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Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- cdr_info/7xic_K_L_B_cdr_info.json +193 -0
- cdr_info/8e1m_H_L_C_cdr_info.json +177 -0
- cdr_info/8q7o_A__C_cdr_info.json +94 -0
- cdr_info/8qz1_C__B_cdr_info.json +108 -0
- cdr_info/8qz3_C__B_cdr_info.json +110 -0
- cdr_info/8qz7_B__A_cdr_info.json +108 -0
- cdr_info/8r4b_B__A_cdr_info.json +104 -0
- cdr_info/8rek_H_L_A_cdr_info.json +173 -0
- cdr_info/8rh0_H_L_A_cdr_info.json +179 -0
- cdr_info/8rvn_H_L_F_cdr_info.json +179 -0
- cdr_info/8rz2_B_C_A_cdr_info.json +183 -0
- cdr_info/8s0l_B__A_cdr_info.json +112 -0
- cdr_info/8s0n_B__A_cdr_info.json +112 -0
- cdr_info/8s5w_B__A_cdr_info.json +102 -0
- cdr_info/8sgj_H_L_A_cdr_info.json +183 -0
- cdr_info/8sit_H_L_A_cdr_info.json +195 -0
- cdr_info/8smn_H_L_A_cdr_info.json +181 -0
- cdr_info/8sxp_H_L_C_cdr_info.json +189 -0
- cdr_info/8t06_C_D_A_cdr_info.json +175 -0
- cdr_info/8t9b_C_G_L_cdr_info.json +199 -0
- cdr_info/8tbb_H_L_D_cdr_info.json +181 -0
- cdr_info/8tco_F_G_C_cdr_info.json +193 -0
- cdr_info/8tfh_H_L_B_cdr_info.json +177 -0
- cdr_info/8tl3_G_H_AB_cdr_info.json +197 -0
- cdr_info/8tnn_H_G_C_cdr_info.json +177 -0
- cdr_info/8too_B_A_I_cdr_info.json +175 -0
- cdr_info/8tp7_D_F_A_cdr_info.json +195 -0
- cdr_info/8tq9_H_L_AB_cdr_info.json +185 -0
- cdr_info/8tr3_H_L_A_cdr_info.json +185 -0
- cdr_info/8ts0_H_L_A_cdr_info.json +181 -0
- cdr_info/8tx3_H_L_CD_cdr_info.json +181 -0
- cdr_info/8txt_H_L_EF_cdr_info.json +189 -0
- cdr_info/8ty7_H_L_AB_cdr_info.json +187 -0
- cdr_info/8tzu_D__B_cdr_info.json +108 -0
- cdr_info/8u31_C_B_A_cdr_info.json +197 -0
- cdr_info/8u32_C_B_A_cdr_info.json +197 -0
- cdr_info/8u5l_J_j_A_cdr_info.json +169 -0
- cdr_info/8udz_C_D_B_cdr_info.json +185 -0
- cdr_info/8urf_H_L_A_cdr_info.json +171 -0
- cdr_info/8uwz_C_D_F_cdr_info.json +177 -0
- cdr_info/8vun_G_I_C_cdr_info.json +175 -0
- cdr_info/8vuq_G_I_A_cdr_info.json +175 -0
- cdr_info/8vww_B_C_A_cdr_info.json +179 -0
- cdr_info/8vww_H_L_A_cdr_info.json +175 -0
- cdr_info/8w0v_H_L_C_cdr_info.json +189 -0
- cdr_info/8w86_A_B_CD_cdr_info.json +177 -0
- cdr_info/8wfm_A_a_B_cdr_info.json +191 -0
- cdr_info/8wz4_H_L_C_cdr_info.json +167 -0
- cdr_info/8x2l_H_L_B_cdr_info.json +173 -0
- cdr_info/8xi6_D_E_A_cdr_info.json +189 -0
cdr_info/7xic_K_L_B_cdr_info.json
ADDED
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| 1 |
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{
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| 2 |
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"entry_name": "7xic_K_L_B",
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| 3 |
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"heavy_chain_id": "K",
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| 4 |
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"light_chain_id": "L",
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| 5 |
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"chain_mapping": {
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"protenix_to_original": {
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"A": "B",
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"B": "K",
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"C": "L"
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},
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"original_to_protenix": {
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"B": "A",
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"K": "B",
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"L": "C"
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},
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"sequence_order": [
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{
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"protenix_chain": "A",
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"original_chain": "B",
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"seq_len": 1267,
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"entity_type": "proteinChain"
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},
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{
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"protenix_chain": "B",
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"original_chain": "K",
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"seq_len": 129,
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"entity_type": "proteinChain"
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},
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{
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"protenix_chain": "C",
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"original_chain": "L",
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"seq_len": 108,
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"entity_type": "proteinChain"
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}
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]
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},
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"cdr_info": {
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"H_chain": {
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"cdr_indices": [
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],
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"variable_domain_start_res_id": 1,
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"cdr1": {
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"indices": [
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},
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"cdr2": {
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"indices": [
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},
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"cdr3": {
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"indices": [
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]
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}
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},
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"L_chain": {
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"cdr_indices": [
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],
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"variable_domain_start_res_id": 1,
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"cdr1": {
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"indices": [
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]
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},
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"cdr2": {
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"indices": [
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49,
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]
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},
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"cdr3": {
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| 178 |
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"indices": [
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88,
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89,
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90,
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]
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}
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}
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}
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| 193 |
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}
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cdr_info/8e1m_H_L_C_cdr_info.json
ADDED
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| 1 |
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{
|
| 2 |
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"entry_name": "8e1m_H_L_C",
|
| 3 |
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"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "C",
|
| 8 |
+
"B": "L",
|
| 9 |
+
"C": "H"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"C": "A",
|
| 13 |
+
"L": "B",
|
| 14 |
+
"H": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
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|
| 20 |
+
"seq_len": 431,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
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|
| 26 |
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"seq_len": 238,
|
| 27 |
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|
| 28 |
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|
| 29 |
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{
|
| 30 |
+
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|
| 31 |
+
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|
| 32 |
+
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|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
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|
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|
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|
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|
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|
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|
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|
| 51 |
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|
| 52 |
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|
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|
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|
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|
| 56 |
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|
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
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|
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|
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|
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|
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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"L_chain": {
|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
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|
| 123 |
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|
| 124 |
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|
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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100
|
| 130 |
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|
| 131 |
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"variable_domain_start_res_id": 21,
|
| 132 |
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|
| 133 |
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"indices": [
|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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35,
|
| 147 |
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|
| 148 |
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37
|
| 149 |
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|
| 150 |
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},
|
| 151 |
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"cdr2": {
|
| 152 |
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"indices": [
|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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]
|
| 161 |
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},
|
| 162 |
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"cdr3": {
|
| 163 |
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"indices": [
|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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}
|
| 175 |
+
}
|
| 176 |
+
}
|
| 177 |
+
}
|
cdr_info/8q7o_A__C_cdr_info.json
ADDED
|
@@ -0,0 +1,94 @@
|
|
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|
|
|
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|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8q7o_A__C",
|
| 3 |
+
"heavy_chain_id": "A",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "C"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"A": "A",
|
| 12 |
+
"C": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "A",
|
| 18 |
+
"seq_len": 124,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "C",
|
| 24 |
+
"seq_len": 124,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
+
27,
|
| 35 |
+
28,
|
| 36 |
+
29,
|
| 37 |
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30,
|
| 38 |
+
31,
|
| 39 |
+
51,
|
| 40 |
+
52,
|
| 41 |
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53,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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100,
|
| 48 |
+
101,
|
| 49 |
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102,
|
| 50 |
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103,
|
| 51 |
+
104,
|
| 52 |
+
105,
|
| 53 |
+
106,
|
| 54 |
+
107
|
| 55 |
+
],
|
| 56 |
+
"variable_domain_start_res_id": 4,
|
| 57 |
+
"cdr1": {
|
| 58 |
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"indices": [
|
| 59 |
+
25,
|
| 60 |
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26,
|
| 61 |
+
27,
|
| 62 |
+
28,
|
| 63 |
+
29,
|
| 64 |
+
30,
|
| 65 |
+
31
|
| 66 |
+
]
|
| 67 |
+
},
|
| 68 |
+
"cdr2": {
|
| 69 |
+
"indices": [
|
| 70 |
+
51,
|
| 71 |
+
52,
|
| 72 |
+
53,
|
| 73 |
+
54,
|
| 74 |
+
55
|
| 75 |
+
]
|
| 76 |
+
},
|
| 77 |
+
"cdr3": {
|
| 78 |
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"indices": [
|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
+
107
|
| 90 |
+
]
|
| 91 |
+
}
|
| 92 |
+
}
|
| 93 |
+
}
|
| 94 |
+
}
|
cdr_info/8qz1_C__B_cdr_info.json
ADDED
|
@@ -0,0 +1,108 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
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|
|
|
|
|
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|
|
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|
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|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8qz1_C__B",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "B",
|
| 8 |
+
"B": "C"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"B": "A",
|
| 12 |
+
"C": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "B",
|
| 18 |
+
"seq_len": 282,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "C",
|
| 24 |
+
"seq_len": 136,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
+
27,
|
| 35 |
+
28,
|
| 36 |
+
29,
|
| 37 |
+
30,
|
| 38 |
+
31,
|
| 39 |
+
51,
|
| 40 |
+
52,
|
| 41 |
+
53,
|
| 42 |
+
54,
|
| 43 |
+
55,
|
| 44 |
+
56,
|
| 45 |
+
98,
|
| 46 |
+
99,
|
| 47 |
+
100,
|
| 48 |
+
101,
|
| 49 |
+
102,
|
| 50 |
+
103,
|
| 51 |
+
104,
|
| 52 |
+
105,
|
| 53 |
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106,
|
| 54 |
+
107,
|
| 55 |
+
108,
|
| 56 |
+
109,
|
| 57 |
+
110,
|
| 58 |
+
111,
|
| 59 |
+
112,
|
| 60 |
+
113,
|
| 61 |
+
114
|
| 62 |
+
],
|
| 63 |
+
"variable_domain_start_res_id": 1,
|
| 64 |
+
"cdr1": {
|
| 65 |
+
"indices": [
|
| 66 |
+
25,
|
| 67 |
+
26,
|
| 68 |
+
27,
|
| 69 |
+
28,
|
| 70 |
+
29,
|
| 71 |
+
30,
|
| 72 |
+
31
|
| 73 |
+
]
|
| 74 |
+
},
|
| 75 |
+
"cdr2": {
|
| 76 |
+
"indices": [
|
| 77 |
+
51,
|
| 78 |
+
52,
|
| 79 |
+
53,
|
| 80 |
+
54,
|
| 81 |
+
55,
|
| 82 |
+
56
|
| 83 |
+
]
|
| 84 |
+
},
|
| 85 |
+
"cdr3": {
|
| 86 |
+
"indices": [
|
| 87 |
+
98,
|
| 88 |
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|
| 89 |
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100,
|
| 90 |
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101,
|
| 91 |
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102,
|
| 92 |
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103,
|
| 93 |
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104,
|
| 94 |
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105,
|
| 95 |
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106,
|
| 96 |
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107,
|
| 97 |
+
108,
|
| 98 |
+
109,
|
| 99 |
+
110,
|
| 100 |
+
111,
|
| 101 |
+
112,
|
| 102 |
+
113,
|
| 103 |
+
114
|
| 104 |
+
]
|
| 105 |
+
}
|
| 106 |
+
}
|
| 107 |
+
}
|
| 108 |
+
}
|
cdr_info/8qz3_C__B_cdr_info.json
ADDED
|
@@ -0,0 +1,110 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8qz3_C__B",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "B",
|
| 8 |
+
"B": "C"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"B": "A",
|
| 12 |
+
"C": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
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{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "B",
|
| 18 |
+
"seq_len": 274,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
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},
|
| 21 |
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{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "C",
|
| 24 |
+
"seq_len": 137,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
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|
| 32 |
+
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|
| 33 |
+
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
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|
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
+
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|
| 62 |
+
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|
| 63 |
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|
| 64 |
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"variable_domain_start_res_id": 1,
|
| 65 |
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|
| 66 |
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"indices": [
|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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},
|
| 76 |
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"cdr2": {
|
| 77 |
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"indices": [
|
| 78 |
+
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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]
|
| 85 |
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},
|
| 86 |
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"cdr3": {
|
| 87 |
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"indices": [
|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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]
|
| 107 |
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}
|
| 108 |
+
}
|
| 109 |
+
}
|
| 110 |
+
}
|
cdr_info/8qz7_B__A_cdr_info.json
ADDED
|
@@ -0,0 +1,108 @@
|
|
|
|
|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8qz7_B__A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"A": "A",
|
| 12 |
+
"B": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "A",
|
| 18 |
+
"seq_len": 357,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "B",
|
| 24 |
+
"seq_len": 136,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
+
27,
|
| 35 |
+
28,
|
| 36 |
+
29,
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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103,
|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
+
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|
| 60 |
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|
| 61 |
+
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|
| 62 |
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|
| 63 |
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"variable_domain_start_res_id": 1,
|
| 64 |
+
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|
| 65 |
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"indices": [
|
| 66 |
+
25,
|
| 67 |
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|
| 68 |
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|
| 69 |
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28,
|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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]
|
| 74 |
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},
|
| 75 |
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"cdr2": {
|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
+
54,
|
| 81 |
+
55,
|
| 82 |
+
56
|
| 83 |
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]
|
| 84 |
+
},
|
| 85 |
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"cdr3": {
|
| 86 |
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"indices": [
|
| 87 |
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98,
|
| 88 |
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|
| 89 |
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|
| 90 |
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101,
|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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108,
|
| 98 |
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|
| 99 |
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110,
|
| 100 |
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111,
|
| 101 |
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112,
|
| 102 |
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113,
|
| 103 |
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114
|
| 104 |
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|
| 105 |
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}
|
| 106 |
+
}
|
| 107 |
+
}
|
| 108 |
+
}
|
cdr_info/8r4b_B__A_cdr_info.json
ADDED
|
@@ -0,0 +1,104 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
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|
|
|
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|
|
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|
|
|
|
|
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|
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|
|
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|
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|
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|
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|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
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|
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|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8r4b_B__A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"A": "A",
|
| 12 |
+
"B": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "A",
|
| 18 |
+
"seq_len": 1107,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "B",
