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gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.hmap_dt
def hmap_dt(self): # used for CSV export """ :returns: a composite dtype (imt, poe) """ return numpy.dtype([('%s-%s' % (imt, poe), F32) for imt in self.imtls for poe in self.poes])
python
def hmap_dt(self): # used for CSV export """ :returns: a composite dtype (imt, poe) """ return numpy.dtype([('%s-%s' % (imt, poe), F32) for imt in self.imtls for poe in self.poes])
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:returns: a composite dtype (imt, poe)
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commonlib/oqvalidation.py#L435-L440
gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.uhs_dt
def uhs_dt(self): # used for CSV and NPZ export """ :returns: a composity dtype (poe, imt) """ imts_dt = numpy.dtype([(imt, F32) for imt in self.imtls if imt.startswith(('PGA', 'SA'))]) return numpy.dtype([(str(poe), imts_dt) for poe in self.poes])
python
def uhs_dt(self): # used for CSV and NPZ export """ :returns: a composity dtype (poe, imt) """ imts_dt = numpy.dtype([(imt, F32) for imt in self.imtls if imt.startswith(('PGA', 'SA'))]) return numpy.dtype([(str(poe), imts_dt) for poe in self.poes])
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:returns: a composity dtype (poe, imt)
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commonlib/oqvalidation.py#L442-L448
gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.imt_periods
def imt_periods(self): """ :returns: the IMTs with a period, as objects """ imts = [] for im in self.imtls: imt = from_string(im) if hasattr(imt, 'period'): imts.append(imt) return imts
python
def imt_periods(self): """ :returns: the IMTs with a period, as objects """ imts = [] for im in self.imtls: imt = from_string(im) if hasattr(imt, 'period'): imts.append(imt) return imts
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:returns: the IMTs with a period, as objects
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commonlib/oqvalidation.py#L450-L459
gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.imt_dt
def imt_dt(self, dtype=F64): """ :returns: a numpy dtype {imt: float} """ return numpy.dtype([(imt, dtype) for imt in self.imtls])
python
def imt_dt(self, dtype=F64): """ :returns: a numpy dtype {imt: float} """ return numpy.dtype([(imt, dtype) for imt in self.imtls])
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:returns: a numpy dtype {imt: float}
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commonlib/oqvalidation.py#L461-L465
gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.lti
def lti(self): """ Dictionary extended_loss_type -> extended_loss_type index """ return {lt: i for i, (lt, dt) in enumerate(self.loss_dt_list())}
python
def lti(self): """ Dictionary extended_loss_type -> extended_loss_type index """ return {lt: i for i, (lt, dt) in enumerate(self.loss_dt_list())}
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Dictionary extended_loss_type -> extended_loss_type index
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commonlib/oqvalidation.py#L468-L472
gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.loss_dt_list
def loss_dt_list(self, dtype=F32): """ Return a data type list [(loss_name, dtype), ...] """ loss_types = self.all_cost_types dts = [(str(lt), dtype) for lt in loss_types] return dts
python
def loss_dt_list(self, dtype=F32): """ Return a data type list [(loss_name, dtype), ...] """ loss_types = self.all_cost_types dts = [(str(lt), dtype) for lt in loss_types] return dts
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Return a data type list [(loss_name, dtype), ...]
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commonlib/oqvalidation.py#L480-L486
gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.loss_maps_dt
def loss_maps_dt(self, dtype=F32): """ Return a composite data type for loss maps """ ltypes = self.loss_dt(dtype).names lst = [('poe-%s' % poe, dtype) for poe in self.conditional_loss_poes] return numpy.dtype([(lt, lst) for lt in ltypes])
python
def loss_maps_dt(self, dtype=F32): """ Return a composite data type for loss maps """ ltypes = self.loss_dt(dtype).names lst = [('poe-%s' % poe, dtype) for poe in self.conditional_loss_poes] return numpy.dtype([(lt, lst) for lt in ltypes])
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Return a composite data type for loss maps
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commonlib/oqvalidation.py#L488-L494
gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.gmf_data_dt
def gmf_data_dt(self): """ Return a composite data type for the GMFs """ return numpy.dtype( [('rlzi', U16), ('sid', U32), ('eid', U64), ('gmv', (F32, (len(self.imtls),)))])
python
def gmf_data_dt(self): """ Return a composite data type for the GMFs """ return numpy.dtype( [('rlzi', U16), ('sid', U32), ('eid', U64), ('gmv', (F32, (len(self.imtls),)))])
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Return a composite data type for the GMFs
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commonlib/oqvalidation.py#L496-L502
gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.no_imls
def no_imls(self): """ Return True if there are no intensity measure levels """ return all(numpy.isnan(ls).any() for ls in self.imtls.values())
python
def no_imls(self): """ Return True if there are no intensity measure levels """ return all(numpy.isnan(ls).any() for ls in self.imtls.values())
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Return True if there are no intensity measure levels
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commonlib/oqvalidation.py#L504-L508
gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.correl_model
def correl_model(self): """ Return a correlation object. See :mod:`openquake.hazardlib.correlation` for more info. """ correl_name = self.ground_motion_correlation_model if correl_name is None: # no correlation model return correl_model_cls = getattr(...
python
def correl_model(self): """ Return a correlation object. See :mod:`openquake.hazardlib.correlation` for more info. """ correl_name = self.ground_motion_correlation_model if correl_name is None: # no correlation model return correl_model_cls = getattr(...
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Return a correlation object. See :mod:`openquake.hazardlib.correlation` for more info.
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train
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gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.get_kinds
def get_kinds(self, kind, R): """ Yield 'rlz-000', 'rlz-001', ...', 'mean', 'quantile-0.1', ... """ stats = self.hazard_stats() if kind == 'stats': yield from stats return elif kind == 'rlzs': for r in range(R): yield 'r...
python
def get_kinds(self, kind, R): """ Yield 'rlz-000', 'rlz-001', ...', 'mean', 'quantile-0.1', ... """ stats = self.hazard_stats() if kind == 'stats': yield from stats return elif kind == 'rlzs': for r in range(R): yield 'r...
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Yield 'rlz-000', 'rlz-001', ...', 'mean', 'quantile-0.1', ...
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train
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gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.hazard_stats
def hazard_stats(self): """ Return a list of item with the statistical functions defined for the hazard calculation """ names = [] # name of statistical functions funcs = [] # statistical functions of kind func(values, weights) if self.mean_hazard_curves: ...
python
def hazard_stats(self): """ Return a list of item with the statistical functions defined for the hazard calculation """ names = [] # name of statistical functions funcs = [] # statistical functions of kind func(values, weights) if self.mean_hazard_curves: ...
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Return a list of item with the statistical functions defined for the hazard calculation
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train
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gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.is_valid_geometry
def is_valid_geometry(self): """ It is possible to infer the geometry only if exactly one of sites, sites_csv, hazard_curves_csv, gmfs_csv, region is set. You did set more than one, or nothing. """ has_sites = (self.sites is not None or 'sites' in self.inputs ...
python
def is_valid_geometry(self): """ It is possible to infer the geometry only if exactly one of sites, sites_csv, hazard_curves_csv, gmfs_csv, region is set. You did set more than one, or nothing. """ has_sites = (self.sites is not None or 'sites' in self.inputs ...
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It is possible to infer the geometry only if exactly one of sites, sites_csv, hazard_curves_csv, gmfs_csv, region is set. You did set more than one, or nothing.
