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JNRowe/jnrbase | jnrbase/human_time.py | parse_timedelta | def parse_timedelta(__delta: str) -> datetime.timedelta:
"""Parse human readable frequency.
Args:
__delta: Frequency to parse
"""
match = re.fullmatch(r"""
^(\d+(?:|\.\d+)) # value, possibly float
\ *
([hdwmy])$ # units
""", __delta, re.IGNORECASE ... | python | def parse_timedelta(__delta: str) -> datetime.timedelta:
"""Parse human readable frequency.
Args:
__delta: Frequency to parse
"""
match = re.fullmatch(r"""
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tBaxter/tango-articles | build/lib/articles/views.py | process_upload | def process_upload(photo_list, form, parent_object, user, status=''):
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Helper function that actually processes and saves the upload(s).
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political-memory/django-representatives-votes | representatives_votes/contrib/parltrack/import_votes.py | Command.parse_vote_data | def parse_vote_data(self, vote_data):
"""
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"""
if 'epref' not in vote_data.keys():
logger.debug('Could not import data without epref %s',
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return
dossier_pk = self.get... | python | def parse_vote_data(self, vote_data):
"""
Parse data from parltrack votes db dumps (1 proposal)
"""
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logger.debug('Could not import data without epref %s',
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political-memory/django-representatives-votes | representatives_votes/contrib/parltrack/import_votes.py | Command.parse_proposal_data | def parse_proposal_data(self, proposal_data, dossier_pk):
"""Get or Create a proposal model from raw data"""
proposal_display = '{} ({})'.format(proposal_data['title'].encode(
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if 'issue_type' not in proposal_data.keys():
... | python | def parse_proposal_data(self, proposal_data, dossier_pk):
"""Get or Create a proposal model from raw data"""
proposal_display = '{} ({})'.format(proposal_data['title'].encode(
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bluecap-se/yarr.client | yarr_client/app.py | configurate_app | def configurate_app(config_file=''):
"""
Configures Flask app
:param config_file: Absolute path to Py config file, optional
:returns: App object, host and port
"""
# Load config
app.config.from_pyfile('defaults.py')
app.config.from_pyfile(config_file, silent=True)
if app.config.get... | python | def configurate_app(config_file=''):
"""
Configures Flask app
:param config_file: Absolute path to Py config file, optional
:returns: App object, host and port
"""
# Load config
app.config.from_pyfile('defaults.py')
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bluecap-se/yarr.client | yarr_client/app.py | create_request | def create_request(query):
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:returns: Requests object
"""
yarr_url = app.config.get('YARR_URL', False)
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"""
Creates a GET request to Yarr! server
:param query: Free-text search query
:returns: Requests object
"""
yarr_url = app.config.get('YARR_URL', False)
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swgillespie/tsquare | tsquare/core.py | TSquareAPI.requires_authentication | def requires_authentication(func):
"""
Function decorator that throws an exception if the user
is not authenticated, and executes the function normally
if the user is authenticated.
"""
def _auth(self, *args, **kwargs):
if not self._authenticated:
... | python | def requires_authentication(func):
"""
Function decorator that throws an exception if the user
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"""
def _auth(self, *args, **kwargs):
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swgillespie/tsquare | tsquare/core.py | TSquareAPI.get_user_info | def get_user_info(self):
"""
Returns a TSquareUser object representing the currently logged in user.
Throws a NotAuthenticatedException if the user is not authenticated.
"""
response = self._session.get(BASE_URL_TSQUARE + '/user/current.json')
response.raise_for_status() ... | python | def get_user_info(self):
"""
Returns a TSquareUser object representing the currently logged in user.
Throws a NotAuthenticatedException if the user is not authenticated.
"""
response = self._session.get(BASE_URL_TSQUARE + '/user/current.json')
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swgillespie/tsquare | tsquare/core.py | TSquareAPI.get_site_by_id | def get_site_by_id(self, id):
"""
Looks up a site by ID and returns a TSquareSite representing that
object, or throws an exception if no such site is found.
@param id - The entityID of the site to look up
@returns A TSquareSite object
"""
response = self._session.... | python | def get_site_by_id(self, id):
"""
Looks up a site by ID and returns a TSquareSite representing that
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@param id - The entityID of the site to look up
@returns A TSquareSite object
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swgillespie/tsquare | tsquare/core.py | TSquareAPI.get_sites | def get_sites(self, filter_func=lambda x: True):
"""
Returns a list of TSquareSite objects that represent the sites available
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@param filter_func - A function taking in a Site object as a parameter
that returns a True or False, depending on whether
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Returns a list of TSquareSite objects that represent the sites available
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swgillespie/tsquare | tsquare/core.py | TSquareAPI.get_announcements | def get_announcements(self, site=None, num=10, age=20):
"""
Gets announcements from a site if site is not None, or from every
site otherwise. Returns a list of TSquareAnnouncement objects.
