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jblitzar
/
github-python-corpus

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after_filter_list.append(phrase)
if ")" in seg:
after_filter_list.append(''.join(i for i in seg if i == ')'))
return ''.join(after_filter_list)
def find_friend_name(gene_exp, org_question):
seg_list = gene_exp.split()
phrase_set = ["(JOIN", "(ARGMIN", "(ARGMAX", "(R", "(le", "(lt", "(ge", "(gt", "(COUNT", "(AND"]
temp = []
reg_ents = []
for i, seg in enumerate(seg_list):
if not any([ph in seg for ph in phrase_set]):
if seg.lower() in org_question:
temp.append(seg.lower())
if seg.endswith(')'):
stripped = seg.strip(')')
stripped_add = stripped + ')'
if stripped_add.lower() in org_question:
temp.append(stripped_add.lower())
reg_ents.append(" ".join(temp).lower())
temp = []
elif stripped.lower() in org_question:
temp.append(stripped.lower())
reg_ents.append(" ".join(temp).lower())
temp = []
if len(temp) != 0:
reg_ents.append(" ".join(temp))
return reg_ents
def get_right_mid_set(fn, id_dict, question):
type_to_mid_dict = {}
type_list = []
for mid in id_dict:
types = get_types(mid)
for cur_type in types:
if not cur_type.startswith("common.") and not cur_type.startswith("base."):
if cur_type not in type_to_mid_dict:
type_to_mid_dict[cur_type] = {}
type_to_mid_dict[cur_type][mid] = id_dict[mid]
else:
type_to_mid_dict[cur_type][mid] = id_dict[mid]
type_list.append(cur_type)
tokenized_type_list = [re.split('\.|_', doc) for doc in type_list]
# tokenized_question = tokenizer.tokenize(question)
tokenized_question = question.split()
bm25 = BM25Okapi(tokenized_type_list)
top10_types = bm25.get_top_n(tokenized_question, type_list, n=10)
selected_types = top10_types[:3]
selected_mids = []
for any_type in selected_types:
# logger.info("any_type: {}".format(any_type))
# logger.info("type_to_mid_dict[any_type]: {}".format(type_to_mid_dict[any_type]))
selected_mids += list(type_to_mid_dict[any_type].keys())
return selected_mids
def from_fn_to_id_set(fn_list, question, name_to_id_dict, bm25_all_fns, all_fns):
return_mid_list = []
for fn_org in fn_list:
drop_dot = fn_org.split()
drop_dot = [seg.strip('.') for seg in drop_dot]
drop_dot = " ".join(drop_dot)
if fn_org.lower() not in question and drop_dot.lower() in question:
fn_org = drop_dot
if fn_org.lower() not in name_to_id_dict:
logger.info("fn_org: {}".format(fn_org.lower()))
tokenized_query = fn_org.lower().split()
fn = bm25_all_fns.get_top_n(tokenized_query, all_fns, n=1)[0]
logger.info("sub fn: {}".format(fn))
else:
fn = fn_org
if fn.lower() in name_to_id_dict:
id_dict = name_to_id_dict[fn.lower()]
if len(id_dict) > 15:
mids = get_right_mid_set(fn.lower(), id_dict, question)
else:
mids = sorted(id_dict.items(), key=lambda x: x[1], reverse=True)
mids = [mid[0] for mid in mids]
return_mid_list.append(mids)
return return_mid_list
def convz_fn_to_mids(gene_exp, found_names, found_mids):
if len(found_names) == 0:
return gene_exp
start_index = 0
new_string = ''
for name, mid in zip(found_names, found_mids):
b_idx = gene_exp.lower().index(name)
e_idx = b_idx + len(name)
new_string = new_string + gene_exp[start_index:b_idx] + mid
start_index = e_idx
new_string = new_string + gene_exp[start_index:]
return new_string
def add_reverse(org_exp):
final_candi = [org_exp]
total_join = 0
list_seg = org_exp.split(" ")