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ultrabug/uhashring | uhashring/ring.py | HashRing.range | def range(self, key, size=None, unique=True):
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:param key: the key to look for.
:param size: limit the list to at most this number of nodes.
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ultrabug/uhashring | uhashring/monkey.py | patch_memcache | def patch_memcache():
"""Monkey patch python-memcached to implement our consistent hashring
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"""
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... | python | def patch_memcache():
"""Monkey patch python-memcached to implement our consistent hashring
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ultrabug/uhashring | uhashring/ring_meta.py | MetaRing._create_ring | def _create_ring(self, nodes):
"""Generate a ketama compatible continuum/ring.
"""
for node_name, node_conf in nodes:
for w in range(0, node_conf['vnodes'] * node_conf['weight']):
self._distribution[node_name] += 1
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"""Generate a ketama compatible continuum/ring.
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for node_name, node_conf in nodes:
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ultrabug/uhashring | uhashring/ring_meta.py | MetaRing._remove_node | def _remove_node(self, node_name):
"""Remove the given node from the continuum/ring.
:param node_name: the node name.
"""
try:
node_conf = self._nodes.pop(node_name)
except Exception:
raise KeyError('node \'{}\' not found, available nodes: {}'.format(
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"""Remove the given node from the continuum/ring.
:param node_name: the node name.
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try:
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ultrabug/uhashring | uhashring/ring_ketama.py | KetamaRing.hashi | def hashi(self, key, replica=0):
"""Returns a ketama compatible hash from the given key.
"""
dh = self._listbytes(md5(str(key).encode('utf-8')).digest())
rd = replica * 4
return (
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"""Returns a ketama compatible hash from the given key.
"""
dh = self._listbytes(md5(str(key).encode('utf-8')).digest())
rd = replica * 4
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ultrabug/uhashring | uhashring/ring_ketama.py | KetamaRing._hashi_weight_generator | def _hashi_weight_generator(self, node_name, node_conf):
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ultrabug/uhashring | uhashring/ring_ketama.py | KetamaRing._create_ring | def _create_ring(self, nodes):
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ultrabug/uhashring | uhashring/ring_ketama.py | KetamaRing._remove_node | def _remove_node(self, node_name):
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gatagat/lap | setup.py | get_numpy_status | def get_numpy_status():
"""
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"""
numpy_status = {}
try:
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"""
Returns a dictionary containing a boolean specifying whether NumPy
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gatagat/lap | lap/lapmod.py | lapmod | def lapmod(n, cc, ii, kk, fast=True, return_cost=True,
fp_version=FP_DYNAMIC):
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n: number of rows of the assignment cost matrix
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simonvh/genomepy | genomepy/provider.py | ProviderBase.register_provider | def register_provider(cls, provider):
"""Register method to keep list of providers."""
def decorator(subclass):
"""Register as decorator function."""
cls._providers[provider] = subclass
subclass.name = provider
return subclass
return decorator | python | def register_provider(cls, provider):
"""Register method to keep list of providers."""
def decorator(subclass):
"""Register as decorator function."""
cls._providers[provider] = subclass
subclass.name = provider
return subclass
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simonvh/genomepy | genomepy/provider.py | ProviderBase.tar_to_bigfile | def tar_to_bigfile(self, fname, outfile):
"""Convert tar of multiple FASTAs to one file."""
fnames = []
tmpdir = mkdtemp()
# Extract files to temporary directory
with tarfile.open(fname) as tar:
tar.extractall(path=tmpdir)
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"""Convert tar of multiple FASTAs to one file."""
fnames = []
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# Extract files to temporary directory
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simonvh/genomepy | genomepy/provider.py | ProviderBase.download_genome | def download_genome(self, name, genome_dir, localname=None, mask="soft", regex=None, invert_match=False, version=None):
"""
Download a (gzipped) genome file to a specific directory
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----------
name : str
Genome / species name
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Download a (gzipped) genome file to a specific directory
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name : str
Genome / species name
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simonvh/genomepy | genomepy/plugin.py | find_plugins | def find_plugins():
"""Locate and initialize all available plugins.
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plugin_dir = os.path.dirname(os.path.realpath(__file__))
plugin_dir = os.path.join(plugin_dir, "plugins")
plugin_files = [x[:-3] for x in os.listdir(plugin_dir) if x.endswith(".py")]
sys.path.insert(0, plugin_dir)
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"""Locate and initialize all available plugins.
