| --- |
| pretty_name: Gut Wall Cleaned |
| tags: |
| - chemistry |
| - pharmacokinetics |
| - tabular |
| --- |
| |
| # Gut Wall Cleaned |
|
|
| This dataset contains 1,490 accepted finite scalar measurement children from the |
| versioned canonical-base pipeline. A parent row with several unambiguous measurements |
| can produce several child rows. Rejected, malformed, ambiguous, bounded, range-only, |
| TDC-overlapping, and endpoint-unassignable records are not published here. |
|
|
| ## Cleaning |
|
|
| The following source columns are replaced in place with validated canonical or lexical |
| normalizations: |
|
|
| - `smiles` → `canonical_smiles` |
| - `gut_wall_process` → `canonical_endpoint_key` |
| - `transporter_or_enzyme` → `transporter_or_enzyme_normalized` |
| - `substrate_status` → `substrate_status_normalized` |
| - `assay_system` → `assay_system_normalized` |
| - `intestinal_site` → `intestinal_site_normalized` |
| - `qualifying_conditions` → `qualifying_conditions_normalized` |
| - `measured_value` → `scalar_value` |
|
|
| The public column names on the left are retained; the names on the right identify the |
| validated internal values used to replace them. Columns omitted from this dataset: |
|
|
| - `extraction_id`: `internal_identifier` |
| - `global_identifier`: `internal_identifier` |
| - `auc_window`: `all_null_in_dataset` |
| - `defining_timepoint`: `all_null_in_dataset` |
|
|
| `canonical_endpoint_key` is the endpoint identity field. No `condition_key` is added. |
| `species_exact` is populated only for explicit, unambiguous species references. Narrative |
| and other source fields without a validated normalization remain source text. |
|
|
