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  1. miniconda3/conda-meta/ruamel.yaml-0.18.16-py313h4aee224_0.json +112 -0
  2. miniconda3/conda-meta/ruamel.yaml.clib-0.2.14-py313h4aee224_0.json +47 -0
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  25. miniconda3/conda-meta/xorg-libxau-1.0.12-h9b100fa_0.json +50 -0
  26. miniconda3/conda-meta/xorg-libxdmcp-1.1.5-h9b100fa_0.json +50 -0
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  33. miniconda3/condabin/conda +13 -0
  34. miniconda3/condarc.d/anaconda-auth.yml +5 -0
  35. miniconda3/envs/.conda_envs_dir_test +0 -0
  36. miniconda3/envs/active_proaction/bin/2to3 +5 -0
  37. miniconda3/envs/active_proaction/bin/2to3-3.10 +5 -0
  38. miniconda3/envs/active_proaction/bin/accelerate +6 -0
  39. miniconda3/envs/active_proaction/bin/accelerate-config +6 -0
  40. miniconda3/envs/active_proaction/bin/accelerate-estimate-memory +6 -0
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  49. miniconda3/envs/active_proaction/bin/bzfgrep +85 -0
  50. miniconda3/envs/active_proaction/bin/bzgrep +85 -0
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miniconda3/conda-meta/zlib-1.3.1-hb25bd0a_0.json ADDED
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1
+ {
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+ "name": "zlib",
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+ "version": "1.3.1",
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+ "build": "hb25bd0a_0",
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+ "build_number": 0,
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+ "channel": "https://repo.anaconda.com/pkgs/main/linux-64",
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+ "subdir": "linux-64",
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+ "fn": "zlib-1.3.1-hb25bd0a_0.conda",
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+ "md5": "9f3a877e5e0fa0fb39253a59ff824861",
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+ "url": "https://repo.anaconda.com/pkgs/main/linux-64/zlib-1.3.1-hb25bd0a_0.conda",
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+ "sha256": "cf30f83189a30b12a9239f132ea0ce676fa822a52045adb0f9ff9b3b4d79ead6",
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+ "arch": "x86_64",
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+ "depends": [
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+ "__glibc >=2.17,<3.0.a0",
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+ "libgcc-ng >=11.2.0",
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+ "libzlib 1.3.1 hb25bd0a_0"
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+ ],
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+ "extracted_package_dir": "/mnt/bn/bohanzhainas1/jiashuo/miniconda3/pkgs/zlib-1.3.1-hb25bd0a_0",
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+ "files": [
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+ "include/zconf.h",
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+ "include/zlib.h",
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+ "lib/libz.a",
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+ "lib/libz.so",
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+ "lib/pkgconfig/zlib.pc"
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+ ],
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+ "paths_data": {
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+ "paths": [
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+ {
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+ "file_mode": "text",
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+ "path_type": "hardlink",
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+ "type": 1
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+ }
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+ }
miniconda3/conda-meta/zstandard-0.24.0-py313h3d778a8_0.json ADDED
@@ -0,0 +1,56 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "name": "zstandard",
3
+ "version": "0.24.0",
4
+ "build": "py313h3d778a8_0",
5
+ "build_number": 0,
6
+ "channel": "https://repo.anaconda.com/pkgs/main/linux-64",
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+ "subdir": "linux-64",
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+ "fn": "zstandard-0.24.0-py313h3d778a8_0.conda",
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+ "md5": "78685aca3b481cf213b92abfbe0b2b21",
