BEACON
Collection
Official BEACON/RNABenchmark downstream datasets for RNA sequence, structure, and function tasks. • 13 items • Updated
Datasets:
id stringlengths 11 16 | sequence stringlengths 33 498 | dot_bracket stringlengths 33 498 | sequence_length int64 33 498 | target_file stringlengths 34 39 | target_type stringclasses 1
value |
|---|---|---|---|---|---|
bpRNA_CRW_2852 | CCCCGACUCUGGGAUAACUGCUAGAAAUGGUAGCUAAUACCGGAUAUGACGAUUGGCCGCAUGGUUCUGGUGUGGAAAGAAUUUCGGUUGGGGAUGGACUCGCGGCCUAUCAGGUUGUUGGUGAGGUAAUGGCUCACCAAGCCUACGACGGGUAGCCGGCCUGAGAGGGUGACCGCCACACUGGGACUGAGACACGGCCCAACGCAUUAAGUUCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGCGGAUUAAUUCGAUGCAACGCGAAGAACCUUACC... | (((((((.((((....(((((((....))))))).....)))).....((((((((((....)))).)))))).....((...)).)))))))............(((..(.(((..((((((((.......))))))))))).....))))..(.((((((....))))...)))......((((..........))))...................(((......((((....))))....)))...............................................((((........))))............. | 400 | bpRNA/TR0/shard-27/bpRNA_CRW_2852.npy | secondary_structure_pair_matrix |
bpRNA_CRW_7488 | GAGUUUGAUCCUGGCUCAGAACGAACGUUAGCGGCGCGCUUAACACAUGCAAGUCGAGCGAGAAAGGGCUUCGGCCCCGGUACAGCGGCGCACGGGUGAGUAACACGUAGGUAAUCUACCCCCAGGUGGUGGAUAACCUUCCGAAAGGAGGGCUAAUACAGCAUGAGACCACGAUCUCGAAAGGGAAUGGGGUCAAAGCCGGCCUCUUCAUGAAAGCUGGCGCCAGGGGAUGAGCCUGCGGCCCAUCAGCUAGUUGGUGGGGUAACGGCCUACCAAGGCGAUGAUCCGUAGCUGGUCUGAGAGGAUGAUCAGCCACACUG... | (((((.......))))).............(((((((((....(((.(((..(((..(((.....((((....))))......))))))......(((......((((((((..((...(((((((.((((....(((((((....))))))).....)))).............(((....)))............((....................)).)))))))..))))))))))(((..(.(((..((((((((.......))))))))))).....))))..((((((((....))))...))))))).(((... | 484 | bpRNA/TR0/shard-15/bpRNA_CRW_7488.npy | secondary_structure_pair_matrix |
bpRNA_CRW_8497 | UGUGGCGGCGGCCACAGCGGCCGGGGCCACACCCGGGCCACAUCUCGAACCCGGAAGUUAAGCCCGGCCGCGUCCCGGGUGGUACUGCGCUCCGAGAGGGCGCGGGAAGCCCGGGAUGCCGCCGCCGUCCCCC | ......((((((....((((.((((....(((((((..............))))..)))...)))))).)).(((((((...((((((((.((....))))))))))..))))))).)))))).......... | 133 | bpRNA/TR0/shard-16/bpRNA_CRW_8497.npy | secondary_structure_pair_matrix |
bpRNA_CRW_8499 | AUUCCGUAAGUUCGGAUUUGAGGCGGCCAGAGCGGCAGGGAAACACCUGUACCCAUCCCGAACACAGUGGUUAAGUCUGCAAGCGUUGGAGCACGUACUGGAGUGAGAGAUCCUCUGGGAGCGCUUCAUCGCCGCCUUG | .....................((((((....((((((((....(((((((.............))))..)))...)))))).)).(((((((...((((((((.((....))))))))))..))))))).))))))... | 139 | bpRNA/TR0/shard-02/bpRNA_CRW_8499.npy | secondary_structure_pair_matrix |
bpRNA_CRW_8504 | UAGUGGCCCGGCCCGGCCAUAGCGGCCGGGUAACACCCGGACUCAUUUCGAACCCGGAAGUUAAGCCGGCCGCGUUGGAGGCUCCAGUGGGGUCCGAGAGGCCCUGCAGGGGCCUCCAAGCCGGGGCCGGGCCACUA | ...........((((((....((((((((....(((((((.............))))..)))...)))))))).(((((((...((((((((.((....))))))))))...)))))))))))))............ | 137 | bpRNA/TR0/shard-21/bpRNA_CRW_8504.npy | secondary_structure_pair_matrix |
bpRNA_CRW_8510 | AUAGCGGGGGGGCCACACCCGGUCUCAUUUCGAACCCGGAAGUUAAGCCCCCCAGCGAUCCCGGUUGUACUGCCCUCCGAGAGGGGGCGGGAAGCCGGGGACGCCGCCGGCCACUAUUUUCU | ...((((((((....(((((((.............))))..)))...)))))).)).(((((((...((((((((.((....))))))))))..)))))))..................... | 122 | bpRNA/TR0/shard-04/bpRNA_CRW_8510.npy | secondary_structure_pair_matrix |
bpRNA_CRW_8524 | UCGCGGCCAGGGCGGAGGGGAAACACCCGUACCCAUUCCGAACACGGAAGUGAAGCCCUCCAGCGAACCAGCUAGUACUAGAGUGGGAGACCCUCUGGGAGCGCUGGUUCGCCGCCACC | .((((((....((((((((....(((((((.............))))..)))...)))))).)).(((((((...((((((((.((....))))))))))..))))))).))))))... | 119 | bpRNA/TR0/shard-21/bpRNA_CRW_8524.npy | secondary_structure_pair_matrix |
bpRNA_CRW_8513 | AAUAGCGGCCACAGCAGGUGUGUCACACCCGUUCCCAUUCCGAACACGGAAGUUAAGACACCUCACGUGGAUGACGGUACUGAGGUACGCGAGUCCUCGGGAAAUCAUCCUCGCUGCUAUUG | ...((((((....((((((((....(((((((.............))))..)))...)))))).)).(((((((...((((((((.((....))))))))))..))))))).)))))).... | 122 | bpRNA/TR0/shard-03/bpRNA_CRW_8513.npy | secondary_structure_pair_matrix |
bpRNA_CRW_15639 | UCCCUGGUGAAAUUAGCGCUGUGGAACCACCCGAUCCCAUCCCGAACUCGGAAGUGAAACGCAGCUGCGCCGAUGGUAGUGUGGCUCAAGCCAUGCGAGAGUAGGUCAUCGCCAGGGGC | ((((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..(((((((....)))))))..)))))))...)))))))))). | 119 | bpRNA/TR0/shard-24/bpRNA_CRW_15639.npy | secondary_structure_pair_matrix |