|
| 24 |
+
"seq_len": 137,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
+
27,
|
| 35 |
+
28,
|
| 36 |
+
29,
|
| 37 |
+
30,
|
| 38 |
+
31,
|
| 39 |
+
51,
|
| 40 |
+
52,
|
| 41 |
+
53,
|
| 42 |
+
54,
|
| 43 |
+
55,
|
| 44 |
+
56,
|
| 45 |
+
101,
|
| 46 |
+
102,
|
| 47 |
+
103,
|
| 48 |
+
104,
|
| 49 |
+
105,
|
| 50 |
+
106,
|
| 51 |
+
107,
|
| 52 |
+
108,
|
| 53 |
+
109,
|
| 54 |
+
110,
|
| 55 |
+
111,
|
| 56 |
+
112,
|
| 57 |
+
113,
|
| 58 |
+
114,
|
| 59 |
+
115
|
| 60 |
+
],
|
| 61 |
+
"variable_domain_start_res_id": 1,
|
| 62 |
+
"cdr1": {
|
| 63 |
+
"indices": [
|
| 64 |
+
25,
|
| 65 |
+
26,
|
| 66 |
+
27,
|
| 67 |
+
28,
|
| 68 |
+
29,
|
| 69 |
+
30,
|
| 70 |
+
31
|
| 71 |
+
]
|
| 72 |
+
},
|
| 73 |
+
"cdr2": {
|
| 74 |
+
"indices": [
|
| 75 |
+
51,
|
| 76 |
+
52,
|
| 77 |
+
53,
|
| 78 |
+
54,
|
| 79 |
+
55,
|
| 80 |
+
56
|
| 81 |
+
]
|
| 82 |
+
},
|
| 83 |
+
"cdr3": {
|
| 84 |
+
"indices": [
|
| 85 |
+
101,
|
| 86 |
+
102,
|
| 87 |
+
103,
|
| 88 |
+
104,
|
| 89 |
+
105,
|
| 90 |
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106,
|
| 91 |
+
107,
|
| 92 |
+
108,
|
| 93 |
+
109,
|
| 94 |
+
110,
|
| 95 |
+
111,
|
| 96 |
+
112,
|
| 97 |
+
113,
|
| 98 |
+
114,
|
| 99 |
+
115
|
| 100 |
+
]
|
| 101 |
+
}
|
| 102 |
+
}
|
| 103 |
+
}
|
| 104 |
+
}
|
cdr_info/8rek_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,173 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8rek_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 469,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 220,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 213,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
+
27,
|
| 43 |
+
28,
|
| 44 |
+
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|
| 45 |
+
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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105,
|
| 61 |
+
106,
|
| 62 |
+
107,
|
| 63 |
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108
|
| 64 |
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],
|
| 65 |
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"variable_domain_start_res_id": 1,
|
| 66 |
+
"cdr1": {
|
| 67 |
+
"indices": [
|
| 68 |
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25,
|
| 69 |
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26,
|
| 70 |
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27,
|
| 71 |
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|
| 72 |
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29,
|
| 73 |
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|
| 74 |
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31
|
| 75 |
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|
| 76 |
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},
|
| 77 |
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"cdr2": {
|
| 78 |
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"indices": [
|
| 79 |
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51,
|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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55,
|
| 84 |
+
56
|
| 85 |
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]
|
| 86 |
+
},
|
| 87 |
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"cdr3": {
|
| 88 |
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|
| 89 |
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98,
|
| 90 |
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|
| 91 |
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100,
|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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106,
|
| 98 |
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107,
|
| 99 |
+
108
|
| 100 |
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]
|
| 101 |
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}
|
| 102 |
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},
|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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27,
|
| 110 |
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|
| 111 |
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29,
|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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95
|
| 131 |
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|
| 132 |
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"variable_domain_start_res_id": 1,
|
| 133 |
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|
| 134 |
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|
| 135 |
+
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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28,
|
| 141 |
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29,
|
| 142 |
+
30,
|
| 143 |
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|
| 144 |
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32
|
| 145 |
+
]
|
| 146 |
+
},
|
| 147 |
+
"cdr2": {
|
| 148 |
+
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|
| 149 |
+
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|
| 150 |
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|
| 151 |
+
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|
| 152 |
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|
| 153 |
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52,
|
| 154 |
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|
| 155 |
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|
| 156 |
+
]
|
| 157 |
+
},
|
| 158 |
+
"cdr3": {
|
| 159 |
+
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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94,
|
| 168 |
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95
|
| 169 |
+
]
|
| 170 |
+
}
|
| 171 |
+
}
|
| 172 |
+
}
|
| 173 |
+
}
|
cdr_info/8rh0_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,179 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8rh0_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 906,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 452,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 212,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
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|
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|
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|
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|
| 48 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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"variable_domain_start_res_id": 1,
|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
+
29,
|
| 75 |
+
30,
|
| 76 |
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|
| 77 |
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|
| 78 |
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},
|
| 79 |
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"cdr2": {
|
| 80 |
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|
| 81 |
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51,
|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
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|
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|
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|
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|
| 99 |
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|
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|
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|
| 102 |
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|
| 103 |
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110
|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 133 |
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|
| 134 |
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|
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
+
22,
|
| 141 |
+
23,
|
| 142 |
+
24,
|
| 143 |
+
25,
|
| 144 |
+
26,
|
| 145 |
+
27,
|
| 146 |
+
28,
|
| 147 |
+
29,
|
| 148 |
+
30,
|
| 149 |
+
31,
|
| 150 |
+
32
|
| 151 |
+
]
|
| 152 |
+
},
|
| 153 |
+
"cdr2": {
|
| 154 |
+
"indices": [
|
| 155 |
+
48,
|
| 156 |
+
49,
|
| 157 |
+
50,
|
| 158 |
+
51,
|
| 159 |
+
52,
|
| 160 |
+
53,
|
| 161 |
+
54
|
| 162 |
+
]
|
| 163 |
+
},
|
| 164 |
+
"cdr3": {
|
| 165 |
+
"indices": [
|
| 166 |
+
87,
|
| 167 |
+
88,
|
| 168 |
+
89,
|
| 169 |
+
90,
|
| 170 |
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91,
|
| 171 |
+
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|
| 172 |
+
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|
| 173 |
+
94,
|
| 174 |
+
95
|
| 175 |
+
]
|
| 176 |
+
}
|
| 177 |
+
}
|
| 178 |
+
}
|
| 179 |
+
}
|
cdr_info/8rvn_H_L_F_cdr_info.json
ADDED
|
@@ -0,0 +1,179 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8rvn_H_L_F",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "F",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"F": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "F",
|
| 20 |
+
"seq_len": 499,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 220,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 212,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
24,
|
| 41 |
+
25,
|
| 42 |
+
26,
|
| 43 |
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27,
|
| 44 |
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|
| 45 |
+
29,
|
| 46 |
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30,
|
| 47 |
+
50,
|
| 48 |
+
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|
| 49 |
+
52,
|
| 50 |
+
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|
| 51 |
+
54,
|
| 52 |
+
94,
|
| 53 |
+
95,
|
| 54 |
+
96,
|
| 55 |
+
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|
| 56 |
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98,
|
| 57 |
+
99,
|
| 58 |
+
100,
|
| 59 |
+
101,
|
| 60 |
+
102,
|
| 61 |
+
103,
|
| 62 |
+
104,
|
| 63 |
+
105,
|
| 64 |
+
106
|
| 65 |
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],
|
| 66 |
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"variable_domain_start_res_id": 1,
|
| 67 |
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"cdr1": {
|
| 68 |
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"indices": [
|
| 69 |
+
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|
| 70 |
+
25,
|
| 71 |
+
26,
|
| 72 |
+
27,
|
| 73 |
+
28,
|
| 74 |
+
29,
|
| 75 |
+
30
|
| 76 |
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]
|
| 77 |
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},
|
| 78 |
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"cdr2": {
|
| 79 |
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"indices": [
|
| 80 |
+
50,
|
| 81 |
+
51,
|
| 82 |
+
52,
|
| 83 |
+
53,
|
| 84 |
+
54
|
| 85 |
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]
|
| 86 |
+
},
|
| 87 |
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"cdr3": {
|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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104,
|
| 100 |
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105,
|
| 101 |
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106
|
| 102 |
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]
|
| 103 |
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}
|
| 104 |
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},
|
| 105 |
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"L_chain": {
|
| 106 |
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|
| 107 |
+
23,
|
| 108 |
+
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|
| 109 |
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|
| 110 |
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26,
|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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31,
|
| 116 |
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|
| 117 |
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33,
|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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96,
|
| 134 |
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97
|
| 135 |
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|
| 136 |
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"variable_domain_start_res_id": 1,
|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
+
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|
| 147 |
+
31,
|
| 148 |
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32,
|
| 149 |
+
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|
| 150 |
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|
| 151 |
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},
|
| 152 |
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"cdr2": {
|
| 153 |
+
"indices": [
|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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"cdr3": {
|
| 164 |
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"indices": [
|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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97
|
| 175 |
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|
| 176 |
+
}
|
| 177 |
+
}
|
| 178 |
+
}
|
| 179 |
+
}
|
cdr_info/8rz2_B_C_A_cdr_info.json
ADDED
|
@@ -0,0 +1,183 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8rz2_B_C_A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": "C",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "C"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"B": "B",
|
| 14 |
+
"C": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
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|
| 20 |
+
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|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "B",
|
| 26 |
+
"seq_len": 256,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "C",
|
| 32 |
+
"seq_len": 235,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
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|
| 50 |
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|
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|
| 52 |
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|
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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107,
|
| 63 |
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|
| 64 |
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],
|
| 65 |
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"variable_domain_start_res_id": 20,
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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26,
|
| 70 |
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|
| 71 |
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28,
|
| 72 |
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29,
|
| 73 |
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30,
|
| 74 |
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31
|
| 75 |
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]
|
| 76 |
+
},
|
| 77 |
+
"cdr2": {
|
| 78 |
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| 182 |
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|
| 183 |
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|
cdr_info/8s0l_B__A_cdr_info.json
ADDED
|
@@ -0,0 +1,112 @@
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| 1 |
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{
|
| 2 |
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|
| 3 |
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| 4 |
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| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
| 13 |
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|
| 14 |
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|
| 15 |
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{
|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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{
|
| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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| 31 |
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| 32 |
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| 78 |
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| 87 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
cdr_info/8s0n_B__A_cdr_info.json
ADDED
|
@@ -0,0 +1,112 @@
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| 1 |
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{
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| 2 |
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| 3 |
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|
| 4 |
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| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
| 13 |
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|
| 14 |
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|
| 15 |
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{
|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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| 22 |
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|
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
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|
| 29 |
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|
| 30 |
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| 78 |
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|
| 87 |
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|
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|
| 110 |
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|
| 111 |
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|
| 112 |
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}
|
cdr_info/8s5w_B__A_cdr_info.json
ADDED
|
@@ -0,0 +1,102 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8s5w_B__A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "B",
|
| 8 |
+
"B": "A"
|
| 9 |
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},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"B": "A",
|
| 12 |
+
"A": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "B",
|
| 18 |
+
"seq_len": 140,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "A",
|
| 24 |
+
"seq_len": 535,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
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"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
+
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|
| 57 |
+
110,
|
| 58 |
+
111
|
| 59 |
+
],
|
| 60 |
+
"variable_domain_start_res_id": 1,
|
| 61 |
+
"cdr1": {
|
| 62 |
+
"indices": [
|
| 63 |
+
25,
|
| 64 |
+
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|
| 65 |
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|
| 66 |
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|
| 67 |
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29,
|
| 68 |
+
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|
| 69 |
+
31
|
| 70 |
+
]
|
| 71 |
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},
|
| 72 |
+
"cdr2": {
|
| 73 |
+
"indices": [
|
| 74 |
+
51,
|
| 75 |
+
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
+
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|
| 80 |
+
]
|
| 81 |
+
},
|
| 82 |
+
"cdr3": {
|
| 83 |
+
"indices": [
|
| 84 |
+
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
+
]
|
| 99 |
+
}
|
| 100 |
+
}
|
| 101 |
+
}
|
| 102 |
+
}
|
cdr_info/8sgj_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,183 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
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|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
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|
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|
|
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|
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|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8sgj_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "L",
|
| 9 |
+
"C": "H"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"L": "B",
|
| 14 |
+
"H": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 982,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "L",
|
| 26 |
+
"seq_len": 202,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "H",
|
| 32 |
+
"seq_len": 249,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
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26,
|
| 42 |
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27,
|
| 43 |
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28,
|
| 44 |
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29,
|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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55,
|
| 52 |
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56,
|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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102,
|
| 58 |
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103,
|
| 59 |
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104,
|
| 60 |
+
105,
|
| 61 |
+
106,
|
| 62 |
+
107,
|
| 63 |
+
108,
|
| 64 |
+
109
|
| 65 |
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],
|
| 66 |
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"variable_domain_start_res_id": 1,
|
| 67 |
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"cdr1": {
|
| 68 |
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"indices": [
|
| 69 |
+
25,
|
| 70 |
+
26,
|
| 71 |
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27,
|
| 72 |
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28,
|
| 73 |
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29,
|
| 74 |
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30,
|
| 75 |
+
31
|
| 76 |
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]
|
| 77 |
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},
|
| 78 |
+
"cdr2": {
|
| 79 |
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"indices": [
|
| 80 |
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51,
|
| 81 |
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52,
|
| 82 |
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53,
|
| 83 |
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54,
|
| 84 |
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55,
|
| 85 |
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56
|
| 86 |
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]
|
| 87 |
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},
|
| 88 |