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+ "url": "https://repo.anaconda.com/pkgs/main/linux-64/zstandard-0.24.0-py313h3d778a8_0.conda",
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+ "sha256": "e3a31827def7e52e8b17481605be98ddc542d651c5267ddfb31780db3d1d78f0",
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+ "arch": "x86_64",
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+ "platform": "linux",
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+ "depends": [
15
+ "__glibc >=2.28,<3.0.a0",
16
+ "cffi >=1.17",
17
+ "libgcc-ng >=11.2.0",
18
+ "python >=3.13,<3.14.0a0",
19
+ "python_abi 3.13.* *_cp313",
20
+ "zstd >=1.5.7,<1.5.8.0a0",
21
+ "zstd >=1.5.7,<1.6.0a0"
22
+ ],
23
+ "constrains": [],
24
+ "license": "BSD-3-Clause",
25
+ "license_family": "BSD",
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+ "timestamp": 1758189113000,
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+ "size": 422402,
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+ "requested_spec": "pkgs/main/linux-64::zstandard==0.24.0=py313h3d778a8_0",
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+ "extracted_package_dir": "/mnt/bn/bohanzhainas1/jiashuo/miniconda3/pkgs/zstandard-0.24.0-py313h3d778a8_0",
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+ "files": [
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+ "lib/python3.13/site-packages/zstandard-0.24.0.dist-info/INSTALLER",
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+ "lib/python3.13/site-packages/zstandard-0.24.0.dist-info/METADATA",
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+ "lib/python3.13/site-packages/zstandard-0.24.0.dist-info/RECORD",
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+ "lib/python3.13/site-packages/zstandard-0.24.0.dist-info/WHEEL",
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+ "lib/python3.13/site-packages/zstandard-0.24.0.dist-info/direct_url.json",
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+ "lib/python3.13/site-packages/zstandard-0.24.0.dist-info/top_level.txt",
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+ "lib/python3.13/site-packages/zstandard/__init__.py",
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+ "lib/python3.13/site-packages/zstandard/__init__.pyi",
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+ "lib/python3.13/site-packages/zstandard/__pycache__/__init__.cpython-313.pyc",
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+ "lib/python3.13/site-packages/zstandard/__pycache__/backend_cffi.cpython-313.pyc",
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+ "lib/python3.13/site-packages/zstandard/_cffi.cpython-313-x86_64-linux-gnu.so",
44
+ "lib/python3.13/site-packages/zstandard/backend_c.cpython-313-x86_64-linux-gnu.so",
45
+ "lib/python3.13/site-packages/zstandard/backend_cffi.py",
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+ "lib/python3.13/site-packages/zstandard/py.typed"
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+ ],
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+ "paths_data": {
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+ "paths_version": 1,
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+ "paths": []
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+ },
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+ "link": {
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+ "source": "/mnt/bn/bohanzhainas1/jiashuo/miniconda3/pkgs/zstandard-0.24.0-py313h3d778a8_0",
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+ "type": 1
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+ }
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+ }
miniconda3/conda-meta/zstd-1.5.7-h11fc155_0.json ADDED
@@ -0,0 +1,73 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "name": "zstd",
3
+ "version": "1.5.7",
4
+ "build": "h11fc155_0",
5
+ "build_number": 0,
6
+ "channel": "https://repo.anaconda.com/pkgs/main/linux-64",
7
+ "subdir": "linux-64",
8
+ "fn": "zstd-1.5.7-h11fc155_0.conda",
9
+ "md5": "93b0e546434bfb874aeefd6bb6cf40bb",
10
+ "url": "https://repo.anaconda.com/pkgs/main/linux-64/zstd-1.5.7-h11fc155_0.conda",
11
+ "sha256": "5d1b1c5041b80b47d2ff06c0ebda0c334f53f521efac824fc79a139cfd9fc4f5",
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+ "arch": "x86_64",
13
+ "platform": "linux",
14
+ "depends": [
15
+ "__glibc >=2.28,<3.0.a0",
