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# Copyright 2000-2002 Andrew Dalke.
# Copyright 2002-2004 Brad Chapman.
# Copyright 2006-2010 by Peter Cock.
# All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Represent a Seque... | bryback/quickseq | genescript/Bio/SeqRecord.py | Python | mit | 47,663 | [
"BioPerl",
"Biopython"
] | 96343ae9842a1bfacfd9bfbb8338348672006c0c6db84d73ac436dbd850e6071 |
# TODO:
# * Deal with hot plugging / unplugging of sticks
# * Can I get a unique ID for a model / instance of a stick?
import pyglet
from direct.showbase.ShowBase import ShowBase
from panda3d.core import WindowProperties
from panda3d.core import Filename
class World(ShowBase):
def __init__(self):
Show... | TurBoss/HostilGalaxy | test_joystick.py | Python | gpl-3.0 | 1,858 | [
"Galaxy"
] | 3b6fa0f76bc6ce92ab69cb65bc18eb73cfb5f42945d3473c4170a2baed2e1595 |
# -*- coding: utf-8 -*-
"""
weight.py
RAPIDpy
Created by Alan D Snow, 2016.
Based on RAPID_Toolbox for ArcMap
License: BSD 3-Clause
"""
import csv
from datetime import datetime
from functools import partial
from netCDF4 import Dataset
import numpy as np
from pyproj import Proj, transform
from shap... | erdc-cm/RAPIDpy | RAPIDpy/gis/weight.py | Python | bsd-3-clause | 16,840 | [
"NetCDF"
] | c1ece6667c019943d3abac4edf98fea5463e415dce05f26ddd1916e6006935f7 |
# Copyright 2004 by James Casbon. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""
Code to deal with COMPASS output, a program for profile/profile comparison.
Compass is des... | bryback/quickseq | genescript/Bio/Compass/__init__.py | Python | mit | 6,865 | [
"Biopython"
] | 0af25a39727bab8e50d425ec5539f4c1bcc6ae59387747548e4b85752a25d5f7 |
#
# Copyright 2018 Analytics Zoo Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | intel-analytics/analytics-zoo | pyzoo/zoo/chronos/autots/model/__init__.py | Python | apache-2.0 | 4,918 | [
"ORCA"
] | 61fd979659cc231a436976a228d7d6a2cfce7b0f2bb758623c1b4f41fc85bddb |
# This script is part of pymaid (http://www.github.com/schlegelp/pymaid).
# Copyright (C) 2017 Philipp Schlegel
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 ... | schlegelp/pymaid | pymaid/morpho.py | Python | gpl-3.0 | 32,509 | [
"NEURON"
] | 09009e49388c6cbf2ff3dd6b72d70990b739d92eb6dd4e23eb704e39e4c8fbc8 |
###############################
# This file is part of PyLaDa.
#
# Copyright (C) 2013 National Renewable Energy Lab
#
# PyLaDa is vasp high throughput computational platform for Physics. It aims to make it easier to submit
# large numbers of jobs on supercomputers. It provides vasp python interface to physical inpu... | pylada/pylada-light | tests/vasp/test_relax_attribute.py | Python | gpl-3.0 | 4,113 | [
"CRYSTAL",
"VASP"
] | 79df7f9421d9df74ad7e4c16e70e4af2c0c8ab1cb26fa8714e1b64787661ada5 |
"""Reads the fasttext word embeddings
Visit: https://fasttext.cc/docs/en/english-vectors.html#format"""
import os
import numpy as np
import anna.data.utils as utils
DESTINATION = "fasttext"
NAME = "wiki-news-300d-1M-subword.vec"
ZIP_NAME = NAME + ".zip"
URL = "https://s3-us-west-1.amazonaws.com/fasttext-vectors/" + ... | jpbottaro/anna | anna/data/dataset/fasttext.py | Python | mit | 2,392 | [
"VisIt"
] | d8c105f0c04e60db873cc1518de087528650276dcbb06d87f4007c117bc24c2f |
import director
import math
import textwrap
import drc as lcmdrc
import bot_core as lcmbotcore
import vtkAll as vtk
from director import transformUtils
from director import visualization as vis
from director import objectmodel as om
from director import lcmUtils
from director import ikconstraints
from director import c... | patmarion/director | src/python/director/drivingplanner.py | Python | bsd-3-clause | 69,117 | [
"VTK"
] | 4f8f466808d21e6b04dae7be8140f3fccd15f348b28280d37a56c46af5065893 |
#
# QAPI command marshaller generator
#
# Copyright IBM, Corp. 2011
#
# Authors:
# Anthony Liguori <aliguori@us.ibm.com>
# Michael Roth <mdroth@linux.vnet.ibm.com>
#
# This work is licensed under the terms of the GNU GPLv2.
# See the COPYING.LIB file in the top-level directory.
from ordereddict import OrderedDict... | AVEx-6502/qemu-6502 | scripts/qapi-commands.py | Python | gpl-2.0 | 11,725 | [
"VisIt"
] | 9ef06d25e1e0841402fbba24ab7f2ecfd762bf08f8ed2cad206891b6a50cde71 |
"""
This module defines export functions for decision trees.
"""
# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Dawe <noel@dawe.me>
# Satrajit Gosh <satrajit.ghosh@gmail.com>
# Trevor... | DailyActie/Surrogate-Model | 01-codes/scikit-learn-master/sklearn/tree/export.py | Python | mit | 15,893 | [
"Brian"
] | 04e67b23ec938c124123f8f014d45560b5e45b74a75dc4e49d69b597cb9a5359 |
# Copyright (c) 2009-2021 The Regents of the University of Michigan
# This file is part of the HOOMD-blue project, released under the BSD 3-Clause
# License.
"""Utilities."""
import io
from collections.abc import Iterable, Mapping
from copy import deepcopy
def _to_camel_case(string):
"""Switch from snake to cam... | joaander/hoomd-blue | hoomd/util.py | Python | bsd-3-clause | 8,115 | [
"HOOMD-blue"
] | 406371437ff2b7a8bdf446b204e8c801629d34f5540f8baabc4f5e361bdc26bd |
# Copyright 2010 Hakan Kjellerstrand hakank@bonetmail.com
#
# Licensed under the Apache License, Version 2.0 (the 'License');
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... | petesburgh/or-tools | examples/python/mr_smith.py | Python | apache-2.0 | 3,319 | [
"VisIt"
] | 0fae9d07b268003cc73813a6712a7d10141a4bb1e4a28b4fb7b4371c614ef7c8 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2013 Radim Rehurek <me@radimrehurek.com>
# Licensed under the GNU LGPL v2.1 - http://www.gnu.org/licenses/lgpl.html
"""
Deep learning via word2vec's "skip-gram and CBOW models", using either
hierarchical softmax or negative sampling [1]_ [2]_.