bpRNA_CRW_15847 | UAGAGGUUUUUAUUAACUUGGUGGUUUUAGCAAAAAUGAAACACCCGAUCCCAUCUCGAAUUCGGAAGUGAAACUUUUUAGCGCUGAUGGUACUUGAAAAGGGAGAGUAGGUCGCUGCCAAGUUU | ..............((((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..(((....)))..)))))))...)))))))))). | 125 | bpRNA/TR0/shard-19/bpRNA_CRW_15847.npy | secondary_structure_pair_matrix |
bpRNA_CRW_8550 | GGCAACGGUCAUAGCAGCAGGGAAACACCAGAUCCCAUUCCGAACUCGACGGUUAAGCCUGCUGCGUAUUGCGUUGUACUGUAUGCCGCGAGGGUACGGGAAGCGCAAUAUGCUGUUACCACU | ...((((((....((((((((....(((((((.............))))..)))...)))))))).(((((((...((((((((.((....))))))))))..))))))).))))))...... | 123 | bpRNA/TR0/shard-15/bpRNA_CRW_8550.npy | secondary_structure_pair_matrix |
bpRNA_CRW_8533 | NNUUAGCGGCCAUGGCGGCAGGGUUAACUCCUGUACCCAUCCCGAACACAGAAGAUAAGCCUGCCAGCGUUGUAUACGGUACUAAAGUGCGAGAGCCUUUGGGAACUAUACUCCGCUGCUGAUCAAU | ....((((((....((((((((.....(((((((.............))))..)))...)))))).)).(((((((...((((((((.((....))))))))))..))))))).))))))....... | 127 | bpRNA/TR0/shard-14/bpRNA_CRW_8533.npy | secondary_structure_pair_matrix |
bpRNA_CRW_15994 | UUUGCGGUGGUCAUAGCCCUGGUGAGACGCCCGGUCCCAUUCCGAACCCGGUAGCUAAGGCCAGGCGCGGCGAUGGUACUGCACUCGAGAGGGUGUGGGAGAGUAGCACGCCGCCGC | ...(((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....))))))))..)))))))...))))))) | 117 | bpRNA/TR0/shard-16/bpRNA_CRW_15994.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16021 | AGCUUGACGAAUAUAGUUUGUGGGACCAACCUGAAACCAUUCCGAACUCAGAAGUUAAAUCACCUAACGCCUAUGGUAGUAUGAGGUUCUCCUCAUGUGAGAGUAGGUUAUCGUCAGGCUA | ((((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....))))))))..)))))))...)))))))))). | 121 | bpRNA/TR0/shard-01/bpRNA_CRW_16021.npy | secondary_structure_pair_matrix |
bpRNA_CRW_15871 | CCCGGUGGCUAUCGCGGAGGGGCCACACCCGUUCCCUUUCCGAAUACGGUCGUUAAGCCCUCCAGCGCUGAUGGUACUGCUUCGGAGACGAGGUGGGAGAGUAGGACGUCGCCGGGUUAUU | ((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....))))))))..)))))))...))))))))..... | 121 | bpRNA/TR0/shard-12/bpRNA_CRW_15871.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16024 | AUUUUGUCGGCAGGGUCACACCCGUUCCCAUCCCGAACACGGAAGUUAAGCCUGCUGGAGCCGAUGGUACUGCGCGGGUAACUGUGUGGGAGAGUAGGAAGUCGCCGGGAUUAUUAUA | (.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....))))))))..)))))))...)................ | 118 | bpRNA/TR0/shard-15/bpRNA_CRW_16024.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16023 | GUUUCCCGGUGGUUAUAGGGGCAGGGUUCCACCCGUUCCCAUUCCGAACACGGAAGUUAAGCCUGCCACCGCCGAUGGUACUGCAUGCGCAGGUGUGUGGGAGAGUAGGUCACUGCCGGGA | ...(((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....))))))))..)))))))...))))))))) | 121 | bpRNA/TR0/shard-23/bpRNA_CRW_16023.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16029 | UCCGGCGACUAUAGCAUAGGGGCAACACCCGUUCCCAUCCCGAACACGGCAGUUAAGUCCUAUCGCGCCGAUGAUAUUGCGCGGGAGACUAGCGUGAGAAAGUAGGUCAUCGCCGGG | ((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....)).))))))..)))))))...)))))))) | 117 | bpRNA/TR0/shard-01/bpRNA_CRW_16029.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16032 | UGGCGGACAUAGCGAAUUGGACCCACUCCUUUCCAUUCCGAACAGGACAGUGAAACGAUUCUGCGCCGAUGAUAGUGUAGUCUUUUCUACGCGAACGUAGGACACUGCCAGGCU | ((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((......))))))..)))))))...)))))).... | 114 | bpRNA/TR0/shard-03/bpRNA_CRW_16032.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16084 | UUCGGUGGUCAUAGCGUGAGGGAAACGCCCGGUUACAUUCCGAACCCGGAAGCUAAGCCUUACAGCGCCGAUGGUACUGCAGGGGGGACCCUGUGGGAGAGUAGGACGCCGCCGAACAAAUUUUAG | ((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....))))))))..)))))))...)))))))).......... | 126 | bpRNA/TR0/shard-21/bpRNA_CRW_16084.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16119 | AAACUUGGUGGCAUUAGCGCGAUAGUACCACCUGAUGACCAUUCCGAACUCAGAAGUGAAAUGUCGUGGUACCGAUGGUAGUGUGAGGAUUCCUCAUGUGAGAGUAGGGGGCUGCCAAGUUU | .((((((((((.....((((((((....(((((((..............))))..)))...)))))).)).(((((((..((((((((...))))))))..)))))))...)))))))))). | 122 | bpRNA/TR0/shard-11/bpRNA_CRW_16119.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16221 | UUCUUGACGACCAUAGAACAUUGGAACCACCUGAUCCCAUCCCGAACUCAGCAGUGAAACGAUGUAUCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGUCAUCGUCAAGAUU | ((((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((...))))))))..)))))))