@param site_obj (TSquareSite) If non-None, gets only the announcements
... | python | def get_announcements(self, site=None, num=10, age=20):
"""
Gets announcements from a site if site is not None, or from every
site otherwise. Returns a list of TSquareAnnouncement objects.
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swgillespie/tsquare | tsquare/core.py | TSquareAPI.get_tools | def get_tools(self, site):
"""
Gets all tools associated with a site.
@param site (TSquareSite) - The site to search for tools
@returns A list of dictionaries representing Tsquare tools.
"""
# hack - gotta bypass the tsquare REST api because it kinda sucks with tools
... | python | def get_tools(self, site):
"""
Gets all tools associated with a site.
@param site (TSquareSite) - The site to search for tools
@returns A list of dictionaries representing Tsquare tools.
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swgillespie/tsquare | tsquare/core.py | TSquareAPI.get_assignments | def get_assignments(self, site):
"""
Gets a list of assignments associated with a site (class). Returns
a list of TSquareAssignment objects.
@param site (TSquareSite) - The site to use with the assignment query
@returns - A list of TSquareSite objects. May be an empty list if
... | python | def get_assignments(self, site):
"""
Gets a list of assignments associated with a site (class). Returns
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swgillespie/tsquare | tsquare/core.py | TSquareAPI.get_grades | def get_grades(self, site):
"""
Gets a list of grades associated with a site. The return type is a dictionary
whose keys are assignment categories, similar to how the page is laid out
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"""
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"""
Gets a list of grades associated with a site. The return type is a dictionary
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swgillespie/tsquare | tsquare/core.py | TSquareAPI.get_syllabus | def get_syllabus(self, site):
"""
Gets the syllabus for a course. The syllabus may or may not
contain HTML, depending on the site. TSquare does not enforce
whether or not pages are allowed to have HTML, so it is impossible
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"""
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"""
Gets the syllabus for a course. The syllabus may or may not
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FlorianLudwig/rueckenwind | rw/scope.py | setup_app_scope | def setup_app_scope(name, scope):
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# load plugins
plugins = []
for plugin_name, active in get('settings').get('rw.plugins', {}).items():
plugin = __import__(plugin_name)
plugin_path = plugin_name.split('.')[1:] + ['plugin']
for sub in ... | python | def setup_app_scope(name, scope):
"""activate plugins accordingly to config"""
# load plugins
plugins = []
for plugin_name, active in get('settings').get('rw.plugins', {}).items():
plugin = __import__(plugin_name)
plugin_path = plugin_name.split('.')[1:] + ['plugin']
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MacHu-GWU/angora-project | angora/gadget/configuration.py | Configuration.set_section | def set_section(self, section):
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"""
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raise Exception("You")
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MacHu-GWU/angora-project | angora/gadget/configuration.py | Configuration.load | def load(self, path):
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timeyyy/apptools | peasoup/peasoup.py | setup_logger | def setup_logger(log_file, level=logging.DEBUG):
'''One function call to set up logging with some nice logs about the machine'''
cfg = AppBuilder.get_pcfg()
logger = cfg['log_module']
# todo make sure structlog is compliant and that logbook is also the correct name???
assert logger in ("logging", "l... | python | def setup_logger(log_file, level=logging.DEBUG):
'''One function call to set up logging with some nice logs about the machine'''
cfg = AppBuilder.get_pcfg()
logger = cfg['log_module']
# todo make sure structlog is compliant and that logbook is also the correct name???
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timeyyy/apptools | peasoup/peasoup.py | set_windows_permissions | def set_windows_permissions(filename):
'''
At least on windows 7 if a file is created on an Admin account,
Other users will not be given execute or full control.
However if a user creates the file himself it will work...
