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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 36 new columns ({'data.fluxH2o.stor.flux', 'qfqm.fluxH2o.nsae.qfFinl', 'data.foot.stat.distXaxs90', 'data.foot.stat.distZaxsAbl', 'qfqm.fluxCo2.stor.qfFinl', 'data.foot.stat.distXaxsMax', 'qfqm.fluxH2o.stor.qfFinl', 'data.foot.stat.distZaxsMeasDisp', 'data.fluxTemp.turb.flux', 'qfqm.fluxH2o.turb.qfFinl', 'data.fluxCo2.turb.flux', 'data.foot.stat.veloYaxsHorSd', 'qfqm.fluxCo2.turb.qfFinl', 'data.foot.stat.paraStbl', 'data.fluxCo2.nsae.flux', 'qfqm.foot.turb.qfFinl', 'data.fluxTemp.nsae.flux', 'data.foot.stat.distObkv', 'data.foot.stat.angZaxsErth', 'data.fluxH2o.turb.flux', 'data.fluxTemp.stor.flux', 'timeBgn', 'data.foot.stat.veloZaxsHorSd', 'qfqm.fluxMome.turb.qfFinl', 'qfqm.fluxCo2.nsae.qfFinl', 'data.foot.stat.veloFric', 'data.foot.stat.distYaxs90', 'qfqm.fluxTemp.stor.qfFinl', 'data.foot.stat.distZaxsRgh', 'data.fluxMome.turb.veloFric', 'data.fluxH2o.nsae.flux', 'qfqm.fluxTemp.nsae.qfFinl', 'data.fluxCo2.stor.flux', 'timeEnd', 'data.foot.stat.distReso', 'qfqm.fluxTemp.turb.qfFinl'}) and 16 missing columns ({'domainID', 'tempSingleMaximum', 'tempSingleVariance', 'tempSingleMean', 'siteID', 'publicationDate', 'finalQF', 'tempSingleNumPts', 'release', 'tempSingleMinimum', 'endDateTime', 'startDateTime', 'horizontalPosition', 'tempSingleExpUncert', 'tempSingleStdErMean', 'verticalPosition'}).
This happened while the csv dataset builder was generating data using
hf://datasets/johnnybwell/neon_OSBS/raw/eddy_covariance/OSBS_eddy_covariance_2017-03_2026-08.csv (at revision d1cd507df0b8a73afb1d253bbdec99e595e4c1e6), ['hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/air_temperature/OSBS_air_temperature_2014-08_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/eddy_covariance/OSBS_eddy_covariance_2017-03_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/humidity/OSBS_relative_humidity_2015-06_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/phenocam/canopy/OSBS_phenocam_canopy_2016-12-15_2026-10-04.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/phenocam/understory/OSBS_phenocam_understory_2016-12-14_2026-10-04.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/precipitation/OSBS_precipitation_2016-09_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/pressure/OSBS_barometric_pressure_2014-08_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/radiation/OSBS_radiation_net_2014-08_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/radiation/OSBS_radiation_par_2014-08_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/soil_co2/OSBS_soil_co2_2016-11_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/soil_heat_flux/OSBS_soil_heat_flux_2016-09_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/soil_moisture/OSBS_soil_moisture_2016-09_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/soil_temperature/OSBS_soil_temperature_2016-09_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/wind/OSBS_wind_2014-08_2026-08.csv']
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1848, in _prepare_split_single
writer.write_table(table)
~~~~~~~~~~~~~~~~~~^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 784, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 795, in _write_table
pa_table = table_cast(pa_table, self._schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2378, in table_cast
return cast_table_to_schema(table, schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2306, in cast_table_to_schema
raise CastError(
...<3 lines>...
