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pfam_gap_rates/2-Hacid_dh_C.gap.json

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+{"family": "2-Hacid_dh_C", "n_seqs": 5000, "length": 204, "gap_rates": [0.5712, 0.2572, 0.2054, 0.1784, 0.1692, 0.1652, 0.1622, 0.1578, 0.1556, 0.1548, 0.1528, 0.1522, 0.15, 0.1476, 0.1452, 0.1436, 0.1406, 0.138, 0.1362, 0.1336, 0.131, 0.1326, 0.122, 0.765, 0.906, 0.945, 0.9182, 0.8824, 0.6622, 0.5534, 0.291, 0.233, 0.101, 0.0888, 0.0774, 0.07, 0.0642, 0.0576, 0.052, 0.0476, 0.0448, 0.0416, 0.04, 0.0392, 0.0388, 0.039, 0.0384, 0.0374, 0.0374, 0.0368, 0.0366, 0.037, 0.0368, 0.0368, 0.0362, 0.0364, 0.036, 0.0354, 0.035, 0.0348, 0.0346, 0.0342, 0.9294, 0.0342, 0.0344, 0.0344, 0.033, 0.0334, 0.0332, 0.0332, 0.0334, 0.0334, 0.0336, 0.0334, 0.0338, 0.035, 0.039, 0.0944, 0.1252, 0.1468, 0.906, 0.8786, 0.6438, 0.274, 0.2082, 0.1524, 0.1596, 0.099, 0.1016, 0.8918, 0.0628, 0.0482, 0.044, 0.9242, 0.0404, 0.0388, 0.039, 0.0386, 0.0376, 0.0376, 0.037, 0.0434, 0.0352, 0.0348, 0.0348, 0.0344, 0.0346, 0.0352, 0.0394, 0.041, 0.0416, 0.0562, 0.0586, 0.0562, 0.057, 0.0566, 0.047, 0.0444, 0.0432, 0.043, 0.043, 0.0434, 0.0428, 0.043, 0.0426, 0.042, 0.041, 0.04, 0.0406, 0.045, 0.0412, 0.0428, 0.042, 0.0418, 0.0418, 0.0426, 0.0436, 0.0442, 0.0506, 0.0512, 0.051, 0.0518, 0.0516, 0.0508, 0.0504, 0.0506, 0.0512, 0.051, 0.0516, 0.0518, 0.0526, 0.0534, 0.0532, 0.0528, 0.0558, 0.0564, 0.056, 0.056, 0.0944, 0.0564, 0.0574, 0.0576, 0.058, 0.061, 0.0884, 0.0904, 0.0922, 0.098, 0.9034, 0.9042, 0.9066, 0.9112, 0.9154, 0.9442, 0.9136, 0.908, 0.9052, 0.904, 0.8978, 0.0944, 0.1114, 0.101, 0.1808, 0.1178, 0.8986, 0.9428, 0.9146, 0.8922, 0.2948, 0.0864, 0.0832, 0.0826, 0.0838, 0.0836, 0.0838, 0.084, 0.0918, 0.088, 0.0882, 0.089, 0.0892, 0.0954, 0.1024, 0.1496], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/2CSK_N.gap.json