"""
plugin_dir = os.path.dirname(os.path.realpath(__file__))
plugin_dir = os.path.join(plugin_dir, "plugins")
plugin_files = [x[:-3] for x in os.listdir(plugin_dir) if x.endswith(".py")]
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simonvh/genomepy | genomepy/plugin.py | convert | def convert(name):
"""Convert CamelCase to underscore
Parameters
----------
name : str
Camelcase string
Returns
-------
name : str
Converted name
"""
s1 = re.sub('(.)([A-Z][a-z]+)', r'\1_\2', name)
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"""Convert CamelCase to underscore
Parameters
----------
name : str
Camelcase string
Returns
-------
name : str
Converted name
"""
s1 = re.sub('(.)([A-Z][a-z]+)', r'\1_\2', name)
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simonvh/genomepy | genomepy/plugin.py | init_plugins | def init_plugins():
"""Return dictionary of available plugins
Returns
-------
plugins : dictionary
key is plugin name, value Plugin object
"""
find_plugins()
d = {}
for c in Plugin.__subclasses__():
ins = c()
if ins.name() in config.get("plugin", []):
... | python | def init_plugins():
"""Return dictionary of available plugins
Returns
-------
plugins : dictionary
key is plugin name, value Plugin object
"""
find_plugins()
d = {}
for c in Plugin.__subclasses__():
ins = c()
if ins.name() in config.get("plugin", []):
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simonvh/genomepy | genomepy/plugin.py | activate | def activate(name):
"""Activate plugin.
Parameters
----------
name : str
Plugin name.
"""
if name in plugins:
plugins[name].activate()
else:
raise Exception("plugin {} not found".format(name)) | python | def activate(name):
"""Activate plugin.
Parameters
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name : str
Plugin name.
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simonvh/genomepy | genomepy/plugin.py | deactivate | def deactivate(name):
"""Deactivate plugin.
Parameters
----------
name : str
Plugin name.
"""
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Parameters
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name : str
Plugin name.
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simonvh/genomepy | genomepy/functions.py | manage_config | def manage_config(cmd, *args):
"""Manage genomepy config file."""
if cmd == "file":
print(config.config_file)
elif cmd == "show":
with open(config.config_file) as f:
print(f.read())
elif cmd == "generate":
fname = os.path.join(
user_config_dir("genomep... | python | def manage_config(cmd, *args):
"""Manage genomepy config file."""
if cmd == "file":
print(config.config_file)
elif cmd == "show":
with open(config.config_file) as f:
print(f.read())
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fname = os.path.join(
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simonvh/genomepy | genomepy/functions.py | list_available_genomes | def list_available_genomes(provider=None):
"""
List all available genomes.
Parameters
----------
provider : str, optional
List genomes from specific provider. Genomes from all
providers will be returned if not specified.
Returns
-------
list with genome names
"""
... | python | def list_available_genomes(provider=None):
"""
List all available genomes.
Parameters
----------
provider : str, optional
List genomes from specific provider. Genomes from all
providers will be returned if not specified.
Returns
-------
list with genome names
"""
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simonvh/genomepy | genomepy/functions.py | list_installed_genomes | def list_installed_genomes(genome_dir=None):
"""
List all available genomes.
Parameters
----------
genome_dir : str
Directory with installed genomes.
Returns
-------
list with genome names
"""
if not genome_dir:
genome_dir = config.get("genome_dir", None)
if... | python | def list_installed_genomes(genome_dir=None):
"""
List all available genomes.
Parameters
----------
genome_dir : str
Directory with installed genomes.
Returns
-------
list with genome names
"""
if not genome_dir:
genome_dir = config.get("genome_dir", None)
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simonvh/genomepy | genomepy/functions.py | search | def search(term, provider=None):
"""
Search for a genome.
If provider is specified, search only that specific provider, else
search all providers. Both the name and description are used for the
search. Seacrch term is case-insensitive.
Parameters
----------
term : str
Sear... | python | def search(term, provider=None):
"""
Search for a genome.
If provider is specified, search only that specific provider, else
search all providers. Both the name and description are used for the
search. Seacrch term is case-insensitive.
Parameters
----------
term : str
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simonvh/genomepy | genomepy/functions.py | install_genome | def install_genome(name, provider, version=None, genome_dir=None, localname=None, mask="soft", regex=None, invert_match=False, annotation=False):
"""
Install a genome.
Parameters
----------
name : str
Genome name
provider : str
Provider name
version : str
Version (... | python | def install_genome(name, provider, version=None, genome_dir=None, localname=None, mask="soft", regex=None, invert_match=False, annotation=False):
"""
Install a genome.
Parameters
----------
name : str
Genome name
provider : str
Provider name
version : str
Version (... | [
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simonvh/genomepy | genomepy/functions.py | _weighted_selection | def _weighted_selection(l, n):
"""
Selects n random elements from a list of (weight, item) tuples.
Based on code snippet by Nick Johnson
"""
cuml = []
items = []
total_weight = 0.0
for weight, item in l:
total_weight += weight
cuml.append(total_weight)
it... | python | def _weighted_selection(l, n):
"""
Selects n random elements from a list of (weight, item) tuples.
Based on code snippet by Nick Johnson
"""
cuml = []
items = []
total_weight = 0.0
for weight, item in l:
total_weight += weight
cuml.append(total_weight)
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simonvh/genomepy | genomepy/functions.py | generate_exports | def generate_exports():
"""Print export commands for setting environment variables.
