| |
| |
| """Environment object describing the conda environment.yaml file.""" |
|
|
| from __future__ import annotations |
|
|
| import os |
| import re |
| from itertools import chain |
| from typing import TYPE_CHECKING |
|
|
| from ..base.context import context |
| from ..cli import common |
| from ..common.io import dashlist |
| from ..common.iterators import unique |
| from ..common.path import expand |
| from ..common.serialize import json, yaml |
| from ..core.prefix_data import PrefixData |
| from ..deprecations import deprecated |
| from ..exceptions import ( |
| CondaMultiError, |
| EnvironmentFileEmpty, |
| EnvironmentFileInvalid, |
| EnvironmentFileNotFound, |
| InvalidMatchSpec, |
| ) |
| from ..gateways.connection.download import download_text |
| from ..gateways.connection.session import CONDA_SESSION_SCHEMES |
| from ..history import History |
| from ..models.environment import Environment as EnvironmentModel |
| from ..models.environment import EnvironmentConfig |
| from ..models.match_spec import MatchSpec |
|
|
| if TYPE_CHECKING: |
| from typing import Any |
|
|
| REQUIRED_KEYS = frozenset(("dependencies",)) |
| OPTIONAL_KEYS = frozenset( |
| ( |
| "name", |
| "prefix", |
| "channels", |
| "variables", |
| ) |
| ) |
| VALID_KEYS = frozenset((*REQUIRED_KEYS, *OPTIONAL_KEYS)) |
|
|
|
|
| def field_type_validation(field_name: str, value: Any, value_type: Any) -> None: |
| """Validates the type of a value""" |
| if not isinstance(value, value_type): |
| raise EnvironmentFileInvalid( |
| f"Invalid type for '{field_name}', expected a {value_type.__name__}" |
| ) |
|
|
|
|
| def prefix_validation(prefix: str): |
| """Validate the contents of the prefix field. |
| |
| Will ensure: |
| * prefix is a string |
| """ |
| field_type_validation("prefix", prefix, str) |
|
|
|
|
| def name_validation(name: str): |
| """Validate the contents of the name field. |
| |
| Will ensure: |
| * name is a string |
| """ |
| field_type_validation("name", name, str) |
|
|
|
|
| def dependencies_validation(dependencies: list): |
| """Validate the contents of the dependencies field. |
| |
| Will ensure: |
| * dependencies are a list |
| * all string dependencies are MatchSpec compatible |
| * the only other type allowed is a dict |
| """ |
| field_type_validation("dependencies", dependencies, list) |
|
|
| errors = [] |
| for dependency in dependencies: |
| if isinstance(dependency, str): |
| |
| |
| try: |
| MatchSpec(dependency) |
| except InvalidMatchSpec as err: |
| errors.append(EnvironmentFileInvalid(str(err))) |
| elif isinstance(dependency, dict): |
| |
| |
| pass |
| else: |
| |
| errors.append( |
| EnvironmentFileInvalid( |
| f"'{dependency}' is an invalid type for a 'dependency'" |
| ) |
| ) |
|
|
| if errors: |
| raise CondaMultiError(errors) |
|
|
|
|
| def channels_validation(channels: list): |
| """Validate the contents of the channels field. |
| |
| Will ensure: |
| * channels is a list |
| * all entries are strings |
| """ |
| field_type_validation("channels", channels, list) |
|
|
| for channel in channels: |
| if not isinstance(channel, str): |
| raise EnvironmentFileInvalid( |
| "`channels` key must only contain strings. Found '{channel}'" |
| ) |
|
|
|
|
| def variables_validation(variables: dict[str, str]): |
| """Validate the contents of the variables field. |
| |
| Will ensure: |
| * variables is a dict |
| * all entries are strings |
| """ |
| field_type_validation("variables", variables, dict) |
|
|
|
|
| SCHEMA_VALIDATORS = { |
| "name": name_validation, |
| "prefix": prefix_validation, |
| "dependencies": dependencies_validation, |
| "channels": channels_validation, |
| "variables": variables_validation, |
| } |
|
|
|
|
| def get_schema_errors(data: dict) -> list[EnvironmentFileInvalid]: |
| """Parses environment.yaml data to build a list of schema errors |
| |
| Will produce errors to ensure: |
| * all required fields are present |
| * all fields contain valid data |
| |
| :param dict data: The contents of the environment.yaml |
| :returns errors: A list of EnvironmentFileInvalid exceptions that occurred during validation |
| """ |
| errors = [] |
| |
| for field in REQUIRED_KEYS.difference(data): |
| errors.append(EnvironmentFileInvalid(f"Missing required field '{field}'")) |
|
|
| |
| for key, validator in SCHEMA_VALIDATORS.items(): |
| try: |
| validator(data[key]) |
| except KeyError: |
| pass |
| except EnvironmentFileInvalid as err: |
| errors.append(err) |
|
|
| return errors |
|
|
|
|
| def validate_keys(data, kwargs): |
| """Check for unknown keys, remove them and print a warning""" |
