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#!/usr/bin/env python
# Copyright 2017-2021 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/pbc/cc/kintermediates.py | Python | apache-2.0 | 22,280 | [
"PySCF"
] | a46f3751e76dd8453462be572d0375d15ab423e62a39edec70db4c77ce66cc9b |
import gc
import io
import random
import re
import string
import tempfile
from os import environ as env
import h5py
import netCDF4
import numpy as np
import pytest
from packaging import version
from pytest import raises
import h5netcdf
from h5netcdf import legacyapi
from h5netcdf.core import NOT_A_VARIABLE, Compatibi... | shoyer/h5netcdf | h5netcdf/tests/test_h5netcdf.py | Python | bsd-3-clause | 74,613 | [
"NetCDF"
] | c5c791c16ea70e8f6a0178969bafda9c7689ddfcb83bc45e7c9c105f6c7eea7f |
#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses... | ravibhure/ansible | lib/ansible/modules/network/avi/avi_applicationprofile.py | Python | gpl-3.0 | 6,723 | [
"VisIt"
] | 9f29b7abd53c591e48fd45d7bb45f22e49b7757958e1d95d07146048db1d9714 |
import operator as op
from functools import partial
import logging
import lib.const as C
import lib.visit as v
from .. import add_artifacts
from .. import util
from .. import sample
from ..meta import class_lookup
from ..meta.template import Template
from ..meta.clazz import Clazz
from ..meta.method import Method
fro... | plum-umd/pasket | pasket/rewrite/adapter.py | Python | mit | 6,903 | [
"VisIt"
] | 0ab3bf2f18273e0eb492e0a9daa795a4e10c907f60aa612f1589c6f39ed6ac6e |
# 10/24/2013 Sebastian Raschka
# BondLab PyMOL plugin
from tkinter import *
from pymol import cmd
import sys, zlib, string
def __init__(self):
"""adds plugin to PyMOL menu"""
self.menuBar.addmenuitem('Plugin', 'command',
'BondLab',
label = 'BondLab',
... | rasbt/BondPack | src/BondLab.py | Python | gpl-3.0 | 3,647 | [
"PyMOL"
] | cff6cbd8266e401290c03588c5252a828068cac6f2169ae36a227f1dd056532d |
# This file is part of Merlin.
# Merlin is the Copyright (C)2008,2009,2010 of Robin K. Hansen, Elliot Rosemarine, Andreas Jacobsen.
# Individual portions may be copyright by individual contributors, and
# are included in this collective work with permission of the copyright
# owners.
# This program is free software; ... | ellonweb/merlin | Hooks/target/attack.py | Python | gpl-2.0 | 3,294 | [
"Galaxy"
] | d4265a7ebac4bad39f79bc3705becb3f37b8dfca9c47a059692b3408b33ebcd3 |
__author__ = 'Mike McCann'
__copyright__ = '2011'
__license__ = 'GPL v3'
__contact__ = 'mccann at mbari.org'
__doc__ = '''
View functions to supoprt the main query web page
@undocumented: __doc__ parser
@status: production
@license: GPL
'''
from tools.colormaps import cmaps
from django.shortcuts import rende... | MBARIMike/stoqs | stoqs/stoqs/views/query.py | Python | gpl-3.0 | 16,730 | [
"NetCDF"
] | 328860092a0a086d9ef2873275476ae60473a28d6430c43e0ce9ea9f1fdcbe4c |
import multiprocessing
import threading
import weakref
from typing import Any, MutableMapping, Optional
try:
from dask.utils import SerializableLock
except ImportError:
# no need to worry about serializing the lock
SerializableLock = threading.Lock
try:
from dask.distributed import Lock as Distributed... | xray/xray | xarray/backends/locks.py | Python | apache-2.0 | 5,443 | [
"NetCDF"
] | fa546ae3e31da522244f65fbd6785e6c6d50b43ec7a219bddb484782798d0a48 |
"""
Copyright (c) 2004-Present Pivotal Software, Inc.
This program and the accompanying materials are made available under
the terms of the under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.... | cjcjameson/gpdb | src/test/tinc/tincrepo/mpp/models/regress/sql_related/regress_sql_test_case/regress_sql_test_case.py | Python | apache-2.0 | 36,052 | [
"ORCA"
] | 5c8b54597ee1cd572839afe10d43cad5d64ffc014e2d41a775f5baf2f130668e |
"""Scraper for Supreme Court of Maine
CourtID: me
Court Short Name: Me.
Author: Brian W. Carver
Date created: June 20, 2014
History:
2014-06-25 (est): Added code for additional date formats.
2014-07-02: Was receiving InsanityException and tweaked date code to get some
missing dates.
2014-12-15: Fix... | Andr3iC/juriscraper | opinions/united_states/state/me.py | Python | bsd-2-clause | 1,766 | [
"Brian"
] | 05c6b34d72cb267676f1f356fd16df2ebc597ca9e258027da32e78b003b9534e |
# ============================================================================
#
# Copyright (C) 2007-2012 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | jeroendierckx/Camelot | camelot/types/__init__.py | Python | gpl-2.0 | 14,092 | [
"VisIt"
] | 542d7dc378ef222865e8fed97d8ac064c28e331288f412e32eb8ab5bd7c0f612 |
import numpy as np
import theano
import theano.tensor as T
import unittest
from numpy.testing import assert_array_equal, assert_array_almost_equal
from nose.tools import assert_true
from smartlearner import views, stopping_criteria, Trainer, tasks
from smartlearner.direction_modifiers import DirectionClipping
from sm... | SMART-Lab/smartlearner | tests/direction_modifiers/test_direction_clipping.py | Python | bsd-3-clause | 3,219 | [
"Gaussian"
] | 1207bcabf3c3c1477e6c2ff12e99ef5b9d80ece4161e4d112f3d9f317098d3c3 |
## -*- coding: utf-8 -*-
#
# Copyright (c) 2018, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""Parser for ADF output files"""
import itertools
import re
import numpy
from cclib.parser import logfi... | berquist/cclib | cclib/parser/adfparser.py | Python | bsd-3-clause | 54,001 | [
"ADF",
"cclib"
] | 1da69ce6c8cd724783daac4c5bd19f7397b979bfda8534d01daa49d9b51ec3d5 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/mcscf/test/test_mcao2mo.py | Python | apache-2.0 | 8,904 | [
"PySCF"
] | 9d30011583f127aa14c95ec25ed6ac2ad3f195c5f8a1fa757386addbde65fc82 |
# coding=utf-8
# Copyright 2022 The Uncertainty Baselines Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ap... | google/uncertainty-baselines | baselines/jft/ood_utils.py | Python | apache-2.0 | 16,317 | [
"Gaussian"
] | 9fa3aefe2bdbb1917446b39a3313d0d78e8cc51caf0b71a1910092976879b314 |
"""
Default Django settings. Override these with settings in the module pointed to
by the DJANGO_SETTINGS_MODULE environment variable.
