scripts/FigureS1_CTL_OFF.m

%% PD OFF and Control: Time-Frequnecy analysis

%% ####################### Cue-locled ON-OFF #############################
clear ; 
clc;
close all;
savedir='D:\Project_EEG_CC\CC_Results_step2_AllChannels_NEW\'; 

cd(savedir);

load('D:\Project_EEG_CC\mFiles\ONOFF.mat','ONOFF')
load('D:\Project_EEG_CC\mFiles\BV_Chanlocs_60.mat');

PDsx=[801:811,813:829];       

CTLsx=[8010,8070,8060,890:914];  

BigN=size(ONOFF,1)./2;

% load PD OFF and ON data
row=1;
for mi=1:size(ONOFF,1)
    
    disp([num2str(ONOFF(mi,1)),'_Session_',num2str(ONOFF(mi,2)),'_PDDys_CC_ALL_GOODS.mat']);
    
    if ONOFF(mi,1)==824 && ONOFF(mi,2)==2  % Bad EEG
        POWER=NaN(size_power);
    else
        load([savedir,num2str(ONOFF(mi,1)),'_Session_',num2str(ONOFF(mi,2)),'_PDDys_CC_ALL_GOODS.mat']);
       size_power=size(POWER); 
    end
    
    if ONOFF(mi,3)==1 % ON
        ON.ID(floor(row))=ONOFF(mi,1);
        ON.Session(floor(row))=ONOFF(mi,2);
        ON.POWER{1}(floor(row),:,:,:,:,:)=POWER;
               
    elseif ONOFF(mi,3)==0 % OFF
        OFF.ID(floor(row))=ONOFF(mi,1);
        OFF.Session(floor(row))=ONOFF(mi,2);
        OFF.POWER{1}(floor(row),:,:,:,:,:)=POWER;
   end
    row=row+.5;
    clear  POWER;
    
end
% load control data
row=1;
for CTLi=CTLsx;
    
    disp([num2str(CTLi),'_Session_1_PDDys_CC_ALL_GOODS.mat']);
    
    if ONOFF(mi,1)==911 && ONOFF(mi,2)==1  % Bad EEG
        POWER=NaN(size_power);
    else
        load([savedir,num2str(CTLi),'_Session_1_PDDys_CC_ALL_GOODS.mat']);
    end
    
    CTL.ID(floor(row))=CTLi;
    CTL.Session(floor(row))=1;
    CTL.POWER{1}(floor(row),:,:,:,:,:)=POWER;
    row=row+1;
    clear POWER ;
end

CtlN=row-1;

%% ################## Cue-Locked Cong and Incong: CTL - OFF ######################################
paneli = 1; % Cue
tx2disp=-500:2:1000;
frex=logspace(.01,1.7,50);
Bidx=1;   % 1 is pre-cue baseline
CHANI=21;  % channel 21 Cz 

%%%%%%%%%%%%%%%%%%%%%%%%% %%% figure for PD OFF/ON - Control

OFF_Conf2 = OFF.POWER{Bidx}(:,CHANI,:,:,2,paneli);     OFF_Conf1 = OFF.POWER{Bidx}(:,CHANI,:,:,1,paneli); 
CTL_Conf2 = CTL.POWER{Bidx}(:,CHANI,:,:,2,paneli);     CTL_Conf1 =  CTL.POWER{Bidx}(:,CHANI,:,:,1,paneli); 

OFF_Conf21 =    squeeze( nanmean(OFF_Conf2,1)) - squeeze( nanmean(OFF_Conf1,1)); 
CTL_Conf21 =  squeeze( nanmean(CTL_Conf2,1)) -  squeeze( nanmean(CTL_Conf1,1));
   
subplot(411);
imagesc(tx2disp,[], CTL_Conf21 - OFF_Conf21); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D(squeeze(CTL_Conf2)- squeeze(CTL_Conf1), squeeze(OFF_Conf2)- squeeze(OFF_Conf1), 'between') ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P ;
rectangle('Position',[400 18 100 9],'EdgeColor','b','LineWidth', 3)
plot([0 0],[1 50],'k:')
set(gca,'clim',[-1 1],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));hold off; title('Cue-locked CTL-OFF (Incong-Cong)');


%% ################## Response Locked Correct and Error: CTL - OFF ######################################
clearvars -except OFF ON CTL
paneli = 2;
tx2disp=-500:2:1000;
frex=logspace(.01,1.7,50);
Bidx=1;   % 1 is pre-cue baseline
CHANI=21;  % channel 21 Cz 

%%%%%%%%%%%%%%%%%%%%%%%%% %%% figure for PD OFF/ON - Control

OFF_Conf2 = OFF.POWER{Bidx}(:,CHANI,:,:,2,paneli);     OFF_Conf1 = OFF.POWER{Bidx}(:,CHANI,:,:,1,paneli); 
CTL_Conf2 = CTL.POWER{Bidx}(:,CHANI,:,:,2,paneli);     CTL_Conf1 = CTL.POWER{Bidx}(:,CHANI,:,:,1,paneli); 