The train... | vvw/gensim | gensim/models/word2vec.py | Python | gpl-3.0 | 66,200 | [
"VisIt"
] | c41e074070927a4de121356ffc2e8701d849f3a25411cae9c3fcc7d6fc007b66 |
#
# Copyright (c) 2009-2015, Jack Poulson
# All rights reserved.
#
# This file is part of Elemental and is under the BSD 2-Clause License,
# which can be found in the LICENSE file in the root directory, or at
# http://opensource.org/licenses/BSD-2-Clause
#
import El
n0=15
n1=15
output = False
display = True
wor... | mcopik/Elemental | examples/interface/BPComplexDense.py | Python | bsd-3-clause | 2,569 | [
"Gaussian"
] | 6b28c9fcd2f537decb9d0deb51cbd7628fc31827d97d9c899300491876f72621 |
#!/usr/bin/env python
# Copyright 2017-2021 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/pbc/cc/kccsd_uhf.py | Python | apache-2.0 | 59,554 | [
"PySCF"
] | 7b6e496c0a496783998630a4051d1ef0e670073481a2404aa53a7de2b1648c30 |
'''
Description
To adapt Brian T's regressions stats code
to our new plotting interface, we revise
his _NeStatsHelper funcion to deliver a Table
string that we can write to a GUI object.
'''
from __future__ import division
from __future__ import print_function
#created by Brian Trethewey
#
#neGrapher is primary interfa... | popgengui/negui | agestrucne/pgregressionstats.py | Python | agpl-3.0 | 11,240 | [
"Brian"
] | 12c5059f81f1a805f40d30e7149978699068b460968956c65cb3976e8ef93ac3 |
"""
usage: scramble.py [egg_name]
With no arguments, scrambles all eggs necessary according to the
settings in universe_wsgi.ini.
egg_name - Scramble only this egg (as defined in eggs.ini) or 'all'
for all eggs (even those not required by your settings).
"""
import os, sys, logging
root = logging.getLogg... | volpino/Yeps-EURAC | scripts/scramble.py | Python | mit | 1,050 | [
"Galaxy"
] | 8af5e0a8df0427bbd38ecf3449ff3ed4c251f4592bc0a0eb920ac61f566de15a |
# Copyright (c) 2008-2009 Participatory Culture Foundation
# See LICENSE for details.
from datetime import datetime, timedelta
from django.core import mail
from django.conf import settings
from django.contrib.auth.models import User
from channelguide.channels.models import Channel
from channelguide.user_profile.mode... | kmshi/miroguide | channelguide/notes/tests.py | Python | agpl-3.0 | 14,380 | [
"Brian"
] | 43fd3d5c16b50b4d7d00e4b15055c92073a6ddcba09161f92a0463b7bec0efaf |
"""
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 3 of the License, or
(at your option) any later version.
Written (W) 2013 Heiko Strathmann
"""
from kameleon_mcmc.distribution.Gauss... | karlnapf/kameleon-mcmc | kameleon_mcmc/gp/scripts/circle_rect_hybrid_gaussian_ard.py | Python | bsd-2-clause | 3,207 | [
"Gaussian"
] | 351c11575f48e262acfe34a0ae9845283f25a88ccf5752e4241f12f7da5f291a |
from gpaw.utilities import unpack
from ase.units import Hartree
import cPickle
import numpy as np
from gpaw.mpi import world, rank, send_string, receive_string, broadcast_string
from gpaw.utilities.blas import gemm
from gpaw.utilities.timing import Timer
from gpaw.utilities.lapack import inverse_general
import copy
imp... | robwarm/gpaw-symm | gpaw/transport/tools.py | Python | gpl-3.0 | 37,300 | [
"ASE",
"GPAW"
] | 6ee265ad7b12f873ec5bb4b379a7303b68dae70337ee8c1d7b12bee40e325f9b |
#
# Copyright 2018 Analytics Zoo Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | intel-analytics/analytics-zoo | pyzoo/test/zoo/orca/learn/jep/test_pytorch_estimator_for_save_load.py | Python | apache-2.0 | 4,255 | [
"ORCA"
] | 1ff1f86b3d4095a34d590c60e67de71aa8baee328b9aa954a45feaee52f82c85 |
# Copyright 1999-2000 by Jeffrey Chang. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
# Patches by Mike Poidinger to support multiple databases.
# Updated by Peter Cock in 2007... | BlogomaticProject/Blogomatic | opt/blog-o-matic/usr/lib/python/Bio/Blast/NCBIStandalone.py | Python | gpl-2.0 | 90,826 | [
"BLAST",
"Biopython"
] | 2dcfbedda805ea22753f5e57052c964a26a032fad93a731d3ce61a726a1a9c12 |
#!/usr/bin/env python
# Copyright 2015 The Kubernetes Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | sakshamsharma/kubernetes | cluster/juju/layers/kubernetes-worker/reactive/kubernetes_worker.py | Python | apache-2.0 | 32,928 | [
"CDK"
] | a54a01d99ceeae8f70dbc163c92b11f048f1f7fc258ba9b4410711e19e161879 |
#
# This program is free software you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation either version 3 of the License, or