"""
# This is defined here as a do-nothing function because we can't import
# django.utils.translation -- that module depends on the settings.
def gettext_noop(s):
return s
####... | mjtamlyn/django | django/conf/global_settings.py | Python | bsd-3-clause | 22,000 | [
"VisIt"
] | 9bcfaba823378d6a68ce02c0e376dcf2146c60553f0a1bbad97e11e1d96b2549 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import migrations, models
class Migration(migrations.Migration):
dependencies = [
('visit', '0098_auto_20150922_1852'),
]
operations = [
migrations.AddField(
model_name='student',
name... | koebbe/homeworks | visit/migrations/0099_auto_20160120_2205.py | Python | mit | 1,256 | [
"VisIt"
] | 6e28cdda4075f48e0ef6628840eedfb17c96c1a999d80cf3b56f799cb31f1ce8 |
# -*- coding: utf-8 -*-
from contextlib import contextmanager
import os
import rtree
import numpy as np
import netCDF4 as nc4
from django.conf import settings
from pyaxiom.netcdf import EnhancedDataset, EnhancedMFDataset
from wms.utils import find_appropriate_time
from wms.models import VirtualLayer, Layer, Style
f... | sci-wms/sci-wms | wms/models/datasets/netcdf.py | Python | gpl-3.0 | 10,531 | [
"NetCDF"
] | 30e5e60e412d4b4a6d5525504b754f9035387de97cce132e7125742625cee896 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | anderspitman/scikit-bio | skbio/stats/distance/_bioenv.py | Python | bsd-3-clause | 9,511 | [
"scikit-bio"
] | a541a82153d1e8b1d34b746e82b6504c4da3ae8c41d9f5f7223267408c1fc155 |
from __future__ import absolute_import
from __future__ import print_function
import matplotlib.pyplot as plt
import autograd.numpy as np
import autograd.numpy.random as npr
import autograd.scipy.stats.multivariate_normal as mvn
import autograd.scipy.stats.norm as norm
import gaussian_process as gp
import autograd.scip... | blutooth/gp-svi | examples/maxsvi.py | Python | mit | 4,900 | [
"Gaussian"
] | d314e45588bc5ffa1f4dc419760dad54887f47ab13a1bd87534ce35f1d309c94 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module defines the events signaled by abinit during the execution. It also
provides a parser to extract these events form the main output file and the log file.
"""
from __future__ import unicode_litera... | sonium0/pymatgen | pymatgen/io/abinitio/events.py | Python | mit | 14,177 | [
"ABINIT",
"pymatgen"
] | bb3ea63cf34cafac616ac784442e114c1dba73c065f5d52115a0f4729cb10aa8 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/transitions | openlp/core/ui/filerenamedialog.py | Python | gpl-2.0 | 3,607 | [
"Brian"
] | 87a04b7a5b22f7f6864cb388c86166b34a3de601bb520682a528dc41b53ca574 |
# vim: ai ts=4 sts=4 et sw=4 encoding=utf-8
from random import randint
from time import sleep
from django.core.urlresolvers import reverse
from lettuce.django import django_url
from nose.tools import assert_equals
class PageObject(object):
def __init__(self, browser):
self.browser = browser
def visit... | unicefuganda/mics | survey/features/page_objects/base.py | Python | bsd-3-clause | 7,919 | [
"VisIt"
] | f7b05935109bac663ba3d4f20418815f6ea116481aeadc711aefe842f8d0eb1e |
# ################################################################
#
# Active Particles on Curved Spaces (APCS)
#
# Author: Silke Henkes
#
# ICSMB, Department of Physics
# University of Aberdeen
# Author: Rastko Sknepnek
#
# Division of Physics
# School of Engineering, Physics and Math... | sknepneklab/SAMoS | analysis/batch_polar/batch_defects_J1_v0.1.py | Python | gpl-3.0 | 3,265 | [
"VTK"
] | 5f1040d55406a962ebd52d1fa0f20a162c14292ffd739efa83f0bc20de251cfb |
import datetime
from django.db import models, transaction
from django.urls import reverse
from django_countries.fields import CountryField
from workshops.mixins import (
AssignmentMixin,
CreatedUpdatedMixin,
COCAgreementMixin,
DataPrivacyAgreementMixin,
EventLinkMixin,
HostResponsibilitiesMixi... | swcarpentry/amy | amy/extrequests/models.py | Python | mit | 18,595 | [
"VisIt"
] | 53d62f1c42f1f08ed4eb1f56bfaaf775d544a60bd8534d89ab4c66a0b0b4918e |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# rmvgridtrigger - remove trigger from vgrid
# Copyright (C) 2003-2014 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public L... | heromod/migrid | mig/cgi-bin/rmvgridtrigger.py | Python | gpl-2.0 | 1,086 | [
"Brian"
] | 9f6cb9df0db35639aea0572fb71aaf77160d90bfe54579c2d2c61dbb7e5db4b3 |
#
#
# File to generate network for execution on parallel NEURON
# Note this script has only been tested with UCL's cluster!
#
# Author: Padraig Gleeson
#
# This file has been developed as part of the neuroConstruct project
# This work has been funded by the Medical Research Council and the
# Wellco... | pgleeson/TestArea | models/Cerebellum/pythonScripts/GenNetworkParallel.py | Python | gpl-2.0 | 6,381 | [
"MOOSE",
"NEURON"
] | f15bc6d588292730bc189d2249b2b99cf4b38fd7e63d77491f177ee5938bc970 |
#!/usr/bin/python
"""Test of sayAll."""