)
datasets.table.CastError: Couldn't cast
timeBgn: string
timeEnd: string
data.fluxCo2.nsae.flux: double
data.fluxCo2.stor.flux: double
data.fluxCo2.turb.flux: double
data.fluxH2o.nsae.flux: double
data.fluxH2o.stor.flux: double
data.fluxH2o.turb.flux: double
data.fluxMome.turb.veloFric: double
data.fluxTemp.nsae.flux: double
data.fluxTemp.stor.flux: double
data.fluxTemp.turb.flux: double
data.foot.stat.angZaxsErth: double
data.foot.stat.distReso: double
data.foot.stat.veloYaxsHorSd: double
data.foot.stat.veloZaxsHorSd: double
data.foot.stat.veloFric: double
data.foot.stat.distZaxsMeasDisp: double
data.foot.stat.distZaxsRgh: double
data.foot.stat.distObkv: double
data.foot.stat.paraStbl: double
data.foot.stat.distZaxsAbl: double
data.foot.stat.distXaxs90: double
data.foot.stat.distXaxsMax: double
data.foot.stat.distYaxs90: double
qfqm.fluxCo2.nsae.qfFinl: double
qfqm.fluxCo2.stor.qfFinl: double
qfqm.fluxCo2.turb.qfFinl: double
qfqm.fluxH2o.nsae.qfFinl: double
qfqm.fluxH2o.stor.qfFinl: double
qfqm.fluxH2o.turb.qfFinl: double
qfqm.fluxMome.turb.qfFinl: double
qfqm.fluxTemp.nsae.qfFinl: double
qfqm.fluxTemp.stor.qfFinl: double
qfqm.fluxTemp.turb.qfFinl: double
qfqm.foot.turb.qfFinl: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 5595
to
{'domainID': Value('string'), 'siteID': Value('string'), 'horizontalPosition': Value('int64'), 'verticalPosition': Value('int64'), 'startDateTime': Value('string'), 'endDateTime': Value('string'), 'tempSingleMean': Value('float64'), 'tempSingleMinimum': Value('float64'), 'tempSingleMaximum': Value('float64'), 'tempSingleVariance': Value('float64'), 'tempSingleNumPts': Value('float64'), 'tempSingleExpUncert': Value('float64'), 'tempSingleStdErMean': Value('float64'), 'finalQF': Value('int64'), 'publicationDate': Value('string'), 'release': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
~~~~~~~~~~~~~~~~~~~~~~~~~^
builder, max_dataset_size_bytes=max_dataset_size_bytes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1694, in _prepare_split
for job_id, done, content in self._prepare_split_single(
~~~~~~~~~~~~~~~~~~~~~~~~~~^
gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
):
^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1850, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
...<4 lines>...
)
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 36 new columns ({'data.fluxH2o.stor.flux', 'qfqm.fluxH2o.nsae.qfFinl', 'data.foot.stat.distXaxs90', 'data.foot.stat.distZaxsAbl', 'qfqm.fluxCo2.stor.qfFinl', 'data.foot.stat.distXaxsMax', 'qfqm.fluxH2o.stor.qfFinl', 'data.foot.stat.distZaxsMeasDisp', 'data.fluxTemp.turb.flux', 'qfqm.fluxH2o.turb.qfFinl', 'data.fluxCo2.turb.flux', 'data.foot.stat.veloYaxsHorSd', 'qfqm.fluxCo2.turb.qfFinl', 'data.foot.stat.paraStbl', 'data.fluxCo2.nsae.flux', 'qfqm.foot.turb.qfFinl', 'data.fluxTemp.nsae.flux', 'data.foot.stat.distObkv', 'data.foot.stat.angZaxsErth', 'data.fluxH2o.turb.flux', 'data.fluxTemp.stor.flux', 'timeBgn', 'data.foot.stat.veloZaxsHorSd', 'qfqm.fluxMome.turb.qfFinl', 'qfqm.fluxCo2.nsae.qfFinl', 'data.foot.stat.veloFric', 'data.foot.stat.distYaxs90', 'qfqm.fluxTemp.stor.qfFinl', 'data.foot.stat.distZaxsRgh', 'data.fluxMome.turb.veloFric', 'data.fluxH2o.nsae.flux', 'qfqm.fluxTemp.nsae.qfFinl', 'data.fluxCo2.stor.flux', 'timeEnd', 'data.foot.stat.distReso', 'qfqm.fluxTemp.turb.qfFinl'}) and 16 missing columns ({'domainID', 'tempSingleMaximum', 'tempSingleVariance', 'tempSingleMean', 'siteID', 'publicationDate', 'finalQF', 'tempSingleNumPts', 'release', 'tempSingleMinimum', 'endDateTime', 'startDateTime', 'horizontalPosition', 'tempSingleExpUncert', 'tempSingleStdErMean', 'verticalPosition'}).