# (at your option) any later version.
#
# Written (C) 2012 Heiko Strathmann
#
from numpy import *
from pylab i... | yorkerlin/shogun | examples/undocumented/python_modular/graphical/statistics_hsic.py | Python | gpl-3.0 | 6,117 | [
"Gaussian"
] | dce09f55c434f7f03fbc66924140699b64dc122453727e3e35e4b0759ddcadcf |
#!/usr/bin/env python
# -*- Mode: Python; py-indent-offset: 4 -*-
# vim: tabstop=4 shiftwidth=4 expandtab
#
# Copyright (C) 2010 Red Hat, Inc., John (J5) Palmieri <johnp@redhat.com>
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License a... | Distrotech/pygobject | demos/gtk-demo/demos/combobox.py | Python | lgpl-2.1 | 12,076 | [
"COLUMBUS"
] | aad498639762daeb5c13114f33ce8eab384ea2c10d5969eb62483ca69b032506 |
from os import path
from colorsys import hsv_to_rgb, rgb_to_hsv
from collections import OrderedDict
from random import shuffle
import numpy
from pysces.PyscesModelMap import ModelMap
from pysces import Scanner
import pysces
from matplotlib.pyplot import get_cmap
from .. import modeltools
from ..latextools import Late... | exe0cdc/PyscesToolbox | psctb/analyse/_ratechar.py | Python | bsd-3-clause | 41,049 | [
"PySCeS"
] | fa3c55ca935d9514055a8b62cecff11946d8f79dd31c542aa15dcfccce5fc9b6 |
""" test StoragElement
"""
import os
import tempfile
import mock
import unittest
import itertools
from diraccfg import CFG
from DIRAC import S_OK
from DIRAC.Resources.Storage.StorageElement import StorageElementItem
from DIRAC.Resources.Storage.StorageBase import StorageBase
from DIRAC.ConfigurationSystem.Client.Co... | DIRACGrid/DIRAC | src/DIRAC/Resources/Storage/test/Test_StorageElement.py | Python | gpl-3.0 | 32,184 | [
"DIRAC"
] | a954429f68b61684610aab253310565cef1d15d0bcf1d4607949892f2d462a98 |
# -*- coding: utf-8 -*-
#
# This file is part of cclib (http://cclib.github.io), a library for parsing
# and interpreting the results of computational chemistry packages.
#
# Copyright (C) 2006-2015, the cclib development team
#
# The library is free software, distributed under the terms of
# the GNU Lesser General Pub... | ghutchis/cclib | src/cclib/parser/daltonparser.py | Python | lgpl-2.1 | 47,748 | [
"Dalton",
"Gaussian",
"cclib"
] | 548d856f582363c2ba8397bd5f6308d6efc9be92c5c08dca6e303db16b9e5eb7 |
# TODO(colin): fix these lint errors (http://pep8.readthedocs.io/en/release-1.7.x/intro.html#error-codes)
# pep8-disable:E128
"""Linter that warns against files that aren't following frontend best
practices.
At the moment this checks for handlebars, less, and css files and complains if
any attempts are made to add new... | Khan/khan-linter | contrib/frontend_best_practices_lint.py | Python | apache-2.0 | 25,800 | [
"VisIt"
] | 7cf3e92482212dfe590724d30a3c1d21528e8b79cfca6d574185d174fc667054 |
# sql/compiler.py
# Copyright (C) 2005-2012 the SQLAlchemy authors and contributors <see AUTHORS file>
#
# This module is part of SQLAlchemy and is released under
# the MIT License: http://www.opensource.org/licenses/mit-license.php
"""Base SQL and DDL compiler implementations.
Classes provided include:
:class:`~sql... | SohKai/ChronoLogger | web/flask/lib/python2.7/site-packages/sqlalchemy/sql/compiler.py | Python | mit | 79,310 | [
"VisIt"
] | 9a53a7bb12b759843f6730d1a356855625f8225bdb9b2e22cc500af168f4c1c7 |
"""
Testing the CTI Correction Algorithm
====================================
This script can be used to test the CTI correction algorithm performance.
:requires: NumPy
:requires: PyFITS
:requires: matplotlib
:version: 0.3
:author: Sami-Matias Niemi
:contact: s.niemi@ucl.ac.uk
"""
import matplotlib
matplotlib.rc('t... | sniemi/EuclidVisibleInstrument | analysis/testCTIcorrection.py | Python | bsd-2-clause | 28,754 | [
"Galaxy",
"Gaussian"
] | 73e25729dbd3de9c0b65244593cf394c81770fac74d4522c2806b55dc9ee496b |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
try:
import builtins as builtin
except ImportError:
import __builtin__ as builtin
from os.path import getmtime, exists
import time
import types
from Cheetah.Version import MinCompatib... | MOA-2011/e2openplugin-OpenWebif | plugin/controllers/views/web/serviceplayable.py | Python | gpl-2.0 | 5,379 | [
"VisIt"
] | 58b2127ec3db821aae3c20d46ce04ea644ba3cda8a196eb6c487142fe784abc6 |
# (C) British Crown Copyright 2010 - 2014, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | Jozhogg/iris | lib/iris/tests/system_test.py | Python | lgpl-3.0 | 3,527 | [
"NetCDF"
] | de35cdec596c11954e2360eeed958049b60bd69ad13279d25364875748943847 |
"""
This migration script adds the request_event table and
removes the state field in the request table
"""
from sqlalchemy import *
from sqlalchemy.orm import *
from sqlalchemy.exc import *
from migrate import *
from migrate.changeset import *
import datetime
now = datetime.datetime.utcnow
import sys, logging
log =... | volpino/Yeps-EURAC | lib/galaxy/model/migrate/versions/0027_request_events.py | Python | mit | 3,386 | [
"Galaxy"
] | fdbcc446519700c62f916b7818304db4ddd8810809b8975fd1cbbcce0b6c2b91 |
# Copyright (c) 2003-2013 LOGILAB S.A. (Paris, FRANCE).
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
# Copyright (c) 2009-2010 Arista Networks, Inc.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
... | HackFisher/depot_tools | third_party/pylint/checkers/base.py | Python | bsd-3-clause | 54,520 | [
"VisIt"
] | 1d6ae847730414cffc429642b371d19a760af0ea20d5826b06182d9774dbc4df |
# (c) 2015, Brian Coca <bcoca@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.... | bootswithdefer/ansible | v2/ansible/plugins/lookup/url.py | Python | gpl-3.0 | 1,545 | [
"Brian"
] | 37072a7781c1159e9dab917e1e4480e497c982cf327ed253ee8a40dde5c872ef |
########################################################################
# $HeadURL$
# File : DIRACPilotDirector.py
# Author : Ricardo Graciani
########################################################################
"""
Dirac PilotDirector class, it uses DIRAC CE backends to submit and monitor pilots.
It include... | sposs/DIRAC | WorkloadManagementSystem/private/DIRACPilotDirector.py | Python | gpl-3.0 | 13,504 | [
"DIRAC"
] | ec9061551a2ca155f946deabb775244e96f838d1739d5a963d3b26ac759bb4d4 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# freeseer - vga/presentation capture software
#
# Copyright (C) 2011, 2013 Free and Open Source Software Learning Centre
# http://fosslc.org
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Licens... | Freeseer/freeseer | src/freeseer/tests/framework/config/persist/__init__.py | Python | gpl-3.0 | 2,620 | [
"VisIt"
] | ccb36ba990715e4eef9050d50a9c6360d1db55c6159361fbfc6dc760e59f174f |
#!/usr/bin/python
# -*- coding: utf-8 -*-
################################################################################
#
# RMG - Reaction Mechanism Generator
#
# Copyright (c) 2002-2010 Prof. William H. Green (whgreen@mit.edu) and the
# RMG Team (rmg_dev@mit.edu)
#
# Permission is hereby granted, free of c... | pierrelb/RMG-Py | rmgpy/data/solvation.py | Python | mit | 39,130 | [
"VisIt"
] | 393324c4d67a5b6fa12b15b11c8e51bdc021ba379b9c01daa1eb59d0d20bf084 |
import numpy as np
from numpy.lib.stride_tricks import as_strided
from fft_correlator import FFTCorrelator
from grid_spec import GridSpec
class DirectPIV(object):
"""
Class for the initial Piv.