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"cdr3": {
|
| 89 |
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"indices": [
|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
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|
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|
| 98 |
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|
| 99 |
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|
| 100 |
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108,
|
| 101 |
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109
|
| 102 |
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|
| 103 |
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}
|
| 104 |
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},
|
| 105 |
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"L_chain": {
|
| 106 |
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"cdr_indices": [
|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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96,
|
| 135 |
+
97,
|
| 136 |
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98
|
| 137 |
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],
|
| 138 |
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"variable_domain_start_res_id": 1,
|
| 139 |
+
"cdr1": {
|
| 140 |
+
"indices": [
|
| 141 |
+
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
+
30,
|
| 150 |
+
31,
|
| 151 |
+
32,
|
| 152 |
+
33,
|
| 153 |
+
34,
|
| 154 |
+
35
|
| 155 |
+
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|
| 156 |
+
},
|
| 157 |
+
"cdr2": {
|
| 158 |
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"indices": [
|
| 159 |
+
51,
|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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56,
|
| 165 |
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|
| 166 |
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|
| 167 |
+
},
|
| 168 |
+
"cdr3": {
|
| 169 |
+
"indices": [
|
| 170 |
+
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|
| 171 |
+
91,
|
| 172 |
+
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|
| 173 |
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93,
|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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97,
|
| 178 |
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98
|
| 179 |
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]
|
| 180 |
+
}
|
| 181 |
+
}
|
| 182 |
+
}
|
| 183 |
+
}
|
cdr_info/8sit_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,195 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
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|
|
|
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|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8sit_H_L_A",
|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
| 13 |
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"H": "B",
|
| 14 |
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"L": "C"
|
| 15 |
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|
| 16 |
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|
| 17 |
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{
|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
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|
| 29 |
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{
|
| 30 |
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|
| 31 |
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|
| 32 |
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"seq_len": 214,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
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|
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|
| 70 |
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|
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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| 77 |
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|
| 83 |
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|
| 84 |
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| 85 |
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|
| 86 |
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|
| 87 |
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|
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| 116 |
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| 117 |
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|
| 118 |
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| 119 |
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| 121 |
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|
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|
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
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|
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|
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|
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
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|
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|
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|
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|
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
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|
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|
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|
| 191 |
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|
| 192 |
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|
| 193 |
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}
|
| 194 |
+
}
|
| 195 |
+
}
|
cdr_info/8smn_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
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|
|
|
|
|
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|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
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|
|
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|
|
|
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|
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|
|
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|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8smn_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 601,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 234,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 215,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
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|
| 40 |
+
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
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|
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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109,
|
| 65 |
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110,
|
| 66 |
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111
|
| 67 |
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],
|
| 68 |
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"variable_domain_start_res_id": 4,
|
| 69 |
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"cdr1": {
|
| 70 |
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"indices": [
|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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},
|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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54,
|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 105 |
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|
| 106 |
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|
| 107 |
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}
|
| 108 |
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},
|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
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|
| 126 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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"variable_domain_start_res_id": 2,
|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
+
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
+
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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96
|
| 177 |
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|
| 178 |
+
}
|
| 179 |
+
}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8sxp_H_L_C_cdr_info.json
ADDED
|
@@ -0,0 +1,189 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8sxp_H_L_C",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "L",
|
| 8 |
+
"B": "C",
|
| 9 |
+
"C": "H"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"L": "A",
|
| 13 |
+
"C": "B",
|
| 14 |
+
"H": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "L",
|
| 20 |
+
"seq_len": 212,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "C",
|
| 26 |
+
"seq_len": 68,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "H",
|
| 32 |
+
"seq_len": 228,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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101,
|
| 57 |
+
102,
|
| 58 |
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103,
|
| 59 |
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104,
|
| 60 |
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105,
|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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110,
|
| 66 |
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111,
|
| 67 |
+
112,
|
| 68 |
+
113,
|
| 69 |
+
114,
|
| 70 |
+
115
|
| 71 |
+
],
|
| 72 |
+
"variable_domain_start_res_id": 1,
|
| 73 |
+
"cdr1": {
|
| 74 |
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"indices": [
|
| 75 |
+
25,
|
| 76 |
+
26,
|
| 77 |
+
27,
|
| 78 |
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28,
|
| 79 |
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29,
|
| 80 |
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30,
|
| 81 |
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31
|
| 82 |
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]
|
| 83 |
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},
|
| 84 |
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"cdr2": {
|
| 85 |
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"indices": [
|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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56
|
| 92 |
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|
| 93 |
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|
| 94 |
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"cdr3": {
|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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108,
|
| 107 |
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109,
|
| 108 |
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|
| 109 |
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111,
|
| 110 |
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|
| 111 |
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113,
|
| 112 |
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114,
|
| 113 |
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115
|
| 114 |
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]
|
| 115 |
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}
|
| 116 |
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},
|
| 117 |
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"L_chain": {
|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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96
|
| 146 |
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|
| 147 |
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"variable_domain_start_res_id": 1,
|
| 148 |
+
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|
| 149 |
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|
| 150 |
+
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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28,
|
| 156 |
+
29,
|
| 157 |
+
30,
|
| 158 |
+
31,
|
| 159 |
+
32,
|
| 160 |
+
33
|
| 161 |
+
]
|
| 162 |
+
},
|
| 163 |
+
"cdr2": {
|
| 164 |
+
"indices": [
|
| 165 |
+
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|
| 166 |
+
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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55
|
| 172 |
+
]
|
| 173 |
+
},
|
| 174 |
+
"cdr3": {
|
| 175 |
+
"indices": [
|
| 176 |
+
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|
| 177 |
+
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
+
95,
|
| 184 |
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96
|
| 185 |
+
]
|
| 186 |
+
}
|
| 187 |
+
}
|
| 188 |
+
}
|
| 189 |
+
}
|
cdr_info/8t06_C_D_A_cdr_info.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8t06_C_D_A",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": "D",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "C",
|
| 9 |
+
"C": "D"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"C": "B",
|
| 14 |
+
"D": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 221,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "C",
|
| 26 |
+
"seq_len": 120,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "D",
|
| 32 |
+
"seq_len": 107,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
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|
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|
| 48 |
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|
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|
| 50 |
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|
| 51 |
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|
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|
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|
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|
| 55 |
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|
| 56 |
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|
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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107,
|
| 63 |
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108
|
| 64 |
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|
| 65 |
+
"variable_domain_start_res_id": 1,
|
| 66 |
+
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|
| 67 |
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|
| 68 |
+
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|
| 69 |
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26,
|
| 70 |
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|
| 71 |
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28,
|
| 72 |
+
29,
|
| 73 |
+
30,
|
| 74 |
+
31,
|
| 75 |
+
32,
|
| 76 |
+
33
|
| 77 |
+
]
|
| 78 |
+
},
|
| 79 |
+
"cdr2": {
|
| 80 |
+
"indices": [
|
| 81 |
+
53,
|
| 82 |
+
54,
|
| 83 |
+
55,
|
| 84 |
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56,
|
| 85 |
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57
|
| 86 |
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]
|
| 87 |
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|
| 88 |
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"cdr3": {
|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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108
|
| 100 |
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|
| 101 |
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}
|
| 102 |
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},
|
| 103 |
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"L_chain": {
|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
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|
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
+
95,
|
| 131 |
+
96
|
| 132 |
+
],
|
| 133 |
+
"variable_domain_start_res_id": 1,
|
| 134 |
+
"cdr1": {
|
| 135 |
+
"indices": [
|
| 136 |
+
23,
|
| 137 |
+
24,
|
| 138 |
+
25,
|
| 139 |
+
26,
|
| 140 |
+
27,
|
| 141 |
+
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|
| 142 |
+
29,
|
| 143 |
+
30,
|
| 144 |
+
31,
|
| 145 |
+
32,
|
| 146 |
+
33
|
| 147 |
+
]
|
| 148 |
+
},
|
| 149 |
+
"cdr2": {
|
| 150 |
+
"indices": [
|
| 151 |
+
49,
|
| 152 |
+
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|
| 153 |
+
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|
| 154 |
+
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|
| 155 |
+
53,
|
| 156 |
+
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|
| 157 |
+
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|
| 158 |
+
]
|
| 159 |
+
},
|
| 160 |
+
"cdr3": {
|
| 161 |
+
"indices": [
|
| 162 |
+
88,
|
| 163 |
+
89,
|
| 164 |
+
90,
|
| 165 |
+
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
+
96
|
| 171 |
+
]
|
| 172 |
+
}
|
| 173 |
+
}
|
| 174 |
+
}
|
| 175 |
+
}
|
cdr_info/8t9b_C_G_L_cdr_info.json
ADDED
|
@@ -0,0 +1,199 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8t9b_C_G_L",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": "G",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "C",
|
| 8 |
+
"B": "G",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"C": "A",
|
| 13 |
+
"G": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "C",
|
| 20 |
+
"seq_len": 237,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "G",
|
| 26 |
+
"seq_len": 214,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 98,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
+
27,
|
| 43 |
+
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|
| 44 |
+
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
+
56,
|
| 53 |
+
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|
| 54 |
+
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|
| 55 |
+
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|
| 56 |
+
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|
| 57 |
+
102,
|
| 58 |
+
103,
|
| 59 |
+
104,
|
| 60 |
+
105,
|
| 61 |
+
106,
|
| 62 |
+
107,
|
| 63 |
+
108,
|
| 64 |
+
109,
|
| 65 |
+
110,
|
| 66 |
+
111,
|
| 67 |
+
112,
|
| 68 |
+
113,
|
| 69 |
+
114,
|
| 70 |
+
115,
|
| 71 |
+
116,
|
| 72 |
+
117
|
| 73 |
+
],
|
| 74 |
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"variable_domain_start_res_id": 1,
|
| 75 |
+
"cdr1": {
|
| 76 |
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"indices": [
|
| 77 |
+
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|
| 78 |
+
26,
|
| 79 |
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27,
|
| 80 |
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|
| 81 |
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29,
|
| 82 |
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30,
|
| 83 |
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31
|
| 84 |
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]
|
| 85 |
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},
|
| 86 |
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"cdr2": {
|
| 87 |
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"indices": [
|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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},
|
| 96 |
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"cdr3": {
|
| 97 |
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"indices": [
|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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113,
|
| 114 |
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114,
|
| 115 |
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115,
|
| 116 |
+
116,
|
| 117 |
+
117
|
| 118 |
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]
|
| 119 |
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}
|
| 120 |
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},
|
| 121 |
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"L_chain": {
|
| 122 |
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"cdr_indices": [
|
| 123 |
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|
| 124 |
+
23,
|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
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|
| 141 |
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|
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|
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|
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|
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|
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|
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|
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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"variable_domain_start_res_id": 1,
|
| 155 |
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|
| 156 |
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|
| 157 |
+
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
+
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|
| 165 |
+
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|
| 166 |
+
31,
|
| 167 |
+
32
|
| 168 |
+
]
|
| 169 |
+
},
|
| 170 |
+
"cdr2": {
|
| 171 |
+
"indices": [
|
| 172 |
+
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|
| 173 |
+
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|
| 174 |
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|
| 175 |
+
51,
|
| 176 |
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|
| 177 |
+
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|
| 178 |
+
54
|
| 179 |
+
]
|
| 180 |
+
},
|
| 181 |
+
"cdr3": {
|
| 182 |
+
"indices": [
|
| 183 |
+
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|
| 184 |
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88,
|
| 185 |
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|
| 186 |
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|
| 187 |
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|
| 188 |
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|
| 189 |
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|
| 190 |
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|
| 191 |
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|
| 192 |
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|
| 193 |
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|
| 194 |
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98
|
| 195 |
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|
| 196 |
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|
| 197 |
+
}
|
| 198 |
+
}
|
| 199 |
+
}
|
cdr_info/8tbb_H_L_D_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tbb_H_L_D",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "D",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"D": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "D",