This happened while the csv dataset builder was generating data using
hf://datasets/johnnybwell/neon_OSBS/raw/eddy_covariance/OSBS_eddy_covariance_2017-03_2026-08.csv (at revision d1cd507df0b8a73afb1d253bbdec99e595e4c1e6), ['hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/air_temperature/OSBS_air_temperature_2014-08_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/eddy_covariance/OSBS_eddy_covariance_2017-03_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/humidity/OSBS_relative_humidity_2015-06_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/phenocam/canopy/OSBS_phenocam_canopy_2016-12-15_2026-10-04.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/phenocam/understory/OSBS_phenocam_understory_2016-12-14_2026-10-04.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/precipitation/OSBS_precipitation_2016-09_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/pressure/OSBS_barometric_pressure_2014-08_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/radiation/OSBS_radiation_net_2014-08_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/radiation/OSBS_radiation_par_2014-08_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/soil_co2/OSBS_soil_co2_2016-11_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/soil_heat_flux/OSBS_soil_heat_flux_2016-09_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/soil_moisture/OSBS_soil_moisture_2016-09_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/soil_temperature/OSBS_soil_temperature_2016-09_2026-08.csv', 'hf://datasets/johnnybwell/neon_OSBS@d1cd507df0b8a73afb1d253bbdec99e595e4c1e6/raw/wind/OSBS_wind_2014-08_2026-08.csv']
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
domainID string | siteID string | horizontalPosition int64 | verticalPosition int64 | startDateTime string | endDateTime string | tempSingleMean null | tempSingleMinimum null | tempSingleMaximum null | tempSingleVariance null | tempSingleNumPts null | tempSingleExpUncert null | tempSingleStdErMean null | finalQF int64 | publicationDate string | release string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D03 | OSBS | 0 | 10 | 2014-08-07 00:00:00+00:00 | 2014-08-07 00:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 00:30:00+00:00 | 2014-08-07 01:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 01:00:00+00:00 | 2014-08-07 01:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 01:30:00+00:00 | 2014-08-07 02:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 02:00:00+00:00 | 2014-08-07 02:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 02:30:00+00:00 | 2014-08-07 03:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 03:00:00+00:00 | 2014-08-07 03:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 03:30:00+00:00 | 2014-08-07 04:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 04:00:00+00:00 | 2014-08-07 04:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 04:30:00+00:00 | 2014-08-07 05:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 05:00:00+00:00 | 2014-08-07 05:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 05:30:00+00:00 | 2014-08-07 06:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 06:00:00+00:00 | 2014-08-07 06:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 06:30:00+00:00 | 2014-08-07 07:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 07:00:00+00:00 | 2014-08-07 07:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 07:30:00+00:00 | 2014-08-07 08:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 08:00:00+00:00 | 2014-08-07 08:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 08:30:00+00:00 | 2014-08-07 09:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 09:00:00+00:00 | 2014-08-07 09:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 09:30:00+00:00 | 2014-08-07 10:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 10:00:00+00:00 | 2014-08-07 10:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 10:30:00+00:00 | 2014-08-07 11:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 11:00:00+00:00 | 2014-08-07 11:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 11:30:00+00:00 | 2014-08-07 12:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 12:00:00+00:00 | 2014-08-07 12:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 12:30:00+00:00 | 2014-08-07 13:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 13:00:00+00:00 | 2014-08-07 13:30:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 13:30:00+00:00 | 2014-08-07 14:00:00+00:00 | null | null | null | null | null | null | null | 1 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 14:00:00+00:00 | 2014-08-07 14:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 14:30:00+00:00 | 2014-08-07 15:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 15:00:00+00:00 | 2014-08-07 15:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 15:30:00+00:00 | 2014-08-07 16:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 16:00:00+00:00 | 2014-08-07 16:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 16:30:00+00:00 | 2014-08-07 17:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 17:00:00+00:00 | 2014-08-07 17:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 17:30:00+00:00 | 2014-08-07 18:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 18:00:00+00:00 | 2014-08-07 18:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 18:30:00+00:00 | 2014-08-07 19:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 19:00:00+00:00 | 2014-08-07 19:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 19:30:00+00:00 | 2014-08-07 20:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 20:00:00+00:00 | 2014-08-07 20:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 20:30:00+00:00 | 2014-08-07 21:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 21:00:00+00:00 | 2014-08-07 21:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 21:30:00+00:00 | 2014-08-07 22:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 22:00:00+00:00 | 2014-08-07 22:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 22:30:00+00:00 | 2014-08-07 23:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 23:00:00+00:00 | 2014-08-07 23:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-07 23:30:00+00:00 | 2014-08-08 00:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 00:00:00+00:00 | 2014-08-08 00:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 