The images are error checked and padded if needed.
After initialization a GridSpec is set and a grid is crea... | jr7/pypiv | pypiv/piv/direct_piv.py | Python | bsd-3-clause | 4,514 | [
"Gaussian"
] | 5a2099efdde778e41d57668c28272393be4bed20cea539d2068ebba92d52cf9a |
from __future__ import print_function
from __future__ import division
from builtins import range
from past.utils import old_div
# the Scientific Python netCDF 3 interface
# http://dirac.cnrs-orleans.fr/ScientificPython/
#from Scientific.IO.NetCDF import NetCDFFile as Dataset
# the 'classic' version of the netCDF4 pytho... | kevinpetersavage/BOUT-dev | examples/orszag-tang/generate.py | Python | gpl-3.0 | 3,675 | [
"DIRAC",
"NetCDF"
] | 02e13a1c177fd3cc8519dbe0b33c86752bdf50d8e204b23dad3a0cf340eff9ba |
#
# GA-Parser v1.1
# This program carves and parses Google Analytic vales (utma utmb, utmz)
# from a file (unallocated, memory dump, pagefile, etc.)
# and outputs them into a tsv form.
#
# To read more about it, visit my blog at http://az4n6.blogspot.com/
#
# Copyright (C) 2014 Mari DeGrazia (arizona4n6@gmail.com)
#
#... | mantarayforensics/mantaray | Tools/Python/ga_parser.py | Python | gpl-3.0 | 41,010 | [
"VisIt"
] | ac7db979c30d5b7892b562a5e350d3661354934f94c86792b5bd08768d3f9f7d |
"""Support for package tracking sensors from 17track.net."""
import logging
from datetime import timedelta
import voluptuous as vol
from homeassistant.components.sensor import PLATFORM_SCHEMA
from homeassistant.const import (
ATTR_ATTRIBUTION, ATTR_LOCATION, CONF_PASSWORD, CONF_SCAN_INTERVAL,
CONF_USERNAME)
f... | jnewland/home-assistant | homeassistant/components/seventeentrack/sensor.py | Python | apache-2.0 | 10,914 | [
"VisIt"
] | a71dd8af7f48f77e7c4dea91934a1b0f44b2d4ab1639ae4a2c23c8747cce7e13 |
#!/usr/bin/env python
# Copyright 2014-2018,2021 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
... | sunqm/pyscf | pyscf/pbc/gto/basis/parse_cp2k.py | Python | apache-2.0 | 3,189 | [
"CP2K",
"PySCF"
] | e65d282fb1bf60b4ec82fc2dd09a99557ea1426c70c8a5c59ca42afd6eb46531 |
## Without order, everything goes to chaos
## Some applicatons that can be made much easier by pre-sorting
import math
## INTERVALS PROBLEM
## Suppose that n closed intervals [a[i], b[i]] on the real line are given.
## Find the maximal k such that there exists a point covered by k intervals,
## i.e., the maximal numb... | bharcode/Coursera | python_algorithms/sorting/sort_applications.py | Python | gpl-2.0 | 9,440 | [
"VisIt"
] | 4a0513f3853ce9d0562766ba4fbcf4b7e996328c7a0a828a182869c591b57da9 |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RFdbInfiniummethylationHg18(RPackage):
"""Compiled HumanMethylation27 and HumanMethylation... | iulian787/spack | var/spack/repos/builtin/packages/r-fdb-infiniummethylation-hg18/package.py | Python | lgpl-2.1 | 1,117 | [
"Bioconductor"
] | e53e32de0fca6aa374f9018d3c1b4e733d9302fe09bd96ec48b961678012e856 |
# Copyright (c) 2010 OpenStack Foundation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to ... | openstack/swift | test/unit/common/middleware/test_staticweb.py | Python | apache-2.0 | 41,104 | [
"VisIt"
] | 5c0183dcc69bb7b1b0c5fcbc2a9cfabd66473b68a6b5ebd298edd9ea0842fa17 |
"""
Testing for Gaussian Process module (sklearn.gaussian_process)
"""
# Author: Vincent Dubourg <vincent.dubourg@gmail.com>
# Licence: BSD 3 clause
from nose.tools import raises
from nose.tools import assert_true
import numpy as np
from sklearn.gaussian_process import GaussianProcess
from sklearn.gaussian_process ... | valexandersaulys/airbnb_kaggle_contest | venv/lib/python3.4/site-packages/sklearn/gaussian_process/tests/test_gaussian_process.py | Python | gpl-2.0 | 6,813 | [
"Gaussian"
] | 292232045670d8ed7f9502cf6f01ffee4c2a7cd26d2d31650593f82309b75d0c |
##
## This file is part of the libsigrokdecode project.
##
## Copyright (C) 2014 Sławek Piotrowski <sentinel@atteo.org>
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundation; either version 2 of ... | sigrokproject/libsigrokdecode | decoders/rfm12/pd.py | Python | gpl-3.0 | 18,375 | [
"CRYSTAL"
] | ce4a9d8a02c39a20ab479038056b416344cdc31841ad092097b6941e512b3028 |
import numpy as np
import logging
from collections import namedtuple
#from bfgs import lineSearch, BFGS
from optimization_exceptions import LineSearchError
from pele.optimize import Result
__all__ = ["LBFGS"]
_logger = logging.getLogger("pele.optimize")
class LBFGS(object):
"""
minimize a function using th... | js850/pele | pele/optimize/_lbfgs_py.py | Python | gpl-3.0 | 21,527 | [
"PyMOL"
] | 9516779a76e5c83ec2385dc2719a4bd6f81fb119d5742b9a0910245a8cbe2879 |
import numpy as np
def logsumexp(arr, axis=0):
"""Computes the sum of arr assuming arr is in the log domain.
Returns log(sum(exp(arr))) while minimizing the possibility of
over/underflow.
