | [
"Gaussian"
] | 741f4deffcfdb0f68ce644fb1519eb1cf97448b9d6b5a7ae4012e79bb4a7beeb |
from __future__ import unicode_literals
from django.test import TestCase
from django.utils import six
from .models import (Building, Child, Device, Port, Item, Country, Connection,
ClientStatus, State, Client, SpecialClient, TUser, Person, Student,
Organizer, Class, Enrollment, Hen, Chick, Base, A, B, C)
cl... | ericholscher/django | tests/select_related_regress/tests.py | Python | bsd-3-clause | 9,055 | [
"Brian"
] | e21f8ce8f792348cc847e7acfcd0cf38c33fb1cb5e9997d6bac61cc8b297cee3 |
# $Id$
#
# Copyright (C) 2000-2008 greg Landrum and Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
""" command line util... | adalke/rdkit | rdkit/ML/BuildComposite.py | Python | bsd-3-clause | 36,064 | [
"RDKit"
] | 8fa5f18c4d6ed88b6bc2d5f5b007eeef7108ce2f1ca37739239437014faa57a3 |
#
# Copyright (c) 2017 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yashdsaraf/scancode-toolkit | src/formattedcode/format_spdx.py | Python | apache-2.0 | 8,459 | [
"VisIt"
] | 0cc4c94776e345bd075593eb81b6b08c5b0f6fbf7b9d8f6d04d625839dc6d855 |
from __future__ import annotations
class ParameterReporter:
"""
Keeps a record of all the ModelParameterisations and
ScanVaryingModelParameterisations present and provides access to their
Parameters and ScanVaryingParameterSets for reporting purposes.
It is assumed that the provided model paramet... | dials/dials | algorithms/refinement/parameterisation/parameter_report.py | Python | bsd-3-clause | 6,541 | [
"CRYSTAL"
] | d4823aa3c9627b99a4512e34544d7c1262450b4e4dec0ae7605311f168867d8a |
# GeneaCrystal Copyright (C) 2012-2013
# Christian Jaeckel, <christian.doe@gmail.com>
# Frederic Kerber, <fkerber@gmail.com>
# Pascal Lessel, <maverickthe6@gmail.com>
# Michael Mauderer, <mail@michaelmauderer.de>
#
# GeneaCrystal is free software: you can redistribute it and/or modify
# it under the ... | MichaelMauderer/GeneaCrystal | geneacrystal/gameElements/playerBases.py | Python | gpl-3.0 | 16,824 | [
"CRYSTAL"
] | 4e1cc7a3868f6a0ca0fc6f90e6833d8f6570d594bbeab756f7e3be1f0f78a567 |
# -*- coding: utf-8 -*-
import logging
from collections import OrderedDict
import vtk, qt, ctk, slicer
from slicer.ScriptedLoadableModule import *
from CIP.logic.SlicerUtil import SlicerUtil
from CIP.logic import Util
from CIP.ui import CaseReportsWidget
#
# CIP_PAARatio
#
class CIP_PAARatio(ScriptedLoadableModule):... | acil-bwh/SlicerCIP | Scripted/CIP_PAARatio/CIP_PAARatio.py | Python | bsd-3-clause | 48,544 | [
"VTK"
] | 7b8839119e661fd36cf8386eeafb7b2abd9942707bb65a56fc732cd987cdd5bf |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | KaiSzuttor/espresso | testsuite/python/scafacos_dipoles_1d_2d.py | Python | gpl-3.0 | 5,495 | [
"ESPResSo"
] | eed3ed3699ca758473d3d938d2c8ca989c3d4897a34c5f97bd885e3c3fef80e5 |
"""Generate Java code from an ASDL description."""
# TO DO
# handle fields that have a type but no name
import os, sys, traceback
import asdl
TABSIZE = 4
MAX_COL = 100
def reflow_lines(s, depth):
"""Reflow the line s indented depth tabs.