00:30:00+00:00 | 2014-08-08 01:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 01:00:00+00:00 | 2014-08-08 01:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 01:30:00+00:00 | 2014-08-08 02:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 02:00:00+00:00 | 2014-08-08 02:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 02:30:00+00:00 | 2014-08-08 03:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 03:00:00+00:00 | 2014-08-08 03:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 03:30:00+00:00 | 2014-08-08 04:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 04:00:00+00:00 | 2014-08-08 04:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 04:30:00+00:00 | 2014-08-08 05:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 05:00:00+00:00 | 2014-08-08 05:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 05:30:00+00:00 | 2014-08-08 06:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 06:00:00+00:00 | 2014-08-08 06:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 06:30:00+00:00 | 2014-08-08 07:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 07:00:00+00:00 | 2014-08-08 07:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 07:30:00+00:00 | 2014-08-08 08:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 08:00:00+00:00 | 2014-08-08 08:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 08:30:00+00:00 | 2014-08-08 09:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 09:00:00+00:00 | 2014-08-08 09:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 09:30:00+00:00 | 2014-08-08 10:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 10:00:00+00:00 | 2014-08-08 10:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 10:30:00+00:00 | 2014-08-08 11:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 11:00:00+00:00 | 2014-08-08 11:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 11:30:00+00:00 | 2014-08-08 12:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 12:00:00+00:00 | 2014-08-08 12:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 12:30:00+00:00 | 2014-08-08 13:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 13:00:00+00:00 | 2014-08-08 13:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 13:30:00+00:00 | 2014-08-08 14:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 14:00:00+00:00 | 2014-08-08 14:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 14:30:00+00:00 | 2014-08-08 15:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 15:00:00+00:00 | 2014-08-08 15:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 15:30:00+00:00 | 2014-08-08 16:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 16:00:00+00:00 | 2014-08-08 16:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 16:30:00+00:00 | 2014-08-08 17:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 17:00:00+00:00 | 2014-08-08 17:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 17:30:00+00:00 | 2014-08-08 18:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 18:00:00+00:00 | 2014-08-08 18:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 18:30:00+00:00 | 2014-08-08 19:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 19:00:00+00:00 | 2014-08-08 19:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 19:30:00+00:00 | 2014-08-08 20:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 20:00:00+00:00 | 2014-08-08 20:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 20:30:00+00:00 | 2014-08-08 21:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 21:00:00+00:00 | 2014-08-08 21:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 21:30:00+00:00 | 2014-08-08 22:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 22:00:00+00:00 | 2014-08-08 22:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 22:30:00+00:00 | 2014-08-08 23:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 23:00:00+00:00 | 2014-08-08 23:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-08 23:30:00+00:00 | 2014-08-09 00:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-09 00:00:00+00:00 | 2014-08-09 00:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-09 00:30:00+00:00 | 2014-08-09 01:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-09 01:00:00+00:00 | 2014-08-09 01:30:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
D03 | OSBS | 0 | 10 | 2014-08-09 01:30:00+00:00 | 2014-08-09 02:00:00+00:00 | null | null | null | null | null | null | null | 0 | 20230202T222035Z | RELEASE-2026 |
End of preview.
YAML Metadata Warning:empty or missing yaml metadata in repo card
Check out the documentation for more information.
NEON OSBS Data
TL;DR
This repo downloads and stores sensor data from the NSF NEON
(National Ecological Observatory Network) network for the OSBS site
(Ordway-Swisher Biological Station, FL, domain D03, Southeast). It's
a sibling of neon_CPER and neon_CLBJ, reusing the same catalog-driven
download architecture unchanged. Six scripts pull three different kinds
of NEON/NEON-adjacent data:
| Script | Source | Data |
|---|---|---|
scripts/download_neon_product.py |
NEON /data API (neonutilities.load_by_product) |
any single CSV-tabular sensor product |
scripts/download_all_products.py |
same, looped, fixed --years-back window |
all 11 cataloged sensor products at once |
scripts/download_full_history.py |
same, looped, each product's own true full-history range | all 11 cataloged sensor products, no trailing-window guessing |
scripts/neon_site_availability.py |
NEON /sites metadata API (no token needed) |
per-product true earliest/latest available month for a site |
scripts/download_phenocam_gcc.py |
PhenoCam Network (phenocam.nau.edu) | daily GCC greenness summaries, OSBS's camera(s), --site-driven |
scripts/download_eddy_covariance.py |
NEON /data API (neonutilities.zips_by_product + stack_eddy) |
bundled eddy covariance / NEE flux data |
scripts/upload_to_huggingface.py |
HuggingFace Hub (huggingface_hub) |
pushes raw/ + metadata/ + this README to a HF dataset repo |
Which product maps to which folder/table/interval is defined in
metadata/sensor_catalog.yaml, not hardcoded in any script -- same as
neon_CPER/neon_CLBJ. You need a free NEON API token (env var
NEON_API_TOKEN) for anything going through NEON's own /data API (not
needed for the PhenoCam script or neon_site_availability.py, which only
hits NEON's open /sites metadata endpoint).
