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- cdr_info/7vgs_D_C_A_cdr_info.json +169 -0
- cdr_info/8q7s_F__D_cdr_info.json +112 -0
- cdr_info/8r40_A_a_C_cdr_info.json +193 -0
- cdr_info/8r9z_B_C_A_cdr_info.json +181 -0
- cdr_info/8rh2_H_L_B_cdr_info.json +179 -0
- cdr_info/8sgi_H_L_A_cdr_info.json +183 -0
- cdr_info/8slb_H_L_A_cdr_info.json +195 -0
- cdr_info/8smm_H_L_A_cdr_info.json +181 -0
- cdr_info/8t07_C_D_A_cdr_info.json +175 -0
- cdr_info/8t1g_G_I_CD_cdr_info.json +209 -0
- cdr_info/8tl5_G_H_AB_cdr_info.json +197 -0
- cdr_info/8tnj_E_F_A_cdr_info.json +189 -0
- cdr_info/8tui_H_L_A_cdr_info.json +181 -0
- cdr_info/8tzu_C__B_cdr_info.json +96 -0
- cdr_info/8uo9_B__A_cdr_info.json +94 -0
- cdr_info/8ut2_H_G_AB_cdr_info.json +185 -0
- cdr_info/8v5l_H_L_A_cdr_info.json +179 -0
- cdr_info/8vsj_H_L_AB_cdr_info.json +183 -0
- cdr_info/8vuj_H_L_A_cdr_info.json +179 -0
- cdr_info/8vvh_H_L_A_cdr_info.json +179 -0
- cdr_info/8w0y_A_B_D_cdr_info.json +183 -0
- cdr_info/8w85_A_B_CD_cdr_info.json +177 -0
- cdr_info/8wnp_B_A_E_cdr_info.json +165 -0
- cdr_info/8wze_H_L_C_cdr_info.json +169 -0
- cdr_info/8xk6_H_L_A_cdr_info.json +183 -0
- cdr_info/8xsf_H_L_B_cdr_info.json +187 -0
- cdr_info/8yx9_H_L_A_cdr_info.json +175 -0
- cdr_info/8yz5_G_K_D_cdr_info.json +173 -0
- cdr_info/8zby_H_D_A_cdr_info.json +197 -0
- cdr_info/9axl_H_L_B_cdr_info.json +183 -0
- cdr_info/9b9y_N__R_cdr_info.json +100 -0
- cdr_info/9bia_E__BD_cdr_info.json +104 -0
- cdr_info/9ctu_D_C_A_cdr_info.json +169 -0
- cdr_info/9df0_H_L_A_cdr_info.json +181 -0
- cdr_info/9fzc_C__A_cdr_info.json +96 -0
- protenix_json/7vgs_D_C_A.json +80 -0
- protenix_json/8euq_C_D_AB.json +117 -0
- protenix_json/8q94_C__A.json +67 -0
- protenix_json/8qot_B__A.json +51 -0
- protenix_json/8qz6_B__A.json +43 -0
- protenix_json/8qz7_B__A.json +43 -0
- protenix_json/8r4b_B__A.json +43 -0
- protenix_json/8r4d_B__A.json +43 -0
- protenix_json/8r8k_H_L_A.json +104 -0
- protenix_json/8r9y_H_L_A.json +104 -0
- protenix_json/8r9z_B_C_A.json +104 -0
- protenix_json/8rh2_H_L_B.json +104 -0
- protenix_json/8s0l_B__A.json +99 -0
- protenix_json/8s0n_B__A.json +83 -0
- protenix_json/8sdg_G_I_C.json +112 -0
cdr_info/7vgs_D_C_A_cdr_info.json
ADDED
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@@ -0,0 +1,169 @@
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{
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"entry_name": "7vgs_D_C_A",
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| 3 |
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"heavy_chain_id": "D",
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| 4 |
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"light_chain_id": "C",
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| 5 |
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"chain_mapping": {
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| 6 |
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"protenix_to_original": {
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| 7 |
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"A": "A",
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"B": "C",
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"C": "D"
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},
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"original_to_protenix": {
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"A": "A",
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"C": "B",
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"D": "C"
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},
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"sequence_order": [
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{
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"protenix_chain": "A",
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"original_chain": "A",
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"seq_len": 246,
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"entity_type": "proteinChain"
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},
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{
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"protenix_chain": "B",
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"original_chain": "C",
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"seq_len": 218,
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"entity_type": "proteinChain"
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},
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{
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"protenix_chain": "C",
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"original_chain": "D",
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"seq_len": 229,
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"entity_type": "proteinChain"
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}
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]
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},
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"cdr_info": {
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"H_chain": {
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],
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"variable_domain_start_res_id": 1,
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},
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"cdr2": {
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"cdr3": {
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}
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},
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"L_chain": {
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}
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}
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}
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cdr_info/8q7s_F__D_cdr_info.json
ADDED
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@@ -0,0 +1,112 @@
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| 1 |
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{
|
| 2 |
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"entry_name": "8q7s_F__D",
|
| 3 |
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"heavy_chain_id": "F",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "D",
|
| 8 |
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"B": "F"
|
| 9 |
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},
|
| 10 |
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"original_to_protenix": {
|
| 11 |
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"D": "A",
|
| 12 |
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"F": "B"
|
| 13 |
+
},
|
| 14 |
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"sequence_order": [
|
| 15 |
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{
|
| 16 |
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"protenix_chain": "A",
|
| 17 |
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"original_chain": "D",
|
| 18 |
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"seq_len": 196,
|
| 19 |
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"entity_type": "proteinChain"
|
| 20 |
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},
|
| 21 |
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{
|
| 22 |
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"protenix_chain": "B",
|
| 23 |
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"original_chain": "F",
|
| 24 |
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"seq_len": 131,
|
| 25 |
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"entity_type": "proteinChain"
|
| 26 |
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}
|
| 27 |
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]
|
| 28 |
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},
|
| 29 |
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"cdr_info": {
|
| 30 |
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"H_chain": {
|
| 31 |
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"cdr_indices": [
|
| 32 |
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|
| 33 |
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],
|
| 65 |