"""
arr = np.rollaxis(arr, axis)
# Use the max to normalize, as with the log this is what accumulates
#... | rendanim/HMM_Speech_Recognition | tools2.py | Python | gpl-3.0 | 1,326 | [
"Gaussian"
] | aeb6928440d0df3748b4051a70438288ecb6d43a7faaac0703afbb8d5623fe0d |
# -*- coding: utf-8 -*-
from __future__ import division
import os
from collections import Counter
import numpy as np
from scipy import sparse
from pygsp import utils
from .fourier import FourierMixIn
from .difference import DifferenceMixIn
from ._io import IOMixIn
from ._layout import LayoutMixIn
class Graph(Four... | epfl-lts2/pygsp | pygsp/graphs/graph.py | Python | bsd-3-clause | 33,936 | [
"VisIt"
] | 0fe2e54541059b29bec126a4f1af267f1461ebb7f79d96ad0b21b3c52f4b43f3 |
'''This script demonstrates how to build a variational autoencoder with Keras.
Reference: "Auto-Encoding Variational Bayes" https://arxiv.org/abs/1312.6114
'''
import numpy as np
import matplotlib.pyplot as plt
from scipy.stats import norm
from keras.layers import Input, Dense, Lambda, Layer, concatenate
from keras.mo... | Fuchai/Philosophy-Machine | vae_mining/vae.py | Python | apache-2.0 | 5,617 | [
"Gaussian"
] | 38d9b7d099bd4b1b9e306b9b2c49762ad81cdf05241429636936c4b161c87c23 |
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not... | chirino/proton | tests/proton_tests/messenger.py | Python | apache-2.0 | 6,448 | [
"Galaxy"
] | 2d88ac23dce00a72f55b57d9e9cc69717e9deb54573a84a16e108d70d042bb63 |
#!/usr/bin/env python
"""
Script to run the generation of phoSim instance catalogs
"""
from __future__ import with_statement, absolute_import, division, print_function
import time
import os
import argparse
import pandas as pd
from sqlalchemy import create_engine
from lsst.utils import getPackageDir
from lsst.sims.catUt... | LSSTDESC/Twinkles | bin/generatePhosimInput.py | Python | mit | 6,329 | [
"VisIt"
] | 759a1a2b4378017131df9bf2015047640eaa497630def147d0509db7db69f23a |
#!/nfs/farm/g/lsst/u1/software/redhat6-x86_64-64bit-gcc44/anaconda/2.3.0/bin/python
## runPhoSim.py - Run phoSim (one visit)
import os,sys
import subprocess,shlex
print '\n\n=====================================================================\n Entering runPhoSim.py\n================================================... | LSSTDESC/Twinkles | workflows/TW-phoSim-r3/runPhoSim.py | Python | mit | 7,723 | [
"VisIt"
] | 3a8ed1dd5be67cf2d541ecb9ef6a70345913bd9ab13ccf2390172f90ee87ed3c |
# Copyright 2000 by Bertrand Frottier . All rights reserved.
# Revisions 2005-2006 copyright Michiel de Hoon
# Revisions 2006-2009 copyright Peter Cock
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.... | BlogomaticProject/Blogomatic | opt/blog-o-matic/usr/lib/python/Bio/Blast/NCBIXML.py | Python | gpl-2.0 | 24,483 | [
"BLAST",
"Biopython"
] | 679e8a53711004d0e58ed46a986b15f827ec19cdf7a6d4673ee93b07dbcbd30d |
from simtk.openmm import app
import simtk.openmm as mm
from simtk import unit as u
integrator_type = "langevin2fs_barostat12"
#integrator_type = "langevin2fs"
#integrator_type = "langevin1fs"
#integrator_type = "langevin0.5fs"
n_steps = 500000000
output_frequency = 500
dcd_frequency = 5000
friction = 1.0 / u.picosec... | kyleabeauchamp/DensityTest | src/production_water.py | Python | gpl-2.0 | 1,884 | [
"OpenMM"
] | d167e8cf206a9dc873d5bbf568f77bc3ee2335b7b5eb4cc2c8956e109820d585 |
import os
import orca
import pandas as pd
from activitysim import activitysim as asim
from activitysim.cdap import cdap
"""
CDAP stands for Coordinated Daily Activity Pattern, which is a choice of
high-level activity pattern for each person, in a coordinated way with other
members of a person's household.
Because P... | bhargavasana/activitysim | activitysim/defaults/models/cdap.py | Python | agpl-3.0 | 2,056 | [
"ORCA"
] | db454916a3ec8ef7e89a70bce736dad2843d080c64e00baffda92bb6d794a54b |
'''
Implementation of Gaussian Mixture Models.
Author : Aleyna Kara(@karalleyna)
'''
import superimport
import jax.numpy as jnp
from jax import vmap, value_and_grad, jit
from jax.lax import scan
from jax.random import PRNGKey, uniform, split, permutation
from jax.nn import softmax
import distrax
from distrax._src.ut... | probml/pyprobml | scripts/mix_gauss_lib.py | Python | mit | 15,633 | [
"Gaussian"
] | abf803323380e234efdb55b0c18ecf3913c64313e6082298fceb5cd63c1453ed |
# -*- coding: utf-8 -*-
"""
==========================================
Brainstorm Elekta phantom dataset tutorial
==========================================
Here we compute the evoked from raw for the Brainstorm Elekta phantom
tutorial dataset. For comparison, see [1]_ and:
http://neuroimage.usc.edu/brainstorm/Tu... | mne-tools/mne-tools.github.io | 0.16/_downloads/plot_brainstorm_phantom_elekta.py | Python | bsd-3-clause | 6,071 | [
"Mayavi"
] | efa27c4664cfbabdfb045036e8d164abbbb8c3b23f546b83efc7c55d6a6f866a |
# encoding: utf-8
"""nanotube.py - Window for setting up Graphene sheets and ribbons.