|
| 20 |
+
"seq_len": 110,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 226,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 214,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
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27,
|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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"variable_domain_start_res_id": 1,
|
| 69 |
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|
| 70 |
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"indices": [
|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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| 87 |
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| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
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|
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|
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
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| 120 |
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|
| 122 |
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|
| 123 |
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|
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|
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|
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
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|
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|
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|
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|
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|
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|
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|
| 150 |
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|
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
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|
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|
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|
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|
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|
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|
| 178 |
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|
| 179 |
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}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8tco_F_G_C_cdr_info.json
ADDED
|
@@ -0,0 +1,193 @@
|
|
|
|
|
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|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
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|
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|
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|
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|
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|
|
|
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|
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|
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|
|
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|
|
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|
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|
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|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tco_F_G_C",
|
| 3 |
+
"heavy_chain_id": "F",
|
| 4 |
+
"light_chain_id": "G",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "C",
|
| 8 |
+
"B": "F",
|
| 9 |
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"C": "G"
|
| 10 |
+
},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
+
"C": "A",
|
| 13 |
+
"F": "B",
|
| 14 |
+
"G": "C"
|
| 15 |
+
},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
"original_chain": "C",
|
| 20 |
+
"seq_len": 466,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "F",
|
| 26 |
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"seq_len": 229,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "G",
|
| 32 |
+
"seq_len": 234,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
+
]
|
| 36 |
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},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
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|
| 48 |
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|
| 49 |
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|
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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113,
|
| 69 |
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114,
|
| 70 |
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115,
|
| 71 |
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116
|
| 72 |
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],
|
| 73 |
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"variable_domain_start_res_id": 1,
|
| 74 |
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"cdr1": {
|
| 75 |
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"indices": [
|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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},
|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
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|
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|
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|
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|
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|
| 106 |
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|
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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114,
|
| 114 |
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115,
|
| 115 |
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116
|
| 116 |
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|
| 117 |
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}
|
| 118 |
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},
|
| 119 |
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"L_chain": {
|
| 120 |
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|
| 121 |
+
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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94,
|
| 147 |
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|
| 148 |
+
96
|
| 149 |
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|
| 150 |
+
"variable_domain_start_res_id": 21,
|
| 151 |
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|
| 152 |
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|
| 153 |
+
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
+
29,
|
| 161 |
+
30,
|
| 162 |
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31,
|
| 163 |
+
32
|
| 164 |
+
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|
| 165 |
+
},
|
| 166 |
+
"cdr2": {
|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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51,
|
| 172 |
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52,
|
| 173 |
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53,
|
| 174 |
+
54
|
| 175 |
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|
| 176 |
+
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|
| 177 |
+
"cdr3": {
|
| 178 |
+
"indices": [
|
| 179 |
+
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|
| 180 |
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88,
|
| 181 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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|
| 185 |
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|
| 186 |
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|
| 187 |
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|
| 188 |
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96
|
| 189 |
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|
| 190 |
+
}
|
| 191 |
+
}
|
| 192 |
+
}
|
| 193 |
+
}
|
cdr_info/8tfh_H_L_B_cdr_info.json
ADDED
|
@@ -0,0 +1,177 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
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|
|
|
|
|
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|
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|
|
|
|
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|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tfh_H_L_B",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
+
"A": "B",
|
| 8 |
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"B": "H",
|
| 9 |
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"C": "L"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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|
| 13 |
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"H": "B",
|
| 14 |
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"L": "C"
|
| 15 |
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},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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"original_chain": "B",
|
| 20 |
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"seq_len": 262,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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"protenix_chain": "B",
|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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|
| 32 |
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"seq_len": 210,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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"variable_domain_start_res_id": 1,
|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
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|
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|
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
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|
| 121 |
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|
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|
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|
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|
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|
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|
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|
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
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|
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|
| 146 |
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|
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
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|
| 170 |
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|
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
+
}
|
| 176 |
+
}
|
| 177 |
+
}
|
cdr_info/8tl3_G_H_AB_cdr_info.json
ADDED
|
@@ -0,0 +1,197 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tl3_G_H_AB",
|
| 3 |
+
"heavy_chain_id": "G",
|
| 4 |
+
"light_chain_id": "H",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "G",
|
| 10 |
+
"D": "H"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"A": "A",
|
| 14 |
+
"B": "B",
|
| 15 |
+
"G": "C",
|
| 16 |
+
"H": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
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{
|
| 20 |
+
"protenix_chain": "A",
|
| 21 |
+
"original_chain": "A",
|
| 22 |
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"seq_len": 481,
|
| 23 |
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"entity_type": "proteinChain"
|
| 24 |
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|
| 25 |
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{
|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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"entity_type": "proteinChain"
|
| 30 |
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|
| 31 |
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{
|
| 32 |
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"protenix_chain": "C",
|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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},
|
| 37 |
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{
|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
+
"entity_type": "proteinChain"
|
| 42 |
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}
|
| 43 |
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]
|
| 44 |
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},
|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
+
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
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|
| 54 |
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|
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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112,
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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"variable_domain_start_res_id": 1,
|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
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|
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|
| 98 |
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|
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
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|
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|
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
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|
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|
| 131 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
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|
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|
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|
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|
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|
| 164 |
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|
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
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|
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|
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|
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|
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|
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|
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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88,
|
| 185 |
+
89,
|
| 186 |
+
90,
|
| 187 |
+
91,
|
| 188 |
+
92,
|
| 189 |
+
93,
|
| 190 |
+
94,
|
| 191 |
+
95,
|
| 192 |
+
96
|
| 193 |
+
]
|
| 194 |
+
}
|
| 195 |
+
}
|
| 196 |
+
}
|
| 197 |
+
}
|
cdr_info/8tnn_H_G_C_cdr_info.json
ADDED
|
@@ -0,0 +1,177 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tnn_H_G_C",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "G",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "C",
|
| 8 |
+
"B": "G",
|
| 9 |
+
"C": "H"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"C": "A",
|
| 13 |
+
"G": "B",
|
| 14 |
+
"H": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "C",
|
| 20 |
+
"seq_len": 191,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "G",
|
| 26 |
+
"seq_len": 213,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "H",
|
| 32 |
+
"seq_len": 234,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
24,
|
| 41 |
+
25,
|
| 42 |
+
26,
|
| 43 |
+
27,
|
| 44 |
+
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|
| 45 |
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29,
|
| 46 |
+
30,
|
| 47 |
+
31,
|
| 48 |
+
51,
|
| 49 |
+
52,
|
| 50 |
+
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|
| 51 |
+
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|
| 52 |
+
55,
|
| 53 |
+
56,
|
| 54 |
+
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|
| 55 |
+
99,
|
| 56 |
+
100,
|
| 57 |
+
101,
|
| 58 |
+
102,
|
| 59 |
+
103,
|
| 60 |
+
104,
|
| 61 |
+
105,
|
| 62 |
+
106,
|
| 63 |
+
107,
|
| 64 |
+
108
|
| 65 |
+
],
|
| 66 |
+
"variable_domain_start_res_id": 3,
|
| 67 |
+
"cdr1": {
|
| 68 |
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"indices": [
|
| 69 |
+
24,
|
| 70 |
+
25,
|
| 71 |
+
26,
|
| 72 |
+
27,
|
| 73 |
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28,
|
| 74 |
+
29,
|
| 75 |
+
30,
|
| 76 |
+
31
|
| 77 |
+
]
|
| 78 |
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},
|
| 79 |
+
"cdr2": {
|
| 80 |
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"indices": [
|
| 81 |
+
51,
|
| 82 |
+
52,
|
| 83 |
+
53,
|
| 84 |
+
54,
|
| 85 |
+
55,
|
| 86 |
+
56,
|
| 87 |
+
57
|
| 88 |
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]
|
| 89 |
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},
|
| 90 |
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"cdr3": {
|
| 91 |
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"indices": [
|
| 92 |
+
99,
|
| 93 |
+
100,
|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
+
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|
| 100 |
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|
| 101 |
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108
|
| 102 |
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|
| 103 |
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}
|
| 104 |
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},
|
| 105 |
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"L_chain": {
|
| 106 |
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"cdr_indices": [
|
| 107 |
+
22,
|
| 108 |
+
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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30,
|
| 116 |
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31,
|
| 117 |
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32,
|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
+
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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94,
|
| 133 |
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95
|
| 134 |
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|
| 135 |
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"variable_domain_start_res_id": 2,
|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
+
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|
| 144 |
+
28,
|
| 145 |
+
29,
|
| 146 |
+
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|
| 147 |
+
31,
|
| 148 |
+
32
|
| 149 |
+
]
|
| 150 |
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},
|
| 151 |
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"cdr2": {
|
| 152 |
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"indices": [
|
| 153 |
+
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|
| 154 |
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|
| 155 |
+
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|
| 156 |
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|
| 157 |
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|
| 158 |
+
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
+
"cdr3": {
|
| 163 |
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"indices": [
|
| 164 |
+
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
+
94,
|
| 172 |
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95
|
| 173 |
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]
|
| 174 |
+
}
|
| 175 |
+
}
|
| 176 |
+
}
|
| 177 |
+
}
|
cdr_info/8too_B_A_I_cdr_info.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
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|
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|
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|
|
|
|
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|
|
|
|
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|
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|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8too_B_A_I",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": "A",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "I"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"B": "B",
|
| 14 |
+
"I": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 214,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "B",
|
| 26 |
+
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|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "I",
|
| 32 |
+
"seq_len": 139,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
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|
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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]
|
| 76 |
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},
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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53,
|
| 82 |
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54,
|
| 83 |
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|
| 84 |
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56
|
| 85 |
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|
| 86 |
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},
|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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108
|
| 100 |
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|
| 101 |
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}
|
| 102 |
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},
|
| 103 |
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"L_chain": {
|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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30,
|
| 113 |
+
31,
|
| 114 |
+
32,
|
| 115 |
+
33,
|
| 116 |
+
49,
|
| 117 |
+
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|
| 118 |
+
51,
|
| 119 |
+
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
+
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|
| 130 |
+
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|
| 131 |
+
96
|
| 132 |
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],
|
| 133 |
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"variable_domain_start_res_id": 1,
|
| 134 |
+
"cdr1": {
|
| 135 |
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"indices": [
|
| 136 |
+
23,
|
| 137 |
+
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|
| 138 |
+
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
+
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|
| 143 |
+
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|
| 144 |
+
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|
| 145 |
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|