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"variable_domain_start_res_id": 4,
|
| 66 |
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"cdr1": {
|
| 67 |
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"indices": [
|
| 68 |
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|
| 77 |
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| 78 |
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|
| 86 |
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},
|
| 87 |
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"cdr3": {
|
| 88 |
+
"indices": [
|
| 89 |
+
98,
|
| 90 |
+
99,
|
| 91 |
+
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|
| 92 |
+
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
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|
| 101 |
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|
| 102 |
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|
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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}
|
| 111 |
+
}
|
| 112 |
+
}
|
cdr_info/8r40_A_a_C_cdr_info.json
ADDED
|
@@ -0,0 +1,193 @@
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|
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|
|
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|
|
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|
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|
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|
|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
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|
|
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|
|
|
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|
|
|
|
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|
|
|
|
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|
|
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|
|
|
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|
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|
|
|
|
|
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|
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|
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|
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|
|
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|
|
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|
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|
|
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|
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|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8r40_A_a_C",
|
| 3 |
+
"heavy_chain_id": "A",
|
| 4 |
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"light_chain_id": "a",
|
| 5 |
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"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "A",
|
| 8 |
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"B": "C"
|
| 9 |
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},
|
| 10 |
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"original_to_protenix": {
|
| 11 |
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"A": "A",
|
| 12 |
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"C": "B"
|
| 13 |
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},
|
| 14 |
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"sequence_order": [
|
| 15 |
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{
|
| 16 |
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"protenix_chain": "A",
|
| 17 |
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"original_chain": "A",
|
| 18 |
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"seq_len": 262,
|
| 19 |
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"entity_type": "proteinChain"
|
| 20 |
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},
|
| 21 |
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{
|
| 22 |
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"protenix_chain": "B",
|
| 23 |
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"original_chain": "C",
|
| 24 |
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"seq_len": 122,
|
| 25 |
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"entity_type": "proteinChain"
|
| 26 |
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}
|
| 27 |
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]
|
| 28 |
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},
|
| 29 |
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"cdr_info": {
|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
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|
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|
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|
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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"variable_domain_start_res_id": 4,
|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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"cdr2": {
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
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|
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|
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
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|
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|
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|
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 159 |
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|
| 160 |
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|
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
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|
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|
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|
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|
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 187 |
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|
| 188 |
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|
| 189 |
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|
| 190 |
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|
| 191 |
+
}
|
| 192 |
+
}
|
| 193 |
+
}
|
cdr_info/8r9z_B_C_A_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
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|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8r9z_B_C_A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
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|
| 5 |
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|
| 6 |
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|
| 7 |
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"A": "A",
|
| 8 |
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"B": "B",
|
| 9 |
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"C": "C"
|
| 10 |
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|
| 11 |
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|
| 12 |
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|
| 13 |
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|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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{
|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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|
| 32 |
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|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
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|
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|
| 44 |
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|
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|
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|
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|
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|
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|
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|
| 56 |
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|
| 57 |
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|
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|
| 59 |
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|
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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],
|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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24,
|
| 72 |