So just always change permissions after creating a file on windows
Change ... | python | def set_windows_permissions(filename):
'''
At least on windows 7 if a file is created on an Admin account,
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So just always change permissions after creating a file on windows
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timeyyy/apptools | peasoup/peasoup.py | setup_raven | def setup_raven():
'''we setup sentry to get all stuff from our logs'''
pcfg = AppBuilder.get_pcfg()
from raven.handlers.logging import SentryHandler
from raven import Client
from raven.conf import setup_logging
client = Client(pcfg['raven_dsn'])
handler = SentryHandler(client)
# TODO VE... | python | def setup_raven():
'''we setup sentry to get all stuff from our logs'''
pcfg = AppBuilder.get_pcfg()
from raven.handlers.logging import SentryHandler
from raven import Client
from raven.conf import setup_logging
client = Client(pcfg['raven_dsn'])
handler = SentryHandler(client)
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timeyyy/apptools | peasoup/peasoup.py | CfgDict.save | def save(self):
'''saves our config objet to file'''
if self.app.cfg_mode == 'json':
with open(self.app.cfg_file, 'w') as opened_file:
json.dump(self.app.cfg, opened_file)
else:
with open(self.app.cfg_file, 'w')as opened_file:
yaml.dump(sel... | python | def save(self):
'''saves our config objet to file'''
if self.app.cfg_mode == 'json':
with open(self.app.cfg_file, 'w') as opened_file:
json.dump(self.app.cfg, opened_file)
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timeyyy/apptools | peasoup/peasoup.py | AppBuilder.get_pcfg | def get_pcfg():
'''
sets up the config options by reading globals saved in peasoup/global.py
as self.pcfg
'''
path = os.path.dirname(AppBuilder.main_file)
file = os.path.join(path,
PEASOUP_USER_DIR,
PEASOUP_CONFIG_FI... | python | def get_pcfg():
'''
sets up the config options by reading globals saved in peasoup/global.py
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file = os.path.join(path,
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timeyyy/apptools | peasoup/peasoup.py | AppBuilder.create_cfg | def create_cfg(self, cfg_file, defaults=None, mode='json'):
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set mode to json or yaml? probably remove this option..Todo
Creates the config file for your app with default values
The file will only be created if it doesn't exits
also sets up the first_run attribute.
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set mode to json or yaml? probably remove this option..Todo
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timeyyy/apptools | peasoup/peasoup.py | AppBuilder.load_cfg | def load_cfg(self):
'''loads our config object accessible via self.cfg'''
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with open(self.cfg_file) as opened_file:
return json.load(opened_file)
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timeyyy/apptools | peasoup/peasoup.py | AppBuilder._check_first_run | def _check_first_run(self):
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use then app.first_run attribute to check for True or False
'''
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timeyyy/apptools | peasoup/peasoup.py | AppBuilder.get_appdir | def get_appdir(self, portable_path=None, folder=None, create=False):
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timeyyy/apptools | peasoup/peasoup.py | AppBuilder.check_if_open | def check_if_open(self, path=None, appdata=False, verbose=False):
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If you are calling create_cfg() before calling this,
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given so we can save our file there.
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timeyyy/apptools | peasoup/peasoup.py | AppBuilder.release_singleton | def release_singleton(self):
'''deletes the data that lets our program know if it is
running as singleton when calling check_if_open,
i.e check_if_open will return fals after calling this
'''
with suppress(KeyError):
del self.cfg['is_programming_running_info']
... | python | def release_singleton(self):
'''deletes the data that lets our program know if it is
running as singleton when calling check_if_open,
i.e check_if_open will return fals after calling this
'''
with suppress(KeyError):
del self.cfg['is_programming_running_info']
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timeyyy/apptools | peasoup/peasoup.py | AppBuilder.shutdown | def shutdown(self):
''' shutdown operations on exit, this is run by
a finaly statement after the tkinter mainloop ends
call root.quit to get here,
Note you will still need to call sys.exit()
'''
logging.info('Shutdown procedures being run!')
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''' shutdown operations on exit, this is run by
a finaly statement after the tkinter mainloop ends
call root.quit to get here,
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logging.info('Shutdown procedures being run!')
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timeyyy/apptools | peasoup/peasoup.py | AppBuilder.rel_path | def rel_path(*file_path):
'''
gives relative paths to files, works when frozen or unfrozen
to get the root path just pass in the string __file__
'''
if hasattr(sys, 'frozen'):
if file_path[0] == '__file__':
return sys.executable
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'''
gives relative paths to files, works when frozen or unfrozen
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if hasattr(sys, 'frozen'):
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zlobspb/txtarantool | txtarantool.py | Request.pack_int_base128 | def pack_int_base128(cls, value):
"""
Pack integer value using LEB128 encoding
:param value: integer value to encode
:type value: int
:return: encoded value
:rtype: bytes
"""
assert isinstance(value, int)
if value < 1 << 14:
return cls... | python | def pack_int_base128(cls, value):
"""
Pack integer value using LEB128 encoding
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:type value: int
:return: encoded value
:rtype: bytes
"""
assert isinstance(value, int)
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zlobspb/txtarantool | txtarantool.py | Request.pack_str | def pack_str(cls, value):
"""
Pack string field
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:param value: string to be packed
:type value: bytes or str
:return: packed value
:rtype: bytes
"""
assert isinstance(value, str)
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"""
Pack string field
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zlobspb/txtarantool | txtarantool.py | Request.pack_unicode | def pack_unicode(cls, value, charset="utf-8", errors="strict"):
"""
Pack string field
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:param value: string to be packed
:type value: unicode
:return: packed value
:rtype: bytes
"""
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"""
Pack string field
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zlobspb/txtarantool | txtarantool.py | Request.pack_field | def pack_field(self, value):
"""
Pack single field (string or integer value)
<field> ::= <int32_varint><data>
:param value: value to be packed
:type value: bytes, str, int or long
:return: packed value
:rtype: bytes
"""
if isinstance(value, str):... | python | def pack_field(self, value):
"""
Pack single field (string or integer value)
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:param value: tuple to be packed
:type value: tuple of scalar values (bytes, str or int)
:return: packed tuple
:rtype: bytes
"""
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"""
Pack tuple of values
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zlobspb/txtarantool | txtarantool.py | Response._unpack_int_base128 | def _unpack_int_base128(varint, offset):
"""Implement Perl unpack's 'w' option, aka base 128 decoding."""