Current data status: all 11 sensor products, both PhenoCam series, and
eddy covariance have been downloaded (~3.1 GB sensor data, ~1.8 MB
PhenoCam, 14 MB final eddy covariance CSV -- pulled 2026-10-05, see
Data currently on hand below for the real
per-product numbers). processed/ is still empty. The eddy covariance
pull hit a genuine schema-incompatibility bug on one month (2017-02,
produced under an older NEON processing revision) that crashes
neonutilities's stack_eddy() -- worked around by excluding that one
file; see Known issues below.
OSBS's own PhenoCam ROI structure turned out to be noticeably more
complex than CPER's or CLBJ's (9 and 6 ROI codes vs. 1-4) -- live
verification (direct CSV parsing, 2026-10-05) found the semantically
obvious pick (UN_0001, matching CLBJ's naming) is actually the
wrong one: it's a short series retired in 2018, not the long-running
camera. GR_1000+GR_2000 (stitched) is used instead -- see
Product catalog below.
Like neon_CPER (not neon_CLBJ), this repo's goal is full available
history per product, not a trailing window.
Repo layout
neon_OSBS/
├── README.md # this file
├── .gitignore # excludes .venv/, raw/, __pycache__/, etc. (copied from neon_CPER)
├── scripts/
│ ├── download_neon_product.py # single-product downloader via NEON /data API (COPIED UNCHANGED from neon_CPER)
│ ├── download_all_products.py # loops download_one() over every catalog product, fixed --years-back (COPIED UNCHANGED)
│ ├── download_full_history.py # same loop, each product's own true full-history --start/--end (COPIED UNCHANGED)
│ ├── neon_site_availability.py # looks up each product's true available date range for a site, no token (COPIED UNCHANGED)
│ ├── download_phenocam_gcc.py # --site-driven PhenoCam downloader, catalog-lookup (COPIED UNCHANGED)
│ ├── download_eddy_covariance.py # DP4.00200.001 HDF5 download + stack_eddy() + QC filter (COPIED UNCHANGED)
│ ├── upload_to_huggingface.py # NEW: pushes raw/ + metadata/ + README.md to a HF dataset repo
│ └── requirements.txt # neonutilities, pyyaml, pandas<3, requests, huggingface_hub
├── metadata/
│ ├── sensor_catalog.yaml # product catalog: 11 core sensor products + eddy covariance, copied unchanged
│ │ # from neon_CPER; PhenoCam entries are OSBS-specific and UNVERIFIED, see notes
│ └── README.md # folder-to-product mapping + OSBS-specific findings/caveats (this repo's version)
├── raw/ # one subfolder per product -- all 11 sensor products + both PhenoCam series pulled (2026-10-05)
│ ├── air_temperature/ # DP1.00002.001 -- HAS DATA
│ ├── soil_moisture/ # DP1.00094.001 -- HAS DATA
│ ├── soil_temperature/ # DP1.00041.001 -- HAS DATA
│ ├── precipitation/ # DP1.00044.001 -- HAS DATA
│ ├── radiation/ # DP1.00023.001 + DP1.00024.001 -- HAS DATA
│ ├── humidity/ # DP1.00098.001 -- HAS DATA
│ ├── pressure/ # DP1.00004.001 -- HAS DATA
│ ├── wind/ # DP1.00001.001 -- HAS DATA
│ ├── soil_heat_flux/ # DP1.00040.001 -- HAS DATA
│ ├── soil_co2/ # DP1.00095.001 -- HAS DATA
│ ├── phenocam/
│ │ ├── understory/ # NEON.D03.OSBS.DP1.00042 (ROIs GR_1000+GR_2000 stitched -- HAS DATA)
│ │ └── canopy/ # NEON.D03.OSBS.DP1.00033 (ROIs EN_1000+EN_2000 stitched -- HAS DATA)
│ └── eddy_covariance/ # DP4.00200.001 -- HAS DATA (100/101 site-months; 2017-02 excluded, schema bug)
└── processed/ # empty; for derived/analysis outputs you create from raw/ (not written to by any script)
Detailed guide
1. Setup
cd ~/projects/neon_OSBS
python3 -m venv .venv
source .venv/bin/activate
pip install -r scripts/requirements.txt
Dependencies (scripts/requirements.txt): neonutilities>=2.0.1,
pyyaml>=6.0, pandas<3, requests>=2.0, huggingface_hub>=0.25.0. The
pandas<3 pin is required -- stack_eddy() (used only by
download_eddy_covariance.py) calls a drop(columns=..., axis=1)
pattern that pandas 3.0 rejects outright.