16
+ "libgcc-ng >=11.2.0",
17
+ "libstdcxx-ng >=11.2.0",
18
+ "libzlib >=1.3.1,<2.0a0",
19
+ "lz4-c >=1.9.4,<1.10.0a0",
20
+ "xz >=5.6.4,<6.0a0"
21
+ ],
22
+ "constrains": [],
23
+ "license": "BSD-3-Clause AND GPL-2.0-or-later",
24
+ "license_family": "BSD",
25
+ "timestamp": 1758039176000,
26
+ "size": 622604,
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+ "requested_spec": "pkgs/main/linux-64::zstd==1.5.7=h11fc155_0",
28
+ "package_tarball_full_path": "/mnt/bn/bohanzhainas1/jiashuo/miniconda3/pkgs/zstd-1.5.7-h11fc155_0.conda",
29
+ "extracted_package_dir": "/mnt/bn/bohanzhainas1/jiashuo/miniconda3/pkgs/zstd-1.5.7-h11fc155_0",
30
+ "files": [
31
+ "bin/unzstd",
32
+ "bin/zstd",
33
+ "bin/zstdcat",
34
+ "bin/zstdgrep",
35
+ "bin/zstdless",
36
+ "bin/zstdmt",
37
+ "include/zdict.h",
38
+ "include/zstd.h",
39
+ "include/zstd_errors.h",
40
+ "lib/cmake/zstd/zstdConfig.cmake",
41
+ "lib/cmake/zstd/zstdConfigVersion.cmake",
42
+ "lib/cmake/zstd/zstdTargets-release.cmake",
43
+ "lib/cmake/zstd/zstdTargets.cmake",
44
+ "lib/libzstd.a",
45
+ "lib/libzstd.so",
46
+ "lib/libzstd.so.1",
47
+ "lib/libzstd.so.1.5.7",
48
+ "lib/pkgconfig/libzstd.pc",
49
+ "share/man/man1/unzstd.1",
50
+ "share/man/man1/zstd.1",
51
+ "share/man/man1/zstdcat.1",
52
+ "share/man/man1/zstdgrep.1",
53
+ "share/man/man1/zstdless.1"
54
+ ],
55
+ "paths_data": {
56
+ "paths_version": 1,
57
+ "paths": [
58
+ {
59
+ "_path": "lib/pkgconfig/libzstd.pc",
60
+ "prefix_placeholder": "/home/task_175803855979044/conda-bld/zstd_1758039136853/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl",
61
+ "file_mode": "text",
62
+ "path_type": "hardlink",
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+ "sha256": "567f982d98639395f441f81874318a2262861bc9ced690e45855bb4bc774e3df",
64
+ "size_in_bytes": 709,
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+ }
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+ ]
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+ },
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+ "link": {
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+ "source": "/mnt/bn/bohanzhainas1/jiashuo/miniconda3/pkgs/zstd-1.5.7-h11fc155_0",
71
+ "type": 1
72
+ }
73
+ }
miniconda3/condabin/conda ADDED
@@ -0,0 +1,13 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/mnt/bn/bohanzhainas1/jiashuo/miniconda3/bin/python
2
+ # -*- coding: utf-8 -*-
3
+ import sys
4
+ # Before any more imports, leave cwd out of sys.path for internal 'conda shell.*' commands.
5
+ # see https://github.com/conda/conda/issues/6549
6
+ if len(sys.argv) > 1 and sys.argv[1].startswith('shell.') and sys.path and sys.path[0] == '':
7
+ # The standard first entry in sys.path is an empty string,
8
+ # and os.path.abspath('') expands to os.getcwd().
9
+ del sys.path[0]
10
+
11
+ if __name__ == '__main__':
12
+ from conda.cli import main
13
+ sys.exit(main())
miniconda3/condarc.d/anaconda-auth.yml ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ # DO NOT EDIT THIS FILE.
2
+ # This file was generated automatically for anaconda-auth.
3
+ channel_settings:
4
+ - channel: "https://repo.anaconda.cloud/*"
5
+ auth: "anaconda-auth"
miniconda3/envs/.conda_envs_dir_test ADDED
File without changes
miniconda3/envs/active_proaction/bin/2to3 ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ #!/mnt/bn/bohanzhainas1/jiashuo/miniconda3/envs/active_proaction/bin/python3.10
2
+ import sys
3
+ from lib2to3.main import main
4
+
5
+ sys.exit(main("lib2to3.fixes"))
miniconda3/envs/active_proaction/bin/2to3-3.10 ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ #!/mnt/bn/bohanzhainas1/jiashuo/miniconda3/envs/active_proaction/bin/python3.10
2
+ import sys
3
+ from lib2to3.main import main
4
+
5
+ sys.exit(main("lib2to3.fixes"))
miniconda3/envs/active_proaction/bin/accelerate ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ #!/mnt/bn/bohanzhainas1/jiashuo/miniconda3/envs/active_proaction/bin/python3.10
2
+ import sys
3
+ from accelerate.commands.accelerate_cli import main
4
+ if __name__ == '__main__':
5
+ sys.argv[0] = sys.argv[0].removesuffix('.exe')
6
+ sys.exit(main())
miniconda3/envs/active_proaction/bin/accelerate-config ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ #!/mnt/bn/bohanzhainas1/jiashuo/miniconda3/envs/active_proaction/bin/python3.10
2
+ import sys
3
+ from accelerate.commands.config import main