| 146 |
+
33
|
| 147 |
+
]
|
| 148 |
+
},
|
| 149 |
+
"cdr2": {
|
| 150 |
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"indices": [
|
| 151 |
+
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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},
|
| 160 |
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"cdr3": {
|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
+
}
|
| 174 |
+
}
|
| 175 |
+
}
|
cdr_info/8tp7_D_F_A_cdr_info.json
ADDED
|
@@ -0,0 +1,195 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
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|
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|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tp7_D_F_A",
|
| 3 |
+
"heavy_chain_id": "D",
|
| 4 |
+
"light_chain_id": "F",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "D",
|
| 9 |
+
"C": "F"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"D": "B",
|
| 14 |
+
"F": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 562,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "D",
|
| 26 |
+
"seq_len": 126,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "F",
|
| 32 |
+
"seq_len": 108,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
+
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|
| 43 |
+
28,
|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
+
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
+
105,
|
| 61 |
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106,
|
| 62 |
+
107,
|
| 63 |
+
108,
|
| 64 |
+
109,
|
| 65 |
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110,
|
| 66 |
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111,
|
| 67 |
+
112,
|
| 68 |
+
113,
|
| 69 |
+
114
|
| 70 |
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],
|
| 71 |
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"variable_domain_start_res_id": 1,
|
| 72 |
+
"cdr1": {
|
| 73 |
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"indices": [
|
| 74 |
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|
| 75 |
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26,
|
| 76 |
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27,
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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33
|
| 83 |
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|
| 84 |
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},
|
| 85 |
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"cdr2": {
|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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"cdr3": {
|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
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|
| 105 |
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|
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|
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|
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|
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|
| 110 |
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|
| 111 |
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114
|
| 112 |
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|
| 113 |
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}
|
| 114 |
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},
|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
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|
| 136 |
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|
| 137 |
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|
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|
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|
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|
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|
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|
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|
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
+
"variable_domain_start_res_id": 1,
|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
+
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|
| 165 |
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|
| 166 |
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|
| 167 |
+
},
|
| 168 |
+
"cdr2": {
|
| 169 |
+
"indices": [
|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
+
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|
| 178 |
+
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|
| 179 |
+
"cdr3": {
|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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|
| 185 |
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|
| 186 |
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|
| 187 |
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|
| 188 |
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|
| 189 |
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|
| 190 |
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|
| 191 |
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|
| 192 |
+
}
|
| 193 |
+
}
|
| 194 |
+
}
|
| 195 |
+
}
|
cdr_info/8tq9_H_L_AB_cdr_info.json
ADDED
|
@@ -0,0 +1,185 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tq9_H_L_AB",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "H",
|
| 10 |
+
"D": "L"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"A": "A",
|
| 14 |
+
"B": "B",
|
| 15 |
+
"H": "C",
|
| 16 |
+
"L": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
+
{
|
| 20 |
+
"protenix_chain": "A",
|
| 21 |
+
"original_chain": "A",
|
| 22 |
+
"seq_len": 273,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"protenix_chain": "B",
|
| 27 |
+
"original_chain": "B",
|
| 28 |
+
"seq_len": 101,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
+
},
|
| 31 |
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{
|
| 32 |
+
"protenix_chain": "C",
|
| 33 |
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|
| 34 |
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"seq_len": 218,
|
| 35 |
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"entity_type": "proteinChain"
|
| 36 |
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},
|
| 37 |
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{
|
| 38 |
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|
| 39 |
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|
| 40 |
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"seq_len": 214,
|
| 41 |
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"entity_type": "proteinChain"
|
| 42 |
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}
|
| 43 |
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]
|
| 44 |
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},
|
| 45 |
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"cdr_info": {
|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
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| 60 |
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|
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| 70 |
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|
| 71 |
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|
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
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| 85 |
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| 86 |
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| 87 |
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| 94 |
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|
| 95 |
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| 96 |
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| 97 |
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| 98 |
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|
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|
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|
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
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|
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|
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|
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
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|
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|
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|
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|
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|
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
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|
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|
| 181 |
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|
| 182 |
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|
| 183 |
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}
|
| 184 |
+
}
|
| 185 |
+
}
|
cdr_info/8tr3_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,185 @@
|
|
|
|
|
|
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|
|
|
|
|
|
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|
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|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tr3_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"A": "A",
|
| 13 |
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"H": "B",
|
| 14 |
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"L": "C"
|
| 15 |
+
},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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"original_chain": "A",
|
| 20 |
+
"seq_len": 489,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
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"seq_len": 124,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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"original_chain": "L",
|
| 32 |
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"seq_len": 109,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
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"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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|
| 40 |
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|
| 41 |
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26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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111,
|
| 67 |
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|
| 68 |
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],
|
| 69 |
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"variable_domain_start_res_id": 1,
|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
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|
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|
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
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|
| 116 |
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|
| 117 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
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|
| 146 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
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|
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|
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|
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|
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|
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 181 |
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|
| 182 |
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|
| 183 |
+
}
|
| 184 |
+
}
|
| 185 |
+
}
|
cdr_info/8ts0_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8ts0_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "H",
|
| 8 |
+
"B": "L",
|
| 9 |
+
"C": "A"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"H": "A",
|
| 13 |
+
"L": "B",
|
| 14 |
+
"A": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "H",
|
| 20 |
+
"seq_len": 236,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "L",
|
| 26 |
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"seq_len": 214,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "A",
|
| 32 |
+
"seq_len": 169,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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110
|
| 66 |
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|
| 67 |
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"variable_domain_start_res_id": 1,
|
| 68 |
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|
| 69 |
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"indices": [
|
| 70 |
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25,
|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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110
|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
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|
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|
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|
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|
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|
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|
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|
| 131 |
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|
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
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|
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
+
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
+
}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8tx3_H_L_CD_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tx3_H_L_CD",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "C",
|
| 8 |
+
"B": "D",
|
| 9 |
+
"C": "H",
|
| 10 |
+
"D": "L"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"C": "A",
|
| 14 |
+
"D": "B",
|
| 15 |
+
"H": "C",
|
| 16 |
+
"L": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
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{
|
| 20 |
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"protenix_chain": "A",
|
| 21 |
+
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|
| 22 |
+
"seq_len": 350,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
+
},
|
| 25 |
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{
|
| 26 |
+
"protenix_chain": "B",
|
| 27 |
+
"original_chain": "D",
|
| 28 |
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|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
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},
|
| 31 |
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{
|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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},
|
| 37 |
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{
|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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}
|
| 43 |
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]
|
| 44 |
+
},
|
| 45 |
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"cdr_info": {
|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
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|
| 53 |
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|
| 54 |
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|
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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105,
|
| 69 |
+
106,
|
| 70 |
+
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|
| 71 |
+
],
|
| 72 |
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"variable_domain_start_res_id": 1,
|
| 73 |
+
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
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|
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|
| 100 |
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|
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|
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|
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|
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
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|
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
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|
| 126 |
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|
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|
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|
| 129 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
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|
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|
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|
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|
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|
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|
| 150 |
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|
| 151 |
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|
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
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|
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|
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|
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|
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|
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|
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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}
|
| 181 |
+
}
|
cdr_info/8txt_H_L_EF_cdr_info.json
ADDED
|
@@ -0,0 +1,189 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
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|
|
|
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|
|
|
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|
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|
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|
|
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|
|
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|
|
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|
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|
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|
|
|
|
|
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|
|
|
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|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
|
|
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|
|
|
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|
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|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8txt_H_L_EF",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "E",
|
| 8 |
+
"B": "F",
|
| 9 |
+
"C": "H",
|
| 10 |
+
"D": "L"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"E": "A",
|
| 14 |
+
"F": "B",
|
| 15 |
+
"H": "C",
|
| 16 |
+
"L": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
+
{
|
| 20 |
+
"protenix_chain": "A",
|
| 21 |
+
"original_chain": "E",
|
| 22 |
+
"seq_len": 334,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"protenix_chain": "B",
|
| 27 |
+
"original_chain": "F",
|
| 28 |
+
"seq_len": 177,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"protenix_chain": "C",
|
| 33 |
+
"original_chain": "H",
|
| 34 |
+
"seq_len": 225,
|
| 35 |
+
"entity_type": "proteinChain"
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"protenix_chain": "D",
|
| 39 |
+
"original_chain": "L",
|
| 40 |
+
"seq_len": 214,
|
| 41 |
+
"entity_type": "proteinChain"
|
| 42 |
+
}
|
| 43 |
+
]
|
| 44 |
+
},
|
| 45 |
+
"cdr_info": {
|
| 46 |
+
"H_chain": {
|
| 47 |
+
"cdr_indices": [
|
| 48 |
+
25,
|
| 49 |
+
26,
|
| 50 |
+
27,
|
| 51 |
+
28,
|
| 52 |
+
29,
|
| 53 |
+
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|
| 54 |
+
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|
| 55 |
+
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|
| 56 |
+
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|
| 57 |
+
53,
|
| 58 |
+
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|
| 59 |
+
55,
|
| 60 |
+
56,
|
| 61 |
+
98,
|
| 62 |
+
99,
|
| 63 |
+
100,
|
| 64 |
+
101,
|
| 65 |
+
102,
|
| 66 |
+
103,
|
| 67 |
+
104,
|
| 68 |
+
105,
|
| 69 |
+
106,
|
| 70 |
+
107,
|
| 71 |
+
108,
|
| 72 |
+
109,
|
| 73 |
+
110,
|
| 74 |
+
111
|
| 75 |
+
],
|
| 76 |
+
"variable_domain_start_res_id": 1,
|
| 77 |
+
"cdr1": {
|
| 78 |
+
"indices": [
|
| 79 |
+
25,
|
| 80 |
+
26,
|
| 81 |
+
27,
|
| 82 |
+
28,
|
| 83 |
+
29,
|
| 84 |
+
30,
|
| 85 |
+
31
|
| 86 |
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]
|
| 87 |
+
},
|
| 88 |
+
"cdr2": {
|
| 89 |
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"indices": [
|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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]
|
| 97 |
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},
|
| 98 |
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"cdr3": {
|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
+
109,
|
| 112 |
+
110,
|
| 113 |
+
111
|
| 114 |
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]
|
| 115 |
+
}
|
| 116 |
+
},
|
| 117 |
+
"L_chain": {
|
| 118 |
+
"cdr_indices": [
|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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96
|
| 146 |
+
],
|
| 147 |
+
"variable_domain_start_res_id": 1,
|
| 148 |
+
"cdr1": {
|
| 149 |
+
"indices": [
|
| 150 |
+
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
+
31,
|
| 159 |
+
32,
|
| 160 |
+
33
|
| 161 |
+
]
|
| 162 |
+
},
|
| 163 |
+
"cdr2": {
|
| 164 |
+
"indices": [
|
| 165 |
+
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
+
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|
| 171 |
+
55
|
| 172 |
+
]
|
| 173 |
+
},
|
| 174 |
+
"cdr3": {
|
| 175 |
+
"indices": [
|
| 176 |
+
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|
| 177 |
+
89,
|
| 178 |
+
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|
| 179 |
+
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|
| 180 |
+
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|
| 181 |
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|
| 182 |
+
94,
|
| 183 |
+
95,
|
| 184 |
+
96
|
| 185 |
+
]
|
| 186 |
+
}
|
| 187 |
+
}
|
| 188 |
+
}
|
| 189 |
+
}
|
cdr_info/8ty7_H_L_AB_cdr_info.json
ADDED
|
@@ -0,0 +1,187 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8ty7_H_L_AB",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "H",
|
| 10 |
+
"D": "L"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"A": "A",
|
| 14 |
+
"B": "B",
|
| 15 |
+
"H": "C",
|
| 16 |
+
"L": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