"""
env = []
for name in list_installed_genomes():
try:
g = Genome(name)
env_name = re.sub(r'[^\w]+', "_", name).upper()
env.append("export {}={}".format(env_name, g.filename))
except:
p... | python | def generate_exports():
"""Print export commands for setting environment variables.
"""
env = []
for name in list_installed_genomes():
try:
g = Genome(name)
env_name = re.sub(r'[^\w]+', "_", name).upper()
env.append("export {}={}".format(env_name, g.filename))
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simonvh/genomepy | genomepy/functions.py | generate_env | def generate_env(fname=None):
"""Generate file with exports.
By default this is in .config/genomepy/exports.txt.
Parameters
----------
fname: strs, optional
Name of the output file.
"""
config_dir = user_config_dir("genomepy")
if os.path.exists(config_dir):
fname = os.... | python | def generate_env(fname=None):
"""Generate file with exports.
By default this is in .config/genomepy/exports.txt.
Parameters
----------
fname: strs, optional
Name of the output file.
"""
config_dir = user_config_dir("genomepy")
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simonvh/genomepy | genomepy/functions.py | manage_plugins | def manage_plugins(command, plugin_names=None):
"""Enable or disable plugins.
"""
if plugin_names is None:
plugin_names = []
active_plugins = config.get("plugin", [])
plugins = init_plugins()
if command == "enable":
for name in plugin_names:
if name not in plugins:
... | python | def manage_plugins(command, plugin_names=None):
"""Enable or disable plugins.
"""
if plugin_names is None:
plugin_names = []
active_plugins = config.get("plugin", [])
plugins = init_plugins()
if command == "enable":
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simonvh/genomepy | genomepy/functions.py | Genome.gap_sizes | def gap_sizes(self):
"""Return gap sizes per chromosome.
Returns
-------
gap_sizes : dict
a dictionary with chromosomes as key and the total number of
Ns as values
"""
if not self._gap_sizes:
gap_file = self.props["gaps"]["gap... | python | def gap_sizes(self):
"""Return gap sizes per chromosome.
Returns
-------
gap_sizes : dict
a dictionary with chromosomes as key and the total number of
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"""
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simonvh/genomepy | genomepy/functions.py | Genome.get_random_sequences | def get_random_sequences(self, n=10, length=200, chroms=None, max_n=0.1):
"""Return random genomic sequences.
Parameters
----------
n : int , optional
Number of sequences to return.
length : int , optional
Length of sequences to return.
chroms :... | python | def get_random_sequences(self, n=10, length=200, chroms=None, max_n=0.1):
"""Return random genomic sequences.
Parameters
----------
n : int , optional
Number of sequences to return.
length : int , optional
Length of sequences to return.
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Return sequences only from these chromosomes.
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simonvh/genomepy | genomepy/cli.py | search | def search(term, provider=None):
"""Search for genomes that contain TERM in their name or description."""
for row in genomepy.search(term, provider):
print("\t".join([x.decode('utf-8', 'ignore') for x in row])) | python | def search(term, provider=None):
"""Search for genomes that contain TERM in their name or description."""
for row in genomepy.search(term, provider):
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simonvh/genomepy | genomepy/cli.py | install | def install(name, provider, genome_dir, localname, mask, regex, match, annotation):
"""Install genome NAME from provider PROVIDER in directory GENOME_DIR."""
genomepy.install_genome(
name, provider, genome_dir=genome_dir, localname=localname, mask=mask,
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"""Install genome NAME from provider PROVIDER in directory GENOME_DIR."""
genomepy.install_genome(
name, provider, genome_dir=genome_dir, localname=localname, mask=mask,
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simonvh/genomepy | genomepy/utils.py | generate_gap_bed | def generate_gap_bed(fname, outname):
""" Generate a BED file with gap locations.
Parameters
----------
fname : str
Filename of input FASTA file.
outname : str
Filename of output BED file.
"""
f = Fasta(fname)
with open(outname, "w") as bed:
for chrom in f.keys... | python | def generate_gap_bed(fname, outname):
""" Generate a BED file with gap locations.
Parameters
----------
fname : str
Filename of input FASTA file.
outname : str
Filename of output BED file.
"""
f = Fasta(fname)
with open(outname, "w") as bed:
for chrom in f.keys... | [
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simonvh/genomepy | genomepy/utils.py | generate_sizes | def generate_sizes(name, genome_dir):
"""Generate a sizes file with length of sequences in FASTA file."""
fa = os.path.join(genome_dir, name, "{}.fa".format(name))
sizes = fa + ".sizes"
g = Fasta(fa)
with open(sizes, "w") as f:
for seqname in g.keys():
f.write("{}\t{}\n".format(s... | python | def generate_sizes(name, genome_dir):
"""Generate a sizes file with length of sequences in FASTA file."""
fa = os.path.join(genome_dir, name, "{}.fa".format(name))
sizes = fa + ".sizes"
g = Fasta(fa)
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simonvh/genomepy | genomepy/utils.py | filter_fasta | def filter_fasta(infa, outfa, regex=".*", v=False, force=False):
"""Filter fasta file based on regex.
