Datasets:
Formats:
parquet
Languages:
English
Size:
10M - 100M
Tags:
biology
chemistry
drug-discovery
clinical-trials
protein-protein-interaction
gene-essentiality
License:
| #!/usr/bin/env python3 | |
| """Analyze L4 temporal accuracy for contamination detection. | |
| Reads existing results.json files from results/llm/l4_*/ and reports | |
| accuracy_pre_2023 vs accuracy_post_2024 gap per model/config. | |
| A gap > 0.15 flags potential training data contamination. | |
| """ | |
| import json | |
| from pathlib import Path | |
| PROJECT_ROOT = Path(__file__).resolve().parent.parent | |
| RESULTS_DIR = PROJECT_ROOT / "results" / "llm" | |
| THRESHOLD = 0.15 | |
| def main(): | |
| rows = [] | |
| for run_dir in sorted(RESULTS_DIR.iterdir()): | |
| if not run_dir.is_dir() or not run_dir.name.startswith("l4_"): | |
| continue | |
| results_file = run_dir / "results.json" | |
| if not results_file.exists(): | |
| continue | |
| with open(results_file) as f: | |
| m = json.load(f) | |
| name = run_dir.name | |
| pre = m.get("accuracy_pre_2023") | |
| post = m.get("accuracy_post_2024") | |
| gap = round(pre - post, 4) if pre is not None and post is not None else None | |
| flag = gap > THRESHOLD if gap is not None else None | |
| rows.append({ | |
| "run": name, | |
| "accuracy": m.get("accuracy"), | |
| "mcc": m.get("mcc"), | |
| "pre_2023": pre, | |
| "post_2024": post, | |
| "gap": gap, | |
| "flag": flag, | |
| }) | |
| if not rows: | |
| print("No L4 results found.") | |
| return | |
| # Print table | |
| print(f"{'Run':<55} {'Acc':>5} {'MCC':>6} {'Pre23':>6} {'Post24':>6} {'Gap':>6} {'Flag'}") | |
| print("-" * 100) | |
| for r in rows: | |
| flag_str = "YES" if r["flag"] else ("NO" if r["flag"] is not None else "N/A") | |
| print( | |
| f"{r['run']:<55} " | |
| f"{r['accuracy']:>5.3f} " | |
| f"{r['mcc']:>6.3f} " | |
| f"{r['pre_2023']:>6.3f} " | |
| f"{r['post_2024']:>6.3f} " | |
| f"{r['gap']:>6.3f} " | |
| f"{flag_str}" | |
| ) | |
| # Summary by model | |
| from collections import defaultdict | |
| model_gaps = defaultdict(list) | |
| for r in rows: | |
| # Extract model from run name | |
| parts = r["run"][3:] # strip "l4_" | |
| if parts.endswith("_zero-shot"): | |
| model = parts[:-10] | |
| elif parts.endswith("_3-shot"): | |
| model = parts[:-7] | |
| else: | |
| model = parts | |
| model = model.rsplit("_fs", 1)[0] | |
| if r["gap"] is not None: | |
| model_gaps[model].append(r["gap"]) | |
| print("\n--- Summary by Model ---") | |
| print(f"{'Model':<40} {'Mean Gap':>8} {'Flag'}") | |
| print("-" * 55) | |
| for model, gaps in sorted(model_gaps.items()): | |
| mean_gap = sum(gaps) / len(gaps) | |
| flag = "YES" if mean_gap > THRESHOLD else "NO" | |
| print(f"{model:<40} {mean_gap:>8.4f} {flag}") | |
| print(f"\nThreshold: {THRESHOLD}") | |
| flagged = sum(1 for r in rows if r["flag"]) | |
| print(f"Flagged runs: {flagged}/{len(rows)}") | |
| if __name__ == "__main__": | |
| main() | |