| invalid_keys = [] |
| new_data = data.copy() if data else {} |
| for key in data.keys(): |
| if key not in VALID_KEYS: |
| invalid_keys.append(key) |
| new_data.pop(key) |
|
|
| if invalid_keys: |
| filename = kwargs.get("filename") |
| verb = "are" if len(invalid_keys) != 1 else "is" |
| plural = "s" if len(invalid_keys) != 1 else "" |
| print( |
| f"\nEnvironmentSectionNotValid: The following section{plural} on " |
| f"'{filename}' {verb} invalid and will be ignored:" |
| ) |
| for key in invalid_keys: |
| print(f" - {key}") |
| print() |
|
|
| deps = data.get("dependencies") or [] |
| depsplit = re.compile(r"[<>~\s=]") |
| is_pip = lambda dep: "pip" in depsplit.split(dep)[0].split("::") |
| lists_pip = any(is_pip(dep) for dep in deps if not isinstance(dep, dict)) |
| for dep in deps: |
| if isinstance(dep, dict) and "pip" in dep and not lists_pip: |
| print( |
| "Warning: you have pip-installed dependencies in your environment file, " |
| "but you do not list pip itself as one of your conda dependencies. Conda " |
| "may not use the correct pip to install your packages, and they may end up " |
| "in the wrong place. Please add an explicit pip dependency. I'm adding one" |
| " for you, but still nagging you." |
| ) |
| new_data["dependencies"].insert(0, "pip") |
| break |
| return new_data |
|
|
|
|
| def from_environment( |
| name, prefix, no_builds=False, ignore_channels=False, from_history=False |
| ): |
| """ |
| Get ``EnvironmentYaml`` object from prefix |
| Args: |
| name: The name of environment |
| prefix: The path of prefix |
| no_builds: Whether has build requirement |
| ignore_channels: whether ignore_channels |
| from_history: Whether environment file should be based on explicit specs in history |
| |
| Returns: EnvironmentYaml object |
| """ |
| pd = PrefixData(prefix, interoperability=True) |
| variables = pd.get_environment_env_vars() |
|
|
| if from_history: |
| history = History(prefix).get_requested_specs_map() |
| deps = [str(package) for package in history.values()] |
| return EnvironmentYaml( |
| name=name, |
| dependencies=deps, |
| channels=list(context.channels), |
| prefix=prefix, |
| variables=variables, |
| ) |
|
|
| conda_precs = pd.get_conda_packages() |
| python_precs = pd.get_python_packages() |
|
|
| dependencies = [ |
| conda_prec.spec_no_build if no_builds else conda_prec.spec |
| for conda_prec in conda_precs |
| ] |
| if python_precs: |
| dependencies.append( |
| { |
| "pip": [ |
| f"{python_prec.name}=={python_prec.version}" |
| for python_prec in python_precs |
| ] |
| } |
| ) |
|
|
| channels = list(context.channels) |
| if not ignore_channels: |
| for conda_prec in conda_precs: |
| canonical_name = conda_prec.channel.canonical_name |
| if canonical_name not in channels: |
| channels.insert(0, canonical_name) |
|
|
| return EnvironmentYaml( |
| name=name, |
| dependencies=dependencies, |
| channels=channels, |
| prefix=prefix, |
| variables=variables, |
| ) |
|
|
|
|
| def from_yaml(yamlstr: str, **kwargs) -> EnvironmentYaml: |
| """Load and return a ``EnvironmentYaml`` from a given ``yaml`` string |
| |
| :param yamlstr: The contents of the environment.yaml |
| :param raise_validation_errors: Indicates if an error should be raised if the yamlstr |
| is found to be invalid |
| :returns EnvironmentYaml: A representation of the environment file |
| """ |
| data = yaml.loads(yamlstr) |
| filename = kwargs.get("filename") |
| if data is None: |
| raise EnvironmentFileEmpty(filename) |
|
|
| |
| errors = get_schema_errors(data) |
| if errors: |
| |
| deprecated.topic( |
| "26.3", |
| "26.9", |
| topic="The environment file is not fully CEP 24 compliant", |
| addendum=( |
| "In the future, this configuration will be rejected. Please fix the following " |
| "errors in order to make the configuration valid: " |
| f"{dashlist(errors)}" |
| ), |
| deprecation_type=FutureWarning, |
| ) |
|
|
| data = validate_keys(data, kwargs) |
|
|
| if kwargs is not None: |
| for key, value in kwargs.items(): |
| data[key] = value |
| _expand_channels(data) |
| return EnvironmentYaml(**data) |
|
|
|
|
| def _expand_channels(data): |
| """Expands ``EnvironmentYaml`` variables for the channels found in the ``yaml`` data""" |
| data["channels"] = [ |
| os.path.expandvars(channel) for channel in data.get("channels", []) |
| ] |
|
|
|
|
| def load_file(filename): |
| """Load and return an yaml string from a given file""" |
| url_scheme = filename.split("://", 1)[0] |
| if url_scheme in CONDA_SESSION_SCHEMES: |
| yamlstr = download_text(filename) |
| elif not os.path.exists(filename): |