res = ord(varint[offset])
if ord(varint[offset]) >= 0x80:
offset += 1
res = ((res - 0x80) << 7) + ord(varint[offset])
if ord(varint[offset]) >= 0x80:
... | python | def _unpack_int_base128(varint, offset):
"""Implement Perl unpack's 'w' option, aka base 128 decoding."""
res = ord(varint[offset])
if ord(varint[offset]) >= 0x80:
offset += 1
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zlobspb/txtarantool | txtarantool.py | Response._unpack_tuple | def _unpack_tuple(self, buff):
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"""
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zlobspb/txtarantool | txtarantool.py | Response._unpack_body | def _unpack_body(self, buff):
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"""
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zlobspb/txtarantool | txtarantool.py | Response._cast_field | def _cast_field(self, cast_to, value):
"""
Convert field type from raw bytes to native python type
:param cast_to: native python type to cast to
:type cast_to: a type object (one of bytes, int, unicode (str for py3k))
:param value: raw value from the database
:type value... | python | def _cast_field(self, cast_to, value):
"""
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zlobspb/txtarantool | txtarantool.py | TarantoolProtocol.ping | def ping(self):
"""
send ping packet to tarantool server and receive response with empty body
"""
d = self.replyQueue.get_ping()
packet = RequestPing(self.charset, self.errors)
self.transport.write(bytes(packet))
return d.addCallback(self.handle_reply, self.charse... | python | def ping(self):
"""
send ping packet to tarantool server and receive response with empty body
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zlobspb/txtarantool | txtarantool.py | TarantoolProtocol.insert | def insert(self, space_no, *args):
"""
insert tuple, if primary key exists server will return error
"""
d = self.replyQueue.get()
packet = RequestInsert(self.charset, self.errors, d._ipro_request_id, space_no, Request.TNT_FLAG_ADD, *args)
self.transport.write(bytes(packet... | python | def insert(self, space_no, *args):
"""
insert tuple, if primary key exists server will return error
"""
d = self.replyQueue.get()
packet = RequestInsert(self.charset, self.errors, d._ipro_request_id, space_no, Request.TNT_FLAG_ADD, *args)
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zlobspb/txtarantool | txtarantool.py | TarantoolProtocol.select | def select(self, space_no, index_no, field_types, *args):
"""
select tuple(s)
"""
d = self.replyQueue.get()
packet = RequestSelect(self.charset, self.errors, d._ipro_request_id, space_no, index_no, 0, 0xffffffff, *args)
self.transport.write(bytes(packet))
return d... | python | def select(self, space_no, index_no, field_types, *args):
"""
select tuple(s)
"""
d = self.replyQueue.get()
packet = RequestSelect(self.charset, self.errors, d._ipro_request_id, space_no, index_no, 0, 0xffffffff, *args)
self.transport.write(bytes(packet))
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zlobspb/txtarantool | txtarantool.py | TarantoolProtocol.update | def update(self, space_no, key_tuple, op_list):
"""
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packet = RequestUpdate(self.charset, self.errors, d._ipro_request_id, space_no, 0, key_tuple, op_list)
self.transport.write(bytes(packet))
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"""
send update command(s)
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d = self.replyQueue.get()
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zlobspb/txtarantool | txtarantool.py | TarantoolProtocol.update_ret | def update_ret(self, space_no, field_types, key_tuple, op_list):
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send update command(s), updated tuple(s) is(are) sent back
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zlobspb/txtarantool | txtarantool.py | TarantoolProtocol.delete | def delete(self, space_no, *args):
"""
delete tuple by primary key
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d = self.replyQueue.get()
packet = RequestDelete(self.charset, self.errors, d._ipro_request_id, space_no, 0, *args)
self.transport.write(bytes(packet))
return d.addCallback(self.handle_reply, s... | python | def delete(self, space_no, *args):
"""
delete tuple by primary key
"""
d = self.replyQueue.get()
packet = RequestDelete(self.charset, self.errors, d._ipro_request_id, space_no, 0, *args)
self.transport.write(bytes(packet))
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zlobspb/txtarantool | txtarantool.py | TarantoolProtocol.call | def call(self, proc_name, field_types, *args):
"""
call server procedure
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d = self.replyQueue.get()
packet = RequestCall(self.charset, self.errors, d._ipro_request_id, proc_name, 0, *args)
self.transport.write(bytes(packet))
return d.addCallback(self.handle_rep... | python | def call(self, proc_name, field_types, *args):
"""
call server procedure
"""
d = self.replyQueue.get()
packet = RequestCall(self.charset, self.errors, d._ipro_request_id, proc_name, 0, *args)
self.transport.write(bytes(packet))
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lukaszb/porunga | examples/fibs/fibs.py | fibs | def fibs(n, m):
"""
Yields Fibonacci numbers starting from ``n`` and ending at ``m``.