2. Getting a NEON API token (required for NEON API scripts)
Since a June 2026 NEON policy change, the /data endpoint rejects
anonymous requests outright (403 Access Denied). Metadata endpoints like
/products and /sites still work without a token -- that includes
neon_site_availability.py -- but any actual data pull through
download_neon_product.py, download_all_products.py,
download_full_history.py, or download_eddy_covariance.py needs one.
download_phenocam_gcc.py does not need a token either -- it pulls
from phenocam.nau.edu's own open archive, a separate system from NEON's
API.
- Create a free account at https://data.neonscience.org/
- Generate an API token from your account page.
- Set it in your shell before running any NEON-API script:
export NEON_API_TOKEN=<your token>
(or pass --token <your token> directly to any script that needs it).
Never commit a token to this repo.
3. Downloading data
Step 0 -- check per-product availability for OSBS first (no token, no download):
python3 scripts/neon_site_availability.py --site OSBS
This prints each of the 11 core products' + eddy covariance's true
available start_ym -> end_ym, straight from NEON's /sites metadata.
Run 2026-10-05, OSBS has no missing products and no internal gaps --
every one of the 11 sensor products plus eddy covariance is listed:
| Alias | ID | Available range |
|---|---|---|
wind |
DP1.00001.001 | 2014-08 -> 2026-08 |
air_temperature |
DP1.00002.001 | 2014-08 -> 2026-08 |
barometric_pressure |
DP1.00004.001 | 2014-08 -> 2026-08 |
radiation_net |
DP1.00023.001 | 2014-08 -> 2026-08 |
radiation_par |
DP1.00024.001 | 2014-08 -> 2026-08 |
soil_heat_flux |
DP1.00040.001 | 2016-09 -> 2026-08 |
soil_temperature |
DP1.00041.001 | 2016-09 -> 2026-08 |
precipitation |
DP1.00044.001 | 2016-09 -> 2026-08 |
soil_moisture |
DP1.00094.001 | 2016-09 -> 2026-08 |
soil_co2 |
DP1.00095.001 | 2016-11 -> 2026-08 |
relative_humidity |
DP1.00098.001 | 2015-06 -> 2026-08 |
| eddy covariance | DP4.00200.001 | 2017-02 -> 2026-08 |
Re-run this yourself before a real pull if time has passed, since NEON's published range can advance.
Step 1 -- single-product test pull (confirm token + site code work before anything larger):
python3 scripts/download_neon_product.py --site OSBS --product air_temperature --start 2024-01 --end 2024-03
Step 2 -- all 11 sensor products, full available history per product:
python3 scripts/download_full_history.py --site OSBS
(download_all_products.py --site OSBS --years-back N also works, for a
fixed trailing window instead of full history.)
Step 3 -- eddy covariance, as its own separate, manually-confirmed step (potentially large -- check the size estimate first):
python3 scripts/neon_site_availability.py --site OSBS # DP4.00200.001: 2017-02 -> 2026-08 (confirmed 2026-10-05)
python3 scripts/download_eddy_covariance.py --site OSBS --start 2017-02 --end 2026-08
download_eddy_covariance.py estimates total download size and checks
free disk space before downloading anything, aborting if the estimate
exceeds 90% of free space -- confirm the estimate it prints looks
reasonable before letting it proceed. For OSBS specifically, this
script's own stack_eddy() call will crash on the 2017-02 file (see
Known issues) -- the script does not
currently work around this automatically; the fix used here was manual
(move that one file out of the staging dir, re-run stack_eddy() on the
rest). If re-running this pull from scratch, expect to repeat that
workaround.
Step 4 -- PhenoCam, always run separately from the above (no token needed):
python3 scripts/download_phenocam_gcc.py --site OSBS --full-history
Before running this, read metadata/README.md's
PhenoCam section -- OSBS has 9 canopy ROI codes and 6 understory ROI
codes (vs. CPER's 1-4). These have now been verified live (direct CSV
parse, 2026-10-05): the catalog uses EN_1000+EN_2000 (canopy) and
GR_1000+GR_2000 (understory), stitched chronologically -- notably
UN_0001, the semantically obvious name match for "understory," turned
out to be the wrong pick (a short series retired in 2018).