| raise EnvironmentFileNotFound(filename) |
| else: |
| with open(filename, "rb") as fp: |
| yamlb = fp.read() |
| try: |
| yamlstr = yamlb.decode("utf-8") |
| except UnicodeDecodeError: |
| yamlstr = yamlb.decode("utf-16") |
| return yamlstr |
|
|
|
|
| def from_file(filename): |
| """Load and return an ``EnvironmentYaml`` from a given file""" |
| yamlstr = load_file(filename) |
| return from_yaml(yamlstr, filename=filename) |
|
|
|
|
| class Dependencies(dict): |
| """A ``dict`` subclass that parses the raw dependencies into a conda and pip list""" |
|
|
| def __init__(self, raw, *args, **kwargs): |
| super().__init__(*args, **kwargs) |
| self.raw = raw |
| self.parse() |
|
|
| def parse(self): |
| """Parse the raw dependencies into a conda and pip list""" |
| if not self.raw: |
| return |
|
|
| self.update({"conda": []}) |
|
|
| for line in self.raw: |
| if isinstance(line, dict): |
| self.update(line) |
| else: |
| self["conda"].append(str(MatchSpec(line))) |
|
|
| if "pip" in self: |
| if not self["pip"]: |
| del self["pip"] |
| if not any(MatchSpec(s).name == "pip" for s in self["conda"]): |
| self["conda"].append("pip") |
|
|
| |
| def add(self, package_name): |
| """Add a package to the ``EnvironmentYaml``""" |
| self.raw.append(package_name) |
| self.parse() |
|
|
|
|
| class EnvironmentYaml: |
| """A class representing an ``environment.yaml`` file""" |
|
|
| def __init__( |
| self, |
| name=None, |
| filename=None, |
| channels=None, |
| dependencies=None, |
| prefix=None, |
| variables=None, |
| ): |
| self.name = name |
| self.filename = filename |
| self.prefix = prefix |
| self.dependencies = Dependencies(dependencies) |
| self.variables = variables |
|
|
| if channels is None: |
| channels = [] |
| self.channels = channels |
|
|
| def add_channels(self, channels): |
| """Add channels to the ``EnvironmentYaml``""" |
| self.channels = list(unique(chain.from_iterable((channels, self.channels)))) |
|
|
| def remove_channels(self): |
| """Remove all channels from the ``EnvironmentYaml``""" |
| self.channels = [] |
|
|
| def to_dict(self, stream=None): |
| """Convert information related to the ``EnvironmentYaml`` into a dictionary""" |
| d = {"name": self.name} |
| if self.channels: |
| d["channels"] = self.channels |
| if self.dependencies: |
| d["dependencies"] = self.dependencies.raw |
| if self.variables: |
| d["variables"] = self.variables |
| if self.prefix: |
| d["prefix"] = self.prefix |
| if stream is None: |
| return d |
| stream.write(json.dumps(d)) |
|
|
| def to_yaml(self, stream=None): |
| """Convert information related to the ``EnvironmentYaml`` into a ``yaml`` string""" |
| d = self.to_dict() |
| return yaml.write(d, fp=stream) |
|
|
| def save(self): |
| """Save the ``EnvironmentYaml`` data to a ``yaml`` file""" |
| with open(self.filename, "wb") as fp: |
| self.to_yaml(stream=fp) |
|
|
| def to_environment_model(self) -> EnvironmentModel: |
| """Convert the ``Environment`` into a ``model.Environment`` object""" |
| config = EnvironmentConfig(channels=tuple(self.channels)) |
|
|
| external_packages = {} |
| if pip_dependencies := self.dependencies.get("pip"): |
| external_packages["pip"] = pip_dependencies |
|
|
| requested_packages = [ |
| MatchSpec(spec) for spec in self.dependencies.get("conda", []) |
| ] |
|
|
| return EnvironmentModel( |
| prefix=self.prefix or context.target_prefix, |
| platform=context.subdir, |
| name=self.name, |
| config=config, |
| variables=self.variables, |
| external_packages=external_packages, |
| requested_packages=requested_packages, |
| ) |
|
|
|
|
| @deprecated("26.3", "26.9", addendum="Use `conda.env.env.EnvironmentYaml` instead.") |
| class Environment(EnvironmentYaml): |
| """A class representing an ``environment.yaml`` file""" |
|
|
|
|
| @deprecated("25.9", "26.3") |
| def get_filename(filename): |
| """Expand filename if local path or return the ``url``""" |
| url_scheme = filename.split("://", 1)[0] |
| if url_scheme in CONDA_SESSION_SCHEMES: |
| return filename |
| else: |
| return expand(filename) |
|
|
|
|
| def print_result(args, prefix, result): |
| """Print the result of an install operation""" |
| if context.json: |
| if result["conda"] is None and result["pip"] is None: |
| common.stdout_json_success( |
| message="All requested packages already installed." |
| ) |
| else: |
| if result["conda"] is not None: |
| actions = result["conda"] |
| else: |
| actions = {} |
| if result["pip"] is not None: |
| actions["PIP"] = result["pip"] |
| common.stdout_json_success(prefix=prefix, actions=actions) |
| else: |
| common.print_activate(args.name or prefix) |
|
|