"""
import gtk
from ase.gui.widgets import pack, cancel_apply_ok, oops
from ase.gui.setupwindow import SetupWindow
from ase.gui.pybutton import PyButton
from ase.structure import graphene_nanoribbon
import ase
import numpy as np
in... | slabanja/ase | ase/gui/graphene.py | Python | gpl-2.0 | 8,902 | [
"ASE"
] | c6337de2338bc929da7331488ded07b5283d9dff9e4038b6363d3981e48dea55 |
import os
srcdir = os.path.dirname(os.path.abspath(__file__))
import sys
sys.path.append(os.path.join(srcdir, '..', '..', 'python', 'lib'))
import copy
import numpy as np
from giss import giutil
import icebin
from icebin import ibgrid
from giss.ncutil import copy_nc
import netCDF4
import argparse
#from modele.constant... | citibeth/twoway | landice2/update_topo.py | Python | gpl-3.0 | 3,677 | [
"NetCDF"
] | 6522b94645a30d2d639df92d93bbf39f55b0a9c32d59c7d911f3258fdd45cd64 |
#!/usr/bin/env
"""
BS_Winds_NARR_6hr.py
Compare NARR Winds with NCEP V2 (with Mooring Winds) for 6hr intervals. Uses 3hr NARR and 6hr NCEP
Using Anaconda packaged Python
"""
#System Stack
import datetime
#Science Stack
import numpy as np
from scipy import stats
from netCDF4 import Dataset
# User Stack
import... | shaunwbell/FOCI_Analysis | ReanalysisRetreival_orig/BS_Winds/BS_Winds_NARR_hr.py | Python | mit | 24,994 | [
"NetCDF"
] | 4569c938372743afa91a882f0f51391f9cc5dfc5ba0e33bda9cc6fe896026091 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | MJJoyce/climate | examples/simple_model_to_model_bias.py | Python | apache-2.0 | 5,505 | [
"NetCDF"
] | db7f988b55ff47a0019edbe9908d9c888c192d9daa9400867dc1d49fe2cd0e2e |
# coding=utf-8
# Copyright 2019 The SEED Authors
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agre... | google-research/seed_rl | agents/policy_gradient/modules/continuous_control_agent.py | Python | apache-2.0 | 16,457 | [
"Gaussian"
] | e15272a448d20e67f9d278cfe318424e2791ec6c77cb8327691e2505dbaf1024 |
from brian.stdunits import *
from brian.units import *
F = 1
N_SUBPOP = 2
INTERCO_RATE = 0
INTERCO_STRENGTH = 0
PARAMETERS = {
'Common':
{'simu_dt' : 0.05*msecond,
'simu_length' : 3000*msecond,
'resample_dt' : 0.5*msecond,
'N_subpop' : N_SUBPOP,
'N_mitral' : N_SUBPOP*100*F,
'inte... | neuro-lyon/multiglom-model | src/paramsets/std_beta.py | Python | mit | 1,687 | [
"Brian"
] | 0b18935355d98fd9861b61ff817626d4bc83b15701fafea31acd6a451546606a |
import os
import pytest
import abipy.abilab as abilab
import abiflows.fireworks.tasks.abinit_common
import abiflows.fireworks.tasks.abinit_tasks as abinit_tasks
from abipy.electrons.gsr import GsrFile
from abipy.flowtk.utils import Directory
from fireworks.core.rocket_launcher import rapidfire
from abiflows.fireworks.... | davidwaroquiers/abiflows | abiflows/fireworks/integration_tests/itest_check_abiflow.py | Python | gpl-2.0 | 3,224 | [
"ABINIT"
] | 36d10e17efc23b5390b59daf15b9ae482bc76cb03a4557a64cd3fdb23c28973c |
###############################################################################
# Copyright (c) 2007-2018, National Research Foundation (Square Kilometre Array)
#
# Licensed under the BSD 3-Clause License (the "License"); you may not use
# this file except in compliance with the License. You may obtain a copy
# of the ... | ludwigschwardt/scikits.fitting | scikits/fitting/utils.py | Python | bsd-3-clause | 15,230 | [
"Gaussian"
] | 66d8c54002586874aa878501c4c1171280efcfcf458981fb9fa7d127492d350b |
"""
Unit tests for masquerade.
"""
import json
import pickle
from datetime import datetime
from importlib import import_module
from unittest.mock import patch
import pytest
import ddt
from operator import itemgetter # lint-amnesty, pylint: disable=wrong-import-order
from django.conf import settings
from django.test i... | edx/edx-platform | lms/djangoapps/courseware/tests/test_masquerade.py | Python | agpl-3.0 | 25,701 | [
"VisIt"
] | 51188aa43e75640a10a311628a19e668746617bec89f5cb60503334c2a3a0e74 |
import sys
import os
import glob
import inspect
import pylab as pl
from numpy import *
from scipy import optimize
import pickle
import time
import copy
cmd_folder = os.path.realpath(os.path.abspath(os.path.split(inspect.getfile(inspect.currentframe()))[0]) + "/templates")
if cmd_folder not in sys.path:
sys.path.in... | fedhere/SESNCfAlib | vaccaleibundgut.py | Python | mit | 4,704 | [
"Gaussian"
] | 12b14804cfcfca5dbb99858a37a48a8b6d499eef48f94492f0082b5585cc8696 |
import argparse
from director.consoleapp import ConsoleApp
from director import cameraview
from director import vtkAll as vtk
def parseChannelArgument(defaultChannel='CAMERA_LEFT'):
parser = argparse.ArgumentParser()
parser.add_argument('-c', '--channel', type=str, help='image channel', default=defaultChanne... | RobotLocomotion/director | src/python/tests/testImageView.py | Python | bsd-3-clause | 1,098 | [
"VTK"
] | 8af9faa6c9cc148b7327c30584a4a0b1285c0f21cd0b0f23fccaee2917886f65 |
import os
import theano
import theano.tensor as T
import numpy
from experimentation.experiments import run_theano_experiments, run_experiments_sklearn
from models.regression.deep_models.mlp import MLP
from models.regression.deep_models.dbn import DBN
from datasets import DatasetManager
from models.regression.sklearn_... | gdl-civestav-localization/cinvestav_location_fingerprinting | projects/cinvestav_fingerprinting/accuracy_experiment.py | Python | gpl-3.0 | 7,298 | [
"Gaussian"
] | 3274e93347ca3e81b892d7b7f1417d65a429acc60d4c7c35d998608038ae2814 |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkSplineFilter(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk.v... | chrisidefix/devide | modules/vtk_basic/vtkSplineFilter.py | Python | bsd-3-clause | 485 | [
"VTK"
] | 68cfb17f491741b7676ce43ec3b79cc5639095f695fe5beef457996f822c62f5 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import unicode_literals
import unittest
import os
from pymatgen.phasediagram.entries import PDEntryIO, PDEntry, \
GrandPotPDEntry, TransformedPDEntry
from pymatgen.core.periodic_table impo... | xhqu1981/pymatgen | pymatgen/phasediagram/tests/test_entries.py | Python | mit | 4,533 | [
"pymatgen"
] | 99ed04cdb8dd3004e519aba333baa85aaacd86058f527e45efb35e5a461bf388 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""Configuration file for template documentation."""
import os
import sys
try:
import sphinx_rtd_theme
except ImportError:
sphinx_rtd_theme = None
try:
from sphinxcontrib import spelling
except ImportError as e:
print(e)
spelling = None
# If extensi... | kallimachos/template | doc/conf.py | Python | gpl-3.0 | 7,434 | [
"Brian"
] | 3c0bb312345a25ff21f9160d5f4d383a7ff3f00f26f44e139a296da830025587 |
""" ElasticDB is a base class used to connect an Elasticsearch database and manages queries.