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+{"family": "2CSK_N", "n_seqs": 570, "length": 165, "gap_rates": [0.6175438596491228, 0.3263157894736842, 0.15964912280701754, 0.10350877192982456, 0.07543859649122807, 0.05964912280701754, 0.0456140350877193, 0.0456140350877193, 0.042105263157894736, 0.042105263157894736, 0.04035087719298246, 0.043859649122807015, 0.03684210526315789, 0.03684210526315789, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.02982456140350877, 0.028070175438596492, 0.028070175438596492, 0.02982456140350877, 0.02982456140350877, 0.04736842105263158, 0.02982456140350877, 0.028070175438596492, 0.028070175438596492, 0.02456140350877193, 0.02456140350877193, 0.02456140350877193, 0.02456140350877193, 0.02456140350877193, 0.02280701754385965, 0.02456140350877193, 0.02456140350877193, 0.02280701754385965, 0.02280701754385965, 0.02456140350877193, 0.02456140350877193, 0.02280701754385965, 0.028070175438596492, 0.0456140350877193, 0.8859649122807017, 0.9368421052631579, 0.9122807017543859, 0.7929824561403509, 0.10701754385964912, 0.13508771929824562, 0.9438596491228071, 0.13157894736842105, 0.15263157894736842, 0.14385964912280702, 0.1280701754385965, 0.11578947368421053, 0.07017543859649122, 0.06842105263157895, 0.06666666666666667, 0.06315789473684211, 0.054385964912280704, 0.042105263157894736, 0.04035087719298246, 0.04035087719298246, 0.03859649122807018, 0.05087719298245614, 0.06140350877192982, 0.9456140350877194, 0.23508771929824562, 0.14385964912280702, 0.03684210526315789, 0.03508771929824561, 0.02631578947368421, 0.01929824561403509, 0.014035087719298246, 0.014035087719298246, 0.012280701754385965, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.06666666666666667, 0.08070175438596491, 0.015789473684210527, 0.01929824561403509, 0.9456140350877194, 0.015789473684210527, 0.014035087719298246, 0.014035087719298246, 0.015789473684210527, 0.014035087719298246, 0.014035087719298246, 0.012280701754385965, 0.014035087719298246, 0.014035087719298246, 0.8333333333333334, 0.8947368421052632, 0.9280701754385965, 0.8649122807017544, 0.7789473684210526, 0.01929824561403509, 0.14035087719298245, 0.1649122807017544, 0.13508771929824562, 0.6631578947368421, 0.868421052631579, 0.9157894736842105, 0.8298245614035088, 0.46842105263157896, 0.23157894736842105, 0.356140350877193, 0.8421052631578947, 0.48596491228070177, 0.24736842105263157, 0.3649122807017544, 0.06842105263157895, 0.054385964912280704, 0.03508771929824561, 0.028070175438596492, 0.02982456140350877, 0.021052631578947368, 0.021052631578947368, 0.02456140350877193, 0.02456140350877193, 0.02456140350877193, 0.02456140350877193, 0.02280701754385965, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.017543859649122806, 0.01929824561403509, 0.017543859649122806, 0.017543859649122806, 0.01929824561403509, 0.03859649122807018, 0.03508771929824561, 0.056140350877192984, 0.32280701754385965, 0.34210526315789475, 0.3894736842105263, 0.9280701754385965, 0.9385964912280702, 0.7017543859649122, 0.3140350877192982, 0.5368421052631579, 0.4105263157894737, 0.8385964912280702, 0.08771929824561403, 0.04912280701754386, 0.04736842105263158, 0.02982456140350877, 0.02982456140350877, 0.02982456140350877, 0.02982456140350877, 0.031578947368421054, 0.03508771929824561, 0.03684210526315789, 0.042105263157894736, 0.05263157894736842, 0.06315789473684211, 0.07543859649122807, 0.0824561403508772, 0.10175438596491228, 0.12280701754385964, 0.14736842105263157, 0.1912280701754386, 0.30350877192982456, 0.5140350877192983], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/2OG-FeII_Oxy_2.gap.json

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pfam_gap_rates/3-alpha.gap.json

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+{"family": "3-alpha", "n_seqs": 207, "length": 44, "gap_rates": [0.2222222222222222, 0.05314009661835749, 0.033816425120772944, 0.024154589371980676, 0.014492753623188406, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.014492753623188406, 0.00966183574879227, 0.01932367149758454, 0.004830917874396135, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004830917874396135, 0.0, 0.0, 0.07729468599033816, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004830917874396135, 0.004830917874396135, 0.033816425120772944, 0.04830917874396135, 0.08695652173913043, 0.13526570048309178, 0.22705314009661837, 0.4057971014492754, 0.7536231884057971], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/40S_S4_C.gap.json

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+{"family": "40S_S4_C", "n_seqs": 433, "length": 49, "gap_rates": [0.011547344110854504, 0.009237875288683603, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0023094688221709007, 0.0023094688221709007, 0.9445727482678984, 0.03233256351039261, 0.13163972286374134, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.004618937644341801, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.009237875288683603, 0.011547344110854504, 0.013856812933025405, 0.016166281755196306, 0.020785219399538105, 0.020785219399538105, 0.020785219399538105, 0.025404157043879907, 0.03002309468822171, 0.03002309468822171, 0.03233256351039261, 0.04387990762124711, 0.04849884526558892, 0.04849884526558892, 0.053117782909930716, 0.06697459584295612, 0.08545034642032333, 0.09468822170900693, 0.22632794457274827, 0.6581986143187067], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/4HBT.gap.json