Parameters
----------
infa : str
Filename of input fasta file.
outfa : str
Filename of output fasta file. Cannot be the same as infa.
regex : str, optional
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infa : str
Filename of input fasta file.
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Filename of output fasta file. Cannot be the same as infa.
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simonvh/genomepy | genomepy/utils.py | cmd_ok | def cmd_ok(cmd):
"""Returns True if cmd can be run.
"""
try:
sp.check_call(cmd, stderr=sp.PIPE, stdout=sp.PIPE)
except sp.CalledProcessError:
# bwa gives return code of 1 with no argument
pass
except:
sys.stderr.write("{} not found, skipping\n".format(cmd))
r... | python | def cmd_ok(cmd):
"""Returns True if cmd can be run.
"""
try:
sp.check_call(cmd, stderr=sp.PIPE, stdout=sp.PIPE)
except sp.CalledProcessError:
# bwa gives return code of 1 with no argument
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simonvh/genomepy | genomepy/utils.py | run_index_cmd | def run_index_cmd(name, cmd):
"""Run command, show errors if the returncode is non-zero."""
sys.stderr.write("Creating {} index...\n".format(name))
# Create index
p = sp.Popen(cmd, shell=True, stdout=sp.PIPE, stderr=sp.PIPE)
stdout, stderr = p.communicate()
if p.returncode != 0:
sys.stde... | python | def run_index_cmd(name, cmd):
"""Run command, show errors if the returncode is non-zero."""
sys.stderr.write("Creating {} index...\n".format(name))
# Create index
p = sp.Popen(cmd, shell=True, stdout=sp.PIPE, stderr=sp.PIPE)
stdout, stderr = p.communicate()
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peo3/cgroup-utils | cgutils/cgroup.py | scan_cgroups | def scan_cgroups(subsys_name, filters=list()):
"""
It returns a control group hierarchy which belong to the subsys_name.
When collecting cgroups, filters are applied to the cgroups. See pydoc
of apply_filters method of CGroup for more information about the filters.
"""
status = SubsystemStatus()... | python | def scan_cgroups(subsys_name, filters=list()):
"""
It returns a control group hierarchy which belong to the subsys_name.
When collecting cgroups, filters are applied to the cgroups. See pydoc
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peo3/cgroup-utils | cgutils/cgroup.py | walk_cgroups | def walk_cgroups(cgroup, action, opaque):
"""
The function applies the action function with the opaque object
to each control group under the cgroup recursively.
"""
action(cgroup, opaque)
for child in cgroup.childs:
walk_cgroups(child, action, opaque) | python | def walk_cgroups(cgroup, action, opaque):
"""
The function applies the action function with the opaque object
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"""
action(cgroup, opaque)
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peo3/cgroup-utils | cgutils/cgroup.py | get_cgroup | def get_cgroup(fullpath):
"""
It returns a CGroup object which is pointed by the fullpath.
"""
# Canonicalize symbolic links
fullpath = os.path.realpath(fullpath)
status = SubsystemStatus()
name = None
for name, path in status.paths.items():
if path in fullpath:
brea... | python | def get_cgroup(fullpath):
"""
It returns a CGroup object which is pointed by the fullpath.
"""
# Canonicalize symbolic links
fullpath = os.path.realpath(fullpath)
status = SubsystemStatus()
name = None
for name, path in status.paths.items():
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peo3/cgroup-utils | cgutils/cgroup.py | SubsystemStatus._parse_proc_cgroups | def _parse_proc_cgroups(self):
"""Parse /proc/cgroups"""
"""
#subsys_name hierarchy num_cgroups enabled
cpuset 0 1 1
ns 0 1 1
cpu 1 10 1
cpuacct 0 1 1
memory 0 1 1
devices 0 1 1
freezer 0 1 1
net_cls 0 1 1
"""
for l... | python | def _parse_proc_cgroups(self):
"""Parse /proc/cgroups"""
"""
#subsys_name hierarchy num_cgroups enabled
cpuset 0 1 1
ns 0 1 1
cpu 1 10 1
cpuacct 0 1 1
memory 0 1 1
devices 0 1 1
freezer 0 1 1
net_cls 0 1 1
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peo3/cgroup-utils | cgutils/cgroup.py | SubsystemStatus._parse_proc_mount | def _parse_proc_mount(self):
"""Parse /proc/mounts"""
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cgroup /cgroup/memory cgroup rw,relatime,memory 0 0
cgroup /cgroup/blkio cgroup rw,relatime,blkio 0 0
cgroup /cgroup/freezer c... | python | def _parse_proc_mount(self):
"""Parse /proc/mounts"""
"""
cgroup /cgroup/cpu cgroup rw,relatime,cpuacct,cpu,release_agent=/sbin/cgroup_clean 0 0
cgroup /cgroup/memory cgroup rw,relatime,memory 0 0
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peo3/cgroup-utils | cgutils/cgroup.py | RdmaStat.parse | def parse(content):
""" Parse rdma.curren and rdma.max
Example contents:
mlx4_0 hca_handle=2 hca_object=2000
ocrdma1 hca_handle=3 hca_object=max
>>> RdmaStat.parse("mlx4_0 hca_handle=2 hca_object=2000\\nocrdma1 hca_handle=3 hca_object=max")
{'mlx4_0': {'hca_handle':... | python | def parse(content):
""" Parse rdma.curren and rdma.max
Example contents:
mlx4_0 hca_handle=2 hca_object=2000
ocrdma1 hca_handle=3 hca_object=max
>>> RdmaStat.parse("mlx4_0 hca_handle=2 hca_object=2000\\nocrdma1 hca_handle=3 hca_object=max")
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peo3/cgroup-utils | cgutils/cgroup.py | CGroup.apply_filters | def apply_filters(self, filters):
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"""
_configs = self.configs
_stats = self.stats
self.configs = {}
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"""