OFF_Conf21 =    squeeze( nanmean(OFF_Conf2,1)) - squeeze( nanmean(OFF_Conf1,1)); 
CTL_Conf21 =    squeeze( nanmean(CTL_Conf2,1)) - squeeze( nanmean(CTL_Conf1,1));
   
subplot(412);
imagesc(tx2disp,[], CTL_Conf21 - OFF_Conf21); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D(squeeze(CTL_Conf2)- squeeze(CTL_Conf1), squeeze(OFF_Conf2)- squeeze(OFF_Conf1), 'between') ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P ;
rectangle('Position',[-200 18 250 9],'EdgeColor','b','LineWidth', 3);
plot([0 0],[1 50],'k:')
set(gca,'clim',[-1 1],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));hold off; title('Resp-locked  CTL-OFF (Error-Correct)');

%% CORRECT ONLT: Resp locked: Cong and Incong
clear;clc;
savedir='D:\Project_EEG_CC\CC_Results_step2_CORRECT_NEW\'; 
cd(savedir);
load('D:\Project_EEG_CC\mFiles\ONOFF.mat','ONOFF')
load('D:\Project_EEG_CC\mFiles\BV_Chanlocs_60.mat');

PDsx=[801:811,813:829];        
CTLsx=[8010,8070,8060,890:914];  
BigN=size(ONOFF,1)./2;

% load PD OFF and ON data
row=1;
for mi=1:size(ONOFF,1)

     disp([num2str(ONOFF(mi,1)),'_Session_',num2str(ONOFF(mi,2)),'_PDDys_CC_ALL_GOODS.mat']);
    
    if ONOFF(mi,1)==824 && ONOFF(mi,2)==2  % Bad EEG
        POWER=NaN(size_power);
    else
        load([savedir,num2str(ONOFF(mi,1)),'_Session_',num2str(ONOFF(mi,2)),'_PDDys_CC_ALL_GOODS.mat']);
        size_power=size(POWER); 
    end
            
    if ONOFF(mi,3)==1 % ON
        ON.ID(floor(row))=ONOFF(mi,1);
        ON.Session(floor(row))=ONOFF(mi,2);
        ON.POWER{1}(floor(row),:,:,:,:,:)=POWER;
               
    elseif ONOFF(mi,3)==0 % OFF
        OFF.ID(floor(row))=ONOFF(mi,1);
        OFF.Session(floor(row))=ONOFF(mi,2);
        OFF.POWER{1}(floor(row),:,:,:,:,:)=POWER;
    end
    row=row+.5;
    clear Model_Output POWER ;
    
end
% load control data
row=1;
for CTLi=CTLsx;
    
    disp([num2str(CTLi),'_Session_1_PDDys_CC_ALL_GOODS.mat']);
    
    if ONOFF(mi,1)==911 && ONOFF(mi,2)==1  % Bad EEG
        ERPs=NaN(size_erp);POWER=NaN(size_power); POWER_REST=NaN(size_power); Baselines=NaN(60,50,2);
    else
        load([savedir,num2str(CTLi),'_Session_1_PDDys_CC_ALL_GOODS.mat']);
    end
    
    CTL.ID(floor(row))=CTLi;
    CTL.Session(floor(row))=1;
    CTL.POWER{1}(floor(row),:,:,:,:,:)=POWER;
    row=row+1;
    clear Model_Output POWER ;
end
CtlN=row-1;

tx2disp=-500:2:1000;
frex=logspace(.01,1.7,50);
CHANS=(1:60);
Bidx=1;   % 1 is pre-cue baseline
CHANI=21;  % channel Cz 

%%%%%%%%%%%%%%%%%%%%%%%%% %%% figure for PD ON - Control

CTL_Conf2 = CTL.POWER{Bidx}(:,CHANI,:,:,2);     CTL_Conf1 = CTL.POWER{Bidx}(:,CHANI,:,:,1); 
OFF_Conf2 = OFF.POWER{Bidx}(:,CHANI,:,:,2);     OFF_Conf1 = OFF.POWER{Bidx}(:,CHANI,:,:,1); 

CTL_Conf21 =     squeeze( nanmean(CTL_Conf2,1)) -  squeeze( nanmean(CTL_Conf1,1)); 
PD_OFF_Conf21 =  squeeze( nanmean(OFF_Conf2,1)) -  squeeze( nanmean(OFF_Conf1,1));

subplot(413);
imagesc(tx2disp,[], CTL_Conf21 - PD_OFF_Conf21); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D(squeeze(OFF_Conf2)- squeeze(OFF_Conf1), squeeze(CTL_Conf2)- squeeze(CTL_Conf1), 'between') ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P;
plot([0 0],[1 50],'k:')
% plot ROI in Green Color
rectangle('Position',[-200 18 250 9],'EdgeColor','b','LineWidth', 3)
set(gca,'clim',[-1 1],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));hold off; title('Resp-locked CTL-OFF (Incong-Cong)'); 