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commonlib/oqvalidation.py#L595-L622
gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.is_valid_poes
def is_valid_poes(self): """ When computing hazard maps and/or uniform hazard spectra, the poes list must be non-empty. """ if self.hazard_maps or self.uniform_hazard_spectra: return bool(self.poes) else: return True
python
def is_valid_poes(self): """ When computing hazard maps and/or uniform hazard spectra, the poes list must be non-empty. """ if self.hazard_maps or self.uniform_hazard_spectra: return bool(self.poes) else: return True
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When computing hazard maps and/or uniform hazard spectra, the poes list must be non-empty.
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train
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gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.is_valid_maximum_distance
def is_valid_maximum_distance(self): """ Invalid maximum_distance={maximum_distance}: {error} """ if 'gsim_logic_tree' not in self.inputs: return True # don't apply validation gsim_lt = self.inputs['gsim_logic_tree'] trts = set(self.maximum_distance) ...
python
def is_valid_maximum_distance(self): """ Invalid maximum_distance={maximum_distance}: {error} """ if 'gsim_logic_tree' not in self.inputs: return True # don't apply validation gsim_lt = self.inputs['gsim_logic_tree'] trts = set(self.maximum_distance) ...
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Invalid maximum_distance={maximum_distance}: {error}
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commonlib/oqvalidation.py#L634-L658
gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.is_valid_intensity_measure_types
def is_valid_intensity_measure_types(self): """ If the IMTs and levels are extracted from the risk models, they must not be set directly. Moreover, if `intensity_measure_types_and_levels` is set directly, `intensity_measure_types` must not be set. """ if self.grou...
python
def is_valid_intensity_measure_types(self): """ If the IMTs and levels are extracted from the risk models, they must not be set directly. Moreover, if `intensity_measure_types_and_levels` is set directly, `intensity_measure_types` must not be set. """ if self.grou...
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If the IMTs and levels are extracted from the risk models, they must not be set directly. Moreover, if `intensity_measure_types_and_levels` is set directly, `intensity_measure_types` must not be set.
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train
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gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.is_valid_intensity_measure_levels
def is_valid_intensity_measure_levels(self): """ In order to compute hazard curves, `intensity_measure_types_and_levels` must be set or extracted from the risk models. """ invalid = self.no_imls() and not self.risk_files and ( self.hazard_curves_from_gmfs or self.calc...
python
def is_valid_intensity_measure_levels(self): """ In order to compute hazard curves, `intensity_measure_types_and_levels` must be set or extracted from the risk models. """ invalid = self.no_imls() and not self.risk_files and ( self.hazard_curves_from_gmfs or self.calc...
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In order to compute hazard curves, `intensity_measure_types_and_levels` must be set or extracted from the risk models.
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train
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gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.is_valid_export_dir
def is_valid_export_dir(self): """ export_dir={export_dir} must refer to a directory, and the user must have the permission to write on it. """ if self.export_dir and not os.path.isabs(self.export_dir): self.export_dir = os.path.normpath( os.path.join(...
python
def is_valid_export_dir(self): """ export_dir={export_dir} must refer to a directory, and the user must have the permission to write on it. """ if self.export_dir and not os.path.isabs(self.export_dir): self.export_dir = os.path.normpath( os.path.join(...
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export_dir={export_dir} must refer to a directory, and the user must have the permission to write on it.
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train
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gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.is_valid_sites
def is_valid_sites(self): """ The sites are overdetermined """ if 'site_model' in self.inputs and 'sites' in self.inputs: return False elif 'site_model' in self.inputs and self.sites: return False elif 'sites' in self.inputs and self.sites: ...
python
def is_valid_sites(self): """ The sites are overdetermined """ if 'site_model' in self.inputs and 'sites' in self.inputs: return False elif 'site_model' in self.inputs and self.sites: return False elif 'sites' in self.inputs and self.sites: ...
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The sites are overdetermined
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train
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gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.is_valid_complex_fault_mesh_spacing
def is_valid_complex_fault_mesh_spacing(self): """ The `complex_fault_mesh_spacing` parameter can be None only if `rupture_mesh_spacing` is set. In that case it is identified with it. """ rms = getattr(self, 'rupture_mesh_spacing', None) if rms and not getattr(self, 'comp...
python
def is_valid_complex_fault_mesh_spacing(self): """ The `complex_fault_mesh_spacing` parameter can be None only if `rupture_mesh_spacing` is set. In that case it is identified with it. """ rms = getattr(self, 'rupture_mesh_spacing', None) if rms and not getattr(self, 'comp...
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gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.is_valid_optimize_same_id_sources
def is_valid_optimize_same_id_sources(self): """ The `optimize_same_id_sources` can be true only in the classical calculators. """ if (self.optimize_same_id_sources and 'classical' in self.calculation_mode or 'disagg' in self.calculation_mode): ...
python
def is_valid_optimize_same_id_sources(self): """ The `optimize_same_id_sources` can be true only in the classical calculators. """ if (self.optimize_same_id_sources and 'classical' in self.calculation_mode or 'disagg' in self.calculation_mode): ...
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gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.check_missing
def check_missing(self, param, action): """ Make sure the given parameter is missing in the job.ini file """ assert action in ('debug', 'info', 'warn', 'error'), action if self.inputs.get(param): msg = '%s_file in %s is ignored in %s' % ( param, self.i...
python
def check_missing(self, param, action): """ Make sure the given parameter is missing in the job.ini file """ assert action in ('debug', 'info', 'warn', 'error'), action if self.inputs.get(param): msg = '%s_file in %s is ignored in %s' % ( param, self.i...
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gem/oq-engine
openquake/commonlib/oqvalidation.py
OqParam.hazard_precomputed
def hazard_precomputed(self): """ :returns: True if the hazard is precomputed """ if 'gmfs' in self.inputs or 'hazard_curves' in self.inputs: return True elif self.hazard_calculation_id: parent = list(util.read(self.hazard_calculation_id)) retu...
python
def hazard_precomputed(self): """ :returns: True if the hazard is precomputed """ if 'gmfs' in self.inputs or 'hazard_curves' in self.inputs: return True elif self.hazard_calculation_id: parent = list(util.read(self.hazard_calculation_id)) retu...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
get_set_num_ruptures
def get_set_num_ruptures(src): """ Extract the number of ruptures and set it """ if not src.num_ruptures: t0 = time.time() src.num_ruptures = src.count_ruptures() dt = time.time() - t0 clsname = src.__class__.__name__ if dt > 10: if 'Area' in clsname: ...
python
def get_set_num_ruptures(src): """ Extract the number of ruptures and set it """ if not src.num_ruptures: t0 = time.time() src.num_ruptures = src.count_ruptures() dt = time.time() - t0 clsname = src.__class__.__name__ if dt > 10: if 'Area' in clsname: ...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
split_coords_2d
def split_coords_2d(seq): """ :param seq: a flat list with lons and lats :returns: a validated list of pairs (lon, lat) >>> split_coords_2d([1.1, 2.1, 2.2, 2.3]) [(1.1, 2.1), (2.2, 2.3)] """ lons, lats = [], [] for i, el in enumerate(seq): if i % 2 == 0: lons.append(...
python
def split_coords_2d(seq): """ :param seq: a flat list with lons and lats :returns: a validated list of pairs (lon, lat) >>> split_coords_2d([1.1, 2.1, 2.2, 2.3]) [(1.1, 2.1), (2.2, 2.3)] """ lons, lats = [], [] for i, el in enumerate(seq): if i % 2 == 0: lons.append(...