"""
from DIRAC import gLogger
from DIRAC.Core.Utilities.ElasticSearchDB import ElasticSearchDB
from DIRAC.ConfigurationSystem.Client.Utilities import getElasticDBParameters
__RCSID__ = "$Id$"
class ElasticDB( ElasticSearchD... | hgiemza/DIRAC | Core/Base/ElasticDB.py | Python | gpl-3.0 | 3,107 | [
"DIRAC"
] | 8f4410cfc970f2dc0a60a91abc8854e9e1534f02f5a652243bc13a4ed7620a91 |
from django.conf import settings
from django.core.management.base import BaseCommand, CommandError
from optparse import make_option
import os
import sys
try:
from django.contrib.staticfiles.handlers import StaticFilesHandler
USE_STATICFILES = 'django.contrib.staticfiles' in settings.INSTALLED_APPS
except Impor... | waseem18/oh-mainline | vendor/packages/django-extensions/django_extensions/management/commands/runserver_plus.py | Python | agpl-3.0 | 4,501 | [
"VisIt"
] | a0ee537e5f874dfb7cd7596a74f07e6e1d814713bb823658b402718b8117c7c4 |
# -*- coding: cp1252 -*-
"""
#########################################################################
Author: Shalin Shah, Vijay Dhameliya, Madhav Khakhar
Project: DNA Cloud
Graduate Mentor: Dixita Limbachya
Mentor: Prof. Manish K Gupta
Date: 5 November 2013
Website: www.guptalab.org/dnacloud
This module contains code... | guptalab/dnacloud | source/MainFrame.py | Python | mit | 57,098 | [
"VisIt"
] | 385a6b6f9958a2a936a80fb270fa5addcca36e4040853c6aa175a94a2bf79bbc |
'''
Created on Nov. 07, 2020
A module to read ERA5 data; this includes converting GRIB files to NetCDF-4,
as well as functions to load the converted and aggregated data.
@author: Andre R. Erler, GPL v3
'''
# external imports
import os.path as osp
import pandas as pd
import numpy as np
import netCDF4 as... | aerler/GeoPy | src/datasets/ERA5.py | Python | gpl-3.0 | 20,429 | [
"NetCDF"
] | 1b3ce7cadde96b79178bdefa5baa83bbfc6edb5a90cf808de20bd0c814509cb0 |
# -*- coding: utf-8 -*-
# YAFF is yet another force-field code.
# Copyright (C) 2011 Toon Verstraelen <Toon.Verstraelen@UGent.be>,
# Louis Vanduyfhuys <Louis.Vanduyfhuys@UGent.be>, Center for Molecular Modeling
# (CMM), Ghent University, Ghent, Belgium; all rights reserved unless otherwise
# stated.
#
# This file is pa... | molmod/yaff | yaff/conversion/test/test_gaussian.py | Python | gpl-3.0 | 5,408 | [
"Gaussian"
] | d31fe1992090ab5461b3d69a7a45d958b109984d9f6f434c34a1267f3777e22e |
from django import template
import markdown
from let_me_app import models
from django.utils.translation import gettext
from django.utils import timezone
register = template.Library()
@register.filter
def markdownify(text):
# safe_mode governs how the function handles raw HTML
return markdown.markdown(text, ... | oleg-chubin/let_me_play | let_me_app/templatetags/let_me_app.py | Python | apache-2.0 | 1,165 | [
"VisIt"
] | 22dfb174cdb861cbc5d4ddf32c15364e1d92b7288ecc41857417e17781080f75 |
#!/usr/bin/env python
# =============================================================================================
# MODULE DOCSTRING
# =============================================================================================
"""
Test YAML functions.
"""
# ====================================================... | pgrinaway/yank | Yank/tests/test_yaml.py | Python | lgpl-3.0 | 90,008 | [
"Gromacs",
"MDTraj",
"OpenMM"
] | fc9da92d5d97e536a788d9e54dbd9d295aa4e8ee6a2017b13a6f0a5d6280bffc |
# This file is generated by /galaxy/home/mgehrin/test/tmp/numexpr-2.4.3/setup.py
# It contains system_info results at the time of building this package.
__all__ = ["get_info","show"]
def get_info(name):
g = globals()
return g.get(name, g.get(name + "_info", {}))
def show():
for name,info_dict in globals(... | bxlab/HiFive_Paper | Scripts/HiCLib/numexpr-2.4.3/build/src.linux-x86_64-2.7/numexpr/__config__.py | Python | bsd-3-clause | 697 | [
"Galaxy"
] | 812d5e639263ad5230126f541a7847d2ac450cd43da41d47136797fcdce728be |
import pytest
from .addons import using
from .utils import *
import math
import numpy as np
import qcelemental as qcel
import psi4
from psi4.driver import qcdb
pytestmark = pytest.mark.quick
def hide_test_xtpl_fn_fn_error():
psi4.geometry('He')
with pytest.raises(psi4.UpgradeHelper) as e:
psi4.en... | ashutoshvt/psi4 | tests/pytests/test_misc.py | Python | lgpl-3.0 | 3,652 | [
"Psi4"
] | 41b003cba25b983fad005d9d457a9d1b9f6e6877414f525c4b0b48a05717d412 |
import ast
import logging
from sqlalchemy import and_, not_, or_
from sqlalchemy.sql.operators import ColumnOperators as operator
COMPARE_OPERATORS = {
ast.Eq: operator.__eq__,
ast.NotEq: operator.__ne__,
ast.Lt: operator.__lt__,
ast.LtE: operator.__le__,
ast.Gt: operator.__gt__,
ast.GtE: oper... | pegasus-isi/pegasus | packages/pegasus-python/src/Pegasus/service/_query.py | Python | apache-2.0 | 6,134 | [
"VisIt"
] | c246d4ec9cae31685cc27b609e6e9a9c459b86c36ec44199ee8db0d2d85b77e8 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# =============================================================================
## @file ostap/fitting/transform_pdf.py
# PDF for transformed variables
# @author Vanya BELYAEV Ivan.Belyaeve@itep.ru
# @date 2020-05-11
# ===========================================... | OstapHEP/ostap | ostap/fitting/transform_pdf.py | Python | bsd-3-clause | 5,716 | [
"Gaussian"
] | 08d1e63ca94b1239ea66593f0cc5d13fc691f621dadd06604a4738927317bd6f |
#!/usr/bin/env python
"""
"""
from __future__ import division, absolute_import
import logging
import numpy as np
import scipy as sp
import scipy.interpolate as spinterp
import time
import datetime as dt
import matplotlib.pyplot as plt
try:
from mayavi import mlab
except ImportError:
mlab = None
except (Value... | jswoboda/GeoDataPython | GeoData/plottingmayavi.py | Python | mit | 6,180 | [
"Mayavi"
] | 1ecec12e1eebe2d6ebd1457613dcdb86564c2108acbe94275a88cadb68740368 |
""" Collection of utilities for locating certs, proxy, CAs
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import os
import DIRAC
from DIRAC import gConfig
g_SecurityConfPath = "/DIRAC/Security"
def getProxyLocation():
"""Get t... | ic-hep/DIRAC | src/DIRAC/Core/Security/Locations.py | Python | gpl-3.0 | 6,026 | [
"DIRAC"
] | 0a3a502e238b26a2b8b6ddaba30a4cfba111a311a8633767914a27f3aa03efb6 |
#!/usr/bin/env python
import numpy as np
import sys, subprocess
import os
"""
This is a python program which creates a box of acn for use in lammps simulations.
