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The dataset generation failed
Error code: DatasetGenerationError
Exception: TypeError
Message: Couldn't cast array of type string to null
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 714, in write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2224, in cast_table_to_schema
cast_array_to_feature(
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 1795, in wrapper
return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2086, in cast_array_to_feature
return array_cast(
^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 1797, in wrapper
return func(array, *args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 1948, in array_cast
raise TypeError(f"Couldn't cast array of type {_short_str(array.type)} to {_short_str(pa_type)}")
TypeError: Couldn't cast array of type string to null
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1339, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 972, in convert_to_parquet
builder.download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 894, in download_and_prepare
self._download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 970, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1702, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1858, in _prepare_split_single
raise DatasetGenerationError("An error occurred while generating the dataset") from e
datasets.exceptions.DatasetGenerationError: An error occurred while generating the datasetNeed help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
entry string | success bool | error null | lddt dict | num_pred_atoms int64 | num_gt_atoms int64 | num_aligned_atoms int64 | alignment_coverage dict | heavy_chain dict | light_chain dict | heavy_chain_atom_counts dict | light_chain_atom_counts dict |
|---|---|---|---|---|---|---|---|---|---|---|---|
1ar1_C_D_B_sample_0 | true | null | {
"total": 0.9677732586860657,
"cdr": 0.8684849441051483,
"framework": 0.988789975643158
} | 988 | 904 | 904 | {
"pred_coverage": 0.9149797570850202,
"gt_coverage": 1,
"full_coverage": false
} | {
"chain_id": "C",
"total": 0.9734393954277039,
"cdr": 0.8640518188476562,
"framework": 0.9936376214027405,
"cdr1": 0.9940476417541504,
"cdr2": 0.9836956262588501,
"cdr3": 0.8960317373275757,
"num_residues": 118,
"num_cdr_residues": 22
} | {
"chain_id": "D",
"total": 0.9621071219444275,
"cdr": 0.8729180693626404,
"framework": 0.9839423298835754,
"cdr1": 0.9956616163253784,
"cdr2": 0.9959893226623535,
"cdr3": 0.7233632802963257,
"num_residues": 108,
"num_cdr_residues": 28
} | {
"num_pred_atoms": 508,
"num_gt_atoms": 472,
"num_aligned_atoms": 472
} | {
"num_pred_atoms": 480,
"num_gt_atoms": 432,
"num_aligned_atoms": 432
} |
1ar1_C_D_B_sample_1 | true | null | {
"total": 0.9637055397033691,
"cdr": 0.8754318058490753,
"framework": 0.9808663725852966
} | 988 | 904 | 904 | {
"pred_coverage": 0.9149797570850202,
"gt_coverage": 1,
"full_coverage": false
} | {
"chain_id": "C",
"total": 0.9758332967758179,
"cdr": 0.8739528059959412,
"framework": 0.994111955165863,
"cdr1": 0.9940476417541504,
"cdr2": 0.9800724387168884,
"cdr3": 0.9150793552398682,
"num_residues": 118,
"num_cdr_residues": 22
} | {
"chain_id": "D",
"total": 0.9515777826309204,