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:param seq: a flat list with lons and lats :returns: a validated list of pairs (lon, lat) >>> split_coords_2d([1.1, 2.1, 2.2, 2.3]) [(1.1, 2.1), (2.2, 2.3)]
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
split_coords_3d
def split_coords_3d(seq): """ :param seq: a flat list with lons, lats and depths :returns: a validated list of (lon, lat, depths) triplets >>> split_coords_3d([1.1, 2.1, 0.1, 2.3, 2.4, 0.1]) [(1.1, 2.1, 0.1), (2.3, 2.4, 0.1)] """ lons, lats, depths = [], [], [] for i, el in enumerate(se...
python
def split_coords_3d(seq): """ :param seq: a flat list with lons, lats and depths :returns: a validated list of (lon, lat, depths) triplets >>> split_coords_3d([1.1, 2.1, 0.1, 2.3, 2.4, 0.1]) [(1.1, 2.1, 0.1), (2.3, 2.4, 0.1)] """ lons, lats, depths = [], [], [] for i, el in enumerate(se...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
dists
def dists(node): """ :returns: hpdist, npdist and magScaleRel from the given pointSource node """ hd = tuple((node['probability'], node['depth']) for node in node.hypoDepthDist) npd = tuple( ((node['probability'], node['rake'], node['strike'], node['dip'])) for node in...
python
def dists(node): """ :returns: hpdist, npdist and magScaleRel from the given pointSource node """ hd = tuple((node['probability'], node['depth']) for node in node.hypoDepthDist) npd = tuple( ((node['probability'], node['rake'], node['strike'], node['dip'])) for node in...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
mfds2multimfd
def mfds2multimfd(mfds): """ Convert a list of MFD nodes into a single MultiMFD node """ _, kind = mfds[0].tag.split('}') node = Node('multiMFD', dict(kind=kind, size=len(mfds))) lengths = None for field in mfd.multi_mfd.ASSOC[kind][1:]: alias = mfd.multi_mfd.ALIAS.get(field, field) ...
python
def mfds2multimfd(mfds): """ Convert a list of MFD nodes into a single MultiMFD node """ _, kind = mfds[0].tag.split('}') node = Node('multiMFD', dict(kind=kind, size=len(mfds))) lengths = None for field in mfd.multi_mfd.ASSOC[kind][1:]: alias = mfd.multi_mfd.ALIAS.get(field, field) ...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
update_source_model
def update_source_model(sm_node, fname): """ :param sm_node: a sourceModel Node object containing sourceGroups """ i = 0 for group in sm_node: if 'srcs_weights' in group.attrib: raise InvalidFile('srcs_weights must be removed in %s' % fname) if not group.tag.endswith('sou...
python
def update_source_model(sm_node, fname): """ :param sm_node: a sourceModel Node object containing sourceGroups """ i = 0 for group in sm_node: if 'srcs_weights' in group.attrib: raise InvalidFile('srcs_weights must be removed in %s' % fname) if not group.tag.endswith('sou...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
to_python
def to_python(fname, converter): """ Convert a source model .hdf5 file into a :class:`SourceModel` object """ with hdf5.File(fname, 'r') as f: source_model = f['/'] for sg in source_model: for src in sg: if hasattr(src, 'mfd'): # multipoint source ...
python
def to_python(fname, converter): """ Convert a source model .hdf5 file into a :class:`SourceModel` object """ with hdf5.File(fname, 'r') as f: source_model = f['/'] for sg in source_model: for src in sg: if hasattr(src, 'mfd'): # multipoint source ...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceGroup.collect
def collect(cls, sources): """ :param sources: dictionaries with a key 'tectonicRegion' :returns: an ordered list of SourceGroup instances """ source_stats_dict = {} for src in sources: trt = src['tectonicRegion'] if trt not in source_stats_dict: ...
python
def collect(cls, sources): """ :param sources: dictionaries with a key 'tectonicRegion' :returns: an ordered list of SourceGroup instances """ source_stats_dict = {} for src in sources: trt = src['tectonicRegion'] if trt not in source_stats_dict: ...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceGroup.update
def update(self, src): """ Update the attributes sources, min_mag, max_mag according to the given source. :param src: an instance of :class: `openquake.hazardlib.source.base.BaseSeismicSource` """ assert src.tectonic_region_type == self.trt, ( ...
python
def update(self, src): """ Update the attributes sources, min_mag, max_mag according to the given source. :param src: an instance of :class: `openquake.hazardlib.source.base.BaseSeismicSource` """ assert src.tectonic_region_type == self.trt, ( ...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
RuptureConverter.convert_node
def convert_node(self, node): """ Convert the given rupture node into a hazardlib rupture, depending on the node tag. :param node: a node representing a rupture """ convert = getattr(self, 'convert_' + striptag(node.tag)) return convert(node)
python
def convert_node(self, node): """ Convert the given rupture node into a hazardlib rupture, depending on the node tag. :param node: a node representing a rupture """ convert = getattr(self, 'convert_' + striptag(node.tag)) return convert(node)
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
RuptureConverter.geo_line
def geo_line(self, edge): """ Utility function to convert a node of kind edge into a :class:`openquake.hazardlib.geo.Line` instance. :param edge: a node describing an edge """ with context(self.fname, edge.LineString.posList) as plist: coords = split_coords_2...
python
def geo_line(self, edge): """ Utility function to convert a node of kind edge into a :class:`openquake.hazardlib.geo.Line` instance. :param edge: a node describing an edge """ with context(self.fname, edge.LineString.posList) as plist: coords = split_coords_2...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
RuptureConverter.geo_lines
def geo_lines(self, edges): """ Utility function to convert a list of edges into a list of :class:`openquake.hazardlib.geo.Line` instances. :param edge: a node describing an edge """ lines = [] for edge in edges: with context(self.fname, edge): ...
python
def geo_lines(self, edges): """ Utility function to convert a list of edges into a list of :class:`openquake.hazardlib.geo.Line` instances. :param edge: a node describing an edge """ lines = [] for edge in edges: with context(self.fname, edge): ...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
RuptureConverter.geo_planar
def geo_planar(self, surface): """ Utility to convert a PlanarSurface node with subnodes topLeft, topRight, bottomLeft, bottomRight into a :class:`openquake.hazardlib.geo.PlanarSurface` instance. :param surface: PlanarSurface node """ with context(self.fname, sur...
python
def geo_planar(self, surface): """ Utility to convert a PlanarSurface node with subnodes topLeft, topRight, bottomLeft, bottomRight into a :class:`openquake.hazardlib.geo.PlanarSurface` instance. :param surface: PlanarSurface node """ with context(self.fname, sur...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
RuptureConverter.convert_surfaces
def convert_surfaces(self, surface_nodes): """ Utility to convert a list of surface nodes into a single hazardlib surface. There are four possibilities: 1. there is a single simpleFaultGeometry node; returns a :class:`openquake.hazardlib.geo.simpleFaultSurface` instance ...
python
def convert_surfaces(self, surface_nodes): """ Utility to convert a list of surface nodes into a single hazardlib surface. There are four possibilities: 1. there is a single simpleFaultGeometry node; returns a :class:`openquake.hazardlib.geo.simpleFaultSurface` instance ...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
RuptureConverter.convert_simpleFaultRupture
def convert_simpleFaultRupture(self, node): """ Convert a simpleFaultRupture node. :param node: the rupture node """ mag, rake, hypocenter = self.get_mag_rake_hypo(node) with context(self.fname, node): surfaces = [node.simpleFaultGeometry] rupt = sour...
python
def convert_simpleFaultRupture(self, node): """ Convert a simpleFaultRupture node. :param node: the rupture node """ mag, rake, hypocenter = self.get_mag_rake_hypo(node) with context(self.fname, node): surfaces = [node.simpleFaultGeometry] rupt = sour...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
RuptureConverter.convert_multiPlanesRupture
def convert_multiPlanesRupture(self, node): """ Convert a multiPlanesRupture node. :param node: the rupture node """ mag, rake, hypocenter = self.get_mag_rake_hypo(node) with context(self.fname, node): surfaces = list(node.getnodes('planarSurface')) r...