"""
if len(sys.argv) != 4:
print("Usage python build_acn.py numacns numco2s type")
exit()
numacns=int(sys.argv[1])
numco2s=int(sys.argv[2])
type=int... | piskuliche/Python-Code-Collection | system_builds/acn/cxl/build_acn_cxl.py | Python | gpl-3.0 | 4,654 | [
"LAMMPS"
] | 6e084a72e570d3fef660dccfe15bf4825936ed5b22380d374342afd4c37937ad |
# -*- coding: utf-8 -*-
#
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
import warnings
from collections.abc import Iterable
from functools import wraps
import ctypes
import numpy as np
from scipy._lib.doccer import (extend_notes_in_docstring,
... | rgommers/scipy | scipy/stats/_continuous_distns.py | Python | bsd-3-clause | 280,760 | [
"CRYSTAL",
"DIRAC",
"Gaussian"
] | 369c968aa68b38dbc2ea9c15d6c48f542b442637ade3d97f11b1398f0c88b9cd |
"""scandir, a better directory iterator and faster os.walk(), now in the Python 3.5 stdlib
scandir() is a generator version of os.listdir() that returns an
iterator over files in a directory, and also exposes the extra
information most OSes provide while iterating files in a directory
(such as type and stat informatio... | benhoyt/scandir | scandir.py | Python | bsd-3-clause | 24,828 | [
"VisIt"
] | 3d52067007c851dedff29a37f28e192fdb0406cf742ade8533c39bc1701dbf01 |
"""K-means clustering"""
# Authors: Gael Varoquaux <gael.varoquaux@normalesup.org>
# Thomas Rueckstiess <ruecksti@in.tum.de>
# James Bergstra <james.bergstra@umontreal.ca>
# Jan Schlueter <scikit-learn@jan-schlueter.de>
# Nelle Varoquaux
# Peter Prettenhofer <peter.prettenh... | abhishekkrthakur/scikit-learn | sklearn/cluster/k_means_.py | Python | bsd-3-clause | 54,798 | [
"Gaussian"
] | 0d20162d9c61ca1630814ba3b178130628c6bb8d8bfb88481f21591a42f06925 |
'''
Created on Aug 3, 2011
@author: sean
'''
import _ast
from ..visitors import Visitor
class Replacer(Visitor):
'''
Visitor to replace nodes.
'''
def __init__(self, old, new):
self.old = old
self.new = new
def visitDefault(self, node):
for field in node._fields:
... | diana-hep/femtocode | lang/femtocode/thirdparty/meta/asttools/mutators/replace_mutator.py | Python | apache-2.0 | 2,046 | [
"VisIt"
] | a43d27460faee020e73b52bd72063422bc5e851cc1c0732ca0b9665f2d0e4c48 |
"""
A simple VTK widget for PyQt v4, the Qt v4 bindings for Python.
See http://www.trolltech.com for Qt documentation, and
http://www.riverbankcomputing.co.uk for PyQt.
This class is based on the vtkGenericRenderWindowInteractor and is
therefore fairly powerful. It should also play nicely with the
vtk3DWidget code.
... | liulion/mayavi | tvtk/pyface/ui/qt4/QVTKRenderWindowInteractor.py | Python | bsd-3-clause | 19,019 | [
"CRYSTAL",
"VTK"
] | 6a06837374a88618e107c4ef3850bfa3dcd4e3fa80a158b75ecb0e591b389ca7 |
# Copyright (C) 2009-2014 CEA/DEN, EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library ... | FedoraScientific/salome-hexablock | doc/pyplots/test_make_cyl_grid.py | Python | lgpl-2.1 | 1,958 | [
"VTK"
] | 54fa41155232989d63eea9719f9b7294d978ad5f491aa70805cdb4ad41fbcec0 |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-asset | tests/unit/gapic/asset_v1p2beta1/test_asset_service.py | Python | apache-2.0 | 86,657 | [
"Octopus"
] | fc4ba40f3cbe3325bee34dfb1e41ded5bd92e1bf6ee6fe37067fc51b1c5a43a9 |
# coding=utf-8
# from types import UnicodeType
from django.db import IntegrityError
from django.test import TestCase, TransactionTestCase
from django.utils.timezone import now
from freezegun import freeze_time
from feedback.models import get_model, Semester, Person, Veranstaltung, Einstellung, Mailvorlage
from feedb... | TheMangalex/pyfeedback | src/feedback/tests/test_models.py | Python | agpl-3.0 | 26,577 | [
"Brian"
] | 53033f3c03ecc039cd657ba04ad2819904fa8426484231730ee11074e8b58cf3 |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-dialogflow | tests/unit/gapic/dialogflow_v2beta1/test_agents.py | Python | apache-2.0 | 117,955 | [
"Octopus"
] | b616ea875ea31649fedc2a395555b8dfdbe66f35a1bcba138e55b4277ed9d7a2 |
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