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"""
configs = {}
for name, default in self.configs.items():
cls = default.__class__
path = self.paths[name]
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"""
It returns a name and a current value pairs of control files
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configs = {}
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peo3/cgroup-utils | cgutils/cgroup.py | CGroup.get_stats | def get_stats(self):
"""
It returns a name and a value pairs of control files
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"""
stats = {}
for name, cls in self.stats.items():
path = self.paths[name]
if os.path.exists(path):
try:
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"""
It returns a name and a value pairs of control files
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stats = {}
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peo3/cgroup-utils | cgutils/cgroup.py | CGroup.update | def update(self):
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pids = fileops.readlines(self.paths['cgroup.procs'])
self.pids = [int(pid) for pid in pids if pid != '']
self.n_procs = len(pids) | python | def update(self):
"""It updates process information of the cgroup."""
pids = fileops.readlines(self.paths['cgroup.procs'])
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peo3/cgroup-utils | cgutils/cgroup.py | EventListener.register | def register(self, arguments=list()):
"""
Register a target file with arguments (if required) to a event_control file
which we want to be notified events.
"""
target_name = self.target_name
if target_name in ['memory.usage_in_bytes', 'memory.memsw.usage_in_bytes']:
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"""
Register a target file with arguments (if required) to a event_control file
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peakwinter/python-nginx | nginx.py | loads | def loads(data, conf=True):
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Write an nginx configuration to file.
:param obj obj: nginx object (Conf, Server, Container)
:param str path: path to nginx configuration on disk
:returns: path the configuration was written to
"""
with open(path, 'w') as f:
dump(obj, f)
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Write an nginx configuration to file.
:param obj obj: nginx object (Conf, Server, Container)
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peakwinter/python-nginx | nginx.py | Conf.remove | def remove(self, *args):
"""
Remove object(s) from the Conf.
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:returns: full list of Conf's child objects
"""
for x in args:
self.children.remove(x)
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Remove object(s) from the Conf.
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Return child object(s) of this Conf that satisfy certain criteria.
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peakwinter/python-nginx | nginx.py | Conf.as_strings | def as_strings(self):
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peakwinter/python-nginx | nginx.py | Container.add | def add(self, *args):
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Add object(s) to the Container.
:param *args: Any objects to add to the Container.
:returns: full list of Container's child objects
"""
self.children.extend(args)
bump_child_depth(self, self._depth)
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"""
Add object(s) to the Container.
:param *args: Any objects to add to the Container.
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peakwinter/python-nginx | nginx.py | Container.as_list | def as_list(self):
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peakwinter/python-nginx | nginx.py | Container.as_dict | def as_dict(self):
"""Return all child objects in nested dict."""
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return {'{0} {1}'.format(self.name, self.value): dicts} | python | def as_dict(self):
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peakwinter/python-nginx | nginx.py | Container.as_strings | def as_strings(self):
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peakwinter/python-nginx | nginx.py | Key.as_strings | def as_strings(self):
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | convert_aws_args | def convert_aws_args(aws_args):
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"""Convert old style options into arguments to boto3.session.Session."""
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | AutoCommiter.run | def run(self):
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | DocManager._index_and_mapping | def _index_and_mapping(self, namespace):
"""Helper method for getting the index and type from a namespace."""
index, doc_type = namespace.split(".", 1)
return index.lower(), doc_type | python | def _index_and_mapping(self, namespace):
"""Helper method for getting the index and type from a namespace."""
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | DocManager._stream_search | def _stream_search(self, *args, **kwargs):
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"""Helper method for iterating over ES search results."""
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | DocManager.search | def search(self, start_ts, end_ts):
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"""Query Elasticsearch for documents in a time range.
This method is used to find documents that may be in conflict during
a rollback event in MongoDB.