4. Product catalog (metadata/sensor_catalog.yaml)
Catalog structure and the 11 core sensor product entries + the
DP4.00200.001 eddy covariance entry are copied unchanged from
neon_CPER (NEON product catalog entries aren't site-specific -- --site
is passed at download time). The two PhenoCam entries are OSBS-specific
and have been verified live (direct CSV parse) -- see
metadata/README.md for the full detail, including
why UN_0001 was rejected in favor of GR_1000+GR_2000.
5. Data currently on hand
All 11 sensor products and both PhenoCam series have been pulled
(2026-10-05), via download_full_history.py (plus individual retries
for 5 products that hit transient rate-limiting) and
download_phenocam_gcc.py --full-history.
11 NEON sensor products, basic package, ~3.1 GB total. Every product
was requested through 2026-08 but the actual pulled data stops at
2025-06-30 in every case -- neonutilities excludes NEON's most
recent ~13-14 months as unreviewed "provisional" data by default. This is
uniform across all 11 products, not a per-product gap:
| Product | dpid | rows | size | coverage |
|---|---|---|---|---|
| air_temperature | DP1.00002.001 | 955,440 | 136M | 2014-08-07 -> 2025-06-30 |
| soil_moisture | DP1.00094.001 | 6,151,680 | 1.1G | 2016-09-22 -> 2025-06-30 |
| soil_temperature | DP1.00041.001 | 6,920,640 | 996M | 2016-09-22 -> 2025-06-30 |
| relative_humidity | DP1.00098.001 | 339,696 | 72M | 2015-06-08 -> 2025-06-30 |
| barometric_pressure | DP1.00004.001 | 191,376 | 32M | 2014-08-01 -> 2025-06-30 |
| precipitation | DP1.00044.001 | 76,800 | 8.1M | 2016-09-26 -> 2025-06-30 |
| wind | DP1.00001.001 | 955,440 | 151M | 2014-08-07 -> 2025-06-30 |
| radiation_net | DP1.00023.001 | 382,176 | 83M | 2014-08-07 -> 2025-06-30 |
| radiation_par | DP1.00024.001 | 1,146,816 | 169M | 2014-08-01 -> 2025-06-30 |
| soil_heat_flux | DP1.00040.001 | 461,376 | 64M | 2016-09-22 -> 2025-06-30 |
| soil_co2 | DP1.00095.001 | 2,275,920 | 310M | 2016-11-04 -> 2025-06-30 |
Retry note: on the first download_full_history.py pass, 5 of 11
products (wind, radiation_net, radiation_par, soil_heat_flux, soil_co2)
failed with a transient ConnectionError: Cannot access NEON API --
the same rate-limiting pattern already documented in neon_CPER's
README. A 90s backoff followed by individually re-running each via
download_neon_product.py cleared all 5 on the first retry.
2 PhenoCam Network cameras -- verified live against
phenocam.nau.edu's per-ROI CSV date ranges (direct pandas.read_csv(),
not a summarized fetch) on 2026-10-05:
| Camera | ROI(s) | Rows | Coverage | Notes |
|---|---|---|---|---|
canopy (NEON.D03.OSBS.DP1.00033) |
EN_1000+EN_2000 |
3,559 | 2016-12-15 -> 2026-10-04 | One 22-day gap at the generation hand-off (2026-02-24 -> 2026-03-17). EN_1000 alone runs gap-free 2016-12-15 -> 2026-02-23; EN_2000 is a new generation starting right after. |
understory (NEON.D03.OSBS.DP1.00042) |
GR_1000+GR_2000 |
3,546 | 2016-12-14 -> 2026-10-04 | One 36-day gap at the hand-off (2025-12-10 -> 2026-01-14). UN_0001 -- the semantically obvious name match -- was checked and rejected: it's a short series that stops 2018-03-11 (453 rows), the same pattern as CPER's abandoned understory camera. GR_1000+GR_2000 gives vastly better coverage. |
Eddy covariance (DP4.00200.001): requested 2017-02 -> 2026-08 (115
site-months); zips_by_product() actually returned 101 site-months
(~18 GB raw HDF5). Of those, one file (2017-02) crashed
stack_eddy() with a column-shape error -- its generation timestamp
(Dec 2022) was far older than every other month's (Jan 2026+), meaning
it was produced under an incompatible older NEON processing schema. Not
a download/network/disk issue; re-pulling it would hit the same error.