...)))))))))). | 120 | bpRNA/TR0/shard-25/bpRNA_CRW_16221.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16113 | GGCCUGGUGGUUUUAGCGAAGAGCCUCAACCCGAUCCCAUCCCGAACUCGGCCGUUAAACUCUUCAGCGCCAAUGGUACUAUGGCUUAAGCCCUGGGAGAGUAGGUCGCUGCCAGGCCU | ((((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..(((((((....)))))))..)))))))...)))))))))). | 119 | bpRNA/TR0/shard-17/bpRNA_CRW_16113.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16146 | GUUUGGUGGCAUUAGAGAAAGGGAAAUACCUGAACCCAUUCCGAACUCAGAAGUCAAGCCUUUCAUCGCCGAUGGUACUGCACACAAGAGUGUGGGAGAGUAGGUCGCCGCCAAACU | (((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((.(..(((.((((....)))))))..))))))...))))))))). | 117 | bpRNA/TR0/shard-20/bpRNA_CRW_16146.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16263 | ACGCUUGGUGGUCAUAGCACUUUGGACCCACCCCUUCCCAUCCCGAACAGGGUCGUGAAACGAAGUCGCGCCGAUGAUAGUGUGUUUUCACAUGCGAAAGUAGGUCACUGCCAGGCAC | .((((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((....))))))..)))))))...)))))))))). | 118 | bpRNA/TR0/shard-23/bpRNA_CRW_16263.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16264 | CUUGGGGACAAUAGCAAGAUGGAACCACCUGAUCCCUUUCCGAACUCAGAAGUGAAACGUCUUAGCGCCGAUGGUAGUGUGUCAGGUGGCAUGUGAGAGUAGGUCAUCCCCAAGC | ((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..(((((((....)))))))..)))))))...)))))))). | 115 | bpRNA/TR0/shard-06/bpRNA_CRW_16264.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16292 | CGACCUGGUGGUAAUGGCAGGGGGUCCCCACCGGAUCCCAUCCCGAACUCCGUCGUUAAGCCCCCUUGCGCCGAUGGUACUACGUCUUAAGGCGUGGGAGAGUAGGUCGCUGCCGGGUC | .((((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..(((((((....)))))))..)))))))...)))))))))) | 119 | bpRNA/TR0/shard-04/bpRNA_CRW_16292.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16293 | CUGGUGGCUAUAGCGCGGGGGAAACACCUCUUCUCAUUUCGAACAGAGAAGUUAAGUCCCGCAGCGCCGAUGGUACUGGCCGUUGGCCGGUAGAGUAGGACGUUGCCAGG | (((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((...))))))..)))))))...))))))). | 110 | bpRNA/TR0/shard-29/bpRNA_CRW_16293.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16283 | CUAGGUGGCUAUAGAGAGAGGGAAACGCCUGGUCCCAUUCCGAACCCAGAAGCUAAGCCUCUCAUCGCUGAUAAUACUGAUCCUUGCAGGAUUGGAAAUGUAGGUCGCUGCCUAGU | ((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((...))))))))..)))))))...)))))))). | 116 | bpRNA/TR0/shard-25/bpRNA_CRW_16283.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16299 | CUAGUGAUAAUAGCGAAAGUGAAACACUCGACUCCAUUCCGAACUCGAAAGUGAAACCUUUUUGCGCCGAUGGUACUGCUUGUGUGGGAGAGUAGGUGGUUGCUAGGUCC | (((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((....))))..)))))))...))))))).... | 110 | bpRNA/TR0/shard-08/bpRNA_CRW_16299.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16389 | GCCGGUGAUCAUACCGCGUGGGAAACACCCGUUCCCAUCCCGAACACGGAAGUUAAGCCACGCUGGGCCGAUUGUACUGCACGCGAAAGUGUGUGGGAGAGUAGGUCGUCGCCGACA | ((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....))))))))..)))))))...)))))))). | 117 | bpRNA/TR0/shard-05/bpRNA_CRW_16389.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16478 | CUGGGUGACCUUAGCGAGGAGGACCCACCCGUUCCCAUCCCGAACACGGUAGUUAAGCUCCUCAGCCCCAAUGGUACUGCACGCGCAAGUGUGUGGGAGAGUAGGACGUCGCCCGGU | ((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....))))))))..)))))))...)))))))). | 117 | bpRNA/TR0/shard-23/bpRNA_CRW_16478.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16579 | UUUGUCGGUGGUUGUUAGCGGUGGGGUCACGCCCGGUCCCUUUCCGAACCCGGAAGCUAAGCCUACCUGCGCUGAUGGUACUGCACCUGGGAGGGUGUGGGAGAGUAAGUCACCGCCGAC | ...((((((((......((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....))))))))..)))))))...)))))))) | 120 | bpRNA/TR0/shard-14/bpRNA_CRW_16579.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16548 | UCUGGUGGCAAUAACGAGAAGGAAACACCCGUUCCCAUUCCGAACACGGUAGUUAAGCUUCUCAGUGCCGAUGAUACUAGGAUGGAGACGUCCUGGGAAAGUAGGUCGCUGCCAGAU | ((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....))))))))..)))))))...)))))))). | 117 | bpRNA/TR0/shard-18/bpRNA_CRW_16548.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16541 | CCUGAUGACCAUAGCAAGUUGGUCCCACUCCUUCCCAUCCCGAACAGGACAGUGAAACGACUUCGCGCCGAUGAUAGUGCGGGUUCCCGUGUGAAAGUAGGUCAUCGUCAGGCUCUUACAGCCCAAACCGCCC | ((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((....))))))..)))))))...))))))))..................... | 133 | bpRNA/TR0/shard-08/bpRNA_CRW_16541.