"""
a = b = 1
for x in range(3, m + 1):
a, b = b, a + b
if x >= n:
yield b | python | def fibs(n, m):
"""
Yields Fibonacci numbers starting from ``n`` and ending at ``m``.
"""
a = b = 1
for x in range(3, m + 1):
a, b = b, a + b
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emencia/emencia-django-countries | emencia/django/countries/migrations/0002_auto_load_initial_data.py | unload_fixture | def unload_fixture(apps, schema_editor):
"""
Brutally deleting all 'Country' model entries for reversing operation
"""
appmodel = apps.get_model(APP_LABEL, COUNTRY_MODELNAME)
appmodel.objects.all().delete() | python | def unload_fixture(apps, schema_editor):
"""
Brutally deleting all 'Country' model entries for reversing operation
"""
appmodel = apps.get_model(APP_LABEL, COUNTRY_MODELNAME)
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picleslivre/plumber | plumber.py | precondition | def precondition(precond):
"""
Runs the callable responsible for making some assertions
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"""
def deco... | python | def precondition(precond):
"""
Runs the callable responsible for making some assertions
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picleslivre/plumber | plumber.py | Pipeline.run | def run(self, data, rewrap=False, prefetch=0):
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Wires the pipeline and returns a lazy object of
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"""
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dillonhicks/rekt | rekt/utils.py | camel_case_to_snake_case | def camel_case_to_snake_case(name):
"""
HelloWorld -> hello_world
"""
s1 = _FIRST_CAP_RE.sub(r'\1_\2', name)
return _ALL_CAP_RE.sub(r'\1_\2', s1).lower() | python | def camel_case_to_snake_case(name):
"""
HelloWorld -> hello_world
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s1 = _FIRST_CAP_RE.sub(r'\1_\2', name)
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dillonhicks/rekt | rekt/utils.py | load_builtin_config | def load_builtin_config(name, module_name=__name__, specs_path=specs.__path__):
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Uses package info magic to find the resource file located in the specs
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"""
config_path = Path(next(iter(specs_path)))
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"""
Uses package info magic to find the resource file located in the specs
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dillonhicks/rekt | rekt/utils.py | load_config | def load_config(path):
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"""
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file_bytes = fi.read()
config = yaml.load(file_bytes.decode('utf-8'))
return config | python | def load_config(path):
"""
Loads a yaml configuration.
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file_bytes = fi.read()
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dillonhicks/rekt | rekt/utils.py | load_swagger_config | def load_swagger_config(name, base_url, config):
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TakesxiSximada/jumon | src/jumon/__init__.py | mkdir | def mkdir(path, parents=False):
"""
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func = os.makedirs if parents else os.mkdir
try:
return func(path)
except:
if not parents:
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"""
parents: no error if existing, make parent directories as needed
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func = os.makedirs if parents else os.mkdir
try:
return func(path)
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TakesxiSximada/jumon | src/jumon/__init__.py | Shell.sudo | def sudo(cls, line, *args, **kwds):
"""
duplicated
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"""
duplicated
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sudo_user = Env.get(Env.JUMON_SUDO)
if sudo_user:
line = 'sudo -u {} {}'.format(sudo_user, line)
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TakesxiSximada/jumon | src/jumon/__init__.py | TransparentOptionParser._process_args | def _process_args(self, largs, rargs, values):
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EwilDawe/typy | typy/mouse.py | move_line | def move_line(x, y, speed = 1):
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:param x: target x-ordinate
:param y: target y-ordinate
:param speed: pixel traversal rate
:return: None
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:param y: target y-ordinate
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EwilDawe/typy | typy/mouse.py | move_arc | def move_arc(x, y, r, speed = 1, orientation = True):
# WARNING: This function currently contains inaccuracy likely due to the rounding of trigonometric functions
"""
Moves the cursor in an arc of radius r to (x, y) at a certain speed
:param x: target x-ordinate
:param y: target y-ordinate
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# WARNING: This function currently contains inaccuracy likely due to the rounding of trigonometric functions
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Moves the cursor in an arc of radius r to (x, y) at a certain speed
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EwilDawe/typy | typy/mouse.py | drag | def drag(*args, function = move):