Return a sequence of lines where no line extends beyond MAX_COL
... | fabioz/Pydev | plugins/org.python.pydev.parser/src/org/python/pydev/parser/jython/ast/asdl_java.py | Python | epl-1.0 | 20,265 | [
"VisIt"
] | d4dcf3974f6c89304178839cfb74ed2e5558d322436bb6cde676f9bfc64533a2 |
#!/usr/bin/python
#
# Script para criar estrutura do banco de dados
#
# Por: Alisson Menezes
#
#
from pymongo import *
print "[+] Conectando com o banco de dados"
client = MongoClient('localhost',27017)
db = client["octopus"]
print "[+] Conectado ..."
print "[+] Criando estrutura do banco"
db.nodes.update({ "_id":"de... | AlissonMMenezes/Octopus | inicia_db.py | Python | gpl-2.0 | 436 | [
"Octopus"
] | 2ede7ec334148029dd24c91b9212d1f0335dadd5697de5424a21f957d46ba0d5 |
r"""
I/O Registry (:mod:`skbio.io.registry`)
=======================================
.. currentmodule:: skbio.io.registry
Classes
-------
.. autosummary::
:toctree: generated/
IORegistry
Format
Functions
---------
.. autosummary::
:toctree: generated/
create_format
Exceptions
----------
.. autos... | demis001/scikit-bio | skbio/io/registry.py | Python | bsd-3-clause | 42,113 | [
"scikit-bio"
] | c71b3b46791e89c911e3684caeb7b5d99a28de07b6328d240dc1de7d7e0bba9a |
# -*- coding: utf-8 -*-
##############################################################################
#
# OpenERP, Open Source Management Solution
# Copyright (C) 2004-today OpenERP SA (<http://www.openerp.com>)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms o... | inspyration/odoo | addons/project/project.py | Python | agpl-3.0 | 74,481 | [
"VisIt"
] | f50a15db97f99d75bd5c821509f2f824d349ccf9fa247346bcd9d4229035eff7 |
#!/usr/bin/env python3
# coding: utf-8
""" E-VRP is a project about the routing of a fleet of electrical vehicles.
E-VRP is a project developed for the Application of Operational Research
exam at University of Modena and Reggio Emilia.
Copyright (C) 2017 Serena Ziviani, Federico Motta
This file is ... | sere/E-VRP | heuristic.py | Python | gpl-3.0 | 16,595 | [
"VisIt"
] | 3aac2c79b09c75e3c0b49a4f48ca27ba06b49c255dc9f4e8ec5b09aa8a83d063 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | Laurawly/tvm-1 | gallery/how_to/extend_tvm/use_pass_infra.py | Python | apache-2.0 | 11,740 | [
"VisIt"
] | c7d67b3b9012b0517c74a8b45eabe7dc30157724dc3e4efa6f9d0278efc39f29 |
from random import random,randint
import math
def wineprice(rating,age):
peak_age=rating-50
# Calculate price based on rating
price=rating/2
if age>peak_age:
# Past its peak, goes bad in 10 years
price=price*(5-(age-peak_age)/2)
else:
# Increases to 5x original value as it
# approaches its... | jefflyn/buddha | src/pci/chapter8/numpredict.py | Python | artistic-2.0 | 4,802 | [
"Gaussian"
] | bf6b16c2973ead155c9ed0a453cd7106a44d20774ba0b2229838d8ed118c2ed6 |
# -*- coding: utf-8 -*-
WHITE = 1 # node not visit
GRAY = 2 # visited but has other nodes
BLACK = 3 # visited and so have other
class Graph(object):
def __init__(self):
self._edges = {}
self._nodes = {} # ensure nodes are unique
def insert_edge(self, index1, index2):
if index1 n... | kern3020/incubator | unrooted/graph.py | Python | mit | 2,830 | [
"VisIt"
] | dc9e49c3ec16c21097beb341b59c28862571886759374da9008ce4e27811b4ad |
# -*- coding: utf-8 -*-
# Unit tests for cache framework
# Uses whatever cache backend is set in the test settings file.
from __future__ import unicode_literals
import copy
import os
import re
import shutil
import tempfile
import threading
import time
import unittest
import warnings
from django.conf import settings
... | MounirMesselmeni/django | tests/cache/tests.py | Python | bsd-3-clause | 85,442 | [
"Brian"
] | 535f34ea543a58cab5ab5c4e52ee34a73e3e0db493288b33156666eae7d5acd0 |
"""
Maximum likelihood covariance estimator.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Gael Varoquaux <gael.varoquaux@normalesup.org>
# Virgile Fritsch <virgile.fritsch@inria.fr>
#
# License: BSD 3 clause
# avoid division truncation
from __future__ import division
import warnin... | eickenberg/scikit-learn | sklearn/covariance/empirical_covariance_.py | Python | bsd-3-clause | 9,099 | [
"Gaussian"
] | 48b0d060325f41746021ca6af3bbba058b74dc500b65631107e21e97f4eab858 |
""" CSAPI exposes update functionalities to the Configuration.