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16481 | GGCGGCGGUAAGAGCGAGGAGGAAACACCCGUUCCCAUCCCGAACACGGUCGUUAAGCUCCUCUGCGCCGAUGGUACUGCGCGGGAAGCUGCGUGGGAGAGUAGGGCAUCGCCGCCC | ((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....))))))))..)))))))...)))))))). | 117 | bpRNA/TR0/shard-16/bpRNA_CRW_16481.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16582 | UGCUUGGUAACAAUAGCGUUUUGGACCCACCUGACCCCAUGCCGAACUCAGUAGUGAAACGAAACAGCGCCGAUGAUAGUGUAGCAUUUGCUAUGUGAAAGUAGGACAUUGCCAGGC | .(((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..(((((((....)))))))..)))))))...))))))))) | 117 | bpRNA/TR0/shard-08/bpRNA_CRW_16582.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16610 | AAAGUUUGUAUUGCUAGCUUGGUGGUUAUAGCAUGAGUGAAACACACGAUCCCAUCCCGA | ............................................................ | 60 | bpRNA/TR0/shard-27/bpRNA_CRW_16610.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16617 | UUUGGCGAUAAUAGCUUGUAGGAACCACCUGAUCCCAUUCCGAACUCAGAAGUGAAACUACAAUAGCGCCGAUGAUAGUCUGGCAAUGCCCAGUAA | .............((((((((....(((((((.............))))..)))...))))))..)).......(..((.((((...).))))).) | 96 | bpRNA/TR0/shard-14/bpRNA_CRW_16617.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16680 | CCGGCGGCCUGAGCGGUGUGCCAGAACCCGAUCCCAUCUCGAACUCGGCCGUUAAACACACCAGCGCCCAUGGUACUGUGCUCCAAGACACGGGAGAGUCGGUCGCCGCCAGGCU | (((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..(((((((....)))))))..)))))))...))))).)).. | 115 | bpRNA/TR0/shard-26/bpRNA_CRW_16680.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16655 | GGACCUGGUGGCCAUUGCGAGGGCCCUACACCCGAUCCCUUCCCGAACUCGGCCGUGAAAUCCCUCAGCGCCUAUGAUACUGCACCUCAAGGUGCGGAAAAGUCGGUCGCCGCCAGGUCC | .((((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..(((((((....)))))))..)))))))...)))))))))). | 120 | bpRNA/TR0/shard-02/bpRNA_CRW_16655.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16709 | UUCCGGUGGUGAUAUCAAGAAGGCUACACCCGAUCCCAUACCGAACUCGGAAGUUAAGCUUCUUGGAGCCGAUGGUACUGCCAGGGCAACCUGGUGGGAGAGUAGGACGCCGCCGGGAC | (((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((....))))))))..)))))))...))))))))). | 119 | bpRNA/TR0/shard-05/bpRNA_CRW_16709.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16767 | UCCUCGGGACCAUAGCGGAGGGGAAACACCCGGUUUCCAUUCCGAACCCGGCAGUUAAGCCCUCCAGCGCCGAUGAUACUGUGCCGGGCGAACGGCACGGGAAAGUAGGUCGUCCCGGGGGUU | (((((((((.....((((((((....(((((((..............))))..)))...)))))).)).(((((((..((((((((......))))))))..)))))))...))))))))).. | 123 | bpRNA/TR0/shard-17/bpRNA_CRW_16767.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16771 | UGGUUGGUGAUUACAGAGAAAAGGUCACACUCAGCUCCAUUUCGAACCUGAAAGUUAAGCUUUUCUUCGUCGAUAAUACUGCCCCCUACGGGGGUGGGACGGUAGAUCGUUGCCAACCAU | ((((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..((((((((...))))))))..)))))))...)))))))))). | 120 | bpRNA/TR0/shard-14/bpRNA_CRW_16771.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16799 | UUGCUUGGUGGCUAUAGCGUCUGUGACCCACCCGAUCCCAUCUCGAACUCGGCCGUGAAACCGGACUGCGCCGAUGGUACUAGUGCUUCAAGCACUGGAAGAGUAGGUCGUCGCCAGGCAU | .((((((((((.....((((((((....(((((((.............))))..)))...)))))).)).(((((((..(((((((.....)))))))..)))))))...)))))))))). | 121 | bpRNA/TR0/shard-31/bpRNA_CRW_16799.npy | secondary_structure_pair_matrix |
bpRNA_CRW_16874 | UCCUGGCGACCAUAGCUGUUUGGUACCACCUGAUACCUUUCCGAACUCAGUAGUGAAACAAACACGCGCUGAUGAUAGUGUGGGGUCUCCCC | ..............((((((((....(((((((.............))))..)))...)))))).))..............((((...)))) | 92 | bpRNA/TR0/shard-26/bpRNA_CRW_16874.npy | secondary_structure_pair_matrix |
bpRNA_CRW_17850 | UGGGAAUACCAGGUGCUGUAAGCCUUUUCACAGAAUUUUUC | ......................................... | 41 | bpRNA/TR0/shard-00/bpRNA_CRW_17850.npy | secondary_structure_pair_matrix |
bpRNA_CRW_17885 | UGUAGGUACUGGAACAGCGAAAACGGCUGGCAAUACCAGGUGCUGUAGGCGUUUUC | ((......(((((..(((....)))))))).....))................... | 56 | bpRNA/TR0/shard-00/bpRNA_CRW_17885.npy | secondary_structure_pair_matrix |
bpRNA_CRW_17929 | UUACAGCCAUACCACCCUGAACUUGGAAGCUAAGCAGGGUUGGGUCUGGUUAGCACUUGGAAGGGAGG | ...(((((((............))))..)))..................................... | 68 | bpRNA/TR0/shard-30/bpRNA_CRW_17929.npy | secondary_structure_pair_matrix |
bpRNA_CRW_17940 | GUCUAUGGCCAUACCACCCUGAACACACCCGACCUUAUCUGAUCUUGGAAGCUCGACAGGGUCAGGCCUGAUUAAUACUUGGAUGGGAAA | .............((((((((....(((((((............))))..)))...)))))).))......................... | 90 | bpRNA/TR0/shard-03/bpRNA_CRW_17940.npy | secondary_structure_pair_matrix |