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Drags the mouse along a specified path
:param args: list of arguments passed to function
:param function: path to traverse
:return: None
"""
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"""
Drags the mouse along a specified path
:param args: list of arguments passed to function
:param function: path to traverse
:return: None
"""
x, y = win32api.GetCursorPos()
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EwilDawe/typy | typy/mouse.py | click_left | def click_left(x = None, y = None, hold_time = 0):
"""
Simulates a mouse left click on pixel (x,y) if x and y are provided
If x and y are not passed to this function, a mouse click is simulated at the current (x,y)
:param x: target x-ordinate
:param y: target y-ordinate
:param hold_time: length... | python | def click_left(x = None, y = None, hold_time = 0):
"""
Simulates a mouse left click on pixel (x,y) if x and y are provided
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EwilDawe/typy | typy/mouse.py | click_right | def click_right(x = None, y = None, hold_time = 0):
"""
Simulates a mouse right click on pixel (x,y) if x and y are provided
If x and y are not passed to this function, a mouse click is simulated at the current (x,y)
:param x: target x-ordinate
:param y: target y-ordinate
:param hold_time: leng... | python | def click_right(x = None, y = None, hold_time = 0):
"""
Simulates a mouse right click on pixel (x,y) if x and y are provided
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mikerhodes/actionqueues | actionqueues/actionqueue.py | ActionQueue.add | def add(self, action):
"""Add an action to the execution queue."""
self._state_machine.transition_to_add()
self._actions.append(action) | python | def add(self, action):
"""Add an action to the execution queue."""
self._state_machine.transition_to_add()
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mikerhodes/actionqueues | actionqueues/actionqueue.py | ActionQueue.execute | def execute(self):
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mikerhodes/actionqueues | actionqueues/actionqueue.py | ActionQueue.rollback | def rollback(self):
"""Call rollback on executed actions."""
self._state_machine.transition_to_rollback()
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mikerhodes/actionqueues | actionqueues/actionqueue.py | ActionQueue.execute_with_retries | def execute_with_retries(self, action, f):
"""Execute function f with single argument action. Retry if
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"""
# Run action until either it succeeds or throws an exception
# that's not an ActionRetryException
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"""Execute function f with single argument action. Retry if
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Vito2015/pyextend | pyextend/network/regex.py | email_match | def email_match(string):
"""邮箱地址匹配. 匹配成功返回(email_name, email_server), 否则返回None"""
m = re.match(email_pattern, string)
if m:
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return m.groups()[0], m.groups()[2]
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# print('Match failed: %s' % string)
return None | python | def email_match(string):
"""邮箱地址匹配. 匹配成功返回(email_name, email_server), 否则返回None"""
m = re.match(email_pattern, string)
if m:
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# print('Match failed: %s' % string)
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shi-cong/PYSTUDY | PYSTUDY/api/google.py | geocode | def geocode(*params):
"""
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:param params:
:return:
"""
http = HTTP()
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headers = {
'Accept':'text/html,application/xhtml+xml,application/xml;q=0.9,image/webp,image/apng,*/*;q=0.8',
'Accept-Encodi... | python | def geocode(*params):
"""
遗憾的是拥有GFW的存在，导致本代码无法运行和测试。
:param params:
:return:
"""
http = HTTP()
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headers = {
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minhhh/pelican_git | pelican_git/plugin.py | fetch_git | def fetch_git(repo, filename, branch="master", hash=None):
"""Fetch a gist and return the contents as a string."""
url = git_url(repo, filename, branch, hash)
response = requests.get(url)
if response.status_code != 200:
raise Exception('Got a bad status looking up gist.')
body = response.te... | python | def fetch_git(repo, filename, branch="master", hash=None):
"""Fetch a gist and return the contents as a string."""
url = git_url(repo, filename, branch, hash)
response = requests.get(url)
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minhhh/pelican_git | pelican_git/plugin.py | setup_git | def setup_git(pelican):
"""Setup the default settings."""
pelican.settings.setdefault('GIT_CACHE_ENABLED', False)
pelican.settings.setdefault('GIT_CACHE_LOCATION',
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# Make sure the cache directory exists
cache_base = pelican.settings.get('GIT_CACHE_L... | python | def setup_git(pelican):
"""Setup the default settings."""
pelican.settings.setdefault('GIT_CACHE_ENABLED', False)
pelican.settings.setdefault('GIT_CACHE_LOCATION',
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minhhh/pelican_git | pelican_git/plugin.py | replace_git_url | def replace_git_url(generator):
"""Replace gist tags in the article content."""