"cdr": 0.8769108057022095,
"framework": 0.9676207900047302,
"cdr1": 0.9994577169418335,
"cdr2": 1,
"cdr3": 0.8010269403457642,
"num_residues": 108,
"num_cdr_residues": 28
} | {
"num_pred_atoms": 508,
"num_gt_atoms": 472,
"num_aligned_atoms": 472
} | {
"num_pred_atoms": 480,
"num_gt_atoms": 432,
"num_aligned_atoms": 432
} |
1ar1_C_D_B_sample_2 | true | null | {
"total": 0.9587732255458832,
"cdr": 0.8531948328018188,
"framework": 0.9817171692848206
} | 988 | 904 | 904 | {
"pred_coverage": 0.9149797570850202,
"gt_coverage": 1,
"full_coverage": false
} | {
"chain_id": "C",
"total": 0.9671583771705627,
"cdr": 0.8456778526306152,
"framework": 0.9907689094543457,
"cdr1": 0.9907407164573669,
"cdr2": 0.97826087474823,
"cdr3": 0.8904761672019958,
"num_residues": 118,
"num_cdr_residues": 22
} | {
"chain_id": "D",
"total": 0.9503880739212036,
"cdr": 0.8607118129730225,
"framework": 0.9726654291152954,
"cdr1": 0.9964750409126282,
"cdr2": 0.999331533908844,
"cdr3": 0.7978177070617676,
"num_residues": 108,
"num_cdr_residues": 28
} | {
"num_pred_atoms": 508,
"num_gt_atoms": 472,
"num_aligned_atoms": 472
} | {
"num_pred_atoms": 480,
"num_gt_atoms": 432,
"num_aligned_atoms": 432
} |
1ar1_C_D_B_sample_3 | true | null | {
"total": 0.9645877182483673,
"cdr": 0.8788366913795471,
"framework": 0.9823752343654633
} | 988 | 904 | 904 | {
"pred_coverage": 0.9149797570850202,
"gt_coverage": 1,
"full_coverage": false
} | {
"chain_id": "C",
"total": 0.9737358093261719,
"cdr": 0.8761424422264099,
"framework": 0.9915369153022766,
"cdr1": 0.9914020895957947,
"cdr2": 1,
"cdr3": 0.8746031522750854,
"num_residues": 118,
"num_cdr_residues": 22
} | {
"chain_id": "D",
"total": 0.9554396271705627,
"cdr": 0.8815309405326843,
"framework": 0.9732135534286499,
"cdr1": 0.9991865754127502,
"cdr2": 0.9966577291488647,
"cdr3": 0.7785622477531433,
"num_residues": 108,
"num_cdr_residues": 28
} | {
"num_pred_atoms": 508,
"num_gt_atoms": 472,
"num_aligned_atoms": 472
} | {
"num_pred_atoms": 480,
"num_gt_atoms": 432,
"num_aligned_atoms": 432
} |
1ar1_C_D_B_sample_4 | true | null | {
"total": 0.9669027328491211,
"cdr": 0.8991189301013947,
"framework": 0.9836473166942596
} | 988 | 904 | 904 | {
"pred_coverage": 0.9149797570850202,
"gt_coverage": 1,
"full_coverage": false
} | {
"chain_id": "C",
"total": 0.9740777611732483,
"cdr": 0.9094630479812622,
"framework": 0.9893307685852051,
"cdr1": 0.9993386268615723,
"cdr2": 0.9773550629615784,
"cdr3": 0.9214285612106323,
"num_residues": 118,
"num_cdr_residues": 22
} | {
"chain_id": "D",
"total": 0.9597277045249939,
"cdr": 0.8887748122215271,
"framework": 0.9779638648033142,
"cdr1": 0.9970173239707947,
"cdr2": 0.9953208565711975,
"cdr3": 0.7641206383705139,
"num_residues": 108,
"num_cdr_residues": 28
} | {
"num_pred_atoms": 508,
"num_gt_atoms": 472,
"num_aligned_atoms": 472
} | {
"num_pred_atoms": 480,
"num_gt_atoms": 432,
"num_aligned_atoms": 432
} |
1bgx_H_L_T_sample_0 | true | null | {
"total": 0.8272567093372345,
"cdr": 0.7143783271312714,
"framework": 0.842929482460022
} | 1,692 | 1,676 | 1,676 | {
"pred_coverage": 0.9905437352245863,
"gt_coverage": 1,
"full_coverage": false
} | {
"chain_id": "H",
"total": 0.8009976744651794,
"cdr": 0.7305842638015747,