+
{
|
| 20 |
+
"protenix_chain": "A",
|
| 21 |
+
"original_chain": "A",
|
| 22 |
+
"seq_len": 331,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"protenix_chain": "B",
|
| 27 |
+
"original_chain": "B",
|
| 28 |
+
"seq_len": 177,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"protenix_chain": "C",
|
| 33 |
+
"original_chain": "H",
|
| 34 |
+
"seq_len": 225,
|
| 35 |
+
"entity_type": "proteinChain"
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"protenix_chain": "D",
|
| 39 |
+
"original_chain": "L",
|
| 40 |
+
"seq_len": 214,
|
| 41 |
+
"entity_type": "proteinChain"
|
| 42 |
+
}
|
| 43 |
+
]
|
| 44 |
+
},
|
| 45 |
+
"cdr_info": {
|
| 46 |
+
"H_chain": {
|
| 47 |
+
"cdr_indices": [
|
| 48 |
+
25,
|
| 49 |
+
26,
|
| 50 |
+
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|
| 51 |
+
28,
|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
+
99,
|
| 63 |
+
100,
|
| 64 |
+
101,
|
| 65 |
+
102,
|
| 66 |
+
103,
|
| 67 |
+
104,
|
| 68 |
+
105,
|
| 69 |
+
106,
|
| 70 |
+
107,
|
| 71 |
+
108,
|
| 72 |
+
109
|
| 73 |
+
],
|
| 74 |
+
"variable_domain_start_res_id": 2,
|
| 75 |
+
"cdr1": {
|
| 76 |
+
"indices": [
|
| 77 |
+
25,
|
| 78 |
+
26,
|
| 79 |
+
27,
|
| 80 |
+
28,
|
| 81 |
+
29
|
| 82 |
+
]
|
| 83 |
+
},
|
| 84 |
+
"cdr2": {
|
| 85 |
+
"indices": [
|
| 86 |
+
49,
|
| 87 |
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50,
|
| 88 |
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51,
|
| 89 |
+
52,
|
| 90 |
+
53,
|
| 91 |
+
54
|
| 92 |
+
]
|
| 93 |
+
},
|
| 94 |
+
"cdr3": {
|
| 95 |
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|
| 96 |
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|
| 97 |
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|
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|
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|
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|
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|
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|
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|
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|
| 105 |
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|
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|
| 107 |
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|
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|
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
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|
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|
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|
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|
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|
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|
| 129 |
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|
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|
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|
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|
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|
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|
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|
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
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|
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|
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|
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
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|
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| 176 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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|
| 185 |
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}
|
| 186 |
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}
|
| 187 |
+
}
|
cdr_info/8tzu_D__B_cdr_info.json
ADDED
|
@@ -0,0 +1,108 @@
|
|
|
|
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|
|
|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tzu_D__B",
|
| 3 |
+
"heavy_chain_id": "D",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
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"A": "B",
|
| 8 |
+
"B": "D"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"B": "A",
|
| 12 |
+
"D": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "B",
|
| 18 |
+
"seq_len": 275,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "D",
|
| 24 |
+
"seq_len": 128,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
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|
| 47 |
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|
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|
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
+
111,
|
| 59 |
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112,
|
| 60 |
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|
| 61 |
+
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|
| 62 |
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|
| 63 |
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"variable_domain_start_res_id": 1,
|
| 64 |
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|
| 65 |
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|
| 66 |
+
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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},
|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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"cdr3": {
|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
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|
| 98 |
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|
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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114
|
| 104 |
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|
| 105 |
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}
|
| 106 |
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}
|
| 107 |
+
}
|
| 108 |
+
}
|
cdr_info/8u31_C_B_A_cdr_info.json
ADDED
|
@@ -0,0 +1,197 @@
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
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|
|
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|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8u31_C_B_A",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": "B",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "A",
|
| 8 |
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"B": "B",
|
| 9 |
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"C": "C"
|
| 10 |
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},
|
| 11 |
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|
| 12 |
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"A": "A",
|
| 13 |
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"B": "B",
|
| 14 |
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"C": "C"
|
| 15 |
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},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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|
| 32 |
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"seq_len": 229,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
+
},
|
| 37 |
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|
| 38 |
+
"H_chain": {
|
| 39 |
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|
| 40 |
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25,
|
| 41 |
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26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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111,
|
| 67 |
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112,
|
| 68 |
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113,
|
| 69 |
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114,
|
| 70 |
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115
|
| 71 |
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],
|
| 72 |
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"variable_domain_start_res_id": 1,
|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
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|
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|
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|
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|
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|
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|
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|
| 107 |
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|
| 108 |
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110,
|
| 109 |
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111,
|
| 110 |
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112,
|
| 111 |
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113,
|
| 112 |
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114,
|
| 113 |
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115
|
| 114 |
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]
|
| 115 |
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}
|
| 116 |
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},
|
| 117 |
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"L_chain": {
|
| 118 |
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|
| 119 |
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23,
|
| 120 |
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24,
|
| 121 |
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|
| 122 |
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26,
|
| 123 |
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27,
|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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32,
|
| 129 |
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33,
|
| 130 |
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34,
|
| 131 |
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35,
|
| 132 |
+
51,
|
| 133 |
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52,
|
| 134 |
+
53,
|
| 135 |
+
54,
|
| 136 |
+
55,
|
| 137 |
+
56,
|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
+
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|
| 150 |
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|
| 151 |
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"variable_domain_start_res_id": 1,
|
| 152 |
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|
| 153 |
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|
| 154 |
+
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
+
35
|
| 167 |
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|
| 168 |
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},
|
| 169 |
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"cdr2": {
|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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"cdr3": {
|
| 181 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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|
| 185 |
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|
| 186 |
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|
| 187 |
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|
| 188 |
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|
| 189 |
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|
| 190 |
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|
| 191 |
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|
| 192 |
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|
| 193 |
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|
| 194 |
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|
| 195 |
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}
|
| 196 |
+
}
|
| 197 |
+
}
|
cdr_info/8u32_C_B_A_cdr_info.json
ADDED
|
@@ -0,0 +1,197 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8u32_C_B_A",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": "B",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "A",
|
| 8 |
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"B": "B",
|
| 9 |
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"C": "C"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"A": "A",
|
| 13 |
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"B": "B",
|
| 14 |
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"C": "C"
|
| 15 |
+
},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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"original_chain": "A",
|
| 20 |
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"seq_len": 140,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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"protenix_chain": "B",
|
| 25 |
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|
| 26 |
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"seq_len": 218,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
+
"original_chain": "C",
|
| 32 |
+
"seq_len": 229,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
+
]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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113,
|
| 69 |
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114,
|
| 70 |
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115
|
| 71 |
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|
| 72 |
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"variable_domain_start_res_id": 1,
|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
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|
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|
| 95 |
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|
| 96 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
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|
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|
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|
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|
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|
| 125 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
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|
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|
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|
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|
| 159 |
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|
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|
| 161 |
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|
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
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|
| 185 |
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|
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|
| 187 |
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|
| 188 |
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|
| 189 |
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|
| 190 |
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|
| 191 |
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|
| 192 |
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|
| 193 |
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|
| 194 |
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|
| 195 |
+
}
|
| 196 |
+
}
|
| 197 |
+
}
|
cdr_info/8u5l_J_j_A_cdr_info.json
ADDED
|
@@ -0,0 +1,169 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8u5l_J_j_A",
|
| 3 |
+
"heavy_chain_id": "J",
|
| 4 |
+
"light_chain_id": "j",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "J"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"A": "A",
|
| 12 |
+
"J": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "A",
|
| 18 |
+
"seq_len": 269,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "J",
|
| 24 |
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"seq_len": 253,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
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27,
|
| 35 |
+
28,
|
| 36 |
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29,
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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"variable_domain_start_res_id": 1,
|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
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|
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|
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|
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|
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
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|
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|
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|
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|
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|
| 124 |
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|
| 125 |
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|
| 126 |
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"variable_domain_start_res_id": 141,
|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
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|
| 133 |
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|
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|
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|
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|
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
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|
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|
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|
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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}
|
| 168 |
+
}
|
| 169 |
+
}
|
cdr_info/8udz_C_D_B_cdr_info.json
ADDED
|
@@ -0,0 +1,185 @@
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|
|
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|
|
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|
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|
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|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
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|
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|
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|
|
|
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|
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|
|
|
|
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|
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|
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|
|
|
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|
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|
|
|
|
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|
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|
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|
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|
|
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|
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|
| 1 |
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{
|
| 2 |
+
"entry_name": "8udz_C_D_B",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": "D",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "B",
|
| 8 |
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"B": "C",
|
| 9 |
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"C": "D"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"B": "A",
|
| 13 |
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"C": "B",
|
| 14 |
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"D": "C"
|
| 15 |
+
},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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"original_chain": "B",
|
| 20 |
+
"seq_len": 361,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
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"original_chain": "C",
|
| 26 |
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"seq_len": 233,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "D",
|
| 32 |
+
"seq_len": 218,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
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|
| 41 |
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26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
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|
| 47 |
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|
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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107,
|
| 63 |
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108,
|
| 64 |
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|
| 65 |
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],
|
| 66 |
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"variable_domain_start_res_id": 1,
|
| 67 |
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"cdr1": {
|
| 68 |
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"indices": [
|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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},
|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
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|
| 93 |
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|
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|
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|
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|
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|
| 98 |
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|
| 99 |
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|
| 100 |
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108,
|
| 101 |
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109
|
| 102 |
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|
| 103 |
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}
|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
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|
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|
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|
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|
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|
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
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|
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|
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|
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|
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|
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|