Most of these functions can only be done by administrators
"""
from DIRAC import gLogger, gConfig, S_OK, S_ERROR
from DIRAC.Core.DISET.RPCClient import RPCClient
from DIRAC.Core.Utilities import List, Time
from DIRAC.Core.Security.X509Chain import X50... | fstagni/DIRAC | ConfigurationSystem/Client/CSAPI.py | Python | gpl-3.0 | 27,525 | [
"DIRAC"
] | c8902cd5b2de3595e2830d2103447649ca2af2839bb54c2bf7ffe31a724e628b |
# -*- coding: utf-8 -*-
"""Test sequences for graphiness.
"""
# Copyright (C) 2004-2018 by
# Aric Hagberg <hagberg@lanl.gov>
# Dan Schult <dschult@colgate.edu>
# Pieter Swart <swart@lanl.gov>
# All rights reserved.
# BSD license.
import heapq
import networkx as nx
__author__ = "\n".join(['Aric Hagberg... | kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/networkx/algorithms/graphical.py | Python | gpl-3.0 | 13,009 | [
"Brian"
] | 844e37e5aa1c60a1ceefffc155407f45b2b482c63885aa386752208b8906c38a |
# test driver for the second half of the SavePythonState test. it
# sets up the testing environment, loads the state file (passed
# on the command line), and verifys the resulting image
import sys
from paraview import smtesting
print sys.argv
smtesting.ProcessCommandLineArguments()
execfile(sys.argv[1])
_view = Get... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/ParaViewCore/ServerManager/Default/Testing/Python/SavePythonState.py | Python | gpl-3.0 | 502 | [
"ParaView",
"VTK"
] | e89b6a4762c9dfc57de90a97da92888bbc5598ed4eb07671d579bf8e6959fe23 |
""" Test_RSS_Policy_DTPolicy
"""
from mock import MagicMock
import unittest
from DIRAC import gLogger
import DIRAC.ResourceStatusSystem.Policy.DowntimePolicy as moduleTested
################################################################################
class DTPolicy_TestCase(unittest.TestCase):
def setUp(se... | DIRACGrid/DIRAC | src/DIRAC/ResourceStatusSystem/Policy/test/Test_RSS_Policy_DTPolicy.py | Python | gpl-3.0 | 3,478 | [
"DIRAC"
] | 0dfbf7d49cdfe87b8d3060fd983e2505700035d932a4c6273fc86da3cf664e40 |
import uuid
from django.db import models
from django.utils.translation import ugettext_lazy as _
from core.models.mixins import AuditableMixin
class Visit(AuditableMixin):
id = models.UUIDField(
default=uuid.uuid4, primary_key=True, editable=False,
verbose_name=_("id")
)
link = models.Fo... | ikcam/django-skeleton | core/models/visit.py | Python | bsd-3-clause | 960 | [
"VisIt"
] | 696fd245493630a92823f79bf4d8e85dab4c5efdb5ab5461df16c0c32a6f0520 |
"""
Defines how the GUI reads Abaqus files
"""
from __future__ import print_function
from six import iteritems
from six.moves import range
import os
import numpy as np
import vtk
from vtk import vtkLine, vtkTriangle, vtkQuad, vtkTetra
from vtk.util.numpy_support import numpy_to_vtk
from pyNastran.gui.gui_objects.gui... | saullocastro/pyNastran | pyNastran/converters/dev/abaqus/abaqus_io.py | Python | lgpl-3.0 | 13,782 | [
"VTK"
] | c630138812e9173e2948889238357be23d7fddc8b3abc7bef67415a738be59c1 |
r"""
This module is a ParaViewWeb server application.
The following command line illustrate how to use it::
$ pvpython .../pv_web_catalyst.py --data-dir /.../path-to-your-data-directory
--data-dir is used to list that directory on the server and let the client choose a file to load.