"framework": 0.8106496334075928,
"cdr1": 0.8235887289047241,
"cdr2": 0.8999999761581421,
"cdr3": 0.703903079032898,
"num_residues": 209,
"num_cdr_residues": 23
} | {
"chain_id": "L",
"total": 0.8535157442092896,
"cdr": 0.698172390460968,
"framework": 0.8752093315124512,
"cdr1": 0.8546980023384094,
"cdr2": 0.9035326242446899,
"cdr3": 0.7174603343009949,
"num_residues": 210,
"num_cdr_residues": 26
} | {
"num_pred_atoms": 852,
"num_gt_atoms": 836,
"num_aligned_atoms": 836
} | {
"num_pred_atoms": 840,
"num_gt_atoms": 840,
"num_aligned_atoms": 840
} |
1bgx_H_L_T_sample_1 | true | null | {
"total": 0.8379184305667877,
"cdr": 0.7208329439163208,
"framework": 0.8545876145362854
} | 1,692 | 1,676 | 1,676 | {
"pred_coverage": 0.9905437352245863,
"gt_coverage": 1,
"full_coverage": false
} | {
"chain_id": "H",
"total": 0.816328227519989,
"cdr": 0.7350373864173889,
"framework": 0.8272666335105896,
"cdr1": 0.7998992204666138,
"cdr2": 0.8894736766815186,
"cdr3": 0.6904441714286804,
"num_residues": 209,
"num_cdr_residues": 23
} | {
"chain_id": "L",
"total": 0.8595086336135864,
"cdr": 0.7066285014152527,
"framework": 0.8819085955619812,
"cdr1": 0.8919463157653809,
"cdr2": 0.907608687877655,
"cdr3": 0.708730161190033,
"num_residues": 210,
"num_cdr_residues": 26
} | {
"num_pred_atoms": 852,
"num_gt_atoms": 836,
"num_aligned_atoms": 836
} | {
"num_pred_atoms": 840,
"num_gt_atoms": 840,
"num_aligned_atoms": 840
} |
1bgx_H_L_T_sample_2 | true | null | {
"total": 0.8414029777050018,
"cdr": 0.73578280210495,
"framework": 0.8573051989078522
} | 1,692 | 1,676 | 1,676 | {
"pred_coverage": 0.9905437352245863,
"gt_coverage": 1,
"full_coverage": false
} | {
"chain_id": "H",
"total": 0.8242046236991882,
"cdr": 0.7520484328269958,
"framework": 0.8350406289100647,
"cdr1": 0.8175403475761414,
"cdr2": 0.8868421316146851,
"cdr3": 0.710296094417572,
"num_residues": 209,
"num_cdr_residues": 23
} | {
"chain_id": "L",
"total": 0.8586013317108154,
"cdr": 0.719517171382904,
"framework": 0.8795697689056396,
"cdr1": 0.8848993182182312,
"cdr2": 0.9069293737411499,
"cdr3": 0.7138888835906982,
"num_residues": 210,
"num_cdr_residues": 26
} | {
"num_pred_atoms": 852,
"num_gt_atoms": 836,
"num_aligned_atoms": 836
} | {
"num_pred_atoms": 840,
"num_gt_atoms": 840,
"num_aligned_atoms": 840
} |
1bgx_H_L_T_sample_3 | true | null | {
"total": 0.8278908133506775,
"cdr": 0.7129775583744049,
"framework": 0.8446937501430511
} | 1,692 | 1,676 | 1,676 | {
"pred_coverage": 0.9905437352245863,
"gt_coverage": 1,
"full_coverage": false
} | {
"chain_id": "H",
"total": 0.8059401512145996,
"cdr": 0.7308514714241028,
"framework": 0.8144192099571228,
"cdr1": 0.7943548560142517,
"cdr2": 0.8960526585578918,
"cdr3": 0.6978465914726257,
"num_residues": 209,
"num_cdr_residues": 23
} | {
"chain_id": "L",
"total": 0.8498414754867554,
"cdr": 0.695103645324707,
"framework": 0.8749682903289795,
"cdr1": 0.8724831938743591,
"cdr2": 0.8729619383811951,
"cdr3": 0.7055555582046509,
"num_residues": 210,
"num_cdr_residues": 26
} | {
"num_pred_atoms": 852,
"num_gt_atoms": 836,
"num_aligned_atoms": 836
} | {
"num_pred_atoms": 840,
"num_gt_atoms": 840,
"num_aligned_atoms": 840
} |
1bgx_H_L_T_sample_4 | true | null | {
"total": 0.8386742472648621,
"cdr": 0.7073155045509338,