from macaroon.playback import *
import utils
sequence = MacroSequence()
#sequence.append(WaitForDocLoad())
sequence.append(PauseAction(5000))
sequence.append(utils.StartRecordingAction())
sequence.append(KeyComboAction("KP_Add"))
sequence.append(utils.AssertPresentationActio... | chrys87/orca-beep | test/keystrokes/firefox/say_all_enter_bug.py | Python | lgpl-2.1 | 3,997 | [
"ORCA"
] | c0555a3fd0d61c2753cb2254aa27bdac705a52376b1329e3e9350ba383a8e926 |
# -*- coding: utf-8 -*-
# Author: Eric Larson <larson.eric.d@gmail.com>
#
# License: BSD (3-clause)
from distutils.version import LooseVersion
import gc
import os
import os.path as op
from pathlib import Path
import shutil
import sys
import warnings
import pytest
# For some unknown reason, on Travis-xenial there are s... | olafhauk/mne-python | mne/conftest.py | Python | bsd-3-clause | 20,946 | [
"Mayavi",
"VTK"
] | 8cc631fc04d65e22cc5f70e18ddb60f46313899ef0b216ebcb8d57131b4c1278 |
# -*- coding: utf-8 -*-
from south.utils import datetime_utils as datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding field 'Neuron.neuron_db_id'
db.add_column(u'neuroelectro_neuron'... | lessc0de/neuroelectro_org | neuroelectro/south_migrations/0074_auto__add_field_neuron_neuron_db_id.py | Python | gpl-2.0 | 30,740 | [
"NEURON"
] | 6ddd53a36c5955188be6b2501136453a7d400a024579efc84be59b050e703124 |
__author__ = "Brian O'Neill"
__version__ = '0.2.1'
import doctest
def main__record_history():
"""
# [The *record_history* decorator](id:record_history-decorator)
The `record_history` decorator is a stripped-down version of `log_calls` which
records calls to a decorated function but writes no messages. You can th... | Twangist/log_calls | tests/test_record_history.py | Python | mit | 9,859 | [
"Brian"
] | 2c866034961c7a1aa275b04e0dd6eb175474903632526e0e70e1ecb75c15084e |
import os
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from scipy.interpolate import interp1d
import spectral.io.envi as envi
import tensorflow as tf
from scipy import optimize
switch_excel = 0
switch_envi = 1
switch_dataFrame = 0
switch_sp_choice_envi = 0
switch_mutiBands = 1
#Modified ga... | Vincentyao1995/Globalink2017-UBC | python_lib/dvm/ModifiedGaussianModel.py | Python | mit | 11,055 | [
"Gaussian"
] | 5fd51af03aff74dc95b986bf895dd3af827c4c6af7ed7f53003cf30fff37fbd6 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
This module provides a class to fit ellipses.
"""
import math
from astropy import log
import numpy as np
import numpy.ma as ma
from .harmonics import (first_and_second_harmonic_function,
fit_first_and_second_harmonics)
from .... | astropy/photutils | photutils/isophote/fitter.py | Python | bsd-3-clause | 16,937 | [
"Galaxy"
] | 81c84be739124362e2fe8659a5deb74c1fc5eab78418bcf93b87a30dfdbd9ae6 |
#!/usr/bin/env python
#
# Appcelerator Titanium Module Packager
#
#
import os, sys, glob, string
import zipfile
from datetime import date
cwd = os.path.abspath(os.path.dirname(sys._getframe(0).f_code.co_filename))
os.chdir(cwd)
required_module_keys = ['name','version','moduleid','description','copyright','license','co... | dcarroll/forcemodule | build.py | Python | bsd-3-clause | 5,808 | [
"VisIt"
] | 5a97b417f4798111f251a861d17a3c9f3b7feb330a5dfefd756c0d621863bbf5 |
from tao.tests.support.factories import DataSetFactory, DataSetPropertyFactory, GalaxyModelFactory, GlobalParameterFactory, SimulationFactory, UserFactory, SnapshotFactory, StellarModelFactory, DustModelFactory, BandPassFilterFactory, SurveyPresetFactory
from tao.tests.integration_tests.helper import LiveServerTest
cl... | IntersectAustralia/asvo-tao | web/tao/tests/integration_tests/dataset_tests.py | Python | gpl-3.0 | 2,741 | [
"VisIt"
] | 104680f8383050b51b91708cb5175dbdb91fa6b8019dd531d4b345316ffdfab8 |
#!/usr/bin/python
import http.client
import httplib2
import os
import random
import sys
import time
from apiclient.discovery import build
from apiclient.errors import HttpError
from apiclient.http import MediaFileUpload
from oauth2client.client import flow_from_clientsecrets
from oauth2client.file import Storage
from... | mfwarren/yachtpromo | upload_video.py | Python | mit | 6,730 | [
"VisIt"
] | cbfa3a28ce50f9f1d29db8b235d8496fbe5effdd246bd7df3daca52315b49198 |
# -*- coding: utf-8 -*-
"""
Created on Mon Jun 19 17:36:35 2017
@author: asadm2
"""
### DESCRIPTION
#This script carries out an exposure time check and an "at least 2 filters"
#check
import pandas as pd
import numpy as np
def expfil2(objname,revtxt):
"""
This function carries out an exposure time check an... | MehnaazAsad/ECO_Globular_Clusters | src/data/mods_prelim_checks_2/Exp_fil2.py | Python | mit | 6,614 | [
"Galaxy"
] | 477511148e8bf9ad87267a7065bd2ba6ef95a8e99a1e280101a8134c196049cc |
#!/usr/bin/env python
# Copyright 2014-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/ci/gcisd.py | Python | apache-2.0 | 18,007 | [
"PySCF"
] | 353fe3be47b9749740f338381f651c08517372772bf79729670b1cd630cf0bf5 |
from property import *
import nest
import numpy.random as random
# Neuron parameters
iaf_neuronparams = {'E_L': -70., # Resting membrane potential in mV
'V_th': -50., # Spike threshold in mV
'V_reset': -67., # Reset membrane potential after a spike in ... | research-team/robot-dream | direct_translation/scripts/step_1 (columns+dopa)/parameters.py | Python | mit | 2,916 | [
"NEURON"
] | aee377d7a28bfb9879486f5bf5a46b9396b4cf65b66f95495cbce2d91025a2db |
import os, sys
import yaml
from utils import *
def fetch_genome(reference_name):
"""
Downloads a reference genome and prepares for aligment
"""
from utils import script_dir
genome_list = yaml.load(open(script_dir + "/utils/genomes.yaml","r"))
makedir("genomes")
if reference_name not in ... | AndersenLab/pyPipeline | utils/genomes.py | Python | mit | 1,678 | [
"BWA"
] | ae43d1e4789198505c7f3147fd683d8bbe57668f6e6e45486b7469c8f8b5cfd5 |
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at https://mozilla.org/MPL/2.0/.