"""
return self._stream_search(
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | DocManager.commit | def commit(self):
"""Send buffered requests and refresh all indexes."""
self.send_buffered_operations()
retry_until_ok(self.elastic.indices.refresh, index="") | python | def commit(self):
"""Send buffered requests and refresh all indexes."""
self.send_buffered_operations()
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | BulkBuffer.add_upsert | def add_upsert(self, action, meta_action, doc_source, update_spec):
"""
Function which stores sources for "insert" actions
and decide if for "update" action has to add docs to
get source buffer
"""
# Whenever update_spec is provided to this method
# it means that... | python | def add_upsert(self, action, meta_action, doc_source, update_spec):
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Function which stores sources for "insert" actions
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | BulkBuffer.add_doc_to_update | def add_doc_to_update(self, action, update_spec, action_buffer_index):
"""
Prepare document for update based on Elasticsearch response.
Set flag if document needs to be retrieved from Elasticsearch
"""
doc = {
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Prepare document for update based on Elasticsearch response.
Set flag if document needs to be retrieved from Elasticsearch
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | BulkBuffer.should_get_id | def should_get_id(self, action):
"""
Mark document to retrieve its source from Elasticsearch.
Returns:
True - if marking document for the first time in this bulk
False - if document has been already marked
"""
mapping_ids = self.doc_to_get.setdefault(actio... | python | def should_get_id(self, action):
"""
Mark document to retrieve its source from Elasticsearch.
Returns:
True - if marking document for the first time in this bulk
False - if document has been already marked
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | BulkBuffer.get_docs_sources_from_ES | def get_docs_sources_from_ES(self):
"""Get document sources using MGET elasticsearch API"""
docs = [doc for doc, _, _, get_from_ES in self.doc_to_update if get_from_ES]
if docs:
documents = self.docman.elastic.mget(body={"docs": docs}, realtime=True)
return iter(documents... | python | def get_docs_sources_from_ES(self):
"""Get document sources using MGET elasticsearch API"""
docs = [doc for doc, _, _, get_from_ES in self.doc_to_update if get_from_ES]
if docs:
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | BulkBuffer.update_sources | def update_sources(self):
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | BulkBuffer.add_to_sources | def add_to_sources(self, action, doc_source):
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mapping = self.sources.setdefault(action["_index"], {}).setdefault(
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)
mapping[action["_id"]] = doc_source | python | def add_to_sources(self, action, doc_source):
"""Store sources locally"""
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | BulkBuffer.clean_up | def clean_up(self):
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yougov/elastic2-doc-manager | mongo_connector/doc_managers/elastic2_doc_manager.py | BulkBuffer.get_buffer | def get_buffer(self):
"""Get buffer which needs to be bulked to elasticsearch"""
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self.update_sources()
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citruz/beacontools | beacontools/scanner.py | Monitor.run | def run(self):
"""Continously scan for BLE advertisements."""
self.socket = self.bluez.hci_open_dev(self.bt_device_id)
filtr = self.bluez.hci_filter_new()
self.bluez.hci_filter_all_events(filtr)
self.bluez.hci_filter_set_ptype(filtr, self.bluez.HCI_EVENT_PKT)
self.socket... | python | def run(self):
"""Continously scan for BLE advertisements."""
self.socket = self.bluez.hci_open_dev(self.bt_device_id)
filtr = self.bluez.hci_filter_new()
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citruz/beacontools | beacontools/scanner.py | Monitor.toggle_scan | def toggle_scan(self, enable, filter_duplicates=False):
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Args:
enable: boolean value to enable (True) or disable (False) scanner
filter_duplicates: boolean value to enable/disable filter, that
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enable: boolean value to enable (True) or disable (False) scanner
filter_duplicates: boolean value to enable/disable filter, that
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citruz/beacontools | beacontools/scanner.py | Monitor.process_packet | def process_packet(self, pkt):
"""Parse the packet and call callback if one of the filters matches."""
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citruz/beacontools | beacontools/scanner.py | Monitor.save_bt_addr | def save_bt_addr(self, packet, bt_addr):
"""Add to the list of mappings."""
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# remove out old mapping
new_mappings = [m for m in self.eddystone_mappings if m[0] != bt_addr]
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... | python | def save_bt_addr(self, packet, bt_addr):
"""Add to the list of mappings."""
if isinstance(packet, EddystoneUIDFrame):
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citruz/beacontools | beacontools/scanner.py | Monitor.get_properties | def get_properties(self, packet, bt_addr):
"""Get properties of beacon depending on type."""
if is_one_of(packet, [EddystoneTLMFrame, EddystoneURLFrame, \
EddystoneEncryptedTLMFrame, EddystoneEIDFrame]):
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citruz/beacontools | beacontools/scanner.py | Monitor.properties_from_mapping | def properties_from_mapping(self, bt_addr):
"""Retrieve properties (namespace, instance) for the specified bt address."""
for addr, properties in self.eddystone_mappings:
if addr == bt_addr:
return properties
return None | python | def properties_from_mapping(self, bt_addr):
"""Retrieve properties (namespace, instance) for the specified bt address."""
for addr, properties in self.eddystone_mappings:
if addr == bt_addr:
return properties
return None | [
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citruz/beacontools | beacontools/scanner.py | Monitor.terminate | def terminate(self):
"""Signal runner to stop and join thread."""