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25,
|
| 73 |
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26,
|
| 74 |
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27,
|
| 75 |
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28,
|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
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|
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|
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|
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|
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|
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|
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
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|
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|
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|
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|
| 123 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
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|
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|
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|
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
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|
| 171 |
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|
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|
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|
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|
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|
| 176 |
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|
| 177 |
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|
| 178 |
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}
|
| 179 |
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}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8rh2_H_L_B_cdr_info.json
ADDED
|
@@ -0,0 +1,179 @@
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
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|
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|
|
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|
|
|
|
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|
|
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|
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|
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|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
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|
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|
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|
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|
|
|
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|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
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|
|
|
|
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|
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|
|
|
|
|
|
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|
|
|
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|
|
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|
|
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|
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|
|
|
|
|
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|
|
|
|
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|
|
|
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|
|
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|
|
|
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|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8rh2_H_L_B",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
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"A": "B",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
+
"B": "A",
|
| 13 |
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"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
"original_chain": "B",
|
| 20 |
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"seq_len": 703,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
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"original_chain": "H",
|
| 26 |
+
"seq_len": 452,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 212,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
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26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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107,
|
| 63 |
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108,
|
| 64 |
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109,
|
| 65 |
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110
|
| 66 |
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],
|
| 67 |
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"variable_domain_start_res_id": 1,
|
| 68 |
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"cdr1": {
|
| 69 |
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"indices": [
|
| 70 |
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25,
|
| 71 |
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26,
|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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},
|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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54,
|
| 85 |
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|
| 86 |
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56
|
| 87 |
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|
| 88 |
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},
|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 102 |
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|
| 103 |
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110
|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
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|
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|
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|
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|
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|
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|
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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"variable_domain_start_res_id": 1,
|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
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|
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|
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|
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|
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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},
|
| 153 |
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"cdr2": {
|
| 154 |
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|
| 155 |
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|
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|
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
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|
| 168 |
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|
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|
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|
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|
| 172 |
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|
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
+
}
|
| 178 |
+
}
|
| 179 |
+
}
|
cdr_info/8sgi_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,183 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
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|
|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
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|
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|
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|
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|
|
|
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|
|
|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
|
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|
|
|
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|
|
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|
|
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|
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|
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|
|
|
|