""" pytest test configures """
import pytest
import os.path as osp
import numpy as np
import warnings
import sisl
pyt... | zerothi/sisl | sisl/io/tbtrans/tests/test_tbt.py | Python | mpl-2.0 | 19,984 | [
"CRYSTAL"
] | 10efb15d45aa459a1dc50c435d74772007e1f122863b76d5ea9d4c26a27abb85 |
import sys
import numpy as np
from numpy import mean, cov, dot, transpose
from numpy import linalg as LA
import math
from scipy.sparse import csr_matrix
from __builtin__ import str
from copy import deepcopy
import matplotlib.pyplot as plt
from numpy.linalg import inv
#np.random.seed(0)
class Neuron(object):
"""Ne... | RoozbehFarhoodi/McNeuron | McNeuron/Neuron.py | Python | mit | 70,044 | [
"NEURON"
] | 54febba33464ac1fb6645fcfb15c9da762abffb097c0087d96cf72a86e989bb0 |
"""
Generate samples of synthetic data sets.
"""
# Authors: B. Thirion, G. Varoquaux, A. Gramfort, V. Michel, O. Grisel,
# G. Louppe
# License: BSD 3 clause
from itertools import product
import numbers
import numpy as np
from scipy import linalg
from ..preprocessing import LabelBinarizer
from ..utils import... | depet/scikit-learn | sklearn/datasets/samples_generator.py | Python | bsd-3-clause | 50,824 | [
"Gaussian"
] | 9769d5140a5c9d4344e0a9204734b3a4b5720656fefb7699fa7f60eea7f19911 |
""" ProxyRepository class is a front-end to the proxy repository Database
"""
__RCSID__ = "$Id$"
import os
import glob
import time
import urllib
import random
import hashlib
import commands
from DIRAC import gConfig, gLogger, S_OK, S_ERROR
from DIRAC.Core.Base.DB import DB
from DIRAC.Core.Utilities import DErrno
fro... | chaen/DIRAC | FrameworkSystem/DB/ProxyDB.py | Python | gpl-3.0 | 56,234 | [
"DIRAC"
] | 1af1e2dc6abde435dba0a352c62e8c82d58d54ff91a7540451d9b430ad72db7e |
'''
Nacker is a tool to circumvent 802.1x Network Access Control (NAC) on
a wired LAN.
Copyright (C) 2013 Carsten Maartmann-Moe
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of t... | mehulsbhatt/nacker | caravan/icmp.py | Python | gpl-2.0 | 1,202 | [
"MOE"
] | 0e35f069cd8d57f83fa4aa43a0ec1e27d864dee0283e359e9091cc38bff83bbc |
"""Version information for MayaVi2.
"""
# Author: Prabhu Ramachandran <prabhu_r@users.sf.net>
# Copyright (c) 2006, Enthought, Inc.
# License: BSD Style.
from mayavi.version import version as __version__
| dmsurti/mayavi | mayavi/__version__.py | Python | bsd-3-clause | 205 | [
"Mayavi"
] | 11d9ec5bf2dd24a096852c298724fa6f173e8b9d2a9dd5c84a0c71d2d4f37baa |
# -*- coding: utf-8 -*-
# Copyright (C) 2017 by Pedro Mendes, Virginia Tech Intellectual
# Properties, Inc., University of Heidelberg, and University of
# of Connecticut School of Medicine.
# All rights reserved.
# Copyright (C) 2010 - 2016 by Pedro Mendes, Virginia Tech Intellectual
# Properties, Inc., Universit... | jonasfoe/COPASI | copasi/bindings/python/unittests/Test_CCopasiObject.py | Python | artistic-2.0 | 4,243 | [
"COPASI"
] | b16d656e8b0d22d3231f4622dd52165c736b7858794d4b3d7e200fc27040b83e |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4 fileencoding=utf-8
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
... | alejob/mdanalysis | testsuite/MDAnalysisTests/topology/test_dlpoly.py | Python | gpl-2.0 | 3,036 | [
"MDAnalysis"
] | f085d0c3299e13b498a7dc738f8d18ded62ed60ade71aa1e47d9e8e7edc150d4 |
from __future__ import division
from __future__ import print_function
from past.utils import old_div
import sys
sys.path.insert(1, "../../../")
import h2o
from tests import pyunit_utils
from h2o.estimators.gam import H2OGeneralizedAdditiveEstimator
from h2o.grid.grid_search import H2OGridSearch
# In this test, we ch... | h2oai/h2o-3 | h2o-py/tests/testdir_algos/gam/pyunit_PUBDEV_7367_gridsearch_subspaces.py | Python | apache-2.0 | 4,652 | [
"Gaussian"
] | ec57b140239da5be9f1669c800ef9d906c46d74b33c5c5795b462ec8125256dc |
import time
from nxtools import logging, s2tc
from firefly.qt import (
Qt,
QLineEdit,
QTextEdit,
QFontDatabase,
QFont,
QSpinBox,
QCheckBox,
QPushButton,
QColorDialog,
QColor,
)
class FireflyString(QLineEdit):
def __init__(self, parent, **kwargs):
super(FireflyStri... | immstudios/firefly | firefly/widgets/simple.py | Python | gpl-3.0 | 5,969 | [
"Firefly"
] | 244f522980395e5d1c919b33a18ef3f9816662b68d364c8f1b5e703b3338824f |
# coding=utf-8
# Copyright 2021 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | google-research/deep_representation_one_class | util/train.py | Python | apache-2.0 | 27,277 | [
"Gaussian"
] | 373b3c56b027a42fc91c497a9387e6964a8f76e23b36c919dace9461f180595c |
import os
from setuptools import setup
from setuptools import find_packages
version = '0.1'
shortdesc = "Search for bda.plone.shop"
longdesc = open(os.path.join(os.path.dirname(__file__), 'README.rst')).read()
longdesc += open(os.path.join(os.path.dirname(__file__), 'CHANGES.rst')).read()
#longdesc += open(os.path.jo... | espenmn/bda.plone.shopsearch | setup.py | Python | bsd-3-clause | 1,314 | [