bpRNA_CRW_17927 | GACUACAGUCCCAUACCACCCUGAAAGUGCUCAAUCUGGUCUGAUUUCGGAAGUUAAGCAGGGUCGGGCUUGGUCAGUACUUAGAUGGAAGA | ...............((((((((....(((((((............))))..)))...)))))).))......................... | 92 | bpRNA/TR0/shard-06/bpRNA_CRW_17927.npy | secondary_structure_pair_matrix |
bpRNA_CRW_18254 | GCUUAGCGUCAUACCGCGUAGAAUAAACCAGUUCUCGUCCGAUCACUGAAGUCAAACUACGACGGGCGGGGUUAGUACUUACAUGGGUGACCGGUUGGGAAUACCUCGUGCGCUAAGCAUUUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).)))))))))..... | 123 | bpRNA/TR0/shard-04/bpRNA_CRW_18254.npy | secondary_structure_pair_matrix |
bpRNA_CRW_18445 | GCCUGCGGCCACACAACCUUGAAUAAGCCUGAUCUCAGAAGCUAAGCAACGUUGGGCUUGGUUAGUACUUGGAUGGGAGACCACCUGGGAAUAUCAAGUGCUGUAGGCAUU | (((((((((....((((((((....(((((((..))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).)))))))))... | 111 | bpRNA/TR0/shard-24/bpRNA_CRW_18445.npy | secondary_structure_pair_matrix |
bpRNA_CRW_18524 | GUAGACGGCCAUCUUAGGCUGAAAGCACCGUAUCCCGUCUGCUCUGCGAAGUUAAGCAGCCUCAAGCUCGGGUAGUACUCGGGUGGGUGACCACCGGGGAAGUCCGGGUGCUGUCUACUUUUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).)))))))))..... | 123 | bpRNA/TR0/shard-06/bpRNA_CRW_18524.npy | secondary_structure_pair_matrix |
bpRNA_CRW_18575 | AGGUGCGACCAUACCGUGUUGAAAAUUCUGCAUCCCGUCCGAUCUGCAAAGACAAGCAACACAGGGCCCAGUCAGUAGUGCGGUGGGUGACCACGUGCGAAUACUGUGGUGUUGCACUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....)))))..))))))))) | 119 | bpRNA/TR0/shard-04/bpRNA_CRW_18575.npy | secondary_structure_pair_matrix |
bpRNA_CRW_18529 | GGGUGCGAUCAUACCAGCACUAAUGCCCUCCUGGGAAGUCCUCGUGUUGCACCCCU | (((((((((....................................))))))))).. | 56 | bpRNA/TR0/shard-01/bpRNA_CRW_18529.npy | secondary_structure_pair_matrix |
bpRNA_CRW_18842 | GAGUACGACCAUACUUGAGUGAAAGCACCAUAUCCCGUCCGAUUUGUGAAGUUAAGCACCCACAGGCUUAGUUAGUACUGAGGUCAGUGAUGACUCGGGAACCCUGAGUGCCGUACUCCCAACUUCUUUUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).)))))))))............. | 131 | bpRNA/TR0/shard-21/bpRNA_CRW_18842.npy | secondary_structure_pair_matrix |
bpRNA_CRW_18570 | GACCAACGGCCAUACCACGUUGAAAGUACCCAGUCUCGUCAGAUCCUGGAAGUCACACAACGUCGGGCCCGGUCAGUACUUGGAUGGGUGACCGCCUGGGAACACCGGGUGCUGUUGGUAU | .(((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))).. | 121 | bpRNA/TR0/shard-29/bpRNA_CRW_18570.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19096 | AGGAACGGCCAUACCACGCCGAUCGCACCAUAUCCCGUCCGCUCUGUGAAGUUAAGCGGCGUCGGGCCAGGCUAGUACUACGGUGGGGGACCACGUGGGAAGCCCUGGUGCUGUUCCU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))) | 118 | bpRNA/TR0/shard-09/bpRNA_CRW_19096.npy | secondary_structure_pair_matrix |
bpRNA_CRW_18870 | GUCUACAGCCAUAUCACGUUGAAAACACCGGUNNNCGUCCGAUCACCGAAGUUAAGCAACGUAGAGCUUGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACCAGGUGUCGUAGACUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))).. | 120 | bpRNA/TR0/shard-03/bpRNA_CRW_18870.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19063 | AAGCUACGGCCAUAUAAUACCGAAAGCACCGGAUCCCGUCCGAUCUCCGCAGUUAAACGGUAUAUAGAUCAGUCAGUACUAUGGUGGGGGACCACAUGGGAAUACUGGUUGCUGUAGUUU | (.((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).)))))))).) | 120 | bpRNA/TR0/shard-10/bpRNA_CRW_19063.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19000 | ACAUACGACCAAAGCUCGUAGAGAAUACGGGGUCCCGUCCGCUCCCCCAUCGUCAAGCUGCGAAGCGCUGGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCCAGUGUUGUAUGU | (((((((((....((((((((....(((((((............))))...)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))) | 119 | bpRNA/TR0/shard-15/bpRNA_CRW_19000.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19098 | AUGGUCGUUCAUACUAGCACUACUGCACCCUAACCCGUCAGAUCUAGGAAGUUAAGCGUGCUCAGGCGAGGCCAGUAGUACGGUGGGUGACCACGUGCGAAGCCCUCGUGACGAUCGU | (.(((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))).) | 118 | bpRNA/TR0/shard-00/bpRNA_CRW_19098.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19097 | UUCUGUACGGUCAUACCUGGUUGGAAACGGCGGAUCCCGUCCGAUCUCCGAAGCUAAGCAACCAUGGGCGUGUCUAGUACUCAGGUGGGGGACCACUGGGGAAGCGCNNNACGUACUGUACAGC | ..(((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))...))).))))))))). | 124 | bpRNA/TR0/shard-07/bpRNA_CRW_19097.