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|
| 127 |
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|
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|
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|
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|
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|
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|
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
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|
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|
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
+
32,
|
| 153 |
+
33,
|
| 154 |
+
34
|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
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|
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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56
|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
+
}
|
| 183 |
+
}
|
| 184 |
+
}
|
| 185 |
+
}
|
cdr_info/8urf_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,171 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
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|
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|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8urf_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
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"light_chain_id": "L",
|
| 5 |
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"chain_mapping": {
|
| 6 |
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|
| 7 |
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"A": "L",
|
| 8 |
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"B": "H",
|
| 9 |
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"C": "A"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"L": "A",
|
| 13 |
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"H": "B",
|
| 14 |
+
"A": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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|
| 20 |
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"seq_len": 214,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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"protenix_chain": "B",
|
| 25 |
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"original_chain": "H",
|
| 26 |
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"seq_len": 232,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
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"original_chain": "A",
|
| 32 |
+
"seq_len": 159,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
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| 57 |
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| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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| 68 |
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|
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
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| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
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|
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
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|
| 110 |
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|
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|
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|
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|
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|
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|
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
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|
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|
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|
| 137 |
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|
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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},
|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
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|
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|
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|
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|
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|
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|
| 166 |
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|
| 167 |
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|
| 168 |
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}
|
| 169 |
+
}
|
| 170 |
+
}
|
| 171 |
+
}
|
cdr_info/8uwz_C_D_F_cdr_info.json
ADDED
|
@@ -0,0 +1,177 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
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|
|
|
|
|
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|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8uwz_C_D_F",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": "D",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "C",
|
| 8 |
+
"B": "D",
|
| 9 |
+
"C": "F"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"C": "A",
|
| 13 |
+
"D": "B",
|
| 14 |
+
"F": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "C",
|
| 20 |
+
"seq_len": 228,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "D",
|
| 26 |
+
"seq_len": 212,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "F",
|
| 32 |
+
"seq_len": 121,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
+
]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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106,
|
| 62 |
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107,
|
| 63 |
+
108
|
| 64 |
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],
|
| 65 |
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"variable_domain_start_res_id": 1,
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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26,
|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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},
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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108
|
| 100 |
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|
| 101 |
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|
| 102 |
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},
|
| 103 |
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"L_chain": {
|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
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|
| 121 |
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|
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|
| 123 |
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|
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|
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|
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
+
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|
| 145 |
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|
| 146 |
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|
| 147 |
+
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|
| 148 |
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|
| 149 |
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},
|
| 150 |
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"cdr2": {
|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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96
|
| 173 |
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|
| 174 |
+
}
|
| 175 |
+
}
|
| 176 |
+
}
|
| 177 |
+
}
|
cdr_info/8vun_G_I_C_cdr_info.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8vun_G_I_C",
|
| 3 |
+
"heavy_chain_id": "G",
|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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"A": "C",
|
| 8 |
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"B": "G",
|
| 9 |
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|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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|
| 13 |
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"G": "B",
|
| 14 |
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"I": "C"
|
| 15 |
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},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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|
| 20 |
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"seq_len": 817,
|
| 21 |
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|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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|
| 32 |
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"seq_len": 209,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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|
| 35 |
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|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
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|
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|
| 48 |
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|
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|
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|
| 52 |
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|
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|
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|
| 55 |
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|
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|
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|
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
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|
| 84 |
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|
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
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|
| 108 |
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|
| 109 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
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|
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|
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|
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|
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|
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
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|
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|
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|
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|
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|
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|
| 172 |
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|
| 173 |
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|
| 174 |
+
}
|
| 175 |
+
}
|
cdr_info/8vuq_G_I_A_cdr_info.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
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|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8vuq_G_I_A",
|
| 3 |
+
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|
| 4 |
+
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|
| 5 |
+
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|
| 6 |
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|
| 7 |
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"A": "A",
|
| 8 |
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"B": "G",
|
| 9 |
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"C": "I"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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|
| 13 |
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|
| 14 |
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"I": "C"
|
| 15 |
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|
| 16 |
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|
| 17 |
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{
|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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{
|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
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|
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|
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|
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|
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|
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
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|
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|
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|
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
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|
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|
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|
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| 105 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 135 |
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|
| 136 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 153 |
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| 154 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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}
|
cdr_info/8vww_B_C_A_cdr_info.json
ADDED
|
@@ -0,0 +1,179 @@
|
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8vww_B_C_A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": "C",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "C"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"B": "B",
|
| 14 |
+
"C": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 268,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "B",
|
| 26 |
+
"seq_len": 228,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "C",
|
| 32 |
+
"seq_len": 212,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
+
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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],
|
| 67 |
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"variable_domain_start_res_id": 1,
|
| 68 |
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"cdr1": {
|
| 69 |
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"indices": [
|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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},
|
| 79 |
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"cdr2": {
|
| 80 |
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"indices": [
|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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},
|
| 88 |
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"cdr3": {
|
| 89 |
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|
| 90 |
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|
| 91 |
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|
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|
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|
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|
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|
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|
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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"L_chain": {
|
| 108 |
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|
| 109 |
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|
| 110 |
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|
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|
| 112 |
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|
| 113 |
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|
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|
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
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|
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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"cdr2": {
|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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"cdr3": {
|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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}
|
| 177 |
+
}
|
| 178 |
+
}
|
| 179 |
+
}
|
cdr_info/8vww_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
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|
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|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8vww_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 268,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
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|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 214,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
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"cdr_info": {
|
| 38 |
+
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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},
|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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},
|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
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|
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|
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|
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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}
|
| 102 |
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},
|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
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| 110 |
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|
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|
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|
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|
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|
| 122 |
+
55,
|
| 123 |
+
88,
|
| 124 |
+
89,
|
| 125 |
+
90,
|
| 126 |
+
91,
|
| 127 |
+
92,
|
| 128 |
+
93,
|
| 129 |
+
94,
|
| 130 |
+
95,
|
| 131 |
+
96
|
| 132 |
+
],
|
| 133 |
+
"variable_domain_start_res_id": 1,
|
| 134 |
+
"cdr1": {
|
| 135 |
+
"indices": [
|
| 136 |
+
23,
|
| 137 |
+
24,
|
| 138 |
+
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|
| 139 |
+
26,
|
| 140 |
+
27,
|
| 141 |
+
28,
|
| 142 |
+
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|
| 143 |
+
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|
| 144 |
+
31,
|
| 145 |
+
32,
|
| 146 |
+
33
|
| 147 |
+
]
|
| 148 |
+
},
|
| 149 |
+
"cdr2": {
|
| 150 |
+
"indices": [
|
| 151 |
+
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|
| 152 |
+
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|
| 153 |
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|
| 154 |
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|
| 155 |
+
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|
| 156 |
+
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|
| 157 |
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|
| 158 |
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]
|
| 159 |
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},
|
| 160 |
+
"cdr3": {
|
| 161 |
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"indices": [
|
| 162 |
+
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|
| 163 |
+
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
+
}
|
| 173 |
+
}
|
| 174 |
+
}
|
| 175 |
+
}
|
cdr_info/8w0v_H_L_C_cdr_info.json
ADDED
|
@@ -0,0 +1,189 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8w0v_H_L_C",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "C",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"C": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "C",
|
| 20 |
+
"seq_len": 262,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 237,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 215,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
+
27,
|
| 43 |
+
28,
|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
+
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
+
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|
| 54 |
+
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|
| 55 |
+
100,
|
| 56 |
+
101,
|
| 57 |
+
102,
|
| 58 |
+
103,
|
| 59 |
+
104,
|
| 60 |
+
105,
|
| 61 |
+
106,
|
| 62 |
+
107,
|
| 63 |
+
108,
|
| 64 |
+
109,
|
| 65 |
+
110,
|
| 66 |
+
111,
|
| 67 |
+
112,
|
| 68 |
+
113
|
| 69 |
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],
|
| 70 |
+
"variable_domain_start_res_id": 1,
|
| 71 |
+
"cdr1": {
|
| 72 |
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"indices": [
|
| 73 |
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|
| 74 |
+
26,
|
| 75 |
+
27,
|
| 76 |
+
28,
|
| 77 |
+
29,
|
| 78 |
+
30,
|
| 79 |
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31
|
| 80 |
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]
|
| 81 |
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},
|
| 82 |
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"cdr2": {
|
| 83 |
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"indices": [
|
| 84 |
+
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|
| 85 |
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|
| 86 |
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|
| 87 |
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54,
|
| 88 |
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|
| 89 |
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56
|
| 90 |
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]
|
| 91 |
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},
|
| 92 |
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"cdr3": {
|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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112,
|
| 109 |
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113
|
| 110 |
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|
| 111 |
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}
|
| 112 |
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},
|
| 113 |
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"L_chain": {
|
| 114 |
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|
| 115 |
+
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
+
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|
| 144 |
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],
|
| 145 |
+
"variable_domain_start_res_id": 1,
|
| 146 |
+
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|
| 147 |
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|
| 148 |
+
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