"MOE"
] | 02876f74f27baca7dcf50e894ea3d0fb8d168d84fa7fa4bdf87e2d7040389cac |
########################################################################
# $HeadURL $
# File: FTSAgent.py
# Author: Krzysztof.Ciba@NOSPAMgmail.com
# Date: 2013/05/31 10:00:13
########################################################################
""" :mod: FTSAgent
==============
.. module: FTSAgent
:syno... | rajanandakumar/DIRAC | DataManagementSystem/Agent/FTSAgent.py | Python | gpl-3.0 | 46,311 | [
"DIRAC"
] | 9a114c49a4f022fd0c116a6a242d9b6c22214578e6d82e7859c931d06fa6efb9 |
import logging
from cStringIO import StringIO
from math import exp
from lxml import etree
from path import path # NOTE (THK): Only used for detecting presence of syllabus
import requests
from datetime import datetime
import dateutil.parser
from xmodule.modulestore import Location
from xmodule.seq_module import Sequen... | praveen-pal/edx-platform | common/lib/xmodule/xmodule/course_module.py | Python | agpl-3.0 | 45,434 | [
"VisIt"
] | 179f86716af7a219ee4eec2bc3e1516592279e0a83b442d8ee961aca373ad7a2 |
# Author: Travis Oliphant 2001
# Author: Nathan Woods 2013 (nquad &c)
import sys
import warnings
from functools import partial
from . import _quadpack
import numpy
from numpy import Inf
__all__ = ['quad', 'dblquad', 'tplquad', 'nquad', 'quad_explain',
'IntegrationWarning']
error = _quadpack.error
class ... | nmayorov/scipy | scipy/integrate/quadpack.py | Python | bsd-3-clause | 37,367 | [
"Gaussian"
] | 795ec4de7f225c1c5a16d8d418d626e60f44c9abc054d2d02e4b7edab050c315 |
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use ... | Jc2k/libcloudcore | libcloudcore/serializers/xml.py | Python | apache-2.0 | 6,027 | [
"VisIt"
] | dab0aad7559efcb1f7cd417d48155dad80f93d7cd16214c933d751c2ce7f61e2 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
Utilities for generating nicer plots.
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__mai... | sonium0/pymatgen | pymatgen/util/plotting_utils.py | Python | mit | 5,230 | [
"pymatgen"
] | ca72b01ac341c78bcb2c6fca61e55afe52e98e6fc6b075e9c725af869a00fb80 |
# -*- coding: utf-8 -*-
#
# test_stdp_triplet_synapse.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of t... | hakonsbm/nest-simulator | pynest/nest/tests/test_stdp_triplet_synapse.py | Python | gpl-2.0 | 12,696 | [
"NEURON"
] | 09386edcb20b723f96d677f2eadff7e4a0299755b4a2e8b42523ba8d18ca83e4 |
# -*- coding: utf-8 -*-
"""
"Sandbox" module for exploring API useful for digital labbooks.
Examples
--------
>>> from chempy.units import to_unitless, default_units as u
>>> s1 = Solution(0.1*u.dm3, {'CH3OH': 0.1 * u.molar})
>>> s2 = Solution(0.3*u.dm3, {'CH3OH': 0.4 * u.molar, 'Na+': 2e-3*u.molar, 'Cl-': 2e-3*u.mola... | bjodah/aqchem | chempy/_solution.py | Python | bsd-2-clause | 5,994 | [
"ChemPy"
] | e30069c3acd106c5013fc6b2e9c103385c34cb420d8f9fab5dde1782a1d83f94 |
# This file is part of xrayutilities.
#
# xrayutilities is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed... | dkriegner/xrayutilities | tests/test_materials_findsym.py | Python | gpl-2.0 | 1,502 | [
"CRYSTAL"
] | 1c608e5f3cb492a94b299d866cbfa99fb3a4826447912685180c66aab3211ce4 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | openlp/plugins/images/lib/__init__.py | Python | gpl-2.0 | 2,176 | [
"Brian"
] | 7c39d93a464abc3dffc5beae34e7765b30139e9a048be95cefa62fdc51b56ddb |
#removes first 2 lines from all outputfiles
import operator
import os
from galaxy import datatypes
def exec_after_process(app, inp_data, out_data, param_dict,tool, stdout, stderr):
for data_count in range(len(out_data)):
output_filename = param_dict.get( 'out_file'+str(data_count+1), None )
if ou... | jmchilton/galaxy-central | tools/emboss/phylipnew/remove_first_2_lines.py | Python | mit | 628 | [
"Galaxy"
] | 6a5e531e3d3fb21eb8183232b746947882816f10f7c0280af9b8fd9734613f11 |
"""Definitions of Celery tasks in Askbot
in this module there are two types of functions:
* those wrapped with a @task decorator and a ``_celery_task`` suffix - celery tasks
* those with the same base name, but without the decorator and the name suffix
the actual work units run by the task
Celery tasks are special ... | simalytics/askbot-devel | askbot/tasks.py | Python | gpl-3.0 | 13,501 | [
"VisIt"
] | 7fa2ae527fbb29971564a3a7fa8984343d96e80c56ba2053db599d662e3f1c2f |
# Copyright 2010 Google Inc.
#
# Permission is hereby granted, free of charge, to any person obtaining a
# copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitation the rights to use, copy, modify, merge, publish, dis-
# trib... | mattcaldwell/boto | boto/gs/key.py | Python | mit | 40,236 | [
"VisIt"
] | 9aabf45e1d30cb7246d56c35af3e6648a0c95ea111971e4fc0d65140dc59aafe |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS that utilize the
progress page.