"framework": 0.8558338582515717
} | 1,692 | 1,676 | 1,676 | {
"pred_coverage": 0.9905437352245863,
"gt_coverage": 1,
"full_coverage": false
} | {
"chain_id": "H",
"total": 0.8192234039306641,
"cdr": 0.7092981934547424,
"framework": 0.8305584192276001,
"cdr1": 0.8024193644523621,
"cdr2": 0.8868421316146851,
"cdr3": 0.7096231579780579,
"num_residues": 209,
"num_cdr_residues": 23
} | {
"chain_id": "L",
"total": 0.8581250905990601,
"cdr": 0.7053328156471252,
"framework": 0.8811092972755432,
"cdr1": 0.8365771770477295,
"cdr2": 0.8994565010070801,
"cdr3": 0.7321428656578064,
"num_residues": 210,
"num_cdr_residues": 26
} | {
"num_pred_atoms": 852,
"num_gt_atoms": 836,
"num_aligned_atoms": 836
} | {
"num_pred_atoms": 840,
"num_gt_atoms": 840,
"num_aligned_atoms": 840
} |
1eo8_H_L_A_sample_0 | true | null | {
"total": 0.9207079410552979,
"cdr": 0.8496992588043213,
"framework": 0.9260794520378113
} | 1,708 | 1,708 | 1,708 | {
"pred_coverage": 1,
"gt_coverage": 1,
"full_coverage": true
} | {
"chain_id": "H",
"total": 0.9201178550720215,
"cdr": 0.7729523777961731,
"framework": 0.9342435598373413,
"cdr1": 0.9583333134651184,
"cdr2": 0.967391312122345,
"cdr3": 0.6535714268684387,
"num_residues": 217,
"num_cdr_residues": 22
} | {
"chain_id": "L",
"total": 0.9212980270385742,
"cdr": 0.9264461398124695,
"framework": 0.9179153442382812,
"cdr1": 0.9475431442260742,
"cdr2": 0.9993279576301575,
"cdr3": 0.9208669066429138,
"num_residues": 210,
"num_cdr_residues": 25
} | {
"num_pred_atoms": 868,
"num_gt_atoms": 868,
"num_aligned_atoms": 868
} | {
"num_pred_atoms": 840,
"num_gt_atoms": 840,
"num_aligned_atoms": 840
} |
1eo8_H_L_A_sample_1 | true | null | {
"total": 0.9305636882781982,
"cdr": 0.8381065130233765,
"framework": 0.9377652704715729
} | 1,708 | 1,708 | 1,708 | {
"pred_coverage": 1,
"gt_coverage": 1,
"full_coverage": true
} | {
"chain_id": "H",
"total": 0.9358595609664917,
"cdr": 0.7676190733909607,
"framework": 0.950659990310669,
"cdr1": 0.9794973731040955,
"cdr2": 0.97826087474823,
"cdr3": 0.6472222208976746,
"num_residues": 217,
"num_cdr_residues": 22
} | {
"chain_id": "L",
"total": 0.9252678155899048,
"cdr": 0.9085939526557922,
"framework": 0.9248705506324768,
"cdr1": 0.950863242149353,
"cdr2": 1,
"cdr3": 0.9193548560142517,
"num_residues": 210,
"num_cdr_residues": 25
} | {
"num_pred_atoms": 868,
"num_gt_atoms": 868,
"num_aligned_atoms": 868
} | {
"num_pred_atoms": 840,
"num_gt_atoms": 840,
"num_aligned_atoms": 840
} |
1eo8_H_L_A_sample_2 | true | null | {
"total": 0.9209448397159576,
"cdr": 0.8640302121639252,
"framework": 0.9235401451587677
} | 1,708 | 1,708 | 1,708 | {
"pred_coverage": 1,
"gt_coverage": 1,
"full_coverage": true
} | {
"chain_id": "H",
"total": 0.9241936802864075,
"cdr": 0.788190484046936,
"framework": 0.935626745223999,
"cdr1": 0.9867724776268005,
"cdr2": 0.98097825050354,
"cdr3": 0.6519841551780701,
"num_residues": 217,
"num_cdr_residues": 22
} | {
"chain_id": "L",
"total": 0.9176959991455078,
"cdr": 0.9398699402809143,
"framework": 0.9114535450935364,
"cdr1": 0.9624834060668945,
"cdr2": 0.9979838728904724,
"cdr3": 0.953125,
"num_residues": 210,
"num_cdr_residues": 25
} | {
"num_pred_atoms": 868,
"num_gt_atoms": 868,
"num_aligned_atoms": 868