python
def convert_multiPlanesRupture(self, node): """ Convert a multiPlanesRupture node. :param node: the rupture node """ mag, rake, hypocenter = self.get_mag_rake_hypo(node) with context(self.fname, node): surfaces = list(node.getnodes('planarSurface')) r...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
RuptureConverter.convert_ruptureCollection
def convert_ruptureCollection(self, node): """ :param node: a ruptureCollection node :returns: a dictionary grp_id -> EBRuptures """ coll = {} for grpnode in node: grp_id = int(grpnode['id']) coll[grp_id] = ebrs = [] for node in grpnode...
python
def convert_ruptureCollection(self, node): """ :param node: a ruptureCollection node :returns: a dictionary grp_id -> EBRuptures """ coll = {} for grpnode in node: grp_id = int(grpnode['id']) coll[grp_id] = ebrs = [] for node in grpnode...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceConverter.get_tom
def get_tom(self, node): """ Convert the given node into a Temporal Occurrence Model object. :param node: a node of kind poissonTOM or brownianTOM :returns: a :class:`openquake.hazardlib.mfd.EvenlyDiscretizedMFD.` or :class:`openquake.hazardlib.mfd.TruncatedGRMFD` inst...
python
def get_tom(self, node): """ Convert the given node into a Temporal Occurrence Model object. :param node: a node of kind poissonTOM or brownianTOM :returns: a :class:`openquake.hazardlib.mfd.EvenlyDiscretizedMFD.` or :class:`openquake.hazardlib.mfd.TruncatedGRMFD` inst...
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train
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceConverter.convert_mfdist
def convert_mfdist(self, node): """ Convert the given node into a Magnitude-Frequency Distribution object. :param node: a node of kind incrementalMFD or truncGutenbergRichterMFD :returns: a :class:`openquake.hazardlib.mfd.EvenlyDiscretizedMFD.` or :class:`openq...
python
def convert_mfdist(self, node): """ Convert the given node into a Magnitude-Frequency Distribution object. :param node: a node of kind incrementalMFD or truncGutenbergRichterMFD :returns: a :class:`openquake.hazardlib.mfd.EvenlyDiscretizedMFD.` or :class:`openq...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceConverter.convert_npdist
def convert_npdist(self, node): """ Convert the given node into a Nodal Plane Distribution. :param node: a nodalPlaneDist node :returns: a :class:`openquake.hazardlib.geo.NodalPlane` instance """ with context(self.fname, node): npdist = [] for np ...
python
def convert_npdist(self, node): """ Convert the given node into a Nodal Plane Distribution. :param node: a nodalPlaneDist node :returns: a :class:`openquake.hazardlib.geo.NodalPlane` instance """ with context(self.fname, node): npdist = [] for np ...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceConverter.convert_hpdist
def convert_hpdist(self, node): """ Convert the given node into a probability mass function for the hypo depth distribution. :param node: a hypoDepthDist node :returns: a :class:`openquake.hazardlib.pmf.PMF` instance """ with context(self.fname, node): ...
python
def convert_hpdist(self, node): """ Convert the given node into a probability mass function for the hypo depth distribution. :param node: a hypoDepthDist node :returns: a :class:`openquake.hazardlib.pmf.PMF` instance """ with context(self.fname, node): ...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceConverter.convert_areaSource
def convert_areaSource(self, node): """ Convert the given node into an area source object. :param node: a node with tag areaGeometry :returns: a :class:`openquake.hazardlib.source.AreaSource` instance """ geom = node.areaGeometry coords = split_coords_2d(~geom.Po...
python
def convert_areaSource(self, node): """ Convert the given node into an area source object. :param node: a node with tag areaGeometry :returns: a :class:`openquake.hazardlib.source.AreaSource` instance """ geom = node.areaGeometry coords = split_coords_2d(~geom.Po...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceConverter.convert_pointSource
def convert_pointSource(self, node): """ Convert the given node into a point source object. :param node: a node with tag pointGeometry :returns: a :class:`openquake.hazardlib.source.PointSource` instance """ geom = node.pointGeometry lon_lat = ~geom.Point.pos ...
python
def convert_pointSource(self, node): """ Convert the given node into a point source object. :param node: a node with tag pointGeometry :returns: a :class:`openquake.hazardlib.source.PointSource` instance """ geom = node.pointGeometry lon_lat = ~geom.Point.pos ...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceConverter.convert_multiPointSource
def convert_multiPointSource(self, node): """ Convert the given node into a MultiPointSource object. :param node: a node with tag multiPointGeometry :returns: a :class:`openquake.hazardlib.source.MultiPointSource` """ geom = node.multiPointGeometry lons, lats = z...
python
def convert_multiPointSource(self, node): """ Convert the given node into a MultiPointSource object. :param node: a node with tag multiPointGeometry :returns: a :class:`openquake.hazardlib.source.MultiPointSource` """ geom = node.multiPointGeometry lons, lats = z...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceConverter.convert_simpleFaultSource
def convert_simpleFaultSource(self, node): """ Convert the given node into a simple fault object. :param node: a node with tag areaGeometry :returns: a :class:`openquake.hazardlib.source.SimpleFaultSource` instance """ geom = node.simpleFaultGeometry ...
python
def convert_simpleFaultSource(self, node): """ Convert the given node into a simple fault object. :param node: a node with tag areaGeometry :returns: a :class:`openquake.hazardlib.source.SimpleFaultSource` instance """ geom = node.simpleFaultGeometry ...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceConverter.convert_complexFaultSource
def convert_complexFaultSource(self, node): """ Convert the given node into a complex fault object. :param node: a node with tag areaGeometry :returns: a :class:`openquake.hazardlib.source.ComplexFaultSource` instance """ geom = node.complexFaultGeometr...
python
def convert_complexFaultSource(self, node): """ Convert the given node into a complex fault object. :param node: a node with tag areaGeometry :returns: a :class:`openquake.hazardlib.source.ComplexFaultSource` instance """ geom = node.complexFaultGeometr...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceConverter.convert_characteristicFaultSource
def convert_characteristicFaultSource(self, node): """ Convert the given node into a characteristic fault object. :param node: a node with tag areaGeometry :returns: a :class:`openquake.hazardlib.source.CharacteristicFaultSource` instance """ ...
python
def convert_characteristicFaultSource(self, node): """ Convert the given node into a characteristic fault object. :param node: a node with tag areaGeometry :returns: a :class:`openquake.hazardlib.source.CharacteristicFaultSource` instance """ ...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceConverter.convert_nonParametricSeismicSource
def convert_nonParametricSeismicSource(self, node): """ Convert the given node into a non parametric source object. :param node: a node with tag areaGeometry :returns: a :class:`openquake.hazardlib.source.NonParametricSeismicSource` instance "...
python
def convert_nonParametricSeismicSource(self, node): """ Convert the given node into a non parametric source object. :param node: a node with tag areaGeometry :returns: a :class:`openquake.hazardlib.source.NonParametricSeismicSource` instance "...
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gem/oq-engine
openquake/hazardlib/sourceconverter.py
SourceConverter.convert_sourceGroup
def convert_sourceGroup(self, node): """ Convert the given node into a SourceGroup object. :param node: a node with tag sourceGroup :returns: a :class:`SourceGroup` instance """ trt = node['tectonicRegion'] srcs_weights = node.attrib.get('...
python
def convert_sourceGroup(self, node): """ Convert the given node into a SourceGroup object. :param node: a node with tag sourceGroup :returns: a :class:`SourceGroup` instance """ trt = node['tectonicRegion'] srcs_weights = node.attrib.get('...