template = g_jinja2.get_template(GIT_TEMPLATE)
should_cache = generator.context.get('GIT_CACHE_ENABLED')
cache_location = generator.context.get('GIT_CACHE_LOCATION')
for article in generator.articles:
for match... | python | def replace_git_url(generator):
"""Replace gist tags in the article content."""
template = g_jinja2.get_template(GIT_TEMPLATE)
should_cache = generator.context.get('GIT_CACHE_ENABLED')
cache_location = generator.context.get('GIT_CACHE_LOCATION')
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minhhh/pelican_git | pelican_git/plugin.py | register | def register():
"""Plugin registration."""
from pelican import signals
signals.initialized.connect(setup_git)
signals.article_generator_finalized.connect(replace_git_url) | python | def register():
"""Plugin registration."""
from pelican import signals
signals.initialized.connect(setup_git)
signals.article_generator_finalized.connect(replace_git_url) | [
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clearclaw/logtool | logtool/logtime.py | time_str | def time_str (time_t, slug = False):
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aquatix/python-utilkit | utilkit/stringutil.py | safe_unicode | def safe_unicode(obj, *args):
""" return the unicode representation of obj """
try:
return unicode(obj, *args) # noqa for undefined-variable
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# obj is byte string
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""" return the unicode representation of obj """
try:
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kathyxchen/crosstalk-correction | crosstalk_correction/crosstalk_correction.py | crosstalk_correction | def crosstalk_correction(pathway_definitions,
random_seed=2015,
gene_set=set(),
all_genes=True,
max_iters=1000):
"""A wrapper function around the maximum impact estimation algorithm.
Parameters
-----------
... | python | def crosstalk_correction(pathway_definitions,
random_seed=2015,
gene_set=set(),
all_genes=True,
max_iters=1000):
"""A wrapper function around the maximum impact estimation algorithm.
Parameters
-----------
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kathyxchen/crosstalk-correction | crosstalk_correction/crosstalk_correction.py | maximum_impact_estimation | def maximum_impact_estimation(membership_matrix, max_iters=1000):
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kathyxchen/crosstalk-correction | crosstalk_correction/crosstalk_correction.py | initialize_membership_matrix | def initialize_membership_matrix(gene_row_names, pathway_definitions):
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kathyxchen/crosstalk-correction | crosstalk_correction/crosstalk_correction.py | index_element_map | def index_element_map(arr):
"""Map the indices of the array to the respective elements.
Parameters
-----------
arr : list(a)
The array to process, of generic type a
Returns
-----------
dict(int -> a), a dictionary corresponding the index to the element
"""
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"""Map the indices of the array to the respective elements.
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arr : list(a)
The array to process, of generic type a
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dict(int -> a), a dictionary corresponding the index to the element
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kathyxchen/crosstalk-correction | crosstalk_correction/crosstalk_correction.py | _apply_correction_on_genes | def _apply_correction_on_genes(genes,
pathway_column_names,
pathway_definitions):
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kathyxchen/crosstalk-correction | crosstalk_correction/crosstalk_correction.py | _update_pathway_definitions | def _update_pathway_definitions(crosstalk_corrected_index_map,
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kathyxchen/crosstalk-correction | crosstalk_correction/crosstalk_correction.py | _update_probabilities | def _update_probabilities(pr, membership_matrix):
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Parameters
-----------
pr : numpy.array(float), shape = [k]
The current vector of probabilities. An element at index j,
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"""Updates the probability vector for each iteration of the
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pr : numpy.array(float), shape = [k]
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kathyxchen/crosstalk-correction | crosstalk_correction/crosstalk_correction.py | _replace_zeros | def _replace_zeros(arr, default_min_value):
"""Substitute 0s in the list with a near-zero value.
Parameters
-----------
arr : numpy.array(float)
default_min_value : float
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Returns
... | python | def _replace_zeros(arr, default_min_value):
"""Substitute 0s in the list with a near-zero value.
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arr : numpy.array(float)
default_min_value : float
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listen-lavender/webcrawl | webcrawl/task.py | patch_thread | def patch_thread(threading=True, _threading_local=True, Queue=True, Event=False):
"""Replace the standard :mod:`thread` module to make it greenlet-based.
If *threading* is true (the default), also patch ``threading``.
If *_threading_local* is true (the default), also patch ``_threading_local.local``.
... | python | def patch_thread(threading=True, _threading_local=True, Queue=True, Event=False):
"""Replace the standard :mod:`thread` module to make it greenlet-based.
If *threading* is true (the default), also patch ``threading``.
If *_threading_local* is true (the default), also patch ``_threading_local.local``.