"""
from __future__ import absolute_import
from six.moves import range
from contextlib import contextmanager
import ddt
from ...fixtures.course import CourseFixture, XBlockFixtureDesc
from ...pages.common.logout import LogoutPage... | jolyonb/edx-platform | common/test/acceptance/tests/lms/test_progress_page.py | Python | agpl-3.0 | 16,866 | [
"VisIt"
] | 5406348640bc2e33ebc63e934ac120cef20291c2247aebf74f3fa853fd579e14 |
# Copyright 2010 The Closure Library Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | dmincu/IOC | new_php/closure-library/closure/bin/build/jscompiler.py | Python | mit | 4,237 | [
"VisIt"
] | abc85f59bd33324283bae70d8d193a5d73e2b641a5d62a89b5fa99e175cb9580 |
# (c) 2012-2014, Michael DeHaan <michael.dehaan@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) an... | j0057/ansible-1 | lib/ansible/utils/__init__.py | Python | gpl-3.0 | 60,463 | [
"Galaxy",
"VisIt"
] | 503887e7175c2a04a3a5ea9c27e972f08dbf87354df7492215395bd56f44134f |
import os, shutil
class calculate_stability(object):
def __init__(self):
self.new_sequences_list = []
self.split_new_seq_list = []
self.num_splits = 4
self.structure = "2YP7"
self.bash_file_name = "bash_file.sh"
if self.structure == "1HA0":
self.structur... | blab/stability | augur/mutator/mutate_everything_2YP7/mutator_stability.py | Python | agpl-3.0 | 5,914 | [
"FoldX"
] | 5e7a32fd50664c0a204ce57f8d672885f0e946025a1caa9a362255431309ddb7 |
import binascii
import pytest
import flextls
from flextls.connection import DTLSv10Connection
from flextls.exception import NotEnoughData
from flextls.protocol.handshake import DTLSv10Handshake
from flextls.protocol.handshake import ServerCertificate
from flextls.protocol.record import Record, DTLSv10Record
class T... | DinoTools/python-flextls | tests/test_dtls_1_0.py | Python | lgpl-3.0 | 15,918 | [
"FEFF"
] | 22b646270600da7414ebfc9e8ad8076c1ce9f6b1a4b73435a14caaf0bc00bc02 |
from __future__ import division, print_function
import numpy as np
import matplotlib.pyplot as plt
import glob
import astropy.io.fits as pyfits
import scipy.ndimage as nd
from astropy.modeling import models, fitting
plt.ion()
fnames = glob.glob('/Users/mireland/data/veloce/Feb28/QE*fits')
focus = [int(f[-8:-5]) for f ... | mikeireland/veloce | utils/fwhm_computation.py | Python | gpl-3.0 | 4,129 | [
"Gaussian"
] | a7c7e8bbfbed471c21ed96731a0f41644b7759e7b6fa3ba34dd001c757689a7b |
"""
cache v0.01
simple object serializing cache wrapper and client side partitioner for redis
Copyright 2012 Brian Monkaba
This file is part of ga-bitbot.
ga-bitbot is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Softw... | khoffrath/ga-bitbot | libs/cache.py | Python | gpl-3.0 | 5,642 | [
"Brian"
] | 72fc5540a9003a44c7c2e6bac1ac4f9d0651d5f34f2e179842bc18165424f119 |
import unittest
import os
from io import StringIO
from molutils.util.molecule import Molecule
from molutils.util.periodic_table import lookup_element_by_symbol
from molutils.util.job_formatters.psi4 import Psi4JobFormatter
PATH_TO_PSI4 = "/opt/psi4/bin/psi4.run"
DIMER_XYZ_FILE = (
"21\n"
"molecule_title\n"
... | jasonrig/molecule-utils | tests/molecule_tests.py | Python | mit | 10,132 | [
"Psi4"
] | b7e2fc5e470cc5a3427359bcb7310f6fb93b53d888530d78d3d382095dc0cb5d |
import pickle
from io import BytesIO
import numpy as np
import scipy.sparse
import warnings
from sklearn.datasets import load_digits
from sklearn.cross_validation import cross_val_score
from sklearn.externals.six.moves import zip
from sklearn.utils.testing import assert_almost_equal
from sklearn.utils.testing import... | loli/sklearn-ensembletrees | sklearn/tests/test_naive_bayes.py | Python | bsd-3-clause | 11,994 | [
"Gaussian"
] | a6b80bfbd46e30978a92cbdcb99da4e5a7a814ec1714286f60c69b04d771cad0 |
from ase import Atom
from ase.units import Hartree
from gpaw import GPAW, FermiDirac
from gpaw.cluster import Cluster
from gpaw.test import equal
h =.3
box = 4.
energy_tolerance = 0.0004
s = Cluster([Atom('Zn')])
s.minimal_box(box, h=h)
E = {}
E_U = {}
for spin in [0, 1]:
c = GPAW(h=h, spinpol=spin,
... | robwarm/gpaw-symm | gpaw/test/Hubbard_U_Zn.py | Python | gpl-3.0 | 670 | [
"ASE",
"GPAW"
] | 975c7053f5cacf1b49948d2ad74bc42ad3a2f4a4a6cd1d88e85943e0ca29ba57 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
Created on Jun 9, 2012
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ = "Sh... | migueldiascosta/pymatgen | pymatgen/matproj/tests/test_rest.py | Python | mit | 11,617 | [
"pymatgen"
] | 69759040a89136c72e079a8a65b72c63a7a8e3afe67fe233487505729ab7231e |
# net.py
# A dead-simple neural network
#
# Potential improvements:
# - Support topologies other than 1 hidden layer
# - Add other training strategies (adaptive learning rate, momentum)
# - Add more error checking
import numpy as np
class Net(object):
"""
Neural network class with:
- 1 hidden layer
- ... | gregdeon/simple-ann | src/net.py | Python | mit | 9,516 | [
"NEURON"
] | 4ba6373dbd302adb7c20e68d14eb81bf626d0911c692f660e4889743478ccda3 |
from pyrocopy import pyrocopy
from setuptools import setup, find_packages
setup(
name='pyrocopy',
version=pyrocopy.__version_str__,
description='A suite of robust file copying utilities for Python.',
long_description="""pyrocopy is a suite of advanced file utility functions for efficiently copying all o... | caskater4/pyrocopy | setup.py | Python | mit | 2,047 | [
"VisIt"
] | 61c7c5c6d678f69439f971d063540de2e0ee87b8c992ba325f683ef41061450a |
"""Get useful information from live Python objects.