self.toggle_scan(False)
self.keep_going = False
self.join() | python | def terminate(self):
"""Signal runner to stop and join thread."""
self.toggle_scan(False)
self.keep_going = False
self.join() | [
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citruz/beacontools | beacontools/utils.py | data_to_uuid | def data_to_uuid(data):
"""Convert an array of binary data to the iBeacon uuid format."""
string = data_to_hexstring(data)
return string[0:8]+'-'+string[8:12]+'-'+string[12:16]+'-'+string[16:20]+'-'+string[20:32] | python | def data_to_uuid(data):
"""Convert an array of binary data to the iBeacon uuid format."""
string = data_to_hexstring(data)
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citruz/beacontools | beacontools/utils.py | bt_addr_to_string | def bt_addr_to_string(addr):
"""Convert a binary string to the hex representation."""
addr_str = array.array('B', addr)
addr_str.reverse()
hex_str = hexlify(addr_str.tostring()).decode('ascii')
# insert ":" seperator between the bytes
return ':'.join(a+b for a, b in zip(hex_str[::2], hex_str[1::... | python | def bt_addr_to_string(addr):
"""Convert a binary string to the hex representation."""
addr_str = array.array('B', addr)
addr_str.reverse()
hex_str = hexlify(addr_str.tostring()).decode('ascii')
# insert ":" seperator between the bytes
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citruz/beacontools | beacontools/utils.py | is_one_of | def is_one_of(obj, types):
"""Return true iff obj is an instance of one of the types."""
for type_ in types:
if isinstance(obj, type_):
return True
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"""Return true iff obj is an instance of one of the types."""
for type_ in types:
if isinstance(obj, type_):
return True
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citruz/beacontools | beacontools/utils.py | is_packet_type | def is_packet_type(cls):
"""Check if class is one the packet types."""
from .packet_types import EddystoneUIDFrame, EddystoneURLFrame, \
EddystoneEncryptedTLMFrame, EddystoneTLMFrame, \
EddystoneEIDFrame, IBeaconAdvertisement, \
... | python | def is_packet_type(cls):
"""Check if class is one the packet types."""
from .packet_types import EddystoneUIDFrame, EddystoneURLFrame, \
EddystoneEncryptedTLMFrame, EddystoneTLMFrame, \
EddystoneEIDFrame, IBeaconAdvertisement, \
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citruz/beacontools | beacontools/utils.py | bin_to_int | def bin_to_int(string):
"""Convert a one element byte string to signed int for python 2 support."""
if isinstance(string, str):
return struct.unpack("b", string)[0]
else:
return struct.unpack("b", bytes([string]))[0] | python | def bin_to_int(string):
"""Convert a one element byte string to signed int for python 2 support."""
if isinstance(string, str):
return struct.unpack("b", string)[0]
else:
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citruz/beacontools | beacontools/utils.py | get_mode | def get_mode(device_filter):
"""Determine which beacons the scanner should look for."""
from .device_filters import IBeaconFilter, EddystoneFilter, BtAddrFilter, EstimoteFilter
if device_filter is None or len(device_filter) == 0:
return ScannerMode.MODE_ALL
mode = ScannerMode.MODE_NONE
for ... | python | def get_mode(device_filter):
"""Determine which beacons the scanner should look for."""
from .device_filters import IBeaconFilter, EddystoneFilter, BtAddrFilter, EstimoteFilter
if device_filter is None or len(device_filter) == 0:
return ScannerMode.MODE_ALL
mode = ScannerMode.MODE_NONE
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citruz/beacontools | beacontools/device_filters.py | DeviceFilter.matches | def matches(self, filter_props):
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return False
found_one = False
for key, value in filter_props.items():
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citruz/beacontools | beacontools/parser.py | parse_packet | def parse_packet(packet):
"""Parse a beacon advertisement packet."""
frame = parse_ltv_packet(packet)
if frame is None:
frame = parse_ibeacon_packet(packet)
return frame | python | def parse_packet(packet):
"""Parse a beacon advertisement packet."""
frame = parse_ltv_packet(packet)
if frame is None:
frame = parse_ibeacon_packet(packet)
return frame | [
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citruz/beacontools | beacontools/parser.py | parse_ltv_packet | def parse_ltv_packet(packet):
"""Parse a tag-length-value style beacon packet."""
try:
frame = LTVFrame.parse(packet)
for ltv in frame:
if ltv['type'] == SERVICE_DATA_TYPE:
data = ltv['value']
if data["service_identifier"] == EDDYSTONE_UUID:
... | python | def parse_ltv_packet(packet):
"""Parse a tag-length-value style beacon packet."""
try:
frame = LTVFrame.parse(packet)
for ltv in frame:
if ltv['type'] == SERVICE_DATA_TYPE:
data = ltv['value']
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citruz/beacontools | beacontools/parser.py | parse_eddystone_service_data | def parse_eddystone_service_data(data):
"""Parse Eddystone service data."""