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shi-cong/PYSTUDY | PYSTUDY/ml/knnlib.py | classify | def classify(in_x, groups, labels, k):
"""分类"""
# 计算欧式距离
gl = array_len(groups)
tmp = tile(in_x, (gl, 1)) - groups
tmp = exponential_operation(tmp, 2)
tmp = array_sum(tmp)
tmp = exponential_operation(tmp, 0.5)
# 得到排序后的数组的索引
arg = argsort(tmp)
# 计算最相似数据的前k个数据的分类次数
cc = odict... | python | def classify(in_x, groups, labels, k):
"""分类"""
# 计算欧式距离
gl = array_len(groups)
tmp = tile(in_x, (gl, 1)) - groups
tmp = exponential_operation(tmp, 2)
tmp = array_sum(tmp)
tmp = exponential_operation(tmp, 0.5)
# 得到排序后的数组的索引
arg = argsort(tmp)
# 计算最相似数据的前k个数据的分类次数
cc = odict... | [
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DasIch/argvard | argvard/annotations.py | annotations | def annotations(from_defaults=True, **kwargs):
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noobermin/lspreader | bin/pmov.py | hdfoutput | def hdfoutput(outname, frames, dozip=False):
'''Outputs the frames to an hdf file.'''
with h5.File(outname,'a') as f:
for frame in frames:
group=str(frame['step']);
h5w(f, frame, group=group,
compression='lzf' if dozip else None); | python | def hdfoutput(outname, frames, dozip=False):
'''Outputs the frames to an hdf file.'''
with h5.File(outname,'a') as f:
for frame in frames:
group=str(frame['step']);
h5w(f, frame, group=group,
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cdeboever3/cdpybio | cdpybio/bedtools.py | beds_to_boolean | def beds_to_boolean(beds, ref=None, beds_sorted=False, ref_sorted=False,
**kwargs):
"""
Compare a list of bed files or BedTool objects to a reference bed file and
create a boolean matrix where each row is an interval and each column is a 1
if that file has an interval that overlaps t... | python | def beds_to_boolean(beds, ref=None, beds_sorted=False, ref_sorted=False,
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"""
Compare a list of bed files or BedTool objects to a reference bed file and
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cdeboever3/cdpybio | cdpybio/bedtools.py | combine | def combine(beds, beds_sorted=False, postmerge=True):
"""
Combine a list of bed files or BedTool objects into a single BedTool object.
Parameters
----------
beds : list
List of paths to bed files or BedTool objects.
beds_sorted : boolean
Whether the bed files in beds are alread... | python | def combine(beds, beds_sorted=False, postmerge=True):
"""
Combine a list of bed files or BedTool objects into a single BedTool object.
Parameters
----------
beds : list
List of paths to bed files or BedTool objects.
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Whether the bed files in beds are alread... | [
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cdeboever3/cdpybio | cdpybio/bedtools.py | write_bed_with_trackline | def write_bed_with_trackline(bed, out, trackline, add_chr=False):
"""
Read a bed file and write a copy with a trackline. Here's a simple trackline
example: 'track type=bed name="cool" description="A cool track."'
Parameters
----------
bed : str
Input bed file name.
out : str
... | python | def write_bed_with_trackline(bed, out, trackline, add_chr=False):
"""
Read a bed file and write a copy with a trackline. Here's a simple trackline
example: 'track type=bed name="cool" description="A cool track."'
Parameters
----------
bed : str
Input bed file name.
out : str
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cdeboever3/cdpybio | cdpybio/bedtools.py | strip_chr | def strip_chr(bt):
"""Strip 'chr' from chromosomes for BedTool object
Parameters
----------
bt : pybedtools.BedTool
BedTool to strip 'chr' from.
Returns
-------
out : pybedtools.BedTool
New BedTool with 'chr' stripped from chromosome names.
"""
try:
df = pd... | python | def strip_chr(bt):
"""Strip 'chr' from chromosomes for BedTool object
Parameters
----------
bt : pybedtools.BedTool
BedTool to strip 'chr' from.
Returns
-------
out : pybedtools.BedTool
New BedTool with 'chr' stripped from chromosome names.
"""
try:
df = pd... | [
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cdeboever3/cdpybio | cdpybio/bedtools.py | intervals_to_bed | def intervals_to_bed(intervals):
"""
Convert list of intervals of format chr1:100-200 or chr1:100-200:+ to
BedTool object.
Parameters
----------
intervals : array-like
List of intervals.
Returns
-------
bt : pybedtools.BedTool
BedTool with one line for each interva... | python | def intervals_to_bed(intervals):
"""
Convert list of intervals of format chr1:100-200 or chr1:100-200:+ to
BedTool object.
Parameters
----------
intervals : array-like
List of intervals.
Returns
-------
bt : pybedtools.BedTool
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