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19109 | AGCUGGGGCCAUAUGAACCUAUAAGUACCGCAUCCCGUCCCGAUCUGCGAAGUCAAGCAGGUUACAGCUCGGUUAGUACUAUGAUGGGAGACCACAUGGGAAUACCGGGUGUCCCAGCUU | (((((((((....((((((((....(((((((.............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).)))))))).) | 120 | bpRNA/TR0/shard-28/bpRNA_CRW_19109.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19104 | GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCUGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCUUUUU | (((((((((....((((((((....(((((((............))))...)))...)))))).)).(((((.......(((((.(((....)))))))).....))))).)))))))))..... | 125 | bpRNA/TR0/shard-21/bpRNA_CRW_19104.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19108 | ACAUACGACCAUAGACAGCUGAAAAUACGGCAUCCCGUCCGCUCUGCCCGAGUCAAACAGCUGAUCGCCAGACUAGUACUCAGGUGGGUGACCACUGGGGAAUCCCUGGUGUUGUAUGUUU | (((((((((....((((((((....(((((((............))))...)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))).. | 121 | bpRNA/TR0/shard-23/bpRNA_CRW_19108.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19118 | GCAAUCGGCCAUACUACAUCGAAUAUACCGGAUCCCAUCAGAACUCCGAAGUCAAGCGGUGUAAGGUUCGGUUAGUACUAGGGUGGGGGACCACCUGGGAAGACCAGAAUGUCGAUCGCCUCCC | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....)).))).)))))))))..... | 124 | bpRNA/TR0/shard-17/bpRNA_CRW_19118.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19141 | GUACGAUCAUACUUGGCCGUAAGCACCCGUUCUCAGCCGACCACGGAAGUUAAGCGGUUAUAGGCUGUGUUAGUACUUGGCUGGGUGACCGCCUGGGAACUCACAGUGUCGUACUU | (((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))).. | 116 | bpRNA/TR0/shard-26/bpRNA_CRW_19141.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19137 | GUAUACGGCCAUACUAGGUUGGAAACACAUCAUCCCGUUCGAUCUGAUAAGUAAAUCGACCUCAGGCCUUCCAAGUACUCUGGUUGGAGACAACAGGGGAACAUAGGGUGCUGUAUACU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))). | 119 | bpRNA/TR0/shard-19/bpRNA_CRW_19137.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19132 | GUGUACGGCUAUACUACCGGAAAAGCGCCCGUUCCCGUCCGAUUACGAGAGCCUAGCCCGGUCAGGCCCGACUAGUACUAGGGUGGGGGACCACCUGGGAACAUCGGGUGCUGUACACU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))). | 119 | bpRNA/TR0/shard-22/bpRNA_CRW_19132.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19131 | AAGUUACGGCCACAUCAUCGUGAAAAGACCAAAUCCCGUCCGAUCUUUGCAGUCAAACACGAUCGAGCUUCGUCAGUACUAUGGUGAGAGAUCACAUGGGAAUACGAAGUGCUGUAAUUU | (.((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).)))))))).) | 120 | bpRNA/TR0/shard-31/bpRNA_CRW_19131.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19191 | GCUUACGGCCAUACCAGCCUGAAUACGCCCGAUCUCGUCCGAUCUCGGAUCCCAAGCAGGUAAGGGCCUGGUCAGUACUUGGAUGGGAGACCGCCUGGAAAUAUCAGGUGCUGUAAGCUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))).. | 120 | bpRNA/TR0/shard-00/bpRNA_CRW_19191.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19481 | GAUUACGGCCAUAUCCACGGAAAAGCACCGGAACUCGUCAGAUCUCCGAAGUUAAGCCCGUGCGAGCCUGGGUAGUACUGAGAAGGGAGACCGCUCGGGAAUACCGGGUGCCGUAAUCUU | .((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))... | 120 | bpRNA/TR0/shard-20/bpRNA_CRW_19481.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19472 | GUCGACGCUCAUACUAGGUUGGGUCCACCCGAUCUCGUUCGAUCUCGGCAGUUAAACAACCUUAGGCCUCGUUAGUACUUGAAUGCGUGAGCGUCUGGGAAUACGAGGUGGUGUCGACUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))).. | 120 | bpRNA/TR0/shard-00/bpRNA_CRW_19472.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19718 | ACAUUCGGCCAUAUCAAGUUGACAAACGCCGUAUCCCAUCCCGAACUACGAAGCUAAGUCACUUUGAGCUGGGCUAGUACUGAGAUGAGGGAUCGGUCUGGAAUCCCCAGUGCUGUAUGUU | (((((((((....(((((.(((....(((((((.............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))). | 121 | bpRNA/TR0/shard-27/bpRNA_CRW_19718.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19693 | GCUAUCGGCCAUACUAAGCCAAAUGCACCGGAUCCCAUCCGAACUCCGAAGUUAAGCGGUUUAAGGCCUGUUAAGUACUGAGGUGGGGGACCACUCGGGAACUUCAGGUGCUGAUAGCUUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).)))))))))... | 121 | bpRNA/TR0/shard-10/bpRNA_CRW_19693.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19740 | AUCUACGGCCAUACCACAUUGAGAGCACCCGAUCUCGUUCGAUCUCGGAAGUUAAGCAAUGUAGGGAUCAGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACUGGUUGCUGUAGAAA | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))). | 119 | bpRNA/TR0/shard-19/bpRNA_CRW_19740.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19732 | GUAUACGGUCAUACCCGUGGCACACGCAGGCGAACCCAUCUCGAAUUCGCAACUUAAGCGCACGUGGGCUUGGUCAGUACUGGGGUGAGGGAUCACCCGGGAACCCCAAGUGCCGUAUGC | (((((((((....