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gem/oq-engine
openquake/hmtk/faults/tectonic_regionalisation.py
_check_list_weights
def _check_list_weights(parameter, name): ''' Checks that the weights in a list of tuples sums to 1.0 ''' if not isinstance(parameter, list): raise ValueError('%s must be formatted with a list of tuples' % name) weight = np.sum([val[1] for val in parameter]) if fabs(weight - 1.) > 1E-8: ...
python
def _check_list_weights(parameter, name): ''' Checks that the weights in a list of tuples sums to 1.0 ''' if not isinstance(parameter, list): raise ValueError('%s must be formatted with a list of tuples' % name) weight = np.sum([val[1] for val in parameter]) if fabs(weight - 1.) > 1E-8: ...
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gem/oq-engine
openquake/hmtk/faults/tectonic_regionalisation.py
TectonicRegionalisation.populate_regions
def populate_regions(self, tectonic_region_dict): ''' Populates the tectonic region from the list of dictionaries, where each region is a dictionary of with the following format:: region = {'Shear_Modulus': [(val1, weight1), (val2, weight2), ...], 'Displacement_Lengt...
python
def populate_regions(self, tectonic_region_dict): ''' Populates the tectonic region from the list of dictionaries, where each region is a dictionary of with the following format:: region = {'Shear_Modulus': [(val1, weight1), (val2, weight2), ...], 'Displacement_Lengt...
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gem/oq-engine
openquake/hmtk/faults/active_fault_model.py
mtkActiveFaultModel.build_fault_model
def build_fault_model(self, collapse=False, rendered_msr=WC1994(), mfd_config=None): ''' Constructs a full fault model with epistemic uncertainty by enumerating all the possible recurrence models of each fault as separate faults, with the recurrence rates multip...
python
def build_fault_model(self, collapse=False, rendered_msr=WC1994(), mfd_config=None): ''' Constructs a full fault model with epistemic uncertainty by enumerating all the possible recurrence models of each fault as separate faults, with the recurrence rates multip...
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train
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
_read_date_from_string
def _read_date_from_string(str1): """ Reads the date from a string in the format YYYY/MM/DD and returns :class: datetime.date """ full_date = [int(x) for x in str1.split('/')] return datetime.date(full_date[0], full_date[1], full_date[2])
python
def _read_date_from_string(str1): """ Reads the date from a string in the format YYYY/MM/DD and returns :class: datetime.date """ full_date = [int(x) for x in str1.split('/')] return datetime.date(full_date[0], full_date[1], full_date[2])
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
_read_time_from_string
def _read_time_from_string(str1): """ Reads the time from a string in the format HH:MM:SS.S and returns :class: datetime.time """ full_time = [float(x) for x in str1.split(':')] hour = int(full_time[0]) minute = int(full_time[1]) if full_time[2] > 59.99: minute += 1 secon...
python
def _read_time_from_string(str1): """ Reads the time from a string in the format HH:MM:SS.S and returns :class: datetime.time """ full_time = [float(x) for x in str1.split(':')] hour = int(full_time[0]) minute = int(full_time[1]) if full_time[2] > 59.99: minute += 1 secon...
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
_read_moment_tensor_from_ndk_string
def _read_moment_tensor_from_ndk_string(ndk_string, system='USE'): """ Reads the moment tensor from the ndk_string representation ndk_string = [Mrr, sigMrr, Mtt, sigMtt, Mpp, sigMpp, Mrt, sigMrt, Mrp, sigMrp, Mtp, sigMtp] Output tensors should be of format: expected = [[Mtt, Mt...
python
def _read_moment_tensor_from_ndk_string(ndk_string, system='USE'): """ Reads the moment tensor from the ndk_string representation ndk_string = [Mrr, sigMrr, Mtt, sigMtt, Mpp, sigMpp, Mrt, sigMrt, Mrp, sigMrp, Mtp, sigMtp] Output tensors should be of format: expected = [[Mtt, Mt...
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
ParseNDKtoGCMT.read_file
def read_file(self, start_year=None, end_year=None, use_centroid=None): """ Reads the file """ raw_data = getlines(self.filename) num_lines = len(raw_data) if ((float(num_lines) / 5.) - float(num_lines / 5)) > 1E-9: raise IOError('GCMT represented by 5 lines -...
python
def read_file(self, start_year=None, end_year=None, use_centroid=None): """ Reads the file """ raw_data = getlines(self.filename) num_lines = len(raw_data) if ((float(num_lines) / 5.) - float(num_lines / 5)) > 1E-9: raise IOError('GCMT represented by 5 lines -...
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
ParseNDKtoGCMT.read_ndk_event
def read_ndk_event(self, raw_data, id0): """ Reads a 5-line batch of data into a set of GCMTs """ gcmt = GCMTEvent() # Get hypocentre ndkstring = raw_data[id0].rstrip('\n') gcmt.hypocentre = self._read_hypocentre_from_ndk_string(ndkstring) # GCMT metadata...
python
def read_ndk_event(self, raw_data, id0): """ Reads a 5-line batch of data into a set of GCMTs """ gcmt = GCMTEvent() # Get hypocentre ndkstring = raw_data[id0].rstrip('\n') gcmt.hypocentre = self._read_hypocentre_from_ndk_string(ndkstring) # GCMT metadata...
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
ParseNDKtoGCMT.to_hmtk
def to_hmtk(self, use_centroid=True): ''' Convert the content of the GCMT catalogue to a HMTK catalogue. ''' self._preallocate_data_dict() for iloc, gcmt in enumerate(self.catalogue.gcmts): self.catalogue.data['eventID'][iloc] = iloc if use_centro...
python
def to_hmtk(self, use_centroid=True): ''' Convert the content of the GCMT catalogue to a HMTK catalogue. ''' self._preallocate_data_dict() for iloc, gcmt in enumerate(self.catalogue.gcmts): self.catalogue.data['eventID'][iloc] = iloc if use_centro...
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train
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
ParseNDKtoGCMT._read_hypocentre_from_ndk_string
def _read_hypocentre_from_ndk_string(self, linestring): """ Reads the hypocentre data from the ndk string to return an instance of the GCMTHypocentre class """ hypo = GCMTHypocentre() hypo.source = linestring[0:4] hypo.date = _read_date_from_string(linestring[5:15...
python
def _read_hypocentre_from_ndk_string(self, linestring): """ Reads the hypocentre data from the ndk string to return an instance of the GCMTHypocentre class """ hypo = GCMTHypocentre() hypo.source = linestring[0:4] hypo.date = _read_date_from_string(linestring[5:15...
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
ParseNDKtoGCMT._get_metadata_from_ndk_string
def _get_metadata_from_ndk_string(self, gcmt, ndk_string): """ Reads the GCMT metadata from line 2 of the ndk batch """ gcmt.identifier = ndk_string[:16] inversion_data = re.split('[A-Z:]+', ndk_string[17:61]) gcmt.metadata['BODY'] = [float(x) for x in inversion_data[1].s...
python
def _get_metadata_from_ndk_string(self, gcmt, ndk_string): """ Reads the GCMT metadata from line 2 of the ndk batch """ gcmt.identifier = ndk_string[:16] inversion_data = re.split('[A-Z:]+', ndk_string[17:61]) gcmt.metadata['BODY'] = [float(x) for x in inversion_data[1].s...
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
ParseNDKtoGCMT._read_centroid_from_ndk_string
def _read_centroid_from_ndk_string(self, ndk_string, hypocentre): """ Reads the centroid data from the ndk string to return an instance of the GCMTCentroid class :param str ndk_string: String of data (line 3 of ndk format) :param hypocentre: Instance of th...
python
def _read_centroid_from_ndk_string(self, ndk_string, hypocentre): """ Reads the centroid data from the ndk string to return an instance of the GCMTCentroid class :param str ndk_string: String of data (line 3 of ndk format) :param hypocentre: Instance of th...