} | {
"num_pred_atoms": 840,
"num_gt_atoms": 840,
"num_aligned_atoms": 840
} |
1eo8_H_L_A_sample_3 | true | null | {
"total": 0.9248126745223999,
"cdr": 0.8550480604171753,
"framework": 0.9297599196434021
} | 1,708 | 1,708 | 1,708 | {
"pred_coverage": 1,
"gt_coverage": 1,
"full_coverage": true
} | {
"chain_id": "H",
"total": 0.9299477338790894,
"cdr": 0.7713333368301392,
"framework": 0.944063663482666,
"cdr1": 0.9834656119346619,
"cdr2": 0.9501811861991882,
"cdr3": 0.6460317373275757,
"num_residues": 217,
"num_cdr_residues": 22
} | {
"chain_id": "L",
"total": 0.9196776151657104,
"cdr": 0.9387627840042114,
"framework": 0.9154561758041382,
"cdr1": 0.9465471506118774,
"cdr2": 0.9993279576301575,
"cdr3": 0.9450604915618896,
"num_residues": 210,
"num_cdr_residues": 25
} | {
"num_pred_atoms": 868,
"num_gt_atoms": 868,
"num_aligned_atoms": 868
} | {
"num_pred_atoms": 840,
"num_gt_atoms": 840,
"num_aligned_atoms": 840
} |
1eo8_H_L_A_sample_4 | true | null | {
"total": 0.9237649142742157,
"cdr": 0.8504515886306763,
"framework": 0.9283074736595154
} | 1,708 | 1,708 | 1,708 | {
"pred_coverage": 1,
"gt_coverage": 1,
"full_coverage": true
} | {
"chain_id": "H",
"total": 0.9264335036277771,
"cdr": 0.7812380790710449,
"framework": 0.938498318195343,
"cdr1": 0.976190447807312,
"cdr2": 0.9601449370384216,
"cdr3": 0.6527777910232544,
"num_residues": 217,
"num_cdr_residues": 22
} | {
"chain_id": "L",
"total": 0.9210963249206543,
"cdr": 0.9196650981903076,
"framework": 0.9181166291236877,
"cdr1": 0.9555112719535828,
"cdr2": 0.9966397881507874,
"cdr3": 0.9279233813285828,
"num_residues": 210,
"num_cdr_residues": 25
} | {
"num_pred_atoms": 868,
"num_gt_atoms": 868,
"num_aligned_atoms": 868
} | {
"num_pred_atoms": 840,
"num_gt_atoms": 840,
"num_aligned_atoms": 840
} |
1h0d_B_A_C_sample_0 | true | null | {
"total": 0.9549490511417389,
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2p48_B__A_sample_3 | true | null | {
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2p48_B__A_sample_4 | true | null | {
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3hfm_H_L_Y_sample_3 | true | null | {
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3hfm_H_L_Y_sample_4 | true | null | {
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3ldb_C_B_A_sample_0 | true | null | {
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3ldb_C_B_A_sample_1 | true | null | {
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3ldb_C_B_A_sample_2 | true | null | {
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3ldb_C_B_A_sample_3 | true | null | {
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3ldb_C_B_A_sample_4 | true | null | {
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3nif_E_F_C_sample_0 | true | null | {
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3nif_E_F_C_sample_1 | true | null | {
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3nif_E_F_C_sample_2 | true | null | {
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3nif_E_F_C_sample_3 | true | null | {
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3nif_E_F_C_sample_4 | true | null | {
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} |
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