4
+ if __name__ == '__main__':
5
+ sys.argv[0] = sys.argv[0].removesuffix('.exe')
6
+ sys.exit(main())
miniconda3/envs/active_proaction/bin/accelerate-estimate-memory ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ #!/mnt/bn/bohanzhainas1/jiashuo/miniconda3/envs/active_proaction/bin/python3.10
2
+ import sys
3
+ from accelerate.commands.estimate import main
4
+ if __name__ == '__main__':
5
+ sys.argv[0] = sys.argv[0].removesuffix('.exe')
6
+ sys.exit(main())
miniconda3/envs/active_proaction/bin/accelerate-launch ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ #!/mnt/bn/bohanzhainas1/jiashuo/miniconda3/envs/active_proaction/bin/python3.10
2
+ import sys
3
+ from accelerate.commands.launch import main
4
+ if __name__ == '__main__':
5
+ sys.argv[0] = sys.argv[0].removesuffix('.exe')
6
+ sys.exit(main())
miniconda3/envs/active_proaction/bin/accelerate-merge-weights ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ #!/mnt/bn/bohanzhainas1/jiashuo/miniconda3/envs/active_proaction/bin/python3.10
2
+ import sys
3
+ from accelerate.commands.merge import main
4
+ if __name__ == '__main__':
5
+ sys.argv[0] = sys.argv[0].removesuffix('.exe')
6
+ sys.exit(main())
miniconda3/envs/active_proaction/bin/astpretty ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ #!/mnt/bn/bohanzhainas1/jiashuo/miniconda3/envs/active_proaction/bin/python3.10
2
+ import sys
3
+ from astpretty import main
4
+ if __name__ == '__main__':
5
+ sys.argv[0] = sys.argv[0].removesuffix('.exe')
6
+ sys.exit(main())
miniconda3/envs/active_proaction/bin/beeline ADDED
@@ -0,0 +1,32 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/usr/bin/env bash
2
+
3
+ #
4
+ # Licensed to the Apache Software Foundation (ASF) under one or more
5
+ # contributor license agreements. See the NOTICE file distributed with
6
+ # this work for additional information regarding copyright ownership.
7
+ # The ASF licenses this file to You under the Apache License, Version 2.0
8
+ # (the "License"); you may not use this file except in compliance with
9
+ # the License. You may obtain a copy of the License at
10
+ #
11
+ # http://www.apache.org/licenses/LICENSE-2.0
12
+ #
13
+ # Unless required by applicable law or agreed to in writing, software
14
+ # distributed under the License is distributed on an "AS IS" BASIS,
15
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
16
+ # See the License for the specific language governing permissions and
17
+ # limitations under the License.
18
+ #
19
+
20
+ #
21
+ # Shell script for starting BeeLine
22
+
23
+ # Enter posix mode for bash
24
+ set -o posix
25
+
26
+ # Figure out if SPARK_HOME is set
27
+ if [ -z "${SPARK_HOME}" ]; then
28
+ source "$(dirname "$0")"/find-spark-home
29
+ fi
30
+
31
+ CLASS="org.apache.hive.beeline.BeeLine"
32
+ exec "${SPARK_HOME}/bin/spark-class" $CLASS "$@"
miniconda3/envs/active_proaction/bin/beeline.cmd ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ @echo off
2
+
3
+ rem
4
+ rem Licensed to the Apache Software Foundation (ASF) under one or more
5
+ rem contributor license agreements. See the NOTICE file distributed with
6
+ rem this work for additional information regarding copyright ownership.
7
+ rem The ASF licenses this file to You under the Apache License, Version 2.0
8
+ rem (the "License"); you may not use this file except in compliance with
9
+ rem the License. You may obtain a copy of the License at
10
+ rem
11
+ rem http://www.apache.org/licenses/LICENSE-2.0
12
+ rem
13
+ rem Unless required by applicable law or agreed to in writing, software
14
+ rem distributed under the License is distributed on an "AS IS" BASIS,
15
+ rem WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
16
+ rem See the License for the specific language governing permissions and
17
+ rem limitations under the License.
18
+ rem
19
+
20
+ rem The outermost quotes are used to prevent Windows command line parse error
21
+ rem when there are some quotes in parameters, see SPARK-21877.
22
+ cmd /V /E /C ""%~dp0spark-class.cmd" org.apache.hive.beeline.BeeLine %*"
miniconda3/envs/active_proaction/bin/bzcmp ADDED
@@ -0,0 +1,76 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/sh
2
+ # sh is buggy on RS/6000 AIX 3.2. Replace above line with #!/bin/ksh
3
+
4
+ # Bzcmp/diff wrapped for bzip2,
5
+ # adapted from zdiff by Philippe Troin <phil@fifi.org> for Debian GNU/Linux.