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|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8sgi_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "L",
|
| 9 |
+
"C": "H"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"L": "B",
|
| 14 |
+
"H": "C"
|
| 15 |
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|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
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| 65 |
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| 66 |
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|
| 157 |
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|
| 158 |
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|
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|
| 181 |
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|
| 182 |
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|
| 183 |
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}
|
cdr_info/8slb_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,195 @@
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|
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|
| 1 |
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{
|
| 2 |
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"entry_name": "8slb_H_L_A",
|
| 3 |
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|
| 4 |
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|
| 5 |
+
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
| 13 |
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|
| 14 |
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"L": "C"
|
| 15 |
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},
|
| 16 |
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|
| 17 |
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{
|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
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|
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|
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|
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|
| 60 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 70 |
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|
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|
| 72 |
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|
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
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|
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|
| 86 |
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|
| 87 |
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| 88 |
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|
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|
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| 98 |
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|
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|
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|
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|
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
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|
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|
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|
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|
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|
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|
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
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|
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|
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|
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|
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|
| 192 |
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|
| 193 |
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}
|
| 194 |
+
}
|
| 195 |
+
}
|
cdr_info/8smm_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8smm_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 601,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 234,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 215,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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109,
|
| 65 |
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110,
|
| 66 |
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111
|
| 67 |
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|
| 68 |
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"variable_domain_start_res_id": 4,
|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
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|
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
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|
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|
| 120 |
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|
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|
| 122 |
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|
| 123 |
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|
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|
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|
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|
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|
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|
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|
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|
| 131 |
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|
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|
| 133 |
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|
| 134 |
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|
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
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|
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|
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|
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
+
}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8t07_C_D_A_cdr_info.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8t07_C_D_A",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": "D",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "C",
|
| 9 |
+
"C": "D"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"C": "B",
|
| 14 |
+
"D": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 221,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
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|
| 26 |
+
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|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
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|
| 32 |
+
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|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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|
| 35 |
+
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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"variable_domain_start_res_id": 1,
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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},
|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
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|
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|
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|
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|
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|
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|
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|
| 99 |
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|
| 100 |
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|
| 101 |
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}
|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
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|
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|
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|
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|
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|
| 157 |
+
55
|
| 158 |
+
]
|
| 159 |
+
},
|
| 160 |
+
"cdr3": {
|
| 161 |
+
"indices": [
|
| 162 |
+
88,
|
| 163 |
+
89,
|
| 164 |
+
90,
|
| 165 |
+
91,
|
| 166 |
+
92,
|
| 167 |
+
93,
|
| 168 |
+
94,
|
| 169 |
+
95,
|
| 170 |
+
96
|
| 171 |
+
]
|
| 172 |
+
}
|
| 173 |
+
}
|
| 174 |
+