Worked around by excluding that one file and stacking the remaining 100
(2017-03 -> 2025-06-30, 146,112 unfiltered rows). After the NEE QC filter
(qfqm.fluxCo2.nsae.qfFinl == 0, which dropped 78.8% of rows -- 115,124
of 146,112), the final output is 14 MB, 30,988 rows
(raw/eddy_covariance/OSBS_eddy_covariance_2017-03_2026-08.csv).
Notably, the QC-passing rows don't start until 2019-09-15 -- every
row from 2017-03 through 2019-09-14 was flagged bad by the NEE quality
flag, not simply absent; real usable coverage is 2019-09-15 ->
2025-06-28.
6. Uploading to HuggingFace
Once real data has been pulled, push it to the HF dataset repo:
hf auth login # if not already logged in
python3 scripts/upload_to_huggingface.py --dry-run # preview first
python3 scripts/upload_to_huggingface.py # real upload
Default target: johnnybwell/neon_OSBS (public). Uploads raw/,
metadata/, and this README.md (rendered by HF as the dataset card) --
not scripts/ (code lives on GitHub) or processed/ (local-only).
7. Known issues and gotchas
Carried forward from neon_CPER/neon_CLBJ, confirmed to still apply:
neonutilities2.0.1 vspandas3.0 incompatibility -- fixed by pinningpandas<3inscripts/requirements.txt.soil_co2's real stacked table name isSCO2C_30_minute, notSCO2C_30min.wind(DP1.00001.001) returns speed and direction in the same stacked table (2DWSD_30min).precipitationusesDP1.00044.001(weighing gauge) -- confirmed OSBS publishes it, 2016-09-26 -> 2025-06-30, 76,800 rows.- Transient
ConnectionErrors under bulk pull volume -- 5 of 11 products failed on the firstdownload_full_history.pypass withConnectionError: Cannot access NEON API; a 90s backoff + individual retry viadownload_neon_product.pycleared all 5. Same pattern CPER documented -- don't assume a bad token/site code if this recurs.
New, OSBS-specific findings from this repo's setup (2026-10-05):
- One eddy covariance month has an incompatible schema and crashes
stack_eddy(). The 2017-02 HDF5 file was generated under an older NEON processing revision (timestamp Dec 2022, vs. Jan 2026+ for every other month) and has a different column layout thatneonutilities==2.0.1'sstack_eddy()can't merge alongside the newer files (ValueError: setting an array element with a sequence... inhomogeneous shape). Not a network/disk/token issue -- re-downloading changes nothing. Fixed by excluding that one file from the staging directory before stacking the rest. If re-running this pull, check for a.h5.gzfile that never got auto-decompressed (another symptom of the same file) and/or a generation timestamp that stands out from the rest, and exclude it rather than assuming the whole pull is broken. - PhenoCam's semantically-obvious ROI name was the wrong pick.
UN_0001("UN" = understory, matching CLBJ'sUN_1000naming for the same product) looked like the right choice by convention, but direct CSV verification showed it's actually a short series retired in 2018 (453 rows, 2016-12-14 -> 2018-03-11) -- the real long-running camera is underGR_1000+GR_2000instead (3,546 rows spanning nearly the full decade). Don't pick a PhenoCam ROI by name pattern alone; check actual date ranges first. See metadata/README.md for the full verification detail on both OSBS PhenoCam products.
8. File naming conventions
Same as neon_CPER/neon_CLBJ:
<SITE>_<product_shortname>_<start_YYYY-MM>_<end_YYYY-MM>.csv
e.g. OSBS_air_temperature_2014-08_2026-08.csv.
PhenoCam CSVs (day granularity, not month):
<SITE>_<alias>_<start_YYYY-MM-DD>_<end_YYYY-MM-DD>.csv
e.g. OSBS_phenocam_canopy_2016-12-15_2026-10-04.csv.
Raw source files from NEON (before this script concatenates them) follow NEON's own convention:
NEON.DOM.SITE.DPL.PRNUM.REV.HOR.VER.TMI.NAME.yyyy-mm.PKGTYPE.GENTIME.csv
OSBS is in NEON domain D03 (Southeast), vs. CPER's D10 (Central
Plains) and CLBJ's D11 (Southern Plains) -- e.g. a PhenoCam id here is
NEON.D03.OSBS.DP1.00033, not NEON.D10.CPER.DP1.00033.
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