6
+
7
+ # Bzcmp and bzdiff are used to invoke the cmp or the diff pro-
8
+ # gram on compressed files. All options specified are passed
9
+ # directly to cmp or diff. If only 1 file is specified, then
10
+ # the files compared are file1 and an uncompressed file1.gz.
11
+ # If two files are specified, then they are uncompressed (if
12
+ # necessary) and fed to cmp or diff. The exit status from cmp
13
+ # or diff is preserved.
14
+
15
+ PATH="/usr/bin:/bin:$PATH"; export PATH
16
+ prog=`echo $0 | sed 's|.*/||'`
17
+ case "$prog" in
18
+ *cmp) comp=${CMP-cmp} ;;
19
+ *) comp=${DIFF-diff} ;;
20
+ esac
21
+
22
+ OPTIONS=
23
+ FILES=
24
+ for ARG
25
+ do
26
+ case "$ARG" in
27
+ -*) OPTIONS="$OPTIONS $ARG";;
28
+ *) if test -f "$ARG"; then
29
+ FILES="$FILES $ARG"
30
+ else
31
+ echo "${prog}: $ARG not found or not a regular file"
32
+ exit 1
33
+ fi ;;
34
+ esac
35
+ done
36
+ if test -z "$FILES"; then
37
+ echo "Usage: $prog [${comp}_options] file [file]"
38
+ exit 1
39
+ fi
40
+ set $FILES
41
+ if test $# -eq 1; then
42
+ FILE=`echo "$1" | sed 's/.bz2$//'`
43
+ bzip2 -cd "$FILE.bz2" | $comp $OPTIONS - "$FILE"
44
+ STAT="$?"
45
+
46
+ elif test $# -eq 2; then
47
+ case "$1" in
48
+ *.bz2)
49
+ case "$2" in
50
+ *.bz2)
51
+ F=`echo "$2" | sed 's|.*/||;s|.bz2$||'`
52
+ tmp=`mktemp "${TMPDIR:-/tmp}"/bzdiff.XXXXXXXXXX` || {
53
+ echo 'cannot create a temporary file' >&2
54
+ exit 1
55
+ }
56
+ bzip2 -cdfq "$2" > "$tmp"
57
+ bzip2 -cdfq "$1" | $comp $OPTIONS - "$tmp"
58
+ STAT="$?"
59
+ /bin/rm -f "$tmp";;
60
+
61
+ *) bzip2 -cdfq "$1" | $comp $OPTIONS - "$2"
62
+ STAT="$?";;
63
+ esac;;
64
+ *) case "$2" in
65
+ *.bz2)
66
+ bzip2 -cdfq "$2" | $comp $OPTIONS "$1" -
67
+ STAT="$?";;
68
+ *) $comp $OPTIONS "$1" "$2"
69
+ STAT="$?";;
70
+ esac;;
71
+ esac
72
+ else
73
+ echo "Usage: $prog [${comp}_options] file [file]"
74
+ exit 1
75
+ fi
76
+ exit "$STAT"
miniconda3/envs/active_proaction/bin/bzdiff ADDED
@@ -0,0 +1,76 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/sh
2
+ # sh is buggy on RS/6000 AIX 3.2. Replace above line with #!/bin/ksh
3
+
4
+ # Bzcmp/diff wrapped for bzip2,
5
+ # adapted from zdiff by Philippe Troin <phil@fifi.org> for Debian GNU/Linux.
6
+
7
+ # Bzcmp and bzdiff are used to invoke the cmp or the diff pro-
8
+ # gram on compressed files. All options specified are passed
9
+ # directly to cmp or diff. If only 1 file is specified, then
10
+ # the files compared are file1 and an uncompressed file1.gz.
11
+ # If two files are specified, then they are uncompressed (if
12
+ # necessary) and fed to cmp or diff. The exit status from cmp
13
+ # or diff is preserved.