((((((((.....(((((((.............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))) | 120 | bpRNA/TR0/shard-07/bpRNA_CRW_19732.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19803 | AUCCACGGCCAUAGGACACAGAAAACAUCGCAUCCCGUCCGAUCUGCGCAAUCAAGCUGUGUACCGCCCAGUCAGUACCGGAGUGGGGGACCAUCCGGGAAUCCUGCCAGGUGCUGUGGUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....)))...)).))))))))) | 121 | bpRNA/TR0/shard-06/bpRNA_CRW_19803.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19813 | AAAUUACGGCCAUACACAGGAGAAAGCUCCGCAUCCCGUUCGAUCUGCGCAGAUAACCUCCUGAUGGCAGGGUCAGUACUAUGGUGGGGGACCACAUGGGAAUACCCUGUGCUGUAAUUU | (.((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).)))))))).) | 120 | bpRNA/TR0/shard-10/bpRNA_CRW_19813.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19840 | ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU | (((((((((....((((((((....(((((((............))))...)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))). | 120 | bpRNA/TR0/shard-03/bpRNA_CRW_19840.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19848 | AUGGUACGGUCAUACCACGGCUAAUGCGCCCGAUCCCAUCCGAACUCGGAAGCCAAGCGCCGUUGGGCCGGAAUAGUACUGGGAUGGGUGACCUCCUGGGAAGUCCCGGUGCUGUACCUAU | (.((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))).. | 121 | bpRNA/TR0/shard-04/bpRNA_CRW_19848.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19850 | GAUACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUACUAAGAAGGGAGACCACUUGGGAACGUUGGGUGCUGUAUUU | ((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).)))))))). | 117 | bpRNA/TR0/shard-12/bpRNA_CRW_19850.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19922 | AAUCUACGGCCAUACAGAUAGUAACACACCGGAUCCCGUCUGAUCUCCGCAGUUAAGUCUCUCCUGGUAGCGUCAGUACUAUGGUGGGGGACCACAUGGGAAUACGCUAUGUCGUAGGUU | (.((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).)))))))).) | 120 | bpRNA/TR0/shard-15/bpRNA_CRW_19922.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19918 | GUGAUGCGUUCAUACUACUUCGAAAGCACCCGAUCCCAUCAGAACUCGGAAGUUAAGCGGAGUUAGGCCGGUCUAGUACUGAGUUGAGUGAUCACUCGGGAAUCACCGGUGACGCAUUGC | (.((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))). | 120 | bpRNA/TR0/shard-28/bpRNA_CRW_19918.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19929 | GGAUGCGGCCAUACUAAGGAGAAAGCACCUCAUCCCGUCCGAUCUGAGAAGUUAAGCUCCUUCAGGCGUGGUUAGUACUGGGGUGGGGGACCACCUGGGAAUCCCACGUGCUGCAUUCUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))).. | 120 | bpRNA/TR0/shard-17/bpRNA_CRW_19929.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19937 | AGUUACGGCCAUACCUCAGAGAAUAUACCGUAUCCCGUUCGAUCUGCGAAGUUAAGCUCUGAAGGGCGUCGUCAGUACUAUAGUGGGUGACCAUAUGGGAAUACGACGUGCUGUAGCUUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))).. | 120 | bpRNA/TR0/shard-08/bpRNA_CRW_19937.npy | secondary_structure_pair_matrix |
bpRNA_CRW_20037 | AAUGUCUACGGCCAUACCUAGGCGAAAACACCAGUUCCCGUCCGAUCACUGCAGUUAAGCGUCUGAGGGCCUCGUUAGUACUAUGGUUGGAGACAACAUGGGAAUCCGGGGUGCUGUAGGCCU | ...(((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))).. | 123 | bpRNA/TR0/shard-22/bpRNA_CRW_20037.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19946 | ACGUGCGGCCAUAGUGCAGGAACAUGCGCCGAAACCCAUCCCGAAUUUCGAAGCUAAGCUCCGCCACGCACGAUUAGUACUCUGGAGGGGGACCUCAGUGGAAUCUCGUGUGCCGCAUGUU | (((((((((....(((((.(((....(((((((.............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))). | 121 | bpRNA/TR0/shard-07/bpRNA_CRW_19946.npy | secondary_structure_pair_matrix |
bpRNA_CRW_19939 | AUGCUACGUUCAUACCACUCAGAAAACGCCGGGUCCCAUCAGAUCCCCGAAGCUAAGCUGAGUUGGGCUGGAUUAGUACUGGAUUCAGGAAUGAUCUGGGAAUCCCCAGUGACGUAGUGU | (.((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))). | 120 | bpRNA/TR0/shard-13/bpRNA_CRW_19939.npy | secondary_structure_pair_matrix |
bpRNA_CRW_20067 | AUCUGCGGCCAUACCGCGAUGAACCCUCCGCGUCUCGUCCGAUCCGCGCAGAUAAGCAUCGCAGGGGCCAGAGAGUAUUGACGUGGGUGACCAGUCGAGAACACUGUGCUGCCGCAGGU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....)))))..))))))))) | 119 | bpRNA/TR0/shard-09/bpRNA_CRW_20067.npy | secondary_structure_pair_matrix |
bpRNA_CRW_20077 | ACAGCCGUUCAUACCACACGGAGAAUACCGGAUCUCGUUCGAACUCCGCAGUCAAGCCGUGUCGGGCGUGCUCAGUACUACCAUAGGGGACUGGGUGGGAAGCGUGCGUGACGGCUGUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))). | 119 | bpRNA/TR0/shard-11/bpRNA_CRW_20077.npy | secondary_structure_pair_matrix |