%% ##################   Post Error- Post Correct: CTL-OFF  ###################################################
clear; clc;
%%%% get the data
savedir='D:\Project_EEG_CC\CC_Project_PostError\PostError_step2_Data_NEW\';   % Main Data are here
cd(savedir);
load('D:\Project_EEG_CC\CC_Project_PostError\ONOFF.mat','ONOFF')
load('D:\Project_EEG_CC\CC_Project_PostError\BV_Chanlocs_60.mat');

PDsx=[801:811,813:829];        
CTLsx=[8010,8070,8060,890:914];
BigN=size(ONOFF,1)./2;
% load PD OFF and ON data
row=1;
for mi=1:size(ONOFF,1)

    disp([num2str(ONOFF(mi,1)),'_Session_',num2str(ONOFF(mi,2)),'_PDDys_CC_ALL_GOODS.mat']);
    
    if ONOFF(mi,1)==824 && ONOFF(mi,2)==2  % Bad EEG
        POWER=NaN(size_power);
    else
        load([savedir,num2str(ONOFF(mi,1)),'_Session_',num2str(ONOFF(mi,2)),'_PDDys_CC_ALL_GOODS.mat']);
        size_power=size(POWER); 
    end
  
    if ONOFF(mi,3)==1 % ON
        ON.ID(floor(row))=ONOFF(mi,1);
        ON.Session(floor(row))=ONOFF(mi,2);
        ON.POWER{1}(floor(row),:,:,:,:,:)=POWER;
               
    elseif ONOFF(mi,3)==0 % OFF
        OFF.ID(floor(row))=ONOFF(mi,1);
        OFF.Session(floor(row))=ONOFF(mi,2);
        OFF.POWER{1}(floor(row),:,:,:,:,:)=POWER;
               
     end
    row=row+.5;
    clear Model_Output POWER ;
    
end

% load control data
row=1;
for CTLi=CTLsx;
    
    disp([num2str(CTLi),'_Session_1_PDDys_CC_ALL_GOODS.mat']);
    
    if ONOFF(mi,1)==911 && ONOFF(mi,2)==1  % Bad EEG
        VECTOR=NaN;  POWER=NaN(size_power);   POWER_REST=NaN(size_power);  Baselines=NaN(60,50,2);
    else
        load([savedir,num2str(CTLi),'_Session_1_PDDys_CC_ALL_GOODS.mat']);
    end
    
    CTL.ID(floor(row))=CTLi;
    CTL.Session(floor(row))=1;
    CTL.POWER{1}(floor(row),:,:,:,:,:)=POWER;
        
    row=row+1;
    clear POWER ;
end

CtlN=row-1;

tx2disp=-500:2:1000;
frex=logspace(.01,1.7,50);
Bidx=1;   % 1 is pre-cue baseline | 2 is rest baseline
CHANI=21;  
EVENT=2;  % RESP

% ############################## Time-Frequnecy  ############################################### 
%%%%%%%%%%%%%%%%%%%%%%%%% %%% figure for PD OFF/ON

CTL_PC  = CTL.POWER{Bidx}(:,CHANI,:,:, 1,EVENT);     CTL_PE  = CTL.POWER{Bidx}(:,CHANI,:,:,2,EVENT);     
OFF_PC =  OFF.POWER{Bidx}(:,CHANI,:,:, 1,EVENT);     OFF_PE  = OFF.POWER{Bidx}(:,CHANI,:,:,2,EVENT);     

CTL_PEC =     squeeze( nanmean(CTL_PE, 1)) - squeeze( nanmean(CTL_PC,1));
OFF_PEC =     squeeze( nanmean(OFF_PE, 1)) - squeeze( nanmean(OFF_PC,1)); 
   
subplot(414); 
imagesc(tx2disp,[],  (CTL_PEC-OFF_PEC)); axis xy; hold on; colormap jet
[Corrected_P] = Run_Thresh_2D(squeeze(CTL_PE)- squeeze(CTL_PC), squeeze(OFF_PE)- squeeze(OFF_PC), 'between') ;
contour(tx2disp,1:50,Corrected_P,'k','linewidth',2); clear Corrected_P ;
rectangle('Position',[-200 18 250 9],'EdgeColor','b','LineWidth', 3);
plot([0 0],[1 50],'k:')
set(gca,'clim',[-1 1],'xlim',[-500,1000],'ylim',[1 50],'YTick',1:4:length(frex),'YTickLabel',round(frex(1:4:end)));hold off; title ('Resp-locked CTL-OFF:PostError-PostCorrect');
suptitle('CTL - OFF');