14
+
15
+ PATH="/usr/bin:/bin:$PATH"; export PATH
16
+ prog=`echo $0 | sed 's|.*/||'`
17
+ case "$prog" in
18
+ *cmp) comp=${CMP-cmp} ;;
19
+ *) comp=${DIFF-diff} ;;
20
+ esac
21
+
22
+ OPTIONS=
23
+ FILES=
24
+ for ARG
25
+ do
26
+ case "$ARG" in
27
+ -*) OPTIONS="$OPTIONS $ARG";;
28
+ *) if test -f "$ARG"; then
29
+ FILES="$FILES $ARG"
30
+ else
31
+ echo "${prog}: $ARG not found or not a regular file"
32
+ exit 1
33
+ fi ;;
34
+ esac
35
+ done
36
+ if test -z "$FILES"; then
37
+ echo "Usage: $prog [${comp}_options] file [file]"
38
+ exit 1
39
+ fi
40
+ set $FILES
41
+ if test $# -eq 1; then
42
+ FILE=`echo "$1" | sed 's/.bz2$//'`
43
+ bzip2 -cd "$FILE.bz2" | $comp $OPTIONS - "$FILE"
44
+ STAT="$?"
45
+
46
+ elif test $# -eq 2; then
47
+ case "$1" in
48
+ *.bz2)
49
+ case "$2" in
50
+ *.bz2)
51
+ F=`echo "$2" | sed 's|.*/||;s|.bz2$||'`
52
+ tmp=`mktemp "${TMPDIR:-/tmp}"/bzdiff.XXXXXXXXXX` || {
53
+ echo 'cannot create a temporary file' >&2
54
+ exit 1
55
+ }
56
+ bzip2 -cdfq "$2" > "$tmp"
57
+ bzip2 -cdfq "$1" | $comp $OPTIONS - "$tmp"
58
+ STAT="$?"
59
+ /bin/rm -f "$tmp";;
60
+
61
+ *) bzip2 -cdfq "$1" | $comp $OPTIONS - "$2"
62
+ STAT="$?";;
63
+ esac;;
64
+ *) case "$2" in
65
+ *.bz2)
66
+ bzip2 -cdfq "$2" | $comp $OPTIONS "$1" -
67
+ STAT="$?";;
68
+ *) $comp $OPTIONS "$1" "$2"
69
+ STAT="$?";;
70
+ esac;;
71
+ esac
72
+ else
73
+ echo "Usage: $prog [${comp}_options] file [file]"
74
+ exit 1
75
+ fi
76
+ exit "$STAT"
miniconda3/envs/active_proaction/bin/bzegrep ADDED
@@ -0,0 +1,85 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/sh
2
+
3
+ # Bzgrep wrapped for bzip2,
4
+ # adapted from zgrep by Philippe Troin <phil@fifi.org> for Debian GNU/Linux.
5
+ ## zgrep notice:
6
+ ## zgrep -- a wrapper around a grep program that decompresses files as needed
7
+ ## Adapted from a version sent by Charles Levert <charles@comm.polymtl.ca>
8
+
9
+ PATH="/usr/bin:$PATH"; export PATH
10
+
11
+ prog=`echo $0 | sed 's|.*/||'`
12
+ case "$prog" in
13
+ *egrep) grep=${EGREP-egrep} ;;
14
+ *fgrep) grep=${FGREP-fgrep} ;;
15
+ *) grep=${GREP-grep} ;;
16
+ esac
17
+ pat=""
18
+ while test $# -ne 0; do
19
+ case "$1" in
20
+ -e | -f) opt="$opt $1"; shift; pat="$1"
21
+ if test "$grep" = grep; then # grep is buggy with -e on SVR4
22
+ grep=egrep
23
+ fi;;
24
+ -A | -B) opt="$opt $1 $2"; shift;;
25
+ -*) opt="$opt $1";;
26
+ *) if test -z "$pat"; then
27
+ pat="$1"
28
+ else
29
+ break;
30
+ fi;;
31
+ esac
32
+ shift
33
+ done
34
+
35
+ if test -z "$pat"; then
36
+ echo "grep through bzip2 files"
37
+ echo "usage: $prog [grep_options] pattern [files]"
38
+ exit 1
39
+ fi
40
+
41
+ list=0
42
+ silent=0
43
+ op=`echo "$opt" | sed -e 's/ //g' -e 's/-//g'`
44
+ case "$op" in
45
+ *l*) list=1
46
+ esac
47
+ case "$op" in
48
+ *h*) silent=1
49
+ esac
50
+
51
+ if test $# -eq 0; then
52
+ bzip2 -cdfq | $grep $opt "$pat"
53
+ exit $?
54
+ fi
55
+
56
+ res=0
57
+ for i do
58
+ if test -f "$i"; then :; else if test -f "$i.bz2"; then i="$i.bz2"; fi; fi
59
+ if test $list -eq 1; then
60
+ bzip2 -cdfq "$i" | $grep $opt "$pat" 2>&1 > /dev/null && echo $i
61
+ r=$?