bpRNA_CRW_20939 | GGGGAUGUAGCUCAGUGGCAGAGUGCAUACUUUGCAUGUAUGAGUUACCUGGGUGAAAACUCCAGUAUCUCCA | (((((((..((((.......))))((((((.......)))))).....(((((.......)))))))))))). | 73 | bpRNA/TR0/shard-24/bpRNA_CRW_20939.npy | secondary_structure_pair_matrix |
bpRNA_CRW_20102 | AUCCGCGGCCAUAGGAUCAGGAAAGCACCGCAUCCCGUCCGAUCUGCGAAGUUAAGCCUGAUACCGCCGAGUUAGUACUAAGGUAGGGGACUACUUGGGAAUCCUGGGUGCUGCGGUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))) | 118 | bpRNA/TR0/shard-20/bpRNA_CRW_20102.npy | secondary_structure_pair_matrix |
bpRNA_CRW_20738 | GGGGGAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCACCA | (((((((..((((........))))((((((.......))))))....(((((.......)))))))))))).... | 76 | bpRNA/TR0/shard-17/bpRNA_CRW_20738.npy | secondary_structure_pair_matrix |
bpRNA_CRW_20119 | AUCCUCGGCCAUAGAAUGACGAAAACGACGCGUCCCGUCCGAUCUGCGAAUCUAAGCGUCGUAUCGCUAGGUUAGUACCAAGGUGGGGGACCACUUGGGAAUCCCUAGUGCCGAGGUU | (((((((((....((((((((....(((((((............))))..)))...)))))).)).(((((......(((((.(((....)))))))).....))))).))))))))) | 118 | bpRNA/TR0/shard-23/bpRNA_CRW_20119.npy | secondary_structure_pair_matrix |
bpRNA_CRW_20946 | GGGGAUGUGGCUCAGUGGGUAGGGUGCUCGCCUAGCAUGUGUGAAGCCCUGGGUUCGAGCCCCGGCAUCUUCA | (((((((..((((........))))((((((.......))))))....(((((.......)))))))))))). | 73 | bpRNA/TR0/shard-12/bpRNA_CRW_20946.npy | secondary_structure_pair_matrix |
bpRNA_CRW_20947 | GGGUGUCGCUCAGUUGGUAGAGUGCUUGCCUGGCAUGCAAGAAACCUUGGUUCAAUCCCCAGCACUGCA | ((.((..((((........))))((((((.......))))))....((((........))))))))... | 69 | bpRNA/TR0/shard-31/bpRNA_CRW_20947.npy | secondary_structure_pair_matrix |
bpRNA_CRW_21151 | GGGUCUGUGGCGCAGCUGGUAGCGCACCUGCAUGGCAUGCAGGGGGUCAGGGGUUCGAGUCCCCUCAGAUCCACCAUGA | (((((((..((((........))))((((((.......))))))....(((((.......))))))))))))....... | 79 | bpRNA/TR0/shard-06/bpRNA_CRW_21151.npy | secondary_structure_pair_matrix |
End of preview. Expand in Data Studio
BEACON — Secondary_structure_prediction
RNA secondary-structure prediction data with nucleotide-level pair matrices.
Official data from the shared BEACON/RNABenchmark Drive folder:
https://drive.google.com/drive/folders/19ddrwI8ycvIxkgSV3gDo_VunLofYd4-6?hl=en.
This repository is the standardized Hugging Face publication of the official
task data. The data/ directory is the canonical viewer-friendly layer, and
the original file contents and source names are preserved for reproducibility.
For SSP, .npy targets are deterministically sharded into subdirectories to
comply with the Hugging Face 10,000-files-per-directory limit; the original
unsharded layout remains available in the GPUHub raw staging area.
beacon_manifest.json records source file IDs, checksums, sizes, split counts,
schema, and processing notes. Interrupted-upload artifacts ending in
.partial are retained only in the GPUHub raw staging area and excluded from
the published repository.
Canonical splits
| Split | Rows | File |
|---|---|---|
| train | 10814 | data/train.parquet |
| validation | 1300 | data/validation.parquet |
| test | 1305 | data/test.parquet |
Standardized schema
| Field | Arrow type |
|---|---|
id |
string |
sequence |
string |
dot_bracket |
string |
sequence_length |
int64 |
target_file |
string |
target_type |
string |
Standardization notes
- Canonical split names are train, validation, and test; source val.csv/val_1.json is published as validation.
- The official raw directory tree is preserved alongside the standardized data/*.parquet files.
- Source file names and target paths are retained in beacon_manifest.json for provenance.
- Parquet rows retain sequence, dot-bracket annotation, sequence length, and the raw pair-matrix target path.
- SSP .npy targets are deterministically sharded under bpRNA/{TR0,VL0,TS0}/shard-XX to satisfy the Hugging Face 10,000-files-per-directory limit; source filenames and contents are unchanged.
Usage
from datasets import load_dataset
dataset = load_dataset("jiahaozhang2003/beacon-secondary-structure")
Reproducibility
This repository was generated on GPUHub from the public Drive source with the RiboLoop downstream benchmark data-staging script. No model outputs or training artifacts are included.
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