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Reads the centroid data from the ndk string to return an instance of the GCMTCentroid class :param str ndk_string: String of data (line 3 of ndk format) :param hypocentre: Instance of the GCMTHypocentre class
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
ParseNDKtoGCMT._get_moment_tensor_from_ndk_string
def _get_moment_tensor_from_ndk_string(self, ndk_string): """ Reads the moment tensor from the ndk_string and returns an instance of the GCMTMomentTensor class. By default the ndk format uses the Up, South, East (USE) reference system. """ moment_tensor = GCMTMome...
python
def _get_moment_tensor_from_ndk_string(self, ndk_string): """ Reads the moment tensor from the ndk_string and returns an instance of the GCMTMomentTensor class. By default the ndk format uses the Up, South, East (USE) reference system. """ moment_tensor = GCMTMome...
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Reads the moment tensor from the ndk_string and returns an instance of the GCMTMomentTensor class. By default the ndk format uses the Up, South, East (USE) reference system.
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train
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
ParseNDKtoGCMT._get_principal_axes_from_ndk_string
def _get_principal_axes_from_ndk_string(self, ndk_string, exponent): """ Gets the principal axes from the ndk string and returns an instance of the GCMTPrincipalAxes class """ axes = GCMTPrincipalAxes() # The principal axes is defined in characters 3:48 of the 5th line ...
python
def _get_principal_axes_from_ndk_string(self, ndk_string, exponent): """ Gets the principal axes from the ndk string and returns an instance of the GCMTPrincipalAxes class """ axes = GCMTPrincipalAxes() # The principal axes is defined in characters 3:48 of the 5th line ...
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
ParseNDKtoGCMT._get_nodal_planes_from_ndk_string
def _get_nodal_planes_from_ndk_string(self, ndk_string): """ Reads the nodal plane information (represented by 5th line [57:] of the tensor representation) and returns an instance of the GCMTNodalPlanes class """ planes = GCMTNodalPlanes() planes.nodal_plane_1 = {...
python
def _get_nodal_planes_from_ndk_string(self, ndk_string): """ Reads the nodal plane information (represented by 5th line [57:] of the tensor representation) and returns an instance of the GCMTNodalPlanes class """ planes = GCMTNodalPlanes() planes.nodal_plane_1 = {...
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gem/oq-engine
openquake/hmtk/parsers/catalogue/gcmt_ndk_parser.py
ParseNDKtoGCMT._get_moment_from_ndk_string
def _get_moment_from_ndk_string(self, ndk_string, exponent): """ Returns the moment and the moment magnitude """ moment = float(ndk_string[49:56]) * (10. ** exponent) version = ndk_string[:3] magnitude = utils.moment_magnitude_scalar(moment) return moment, version...
python
def _get_moment_from_ndk_string(self, ndk_string, exponent): """ Returns the moment and the moment magnitude """ moment = float(ndk_string[49:56]) * (10. ** exponent) version = ndk_string[:3] magnitude = utils.moment_magnitude_scalar(moment) return moment, version...
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gem/oq-engine
openquake/hmtk/sources/source_model.py
mtkSourceModel.serialise_to_nrml
def serialise_to_nrml(self, filename, use_defaults=False): ''' Writes the source model to a nrml source model file given by the filename :param str filename: Path to output file :param bool use_defaults: Boolean to indicate whether to use default values ...
python
def serialise_to_nrml(self, filename, use_defaults=False): ''' Writes the source model to a nrml source model file given by the filename :param str filename: Path to output file :param bool use_defaults: Boolean to indicate whether to use default values ...
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gem/oq-engine
openquake/hmtk/sources/source_model.py
mtkSourceModel.convert_to_oqhazardlib
def convert_to_oqhazardlib( self, tom, simple_mesh_spacing=1.0, complex_mesh_spacing=2.0, area_discretisation=10.0, use_defaults=False): """ Converts the source model to an iterator of sources of :class: openquake.hazardlib.source.base.BaseSeismicSource ...
python
def convert_to_oqhazardlib( self, tom, simple_mesh_spacing=1.0, complex_mesh_spacing=2.0, area_discretisation=10.0, use_defaults=False): """ Converts the source model to an iterator of sources of :class: openquake.hazardlib.source.base.BaseSeismicSource ...
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gem/oq-engine
openquake/hmtk/seismicity/occurrence/utils.py
recurrence_table
def recurrence_table(mag, dmag, year, time_interval=None): """ Table of recurrence statistics for each magnitude [Magnitude, Number of Observations, Cumulative Number of Observations >= M, Number of Observations (normalised to annual value), Cumulative Number of Observations (normalised to annua...
python
def recurrence_table(mag, dmag, year, time_interval=None): """ Table of recurrence statistics for each magnitude [Magnitude, Number of Observations, Cumulative Number of Observations >= M, Number of Observations (normalised to annual value), Cumulative Number of Observations (normalised to annua...
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train
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gem/oq-engine
openquake/hmtk/seismicity/occurrence/utils.py
input_checks
def input_checks(catalogue, config, completeness): """ Performs a basic set of input checks on the data """ if isinstance(completeness, np.ndarray): # completeness table is a numpy array (i.e. [year, magnitude]) if np.shape(completeness)[1] != 2: raise ValueError('Completeness T...
python
def input_checks(catalogue, config, completeness): """ Performs a basic set of input checks on the data """ if isinstance(completeness, np.ndarray): # completeness table is a numpy array (i.e. [year, magnitude]) if np.shape(completeness)[1] != 2: raise ValueError('Completeness T...
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gem/oq-engine
openquake/hmtk/seismicity/occurrence/utils.py
generate_trunc_gr_magnitudes
def generate_trunc_gr_magnitudes(bval, mmin, mmax, nsamples): ''' Generate a random list of magnitudes distributed according to a truncated Gutenberg-Richter model :param float bval: b-value :param float mmin: Minimum Magnitude :param float mmax: Maximum Magnitude :p...
python
def generate_trunc_gr_magnitudes(bval, mmin, mmax, nsamples): ''' Generate a random list of magnitudes distributed according to a truncated Gutenberg-Richter model :param float bval: b-value :param float mmin: Minimum Magnitude :param float mmax: Maximum Magnitude :p...
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gem/oq-engine
openquake/hmtk/seismicity/occurrence/utils.py
generate_synthetic_magnitudes
def generate_synthetic_magnitudes(aval, bval, mmin, mmax, nyears): ''' Generates a synthetic catalogue for a specified number of years, with magnitudes distributed according to a truncated Gutenberg-Richter distribution :param float aval: a-value :param float bval: b-value :...
python
def generate_synthetic_magnitudes(aval, bval, mmin, mmax, nyears): ''' Generates a synthetic catalogue for a specified number of years, with magnitudes distributed according to a truncated Gutenberg-Richter distribution :param float aval: a-value :param float bval: b-value :...
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gem/oq-engine
openquake/hmtk/seismicity/occurrence/utils.py
downsample_completeness_table
def downsample_completeness_table(comp_table, sample_width=0.1, mmax=None): """ Re-sample the completeness table to a specified sample_width """ new_comp_table = [] for i in range(comp_table.shape[0] - 1): mvals = np.arange(comp_table[i, 1], comp_table[i + 1, 1], d_...
python
def downsample_completeness_table(comp_table, sample_width=0.1, mmax=None): """ Re-sample the completeness table to a specified sample_width """ new_comp_table = [] for i in range(comp_table.shape[0] - 1): mvals = np.arange(comp_table[i, 1], comp_table[i + 1, 1], d_...