+
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|
| 156 |
+
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|
| 157 |
+
31,
|
| 158 |
+
32,
|
| 159 |
+
33
|
| 160 |
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]
|
| 161 |
+
},
|
| 162 |
+
"cdr2": {
|
| 163 |
+
"indices": [
|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
+
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|
| 170 |
+
55
|
| 171 |
+
]
|
| 172 |
+
},
|
| 173 |
+
"cdr3": {
|
| 174 |
+
"indices": [
|
| 175 |
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|
| 176 |
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89,
|
| 177 |
+
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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97
|
| 185 |
+
]
|
| 186 |
+
}
|
| 187 |
+
}
|
| 188 |
+
}
|
| 189 |
+
}
|
cdr_info/8w86_A_B_CD_cdr_info.json
ADDED
|
@@ -0,0 +1,177 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8w86_A_B_CD",
|
| 3 |
+
"heavy_chain_id": "A",
|
| 4 |
+
"light_chain_id": "B",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "C",
|
| 10 |
+
"D": "D"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"A": "A",
|
| 14 |
+
"B": "B",
|
| 15 |
+
"C": "C",
|
| 16 |
+
"D": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
+
{
|
| 20 |
+
"protenix_chain": "A",
|
| 21 |
+
"original_chain": "A",
|
| 22 |
+
"seq_len": 223,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"protenix_chain": "B",
|
| 27 |
+
"original_chain": "B",
|
| 28 |
+
"seq_len": 213,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"protenix_chain": "C",
|
| 33 |
+
"original_chain": "C",
|
| 34 |
+
"seq_len": 189,
|
| 35 |
+
"entity_type": "proteinChain"
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"protenix_chain": "D",
|
| 39 |
+
"original_chain": "D",
|
| 40 |
+
"seq_len": 230,
|
| 41 |
+
"entity_type": "proteinChain"
|
| 42 |
+
}
|
| 43 |
+
]
|
| 44 |
+
},
|
| 45 |
+
"cdr_info": {
|
| 46 |
+
"H_chain": {
|
| 47 |
+
"cdr_indices": [
|
| 48 |
+
25,
|
| 49 |
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26,
|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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| 57 |
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|
| 58 |
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| 59 |
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| 60 |
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| 65 |
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|
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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| 83 |
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| 84 |
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|
| 85 |
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|
| 105 |
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|
| 106 |
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| 107 |
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| 108 |
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|
| 109 |
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|
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|
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| 152 |
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|
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|
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|
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|
| 175 |
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|
| 176 |
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}
|
| 177 |
+
}
|
cdr_info/8wfm_A_a_B_cdr_info.json
ADDED
|
@@ -0,0 +1,191 @@
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|
| 1 |
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{
|
| 2 |
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"entry_name": "8wfm_A_a_B",
|
| 3 |
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"heavy_chain_id": "A",
|
| 4 |
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"light_chain_id": "a",
|
| 5 |
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|
| 6 |
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|
| 7 |
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"A": "A",
|
| 8 |
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"B": "B"
|
| 9 |
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},
|
| 10 |
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|
| 11 |
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"A": "A",
|
| 12 |
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"B": "B"
|
| 13 |
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},
|
| 14 |
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"sequence_order": [
|
| 15 |
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{
|
| 16 |
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"protenix_chain": "A",
|
| 17 |
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"original_chain": "A",
|
| 18 |
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"seq_len": 255,
|
| 19 |
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"entity_type": "proteinChain"
|
| 20 |
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},
|
| 21 |
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{
|
| 22 |
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"protenix_chain": "B",
|
| 23 |
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"original_chain": "B",
|
| 24 |
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"seq_len": 223,
|
| 25 |
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"entity_type": "proteinChain"
|
| 26 |
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}
|
| 27 |
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]
|
| 28 |
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},
|
| 29 |
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"cdr_info": {
|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
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|
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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"variable_domain_start_res_id": 1,
|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
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|
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|
| 71 |
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|
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
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|
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| 85 |
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| 86 |
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| 87 |
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|
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|
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|
| 108 |
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| 109 |
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|
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|
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|
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|
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|
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
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|
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|
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|
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|
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|
| 170 |
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|
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 186 |
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|
| 187 |
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|
| 188 |
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|
| 189 |
+
}
|
| 190 |
+
}
|
| 191 |
+
}
|
cdr_info/8wz4_H_L_C_cdr_info.json
ADDED
|
@@ -0,0 +1,167 @@
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
| 1 |
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{
|
| 2 |
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"entry_name": "8wz4_H_L_C",
|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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"B": "H",
|
| 9 |
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"C": "L"
|
| 10 |
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},
|
| 11 |
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|
| 12 |
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"C": "A",
|
| 13 |
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"H": "B",
|
| 14 |
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"L": "C"
|
| 15 |
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},
|
| 16 |
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|
| 17 |
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{
|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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{
|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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| 65 |
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| 67 |
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| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
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|
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
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|
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
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|
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|
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|
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|
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|
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
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|
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|
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|
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| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
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|
| 163 |
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|
| 164 |
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|
| 165 |
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}
|
| 166 |
+
}
|
| 167 |
+
}
|
cdr_info/8x2l_H_L_B_cdr_info.json
ADDED
|
@@ -0,0 +1,173 @@
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
|
|
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|
|
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|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8x2l_H_L_B",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "B",
|
| 8 |
+
"B": "H",
|
| 9 |
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"C": "L"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"B": "A",
|
| 13 |
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"H": "B",
|
| 14 |
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"L": "C"
|
| 15 |
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},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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"original_chain": "B",
|
| 20 |
+
"seq_len": 570,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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"protenix_chain": "B",
|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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|
| 32 |
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"seq_len": 236,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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"variable_domain_start_res_id": 24,
|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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31,
|
| 74 |
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|
| 75 |
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|
| 76 |
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},
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
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|
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|
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|
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|
| 95 |
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|
| 96 |
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|
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
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|
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|
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|
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|
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|
| 110 |
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|
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
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|
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|
| 137 |
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|
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
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|
| 144 |
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|
| 145 |
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|
| 146 |
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},
|
| 147 |
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"cdr2": {
|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
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|
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|
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
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|
| 163 |
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|
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|
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|
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|
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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}
|
| 172 |
+
}
|
| 173 |
+
}
|
cdr_info/8xi6_D_E_A_cdr_info.json
ADDED
|
@@ -0,0 +1,189 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
|
|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
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|
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|
|
|
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|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8xi6_D_E_A",
|
| 3 |
+
"heavy_chain_id": "D",
|
| 4 |
+
"light_chain_id": "E",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "D",
|
| 9 |
+
"C": "E"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"D": "B",
|
| 14 |
+
"E": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 1247,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "D",
|
| 26 |
+
"seq_len": 232,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "E",
|
| 32 |
+
"seq_len": 214,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
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|
| 40 |
+
25,
|
| 41 |
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26,
|
| 42 |
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|
| 43 |
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28,
|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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| 48 |
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| 49 |
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|
| 50 |
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|
| 51 |
+
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|
| 52 |
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|
| 53 |
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|
| 54 |
+
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|
| 55 |
+
100,
|
| 56 |
+
101,
|
| 57 |
+
102,
|
| 58 |
+
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|
| 59 |
+
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|
| 60 |
+
105,
|
| 61 |
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106,
|
| 62 |
+
107,
|
| 63 |
+
108,
|
| 64 |
+
109,
|
| 65 |
+
110,
|
| 66 |
+
111,
|
| 67 |
+
112,
|
| 68 |
+
113
|
| 69 |
+
],
|
| 70 |
+
"variable_domain_start_res_id": 1,
|
| 71 |
+
"cdr1": {
|
| 72 |
+
"indices": [
|
| 73 |
+
25,
|
| 74 |
+
26,
|
| 75 |
+
27,
|
| 76 |
+
28,
|
| 77 |
+
29,
|
| 78 |
+
30,
|
| 79 |
+
31
|
| 80 |
+
]
|
| 81 |
+
},
|
| 82 |
+
"cdr2": {
|
| 83 |
+
"indices": [
|
| 84 |
+
51,
|
| 85 |
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52,
|
| 86 |
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53,
|
| 87 |
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54,
|
| 88 |
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55,
|
| 89 |
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56
|
| 90 |
+
]
|
| 91 |
+
},
|
| 92 |
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|
| 93 |
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|
| 94 |
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98,
|
| 95 |
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| 96 |
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100,
|
| 97 |
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101,
|
| 98 |
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102,
|
| 99 |
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103,
|
| 100 |
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104,
|
| 101 |
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105,
|
| 102 |
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106,
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| 103 |
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107,
|
| 104 |
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108,
|
| 105 |
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109,
|
| 106 |
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110,
|
| 107 |
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111,
|
| 108 |
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112,
|
| 109 |
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113
|
| 110 |
+
]
|
| 111 |
+
}
|
| 112 |
+
},
|
| 113 |
+
"L_chain": {
|
| 114 |
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|
| 115 |
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22,
|
| 116 |
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23,
|
| 117 |
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24,
|
| 118 |
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25,
|
| 119 |
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26,
|
| 120 |
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27,
|
| 121 |
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28,
|
| 122 |
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29,
|
| 123 |
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30,
|
| 124 |
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31,
|
| 125 |
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32,
|
| 126 |
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48,
|
| 127 |
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| 128 |
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| 129 |
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51,
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| 130 |
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52,
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| 131 |
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| 132 |
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54,
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| 133 |
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| 134 |
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| 135 |
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| 136 |
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| 137 |
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| 138 |
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| 139 |
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93,
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| 140 |
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|
| 141 |
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95,
|
| 142 |
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96,
|
| 143 |
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97
|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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22,
|
| 149 |
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23,
|
| 150 |
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24,
|
| 151 |
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25,
|
| 152 |
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26,
|
| 153 |
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27,
|
| 154 |
+
28,
|
| 155 |
+
29,
|
| 156 |
+
30,
|
| 157 |
+
31,
|
| 158 |
+
32
|
| 159 |
+
]
|
| 160 |
+
},
|
| 161 |
+
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|
| 162 |
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|
| 163 |
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48,
|
| 164 |
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49,
|
| 165 |
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50,
|
| 166 |
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51,
|
| 167 |
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52,
|
| 168 |
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53,
|
| 169 |
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54
|
| 170 |
+
]
|
| 171 |
+
},
|
| 172 |
+
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|
| 173 |
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|
| 174 |
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87,
|
| 175 |
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88,
|
| 176 |
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89,
|
| 177 |
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90,
|
| 178 |
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91,
|
| 179 |
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92,
|
| 180 |
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93,
|
| 181 |
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94,
|
| 182 |
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95,
|
| 183 |
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96,
|
| 184 |
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97
|
| 185 |
+
]
|
| 186 |
+
}
|
| 187 |
+
}
|
| 188 |
+
}
|
| 189 |
+
}
|