This module encapsulates the interface provided by the internal special
attributes (co_*, im_*, tb_*, etc.) in a friendlier fashion.
It also provides some help for examining source code and class layout.
Here are some of the useful functions provided by this module:... | PennartLoettring/Poettrix | rootfs/usr/lib/python3.4/inspect.py | Python | gpl-2.0 | 103,929 | [
"VisIt"
] | a65505f17a72f8d07f85a68e7a90f2ba9962b77670593f8f7b22ff4e2fdcc05b |
# Copyright 2012-2014 Brian May
#
# This file is part of python-tldap.
#
# python-tldap is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.... | Karaage-Cluster/python-tldap | tldap/__init__.py | Python | gpl-3.0 | 1,024 | [
"Brian"
] | 38e84da53d0814ad8ee09c92c83623bd3279a1f9db3972e19291043fb72b376c |
# data modules
import glob
import sys
import astropy.io.fits as fits
import os
from os.path import join
import pickle
import time
# numerical modules
import numpy as n
from scipy.interpolate import interp1d
from scipy.misc import derivative
from scipy.optimize import minimize
from scipy.optimize import curve_fit
# plo... | JohanComparat/nbody-npt-functions | python/lib_functions_1pt.py | Python | cc0-1.0 | 51,018 | [
"TINKER"
] | d7f0a89e14e246dbce392cf64db12019bdc6ad95f2295145611043a39802a431 |
"""Math commands"""
from .sr850_driver import SR850Driver
class SR850Math(SR850Driver):
"""Math commands"""
def smth(self, width):
"""Smooth the data trace of the active display.
This command may take some time to complete. If a scan is in progress,
this method will pause the scan.
... | PALab/PLACE | place/plugins/sr850_amp/sr850_math.py | Python | lgpl-3.0 | 4,769 | [
"Gaussian"
] | 0135e1f4370a15be1ff59c2b814db65973ed179cb5d9e19c648064bcacacb480 |
from boltons.iterutils import remap
from mongoengine.queryset.visitor import Q
from mpcontribs.api import enter
from mpcontribs.api.projects.document import Projects
from mpcontribs.api.contributions.document import Contributions
def visit(path, key, value):
if isinstance(value, dict) and "display" in value:
... | materialsproject/MPContribs | mpcontribs-api/maintenance.py | Python | mit | 1,365 | [
"VisIt"
] | fa1974021f35e7e0ba997b69f9a0f00fb86c63f5a5d32d67a7dc3de718b3f161 |
'''
Created on Feb 23, 2016
@author: jason
'''
import numpy as np
from sklearntools.sklearntools import StagedEstimator, MaskedEstimator,\
ColumnSubsetTransformer, NonNullSubsetFitter, safe_assign_column
from sklearn.linear_model.base import LinearRegression
from sklearn.linear_model.logistic import LogisticRegres... | jcrudy/sklearntools | sklearntools/test/test_sklearntools.py | Python | bsd-3-clause | 17,863 | [
"Gaussian"
] | c2a7cb3d16b8d66fe17bd0aded9ed044a4796fc8a372a63b09d1ddd9c023fc44 |
import numpy as np
import scipy.stats as ss
import scipy.special as sp
from .family import Family
from .flat import Flat
from .normal import Normal
from .gas_recursions import gas_recursion_t_orderone, gas_recursion_t_ordertwo
from .gas_recursions import gasx_recursion_t_orderone, gasx_recursion_t_ordertwo
from .gas_... | RJT1990/pyflux | pyflux/families/t.py | Python | bsd-3-clause | 13,051 | [
"Gaussian"
] | 2a4dac965c2796e83fb0ec4b190521b68cc904310d6c7db3f55bb275796af23d |
import cv2
import numpy as np
import math
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import axes3d
from matplotlib import cm
from matplotlib.ticker import LinearLocator, FormatStrFormatter
from mpl_toolkits.mplot3d import Axes3D
from methods_exist.trackers.kcf_tracker.RectTools import *
class KCFTrack... | hehewa/pytorchStudy | methods_exist/trackers/kcf_tracker/KCFTracker.py | Python | apache-2.0 | 8,593 | [
"Gaussian"
] | ce18e9c26774c8701389ec59443d1b37866ebe7cb96d3b86374452388b368e31 |
import os as _os
_on_rtd = _os.environ.get('READTHEDOCS', None) == 'True'
if not _on_rtd:
import numpy as _np
def gaussian(x, mu, sigma):
"""
Gaussian function of the form :math:`\\frac{1}{\\sqrt{2 \\pi}\\sigma} e^{-\\frac{(x-\\mu)^2}{2\\sigma^2}}`.
.. versionadded:: 1.5
Parameters
---------... | joelfrederico/SciSalt | scisalt/numpy/functions.py | Python | mit | 581 | [
"Gaussian"
] | 33c1f8e4a7625edb151d1f0b444d7ff29c70c43ad2b0ffdf3564f95bc4954a27 |
# coding: utf-8
#!/usr/bin/env python
from __future__ import division, unicode_literals
"""
#TODO: Write module doc.
"""
__author__ = 'Shyue Ping Ong'
__copyright__ = 'Copyright 2013, The Materials Virtual Lab'
__version__ = '0.1'
__maintainer__ = 'Shyue Ping Ong'
__email__ = 'ongsp@ucsd.edu'
__date__ = '8/1/15'
i... | rousseab/pymatgen | pymatgen/io/smartio.py | Python | mit | 487 | [
"pymatgen"