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train
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gem/oq-engine
openquake/hmtk/seismicity/occurrence/utils.py
get_completeness_counts
def get_completeness_counts(catalogue, completeness, d_m): """ Returns the number of earthquakes in a set of magnitude bins of specified with, along with the corresponding completeness duration (in years) of the bin :param catalogue: Earthquake catalogue as instance of :class: openq...
python
def get_completeness_counts(catalogue, completeness, d_m): """ Returns the number of earthquakes in a set of magnitude bins of specified with, along with the corresponding completeness duration (in years) of the bin :param catalogue: Earthquake catalogue as instance of :class: openq...
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Returns the number of earthquakes in a set of magnitude bins of specified with, along with the corresponding completeness duration (in years) of the bin :param catalogue: Earthquake catalogue as instance of :class: openquake.hmtk.seisimicity.catalogue.Catalogue :param numpy.ndarray comp...
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train
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gem/oq-engine
openquake/commands/reset.py
reset
def reset(yes): """ Remove all the datastores and the database of the current user """ ok = yes or confirm('Do you really want to destroy all your data? (y/n) ') if not ok: return dbpath = os.path.realpath(os.path.expanduser(config.dbserver.file)) # user must be able to access and ...
python
def reset(yes): """ Remove all the datastores and the database of the current user """ ok = yes or confirm('Do you really want to destroy all your data? (y/n) ') if not ok: return dbpath = os.path.realpath(os.path.expanduser(config.dbserver.file)) # user must be able to access and ...
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gem/oq-engine
openquake/hazardlib/gsim/drouet_alpes_2015.py
DrouetAlpes2015Rjb._compute_mean
def _compute_mean(self, C, mag, r): """ Compute mean value according to equation 30, page 1021. """ mean = (C['c1'] + self._compute_term1(C, mag) + self._compute_term2(C, mag, r)) return mean
python
def _compute_mean(self, C, mag, r): """ Compute mean value according to equation 30, page 1021. """ mean = (C['c1'] + self._compute_term1(C, mag) + self._compute_term2(C, mag, r)) return mean
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Compute mean value according to equation 30, page 1021.
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gem/oq-engine
openquake/hazardlib/gsim/drouet_alpes_2015.py
DrouetAlpes2015Rjb._compute_term2
def _compute_term2(self, C, mag, r): """ This computes the term f2 equation 8 Drouet & Cotton (2015) """ return (C['c4'] + C['c5'] * mag) * \ np.log(np.sqrt(r**2 + C['c6']**2)) + C['c7'] * r
python
def _compute_term2(self, C, mag, r): """ This computes the term f2 equation 8 Drouet & Cotton (2015) """ return (C['c4'] + C['c5'] * mag) * \ np.log(np.sqrt(r**2 + C['c6']**2)) + C['c7'] * r
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gem/oq-engine
openquake/hazardlib/gsim/drouet_alpes_2015.py
DrouetAlpes2015Rrup.get_mean_and_stddevs
def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types): """ See :meth:`superclass method <.base.GroundShakingIntensityModel.get_mean_and_stddevs>` for spec of input and result values. """ assert all(stddev_type in self.DEFINED_FOR_STANDARD_DEVIATION_TYPES ...
python
def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types): """ See :meth:`superclass method <.base.GroundShakingIntensityModel.get_mean_and_stddevs>` for spec of input and result values. """ assert all(stddev_type in self.DEFINED_FOR_STANDARD_DEVIATION_TYPES ...
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gem/oq-engine
openquake/server/db/actions.py
set_status
def set_status(db, job_id, status): """ Set the status 'created', 'executing', 'complete', 'failed', 'aborted' consistently with `is_running`. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: ID of the current job :param status: status string """ assert status in ...
python
def set_status(db, job_id, status): """ Set the status 'created', 'executing', 'complete', 'failed', 'aborted' consistently with `is_running`. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: ID of the current job :param status: status string """ assert status in ...
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gem/oq-engine
openquake/server/db/actions.py
create_job
def create_job(db, datadir): """ Create job for the given user, return it. :param db: a :class:`openquake.server.dbapi.Db` instance :param datadir: Data directory of the user who owns/started this job. :returns: the job ID """ calc_id = get_calc_id(db, datadir) + 1 ...
python
def create_job(db, datadir): """ Create job for the given user, return it. :param db: a :class:`openquake.server.dbapi.Db` instance :param datadir: Data directory of the user who owns/started this job. :returns: the job ID """ calc_id = get_calc_id(db, datadir) + 1 ...
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gem/oq-engine
openquake/server/db/actions.py
import_job
def import_job(db, calc_id, calc_mode, description, user_name, status, hc_id, datadir): """ Insert a calculation inside the database, if calc_id is not taken """ job = dict(id=calc_id, calculation_mode=calc_mode, description=description, user_n...
python
def import_job(db, calc_id, calc_mode, description, user_name, status, hc_id, datadir): """ Insert a calculation inside the database, if calc_id is not taken """ job = dict(id=calc_id, calculation_mode=calc_mode, description=description, user_n...
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gem/oq-engine
openquake/server/db/actions.py
get_job
def get_job(db, job_id, username=None): """ If job_id is negative, return the last calculation of the current user, otherwise returns the job_id unchanged. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID (can be negative and can be nonexisting) :param username: ...
python
def get_job(db, job_id, username=None): """ If job_id is negative, return the last calculation of the current user, otherwise returns the job_id unchanged. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID (can be negative and can be nonexisting) :param username: ...
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gem/oq-engine
openquake/server/db/actions.py
get_calc_id
def get_calc_id(db, datadir, job_id=None): """ Return the latest calc_id by looking both at the datastore and the database. :param db: a :class:`openquake.server.dbapi.Db` instance :param datadir: the directory containing the datastores :param job_id: a job ID; if None, returns the latest job I...
python
def get_calc_id(db, datadir, job_id=None): """ Return the latest calc_id by looking both at the datastore and the database. :param db: a :class:`openquake.server.dbapi.Db` instance :param datadir: the directory containing the datastores :param job_id: a job ID; if None, returns the latest job I...
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gem/oq-engine
openquake/server/db/actions.py
list_calculations
def list_calculations(db, job_type, user_name): """ Yield a summary of past calculations. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_type: 'hazard' or 'risk' :param user_name: an user name """ jobs = db('SELECT *, %s FROM job WHERE user_name=?x ' 'AND ...
python
def list_calculations(db, job_type, user_name): """ Yield a summary of past calculations. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_type: 'hazard' or 'risk' :param user_name: an user name """ jobs = db('SELECT *, %s FROM job WHERE user_name=?x ' 'AND ...
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gem/oq-engine
openquake/server/db/actions.py
list_outputs
def list_outputs(db, job_id, full=True): """ List the outputs for a given :class:`~openquake.server.db.models.OqJob`. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: ID of a calculation. :param bool full: If True produce a full listing, otherwise ...
python
def list_outputs(db, job_id, full=True): """ List the outputs for a given :class:`~openquake.server.db.models.OqJob`. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: ID of a calculation. :param bool full: If True produce a full listing, otherwise ...
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gem/oq-engine
openquake/server/db/actions.py
create_outputs
def create_outputs(db, job_id, keysize, ds_size): """ Build a correspondence between the outputs in the datastore and the ones in the database. Also, update the datastore size in the job table. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: ID of the current job :param ...
python
def create_outputs(db, job_id, keysize, ds_size): """ Build a correspondence between the outputs in the datastore and the ones in the database. Also, update the datastore size in the job table. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: ID of the current job :param ...