if data['frame_type'] == EDDYSTONE_UID_FRAME:
return EddystoneUIDFrame(data['frame'])
elif data['frame_type'] == EDDYSTONE_TLM_FRAME:
if data['frame']['tlm_version'] == EDDYSTONE_TLM_ENCRYPTED:
return Ed... | python | def parse_eddystone_service_data(data):
"""Parse Eddystone service data."""
if data['frame_type'] == EDDYSTONE_UID_FRAME:
return EddystoneUIDFrame(data['frame'])
elif data['frame_type'] == EDDYSTONE_TLM_FRAME:
if data['frame']['tlm_version'] == EDDYSTONE_TLM_ENCRYPTED:
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citruz/beacontools | beacontools/parser.py | parse_estimote_service_data | def parse_estimote_service_data(data):
"""Parse Estimote service data."""
if data['frame_type'] & 0xF == ESTIMOTE_TELEMETRY_FRAME:
protocol_version = (data['frame_type'] & 0xF0) >> 4
if data['frame']['subframe_type'] == ESTIMOTE_TELEMETRY_SUBFRAME_A:
return EstimoteTelemetryFrameA(da... | python | def parse_estimote_service_data(data):
"""Parse Estimote service data."""
if data['frame_type'] & 0xF == ESTIMOTE_TELEMETRY_FRAME:
protocol_version = (data['frame_type'] & 0xF0) >> 4
if data['frame']['subframe_type'] == ESTIMOTE_TELEMETRY_SUBFRAME_A:
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citruz/beacontools | beacontools/packet_types/estimote.py | EstimoteTelemetryFrameA.parse_motion_state | def parse_motion_state(val):
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number = val & 0b00111111
unit = (val & 0b11000000) >> 6
if unit == 1:
number *= 60 # minutes
elif unit == 2:
number *= 60 * 60 # hours
elif unit == 3 and number < 32:
... | python | def parse_motion_state(val):
"""Convert motion state byte to seconds."""
number = val & 0b00111111
unit = (val & 0b11000000) >> 6
if unit == 1:
number *= 60 # minutes
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number *= 60 * 60 # hours
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Polyconseil/zbarlight | src/zbarlight/__init__.py | scan_codes | def scan_codes(code_types, image):
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Get *code_type* codes from a PIL Image.
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- **Linear barcode**: Code 128 (`code128`), Code 93 (`code93`),... | python | def scan_codes(code_types, image):
"""
Get *code_type* codes from a PIL Image.
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- **EAN/UPC**: EAN-13 (`ean13`), UPC-A (`upca`), EAN-8 (`ean8`) and UPC-E (`upce`)
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Polyconseil/zbarlight | src/zbarlight/__init__.py | copy_image_on_background | def copy_image_on_background(image, color=WHITE):
"""
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Args:
image (PIL.Image.Image): Image to copy
color (tuple): Background color usually WHITE or BLACK
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PIL.Image.Image
"""
background = Image.ne... | python | def copy_image_on_background(image, color=WHITE):
"""
Create a new image by copying the image on a *color* background.
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image (PIL.Image.Image): Image to copy
color (tuple): Background color usually WHITE or BLACK
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PIL.Image.Image
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Polyconseil/zbarlight | docs/conf.py | _Zbarlight.monkey_patch | def monkey_patch(cls):
"""Monkey path zbarlight C extension on Read The Docs"""
on_read_the_docs = os.environ.get('READTHEDOCS', False)
if on_read_the_docs:
sys.modules['zbarlight._zbarlight'] = cls | python | def monkey_patch(cls):
"""Monkey path zbarlight C extension on Read The Docs"""
on_read_the_docs = os.environ.get('READTHEDOCS', False)
if on_read_the_docs:
sys.modules['zbarlight._zbarlight'] = cls | [
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adafruit/Adafruit_CircuitPython_framebuf | adafruit_framebuf.py | MHMSBFormat.fill | def fill(framebuf, color):
"""completely fill/clear the buffer with a color"""
if color:
fill = 0xFF
else:
fill = 0x00
for i in range(len(framebuf.buf)):
framebuf.buf[i] = fill | python | def fill(framebuf, color):
"""completely fill/clear the buffer with a color"""
if color:
fill = 0xFF
else:
fill = 0x00
for i in range(len(framebuf.buf)):
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adafruit/Adafruit_CircuitPython_framebuf | adafruit_framebuf.py | MHMSBFormat.fill_rect | def fill_rect(framebuf, x, y, width, height, color):
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# pylint: disable=too-many-arguments
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# pylint: disable=too-many-arguments
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adafruit/Adafruit_CircuitPython_framebuf | adafruit_framebuf.py | MVLSBFormat.set_pixel | def set_pixel(framebuf, x, y, color):
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index = (y >> 3) * framebuf.stride + x
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"""Set a given pixel to a color."""
index = (y >> 3) * framebuf.stride + x
offset = y & 0x07
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