] | 8bba6156392fa05923c0e2905928c1129afcb05d77ee9c39dcce513a72607003 |
#!/usr/bin/env python
# (C) Copyright IBM Corporation 2004
# All Rights Reserved.
#
# Permission is hereby granted, free of charge, to any person obtaining a
# copy of this software and associated documentation files (the "Software"),
# to deal in the Software without restriction, including without limitation
# on the... | gzorin/RSXGL | extsrc/mesa/src/mapi/glapi/gen/gl_SPARC_asm.py | Python | bsd-2-clause | 9,007 | [
"Brian"
] | 2a155d6dd7cd9068356b7e2fa1e3900cb3698cb34d20cfd59acbfc6f26d2aa62 |
# -*- coding: utf-8 -*-
from shop.models.cartmodel import Cart
from django.contrib.auth.models import AnonymousUser
def get_cart_from_database(request):
database_cart = Cart.objects.filter(user=request.user)
if database_cart:
database_cart = database_cart[0]
else:
database_cart = None
r... | creimers/django-shop | shop/util/cart.py | Python | bsd-3-clause | 3,099 | [
"VisIt"
] | be8889b2aec0910c984d13b58cd6a8ce5d5c1d2453fb1849e9439217159480b6 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# hashid.py - Software to identify the different types of hashes
# Copyright (C) 2013-2015 by c0re <c0re@psypanda.org>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Fre... | Miskerest/IDCrash | hashID/hashid.py | Python | mit | 47,274 | [
"ASE"
] | f5d39fdda0fb3335470e38da7860966d487376758c989ab1337c004388fa1141 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
r"""
This module contains classes useful for analyzing ferroelectric candidates.
The Polarization class can recover the spontaneous polarization using
multiple calculations along a nonpolar to polar ferroelectric distortion.
T... | vorwerkc/pymatgen | pymatgen/analysis/ferroelectricity/polarization.py | Python | mit | 19,810 | [
"CRYSTAL",
"VASP",
"pymatgen"
] | 3e0ae6834e7952597d7fe6308ba10689f85f170b2293685a4edf9a1cd83284df |
#http://fileinfo.com/filetypes/raster_image
IMAGE_EXT = """
.001 Fax File
.2BP Pocket PC Bitmap Image File
.360 360desktop Panorama File
.411 Mavica Thumbnail Image
.73I TI-73 Screenshot File
.8CA TI-84 Plus C Image Var Format
.8CI TI-84 Plus C Pic Vars Format
.8PBS Adobe Photoshop Macintosh File
.8XI TI-83... | Mioced/mm-searcher | src/image_extentions.py | Python | mit | 13,857 | [
"Amber"
] | 147da56f3918edd53b8a5e3a03f7dfdbd51de28a4c410c8c6f44b5d8f5a54f74 |
#!/usr/bin/env python
from sys import exit
from random import randint
class Scene(object):
def enter(self):
print "This scene is not yet configured. Subclass it and implement enter()."
exit(1)
class Engine(object):
def __init__(self, scene_map):
self.scene_map = scene_map
def play(self):
current_scen... | moralesjason/learnpythonthehardway | ex43basicobjectorientedanalysisanddesign.py | Python | gpl-3.0 | 7,718 | [
"BLAST"
] | 7be74f4cb8895a2c564ed8e6d8b96c67aacf479bce9bbd108c538f6d253142eb |
# -----------------------------------------------------------------------------
# User configuration
# -----------------------------------------------------------------------------
outputDir = '/Users/seb/Desktop/Geometry-can/'
inputFile = '/Users/seb/Downloads/ParaViewData-3.98.1/Data/can.ex2'
# --------------------... | Kitware/tonic-data-generator | scripts/paraview/samples/Geometry-can.py | Python | bsd-3-clause | 1,859 | [
"ParaView"
] | 1a255f4522d1867d6c7c8fee50a4925e51ee2b0b2ccae8f6c80ae03f4df851aa |
"""
test_SpikingTransmission.py
This file is part of ANNarchy.
Copyright (C) 2020 Helge Uelo Dinkelbach <helge.dinkelbach@gmail.com>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Found... | vitay/ANNarchy | tests/Unittests/test_SpikingTransmission.py | Python | gpl-2.0 | 7,599 | [
"NEURON"
] | 2fa6d43e6d4732b2da09ab14858e87ea388b39b780cd8f957e42706ee1128ff8 |
#!/usr/bin/env python
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""Nodes for PPAPI IDL AST"""
#
# IDL Node
#
# IDL Node defines the IDLAttribute and IDLNode objects which are constructed
# by th... | plxaye/chromium | src/ppapi/generators/idl_node.py | Python | apache-2.0 | 14,337 | [
"VisIt"
] | b4e8faa47e7fad265471756f630de2acc3de227652d66752aa3aad7e675bf42b |
from galaxy.test.base.twilltestcase import TwillTestCase
#from twilltestcase import TwillTestCase
class EncodeTests(TwillTestCase):
def test_00_first(self): # will run first due to its name
"""3B_GetEncodeData: Clearing history"""
self.clear_history()
def test_10_Encode_Data(self):
... | jmchilton/galaxy-central | galaxy/test/functional/test_3B_GetEncodeData.py | Python | mit | 1,185 | [
"Galaxy"
] | 2c3c256f58ceabe102717818b92e529d033f2736b17ca3a6ecb3e6f5885859a3 |
###########################################################################
# TaskToKmz
# Copyright 2013 by Tonino Tarsi <tony.tarsi@gmail.com>
#
# Please refer to the LICENSE file for conditions
# Visit http://www.vololiberomontecucco.it
#
######################################################################... | ToninoTarsi/TaskToKmz | TaskToKmz.py | Python | gpl-3.0 | 7,882 | [
"VisIt"
] | 788598b6c7df8bda93d72a669423c38bf20c43300ded6efff3711274a0310aa7 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import os
from pymatgen.core.structure import Structure
from pymatgen.io.atat import Mcsqs
from pymatgen.util.testing import PymatgenTest
from pymatgen.util.testing import PymatgenTest
test_dir = os.path.joi... | gmatteo/pymatgen | pymatgen/io/tests/test_atat.py | Python | mit | 3,797 | [
"pymatgen"
] | 81f49159a38787263d7cc3716435478065324e4e18c6cab6a19c0af046d759d8 |
import numpy as np
from pyiid.experiments.elasticscatter.kernels.master_kernel import get_rw, \
get_chi_sq, get_grad_rw, \
get_grad_chi_sq
from ase.calculators.calculator import Calculator
__author__ = 'christopher'
def wrap_rw(gcalc, gobs):
"""
Generate the Rw value
Parameters
-----------
... | CJ-Wright/pyIID | pyiid/calc/__init__.py | Python | bsd-3-clause | 4,468 | [
"ASE"
] | aea190d75394e263cb70c7fe3fbc039aa4500802e32a13987c00a10fec346ab0 |
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