Any P... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/Web/Python/paraview/web/pv_web_catalyst.py | Python | gpl-3.0 | 10,291 | [
"ParaView",
"VTK"
] | 0319d8bc1da5ccfb921e06d15f6555d09fd01a5e47ae5e03337c478160b2669c |
#
# When publishing work that uses these basis sets, please use the following citation:
#
# K.G. Dyall, Theor. Chem. Acc. (1998) 99:366; addendum Theor. Chem. Acc. (2002) 108:365;
# revision Theor. Chem. Acc. (2006) 115:441. Basis sets available from the Dirac web site,
# http://dirac.chem.sdu.dk.
Pt = [[0, -1, [623... | sunqm/pyscf | pyscf/gto/basis/dyall_qz.py | Python | apache-2.0 | 8,871 | [
"DIRAC"
] | 59265386df97b977ddbdeaa2161915e0dcbf381b88fe504bc1ca2e275b22e890 |
# Copyright (C) 2016-2019 The ESPResSo project
# Copyright (C) 2014 Olaf Lenz
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or... | KaiSzuttor/espresso | src/python/espressomd/gen_code_info.py | Python | gpl-3.0 | 1,849 | [
"ESPResSo"
] | 1dd781ab55f995124555d307781dc9643039d00005fa45780b8f632d549ec43f |
#!/usr/bin/env python
"""Small script to test timing of loading records into a BioSQL database.
"""
from __future__ import print_function
import time
# set up the connection
from Bio import GenBank
from BioSQL import BioSeqDatabase
server = BioSeqDatabase.open_database(host="192.168.0.192", user="root",
... | updownlife/multipleK | dependencies/biopython-1.65/Scripts/Performance/biosql_performance_load.py | Python | gpl-2.0 | 1,048 | [
"Biopython"
] | cf737a084ab05c8508eaf571724cd3f0facfab7dbbf4558a0a046b03a003c4ce |
#! /usr/bin/env python
from openturns import *
from math import *
TESTPREAMBLE()
RandomGenerator().SetSeed(0)
try :
# 1D tests
distribution = Dirac(0.7)
print "Distribution ", distribution
# Is this distribution elliptical ?
print "Elliptical = ", distribution.isElliptical()
# Is this distr... | dbarbier/privot | python/test/t_Dirac_std.py | Python | lgpl-3.0 | 5,455 | [
"DIRAC"
] | 3f23ac4c55e270fb44405980df30ebe031f04a9deff422ed7481c18316ad5d68 |
#!/usr/bin/python
# Copyright 2017 SuperDARN Canada
#
# brian.py
# 2018-01-30
# Communicate with all processes to administrate the borealis software
import sys
import os
import zmq
import time
from datetime import datetime, timedelta
sys.path.append(os.environ["BOREALISPATH"])
if __debug__: # TODO need to get buil... | SuperDARNCanada/placeholderOS | tools/simulators/brian_testing/brian_test.py | Python | gpl-3.0 | 22,607 | [
"Brian"
] | 93d4572f9662fc8091608b00d64e5953b4305f11a39662127035be93bbfb1179 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- https://www.mdanalysis.org
# Copyright (c) 2006-2017 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under t... | MDAnalysis/mdanalysis | package/MDAnalysis/coordinates/INPCRD.py | Python | gpl-2.0 | 2,866 | [
"Amber",
"MDAnalysis"
] | 86bae6566cc64d65f1109ead74f960068bcf6f8136b35979d6e9154e1f401ef6 |
from __future__ import print_function
from __future__ import unicode_literals
from __future__ import absolute_import
# pyeq2 is a collection of equations expressed as Python classes
#
# Copyright (C) 2013 James R. Phillips
# 2548 Vera Cruz Drive
# Birmingham, AL 35235 USA
#
# email: zunzun@zunzun.com
#
... | burkesquires/pyeq2 | Models_3D/Peak.py | Python | bsd-2-clause | 22,451 | [
"Gaussian"
] | 9a31750d027472fac1340ff952fb70f909214c7b12e135866e66b1c73c895422 |
#!usr/bin/env python
from pyspace.planet import PlanetArray
from pyevtk.hl import pointsToVTK
def dump_vtk(pa, filename, base = ".", **data):
"""Dumps vtk output to file 'base/filename'"""
if not data:
data = {'v_x': pa.v_x, 'v_y': pa.v_y, 'v_z': pa.v_z}
pointsToVTK(base + "/" + filename, pa.x, pa.... | adityapb/pyspace | pyspace/utils.py | Python | gpl-3.0 | 467 | [
"VTK"
] | 387f5a51268ea633292cdfcc43387a4b0743caad742572dd7aec31f8f810b15f |
# -*- coding: utf-8 -*-
"""
Created on Fri Sep 5 12:26:40 2014
:module-author: steffen
:filename: config.py
This module provides a highlevel layer for reading and writing config files.