62
+ elif test $# -eq 1 -o $silent -eq 1; then
63
+ bzip2 -cdfq "$i" | $grep $opt "$pat"
64
+ r=$?
65
+ else
66
+ j=$(echo "$i" | sed 's/\\/&&/g;s/|/\\&/g;s/&/\\&/g')
67
+ j=`printf "%s" "$j" | tr '\n' ' '`
68
+ # A trick adapted from
69
+ # https://groups.google.com/forum/#!original/comp.unix.shell/x1345iu10eg/Nn1n-1r1uU0J
70
+ # that has the same effect as the following bash code:
71
+ # bzip2 -cdfq "$i" | $grep $opt "$pat" | sed "s|^|${j}:|"
72
+ # r=${PIPESTATUS[1]}
73
+ exec 3>&1
74
+ eval `
75
+ exec 4>&1 >&3 3>&-
76
+ {
77
+ bzip2 -cdfq "$i" 4>&-
78
+ } | {
79
+ $grep $opt "$pat" 4>&-; echo "r=$?;" >&4
80
+ } | sed "s|^|${j}:|"
81
+ `
82
+ fi
83
+ test "$r" -ne 0 && res="$r"
84
+ done
85
+ exit $res
miniconda3/envs/active_proaction/bin/bzfgrep ADDED
@@ -0,0 +1,85 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/sh
2
+
3
+ # Bzgrep wrapped for bzip2,
4
+ # adapted from zgrep by Philippe Troin <phil@fifi.org> for Debian GNU/Linux.
5
+ ## zgrep notice:
6
+ ## zgrep -- a wrapper around a grep program that decompresses files as needed
7
+ ## Adapted from a version sent by Charles Levert <charles@comm.polymtl.ca>
8
+
9
+ PATH="/usr/bin:$PATH"; export PATH
10
+
11
+ prog=`echo $0 | sed 's|.*/||'`
12
+ case "$prog" in
13
+ *egrep) grep=${EGREP-egrep} ;;
14
+ *fgrep) grep=${FGREP-fgrep} ;;
15
+ *) grep=${GREP-grep} ;;
16
+ esac
17
+ pat=""
18
+ while test $# -ne 0; do
19
+ case "$1" in
20
+ -e | -f) opt="$opt $1"; shift; pat="$1"
21
+ if test "$grep" = grep; then # grep is buggy with -e on SVR4
22
+ grep=egrep
23
+ fi;;
24
+ -A | -B) opt="$opt $1 $2"; shift;;
25
+ -*) opt="$opt $1";;
26
+ *) if test -z "$pat"; then
27
+ pat="$1"
28
+ else
29
+ break;
30
+ fi;;
31
+ esac
32
+ shift
33
+ done
34
+
35
+ if test -z "$pat"; then
36
+ echo "grep through bzip2 files"
37
+ echo "usage: $prog [grep_options] pattern [files]"
38
+ exit 1
39
+ fi
40
+
41
+ list=0
42
+ silent=0
43
+ op=`echo "$opt" | sed -e 's/ //g' -e 's/-//g'`
44
+ case "$op" in
45
+ *l*) list=1
46
+ esac
47
+ case "$op" in
48
+ *h*) silent=1
49
+ esac
50
+
51
+ if test $# -eq 0; then
52
+ bzip2 -cdfq | $grep $opt "$pat"
53
+ exit $?
54
+ fi
55
+
56
+ res=0
57
+ for i do
58
+ if test -f "$i"; then :; else if test -f "$i.bz2"; then i="$i.bz2"; fi; fi
59
+ if test $list -eq 1; then
60
+ bzip2 -cdfq "$i" | $grep $opt "$pat" 2>&1 > /dev/null && echo $i
61
+ r=$?
62
+ elif test $# -eq 1 -o $silent -eq 1; then
63
+ bzip2 -cdfq "$i" | $grep $opt "$pat"
64
+ r=$?