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+{"family": "4HBT", "n_seqs": 5000, "length": 87, "gap_rates": [0.6156, 0.2288, 0.136, 0.0912, 0.0834, 0.0666, 0.051, 0.0428, 0.0378, 0.033, 0.0312, 0.0274, 0.0238, 0.0228, 0.0218, 0.0212, 0.0206, 0.0196, 0.0196, 0.0188, 0.018, 0.0184, 0.018, 0.0174, 0.0166, 0.0188, 0.1518, 0.706, 0.7434, 0.7956, 0.903, 0.8068, 0.7674, 0.7234, 0.6554, 0.4234, 0.0944, 0.0132, 0.0074, 0.003, 0.0026, 0.0024, 0.0022, 0.002, 0.0016, 0.001, 0.0006, 0.0006, 0.0006, 0.0008, 0.0016, 0.0016, 0.0022, 0.002, 0.0018, 0.207, 0.0114, 0.0026, 0.0032, 0.0034, 0.0038, 0.004, 0.0046, 0.0068, 0.0112, 0.0132, 0.0158, 0.0182, 0.021, 0.023, 0.0268, 0.0296, 0.0318, 0.0336, 0.0378, 0.042, 0.0448, 0.0504, 0.0666, 0.1066, 0.1522, 0.208, 0.3172, 0.4364, 0.5914, 0.7562, 0.9244], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/5_3_exonuc_N.gap.json

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pfam_gap_rates/5_nucleotid.gap.json

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pfam_gap_rates/7TM-7TMR_HD.gap.json

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pfam_gap_rates/7TM_GPCR_Srsx.gap.json

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pfam_gap_rates/7TM_GPCR_Str.gap.json

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pfam_gap_rates/7tm_3.gap.json

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pfam_gap_rates/A2M_N_2.gap.json

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pfam_gap_rates/A2M_comp.gap.json

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pfam_gap_rates/AAA_15.gap.json

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pfam_gap_rates/AAA_19.gap.json

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pfam_gap_rates/AAA_22.gap.json

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pfam_gap_rates/AAA_33.gap.json

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pfam_gap_rates/AAA_9.gap.json

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pfam_gap_rates/AATase.gap.json

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pfam_gap_rates/AA_kinase.gap.json

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pfam_gap_rates/ABC2_membrane_4.gap.json

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pfam_gap_rates/ABC_tran_2.gap.json

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pfam_gap_rates/ABM.gap.json

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pfam_gap_rates/ADH_N.gap.json

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pfam_gap_rates/ADIP.gap.json

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pfam_gap_rates/AFOR_N.gap.json

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pfam_gap_rates/AICARFT_IMPCHas.gap.json

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pfam_gap_rates/AIRS_C.gap.json

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pfam_gap_rates/ALIX_LYPXL_bnd.gap.json

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pfam_gap_rates/AMP-binding_C_2.gap.json

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pfam_gap_rates/AMPK1_CBM.gap.json

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pfam_gap_rates/AMPKBI.gap.json

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pfam_gap_rates/AMP_N.gap.json