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gem/oq-engine
openquake/server/db/actions.py
finish
def finish(db, job_id, status): """ Set the job columns `is_running`, `status`, and `stop_time`. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: ID of the current job :param status: a string such as 'successful' or 'failed' """ db('UPDATE job ...
python
def finish(db, job_id, status): """ Set the job columns `is_running`, `status`, and `stop_time`. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: ID of the current job :param status: a string such as 'successful' or 'failed' """ db('UPDATE job ...
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Set the job columns `is_running`, `status`, and `stop_time`. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: ID of the current job :param status: a string such as 'successful' or 'failed'
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/server/db/actions.py#L315-L328
gem/oq-engine
openquake/server/db/actions.py
del_calc
def del_calc(db, job_id, user): """ Delete a calculation and all associated outputs, if possible. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: job ID, can be an integer or a string :param user: username :returns: None if everything went fine or an error message ""...
python
def del_calc(db, job_id, user): """ Delete a calculation and all associated outputs, if possible. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: job ID, can be an integer or a string :param user: username :returns: None if everything went fine or an error message ""...
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Delete a calculation and all associated outputs, if possible. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: job ID, can be an integer or a string :param user: username :returns: None if everything went fine or an error message
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/server/db/actions.py#L331-L367
gem/oq-engine
openquake/server/db/actions.py
log
def log(db, job_id, timestamp, level, process, message): """ Write a log record in the database. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID :param timestamp: timestamp to store in the log record :param level: logging level to...
python
def log(db, job_id, timestamp, level, process, message): """ Write a log record in the database. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID :param timestamp: timestamp to store in the log record :param level: logging level to...
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/server/db/actions.py#L370-L388
gem/oq-engine
openquake/server/db/actions.py
get_log
def get_log(db, job_id): """ Extract the logs as a big string :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID """ logs = db('SELECT * FROM log WHERE job_id=?x ORDER BY id', job_id) out = [] for log in logs: time = str(log.timestamp)[:-4] # strip...
python
def get_log(db, job_id): """ Extract the logs as a big string :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID """ logs = db('SELECT * FROM log WHERE job_id=?x ORDER BY id', job_id) out = [] for log in logs: time = str(log.timestamp)[:-4] # strip...
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Extract the logs as a big string :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/server/db/actions.py#L391-L403
gem/oq-engine
openquake/server/db/actions.py
get_output
def get_output(db, output_id): """ :param db: a :class:`openquake.server.dbapi.Db` instance :param output_id: ID of an Output object :returns: (ds_key, calc_id, dirname) """ out = db('SELECT output.*, ds_calc_dir FROM output, job ' 'WHERE oq_job_id=job.id AND output.id=?x', output_i...
python
def get_output(db, output_id): """ :param db: a :class:`openquake.server.dbapi.Db` instance :param output_id: ID of an Output object :returns: (ds_key, calc_id, dirname) """ out = db('SELECT output.*, ds_calc_dir FROM output, job ' 'WHERE oq_job_id=job.id AND output.id=?x', output_i...
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:param db: a :class:`openquake.server.dbapi.Db` instance :param output_id: ID of an Output object :returns: (ds_key, calc_id, dirname)
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/server/db/actions.py#L406-L414
gem/oq-engine
openquake/server/db/actions.py
save_performance
def save_performance(db, job_id, records): """ Save in the database the performance information about the given job. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID :param records: a list of performance records """ # NB: rec['counts'] is a numpy.uint64 which...
python
def save_performance(db, job_id, records): """ Save in the database the performance information about the given job. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID :param records: a list of performance records """ # NB: rec['counts'] is a numpy.uint64 which...
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/server/db/actions.py#L417-L430
gem/oq-engine
openquake/server/db/actions.py
calc_info
def calc_info(db, calc_id): """ :param db: a :class:`openquake.server.dbapi.Db` instance :param calc_id: calculation ID :returns: dictionary of info about the given calculation """ job = db('SELECT * FROM job WHERE id=?x', calc_id, one=True) response_data = {} response_data['user_name'] ...
python
def calc_info(db, calc_id): """ :param db: a :class:`openquake.server.dbapi.Db` instance :param calc_id: calculation ID :returns: dictionary of info about the given calculation """ job = db('SELECT * FROM job WHERE id=?x', calc_id, one=True) response_data = {} response_data['user_name'] ...
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:param db: a :class:`openquake.server.dbapi.Db` instance :param calc_id: calculation ID :returns: dictionary of info about the given calculation
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https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/server/db/actions.py#L492-L505
gem/oq-engine
openquake/server/db/actions.py
get_calcs
def get_calcs(db, request_get_dict, allowed_users, user_acl_on=False, id=None): """ :param db: a :class:`openquake.server.dbapi.Db` instance :param request_get_dict: a dictionary :param allowed_users: a list of users :param user_acl_on: if True, returns only the calcu...
python
def get_calcs(db, request_get_dict, allowed_users, user_acl_on=False, id=None): """ :param db: a :class:`openquake.server.dbapi.Db` instance :param request_get_dict: a dictionary :param allowed_users: a list of users :param user_acl_on: if True, returns only the calcu...
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/server/db/actions.py#L508-L563
gem/oq-engine
openquake/server/db/actions.py
get_log_slice
def get_log_slice(db, job_id, start, stop): """ Get a slice of the calculation log as a JSON list of rows :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID :param start: start of the slice :param stop: end of the slice (the last ele...
python
def get_log_slice(db, job_id, start, stop): """ Get a slice of the calculation log as a JSON list of rows :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID :param start: start of the slice :param stop: end of the slice (the last ele...
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Get a slice of the calculation log as a JSON list of rows :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID :param start: start of the slice :param stop: end of the slice (the last element is excluded)
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/server/db/actions.py#L588-L610
gem/oq-engine
openquake/server/db/actions.py
get_traceback
def get_traceback(db, job_id): """ Return the traceback of the given calculation as a list of lines. The list is empty if the calculation was successful. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID """ # strange: understand why the filter...
python
def get_traceback(db, job_id): """ Return the traceback of the given calculation as a list of lines. The list is empty if the calculation was successful. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID """ # strange: understand why the filter...
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Return the traceback of the given calculation as a list of lines. The list is empty if the calculation was successful. :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/server/db/actions.py#L626-L642
gem/oq-engine
openquake/server/db/actions.py
get_result
def get_result(db, result_id): """ :param db: a :class:`openquake.server.dbapi.Db` instance :param result_id: a result ID :returns: (job_id, job_status, datadir, datastore_key) """ job = db('SELECT job.*, ds_key FROM job, output WHERE ' 'oq_job_id=job.id AND output.i...
python
def get_result(db, result_id): """ :param db: a :class:`openquake.server.dbapi.Db` instance :param result_id: a result ID :returns: (job_id, job_status, datadir, datastore_key) """ job = db('SELECT job.*, ds_key FROM job, output WHERE ' 'oq_job_id=job.id AND output.i...
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:param db: a :class:`openquake.server.dbapi.Db` instance :param result_id: a result ID :returns: (job_id, job_status, datadir, datastore_key)
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/server/db/actions.py#L645-L656
gem/oq-engine
openquake/server/db/actions.py
get_results
def get_results(db, job_id): """ :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID :returns: (datadir, datastore_keys) """ ds_calc_dir = db('SELECT ds_calc_dir FROM job WHERE id=?x', job_id, scalar=True) datadir = os.path.di...
python
def get_results(db, job_id): """ :param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID :returns: (datadir, datastore_keys) """ ds_calc_dir = db('SELECT ds_calc_dir FROM job WHERE id=?x', job_id, scalar=True) datadir = os.path.di...
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:param db: a :class:`openquake.server.dbapi.Db` instance :param job_id: a job ID :returns: (datadir, datastore_keys)
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train
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/server/db/actions.py#L659-L670