There must be a file called "config.ini" in the root-folder of the project.
The file has to be of the following structure to be imp... | oemof/oemof_pg | src/oemof/db/config.py | Python | gpl-3.0 | 3,939 | [
"NetCDF"
] | a7811a7df492635313b42d9a669dcb90a6b80d8759f5030c6a3a110875746c31 |
'''
This script demonstrates how to create a periodic Gaussian process
using the *gpiso* function.
'''
import numpy as np
import matplotlib.pyplot as plt
from sympy import sin, exp, pi
from rbf.basis import get_r, get_eps, RBF
from rbf.gproc import gpiso
np.random.seed(1)
period = 5.0
cls = 0.5 # characteristic le... | treverhines/RBF | docs/scripts/gproc.e.py | Python | mit | 1,343 | [
"Gaussian"
] | e3cdb541351bd51e9028a1c3d85af8769ded351ac77c7ee191ce8029b37bf82a |
# Graph Algorithms using basic python Constructs.
# Narayana Chikkam, Dec, 22, 2015.
from collections import defaultdict
from heapq import *
import itertools
import copy
from lib.unionfind import (
UnionFind
)
from lib.prioritydict import (
priorityDictionary
)
class Vertex:
def __init__(self, id):
... | NicovincX2/Python-3.5 | Algorithmique/Algorithme/Algorithme de la théorie des graphes/graph_lib.py | Python | gpl-3.0 | 28,701 | [
"VisIt"
] | 4822b175bb2b8513f862c346ea5602e8dea083b5b74bd28f8a12a90d45691663 |
import ocl as cam
import camvtk
import time
import vtk
import datetime
if __name__ == "__main__":
myscreen = camvtk.VTKScreen()
myscreen.setAmbient(20,20,20)
myscreen.camera.SetPosition(20, 30, 50)
myscreen.camera.SetFocalPoint(5, 5, 0)
stl = camvtk.STLSurf(filename="stl/demo.stl")
... | tectronics/opencamlib | scripts/kdtree_movie2.py | Python | gpl-3.0 | 5,564 | [
"VTK"
] | 302de45d11850d7f2db06a336038d76d2e0bc4fdcffb7e597d3ec6bd50eb2d9d |
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use ... | Kami/libcloud | libcloud/compute/drivers/kubevirt.py | Python | apache-2.0 | 51,562 | [
"VisIt"
] | ac1c2d26baaac818c7aecafe76303071ac01dea299126a873e762822aeed2ffe |
""" The Script class provides a simple way for users to specify an executable
or file to run (and is also a simple example of a workflow module).
"""
import os
import sys
import re
import stat
import shlex
import distutils.spawn # pylint: disable=no-name-in-module,no-member,import-error
from DIRAC import gLogger... | fstagni/DIRAC | Workflow/Modules/Script.py | Python | gpl-3.0 | 5,035 | [
"DIRAC"
] | 42abbd62ab388a5c698124303a03a3c371c22b6cef772a5920b7ba804eb8ca09 |
# coding: utf-8
from __future__ import unicode_literals, division, print_function
import unittest
import random
from custodian.custodian import Job, ErrorHandler, Custodian, Validator
import os
import glob
import shutil
import subprocess
import yaml
"""
Created on Jun 1, 2012
"""
__author__ = "Shyue Ping Ong"
__copy... | xhqu1981/custodian | custodian/tests/test_custodian.py | Python | mit | 7,328 | [
"VASP"
] | 60fec0c6b64e714f46d6d56e7eca141df9b549797b70a3e966684b26cd7107ac |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.