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+{"family": "AMP_N", "n_seqs": 1528, "length": 150, "gap_rates": [0.3854712041884817, 0.22709424083769633, 0.17277486910994763, 0.15575916230366493, 0.14463350785340315, 0.12761780104712042, 0.11714659685863875, 0.112565445026178, 0.10602094240837696, 0.10078534031413612, 0.09554973821989529, 0.08115183246073299, 0.7768324607329843, 0.831151832460733, 0.8835078534031413, 0.9299738219895288, 0.9181937172774869, 0.8534031413612565, 0.818717277486911, 0.7428010471204188, 0.07068062827225131, 0.32329842931937175, 0.06609947643979057, 0.03795811518324607, 0.03534031413612566, 0.03468586387434555, 0.034031413612565446, 0.032722513089005235, 0.03206806282722513, 0.030759162303664923, 0.030104712041884817, 0.031413612565445025, 0.030759162303664923, 0.032722513089005235, 0.03992146596858639, 0.03795811518324607, 0.03992146596858639, 0.04057591623036649, 0.6662303664921466, 0.03206806282722513, 0.026832460732984294, 0.025523560209424083, 0.02617801047120419, 0.024214659685863876, 0.024214659685863876, 0.01963350785340314, 0.015706806282722512, 0.0137434554973822, 0.012434554973821989, 0.012434554973821989, 0.012434554973821989, 0.011780104712041885, 0.013089005235602094, 0.012434554973821989, 0.011780104712041885, 0.011780104712041885, 0.011780104712041885, 0.011780104712041885, 0.9280104712041884, 0.9286649214659686, 0.9234293193717278, 0.01112565445026178, 0.011780104712041885, 0.011780104712041885, 0.011780104712041885, 0.011780104712041885, 0.012434554973821989, 0.012434554973821989, 0.011780104712041885, 0.3776178010471204, 0.45157068062827227, 0.8959424083769634, 0.9456806282722513, 0.9267015706806283, 0.8219895287958116, 0.46596858638743455, 0.4640052356020942, 0.36910994764397903, 0.32002617801047123, 0.04253926701570681, 0.01832460732984293, 0.013089005235602094, 0.013089005235602094, 0.012434554973821989, 0.011780104712041885, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.00981675392670157, 0.9109947643979057, 0.912303664921466, 0.912303664921466, 0.912303664921466, 0.912303664921466, 0.9142670157068062, 0.912303664921466, 0.912303664921466, 0.912303664921466, 0.912303664921466, 0.9096858638743456, 0.00981675392670157, 0.008507853403141362, 0.007853403141361256, 0.00981675392670157, 0.00981675392670157, 0.010471204188481676, 0.009162303664921465, 0.00981675392670157, 0.00981675392670157, 0.00981675392670157, 0.012434554973821989, 0.012434554973821989, 0.017015706806282723, 0.015706806282722512, 0.015052356020942409, 0.016361256544502618, 0.017015706806282723, 0.016361256544502618, 0.01767015706806283, 0.01832460732984293, 0.018979057591623036, 0.020287958115183247, 0.01963350785340314, 0.01963350785340314, 0.021596858638743454, 0.025523560209424083, 0.14528795811518325, 0.032722513089005235, 0.03534031413612566, 0.03861256544502618, 0.04319371727748691, 0.04581151832460733, 0.04908376963350786, 0.058900523560209424, 0.06479057591623037, 0.07591623036649214, 0.0831151832460733, 0.10013089005235602, 0.12369109947643979, 0.1505235602094241, 0.19175392670157068, 0.29842931937172773, 0.33507853403141363, 0.39986910994764396, 0.4908376963350785, 0.5471204188481675, 0.6773560209424084, 0.93717277486911, 0.7192408376963351, 0.7905759162303665], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/APC_r.gap.json

@@ -0,0 +1 @@
+{"family": "APC_r", "n_seqs": 250, "length": 25, "gap_rates": [0.524, 0.248, 0.132, 0.112, 0.084, 0.044, 0.132, 0.924, 0.036, 0.036, 0.004, 0.0, 0.0, 0.0, 0.004, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.012, 0.012, 0.016, 0.08], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/APG5.gap.json

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pfam_gap_rates/ARD.gap.json

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pfam_gap_rates/ART.gap.json

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pfam_gap_rates/ATE_C.gap.json

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pfam_gap_rates/ATE_N.gap.json

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pfam_gap_rates/ATG101.gap.json

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pfam_gap_rates/ATG2_CAD.gap.json

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pfam_gap_rates/ATP-grasp_4.gap.json

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pfam_gap_rates/ATP-synt_10.gap.json

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pfam_gap_rates/ATP-synt_C.gap.json

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+{"family": "ATP-synt_C", "n_seqs": 5000, "length": 64, "gap_rates": [0.3068, 0.1282, 0.0798, 0.0624, 0.0496, 0.0388, 0.0238, 0.179, 0.0216, 0.0194, 0.0168, 0.0118, 0.0148, 0.0098, 0.009, 0.0076, 0.006, 0.0054, 0.005, 0.0048, 0.0046, 0.0044, 0.004, 0.004, 0.0042, 0.0038, 0.0032, 0.0038, 0.0034, 0.0026, 0.0024, 0.0034, 0.003, 0.54, 0.5422, 0.5402, 0.5386, 0.0036, 0.003, 0.0032, 0.0034, 0.0036, 0.0038, 0.004, 0.0044, 0.0058, 0.0062, 0.0062, 0.0064, 0.0068, 0.0074, 0.0078, 0.009, 0.009, 0.0112, 0.0134, 0.0154, 0.0182, 0.0224, 0.0304, 0.0404, 0.049, 0.0808, 0.3392], "gap_symbol": "-", "mismatch_seqs": 0}

pfam_gap_rates/ATP_bind_3.gap.json

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pfam_gap_rates/ATP_synt_H.gap.json

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pfam_gap_rates/AXE1.gap.json

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pfam_gap_rates/AbrB-like.gap.json

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pfam_gap_rates/Acetyltransf_13.gap.json

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