65
+ else
66
+ j=$(echo "$i" | sed 's/\\/&&/g;s/|/\\&/g;s/&/\\&/g')
67
+ j=`printf "%s" "$j" | tr '\n' ' '`
68
+ # A trick adapted from
69
+ # https://groups.google.com/forum/#!original/comp.unix.shell/x1345iu10eg/Nn1n-1r1uU0J
70
+ # that has the same effect as the following bash code:
71
+ # bzip2 -cdfq "$i" | $grep $opt "$pat" | sed "s|^|${j}:|"
72
+ # r=${PIPESTATUS[1]}
73
+ exec 3>&1
74
+ eval `
75
+ exec 4>&1 >&3 3>&-
76
+ {
77
+ bzip2 -cdfq "$i" 4>&-
78
+ } | {
79
+ $grep $opt "$pat" 4>&-; echo "r=$?;" >&4
80
+ } | sed "s|^|${j}:|"
81
+ `
82
+ fi
83
+ test "$r" -ne 0 && res="$r"
84
+ done
85
+ exit $res
miniconda3/envs/active_proaction/bin/bzgrep ADDED
@@ -0,0 +1,85 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/sh
2
+
3
+ # Bzgrep wrapped for bzip2,
4
+ # adapted from zgrep by Philippe Troin <phil@fifi.org> for Debian GNU/Linux.
5
+ ## zgrep notice:
6
+ ## zgrep -- a wrapper around a grep program that decompresses files as needed
7
+ ## Adapted from a version sent by Charles Levert <charles@comm.polymtl.ca>
8
+
9
+ PATH="/usr/bin:$PATH"; export PATH
10
+
11
+ prog=`echo $0 | sed 's|.*/||'`
12
+ case "$prog" in
13
+ *egrep) grep=${EGREP-egrep} ;;
14
+ *fgrep) grep=${FGREP-fgrep} ;;
15
+ *) grep=${GREP-grep} ;;
16
+ esac
17
+ pat=""
18
+ while test $# -ne 0; do
19
+ case "$1" in
20
+ -e | -f) opt="$opt $1"; shift; pat="$1"
21
+ if test "$grep" = grep; then # grep is buggy with -e on SVR4
22
+ grep=egrep
23
+ fi;;
24
+ -A | -B) opt="$opt $1 $2"; shift;;
25
+ -*) opt="$opt $1";;
26
+ *) if test -z "$pat"; then
27
+ pat="$1"
28
+ else
29
+ break;
30
+ fi;;
31
+ esac
32
+ shift
33
+ done
34
+
35
+ if test -z "$pat"; then
36
+ echo "grep through bzip2 files"
37
+ echo "usage: $prog [grep_options] pattern [files]"
38
+ exit 1
39
+ fi
40
+
41
+ list=0
42
+ silent=0
43
+ op=`echo "$opt" | sed -e 's/ //g' -e 's/-//g'`
44
+ case "$op" in
45
+ *l*) list=1
46
+ esac
47
+ case "$op" in
48
+ *h*) silent=1
49
+ esac
50
+
51
+ if test $# -eq 0; then
52
+ bzip2 -cdfq | $grep $opt "$pat"
53
+ exit $?
54
+ fi
55
+
56
+ res=0
57
+ for i do
58
+ if test -f "$i"; then :; else if test -f "$i.bz2"; then i="$i.bz2"; fi; fi
59
+ if test $list -eq 1; then
60
+ bzip2 -cdfq "$i" | $grep $opt "$pat" 2>&1 > /dev/null && echo $i
61
+ r=$?
62
+ elif test $# -eq 1 -o $silent -eq 1; then
63
+ bzip2 -cdfq "$i" | $grep $opt "$pat"
64
+ r=$?
65
+ else
66
+ j=$(echo "$i" | sed 's/\\/&&/g;s/|/\\&/g;s/&/\\&/g')
67
+ j=`printf "%s" "$j" | tr '\n' ' '`
68
+ # A trick adapted from
69
+ # https://groups.google.com/forum/#!original/comp.unix.shell/x1345iu10eg/Nn1n-1r1uU0J
70
+ # that has the same effect as the following bash code:
71
+ # bzip2 -cdfq "$i" | $grep $opt "$pat" | sed "s|^|${j}:|"
72
+ # r=${PIPESTATUS[1]}
73
+ exec 3>&1
74
+ eval `
75
+ exec 4>&1 >&3 3>&-
76
+ {
77
+ bzip2 -cdfq "$i" 4>&-
78
+ } | {
79
+ $grep $opt "$pat" 4>&-; echo "r=$?;" >&4
80
+ } | sed "s|^|${j}:|"
81
+ `
82
+ fi
83
+ test "$r" -ne 0 && res="$r"
84
+ done
85
+ exit $res