}
|
| 175 |
+
}
|
cdr_info/8t1g_G_I_CD_cdr_info.json
ADDED
|
@@ -0,0 +1,209 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8t1g_G_I_CD",
|
| 3 |
+
"heavy_chain_id": "G",
|
| 4 |
+
"light_chain_id": "I",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "C",
|
| 8 |
+
"B": "D",
|
| 9 |
+
"C": "G",
|
| 10 |
+
"D": "I"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"C": "A",
|
| 14 |
+
"D": "B",
|
| 15 |
+
"G": "C",
|
| 16 |
+
"I": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
+
{
|
| 20 |
+
"protenix_chain": "A",
|
| 21 |
+
"original_chain": "C",
|
| 22 |
+
"seq_len": 321,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"protenix_chain": "B",
|
| 27 |
+
"original_chain": "D",
|
| 28 |
+
"seq_len": 210,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"protenix_chain": "C",
|
| 33 |
+
"original_chain": "G",
|
| 34 |
+
"seq_len": 232,
|
| 35 |
+
"entity_type": "proteinChain"
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"protenix_chain": "D",
|
| 39 |
+
"original_chain": "I",
|
| 40 |
+
"seq_len": 219,
|
| 41 |
+
"entity_type": "proteinChain"
|
| 42 |
+
}
|
| 43 |
+
]
|
| 44 |
+
},
|
| 45 |
+
"cdr_info": {
|
| 46 |
+
"H_chain": {
|
| 47 |
+
"cdr_indices": [
|
| 48 |
+
25,
|
| 49 |
+
26,
|
| 50 |
+
27,
|
| 51 |
+
28,
|
| 52 |
+
29,
|
| 53 |
+
30,
|
| 54 |
+
31,
|
| 55 |
+
51,
|
| 56 |
+
52,
|
| 57 |
+
53,
|
| 58 |
+
54,
|
| 59 |
+
55,
|
| 60 |
+
97,
|
| 61 |
+
98,
|
| 62 |
+
99,
|
| 63 |
+
100,
|
| 64 |
+
101,
|
| 65 |
+
102,
|
| 66 |
+
103,
|
| 67 |
+
104,
|
| 68 |
+
105,
|
| 69 |
+
106,
|
| 70 |
+
107,
|
| 71 |
+
108,
|
| 72 |
+
109,
|
| 73 |
+
110,
|
| 74 |
+
111,
|
| 75 |
+
112,
|
| 76 |
+
113,
|
| 77 |
+
114,
|
| 78 |
+
115
|
| 79 |
+
],
|
| 80 |
+
"variable_domain_start_res_id": 1,
|
| 81 |
+
"cdr1": {
|
| 82 |
+
"indices": [
|
| 83 |
+
25,
|
| 84 |
+
26,
|
| 85 |
+
27,
|
| 86 |
+
28,
|
| 87 |
+
29,
|
| 88 |
+
30,
|
| 89 |
+
31
|
| 90 |
+
]
|
| 91 |
+
},
|
| 92 |
+
"cdr2": {
|
| 93 |
+
"indices": [
|
| 94 |
+
51,
|
| 95 |
+
52,
|
| 96 |
+
53,
|
| 97 |
+
54,
|
| 98 |
+
55
|
| 99 |
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]
|
| 100 |
+
},
|
| 101 |
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"cdr3": {
|
| 102 |
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"indices": [
|
| 103 |
+
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|
| 104 |
+
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|
| 105 |
+
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
+
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|
| 113 |
+
107,
|
| 114 |
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108,
|
| 115 |
+
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|
| 116 |
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110,
|
| 117 |
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|
| 118 |
+
112,
|
| 119 |
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113,
|
| 120 |
+
114,
|
| 121 |
+
115
|
| 122 |
+
]
|
| 123 |
+
}
|
| 124 |
+
},
|
| 125 |
+
"L_chain": {
|
| 126 |
+
"cdr_indices": [
|
| 127 |
+
22,
|
| 128 |
+
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
+
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|
| 158 |
+
100,
|
| 159 |
+
101
|
| 160 |
+
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|
| 161 |
+
"variable_domain_start_res_id": 1,
|
| 162 |
+
"cdr1": {
|
| 163 |
+
"indices": [
|
| 164 |
+
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|
| 165 |
+
23,
|
| 166 |
+
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|
| 167 |
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|
| 168 |
+
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|
| 169 |
+
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|
| 170 |
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|
| 171 |
+
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|
| 172 |
+
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|
| 173 |
+
31,
|
| 174 |
+
32,
|
| 175 |
+
33,
|
| 176 |
+
34,
|
| 177 |
+
35,
|
| 178 |
+
36,
|
| 179 |
+
37
|
| 180 |
+
]
|
| 181 |
+
},
|
| 182 |
+
"cdr2": {
|
| 183 |
+
"indices": [
|
| 184 |
+
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|
| 185 |
+
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|
| 186 |
+
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|
| 187 |
+
56,
|
| 188 |
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|
| 189 |
+
58,
|
| 190 |
+
59
|
| 191 |
+
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|
| 192 |
+
},
|
| 193 |
+
"cdr3": {
|
| 194 |
+
"indices": [
|
| 195 |
+
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|
| 196 |
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93,
|
| 197 |
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|
| 198 |
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|
| 199 |
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|
| 200 |
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|
| 201 |
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|
| 202 |
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|
| 203 |
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|
| 204 |
+
101
|
| 205 |
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|
| 206 |
+
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|
| 207 |
+
}
|
| 208 |
+
}
|
| 209 |
+
}
|
cdr_info/8tl5_G_H_AB_cdr_info.json
ADDED
|
@@ -0,0 +1,197 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tl5_G_H_AB",
|
| 3 |
+
"heavy_chain_id": "G",
|
| 4 |
+
"light_chain_id": "H",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "G",
|
| 10 |
+
"D": "H"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"A": "A",
|
| 14 |
+
"B": "B",
|
| 15 |
+
"G": "C",
|
| 16 |
+
"H": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
+
{
|
| 20 |
+
"protenix_chain": "A",
|
| 21 |
+
"original_chain": "A",
|
| 22 |
+
"seq_len": 481,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"protenix_chain": "B",
|
| 27 |
+
"original_chain": "B",
|
| 28 |
+
"seq_len": 153,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"protenix_chain": "C",
|
| 33 |
+
"original_chain": "G",
|
| 34 |
+
"seq_len": 237,
|
| 35 |
+
"entity_type": "proteinChain"
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"protenix_chain": "D",
|
| 39 |
+
"original_chain": "H",
|
| 40 |
+
"seq_len": 214,
|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
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| 78 |
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|
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|
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|
| 195 |
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|
| 196 |
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|
| 197 |
+
}
|
cdr_info/8tnj_E_F_A_cdr_info.json
ADDED
|
@@ -0,0 +1,189 @@
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|
|
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|
|
|
|
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|
|
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|
|
|
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|
|
|
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|
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|
|
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|
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|
| 1 |
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{
|
| 2 |
+
"entry_name": "8tnj_E_F_A",
|
| 3 |
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"heavy_chain_id": "E",
|
| 4 |
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"light_chain_id": "F",
|
| 5 |
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"chain_mapping": {
|
| 6 |
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|
| 7 |
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"A": "A",
|
| 8 |
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"B": "E",
|
| 9 |
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"C": "F"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"A": "A",
|
| 13 |
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"E": "B",
|
| 14 |
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"F": "C"
|
| 15 |
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},
|
| 16 |
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|
| 17 |
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{
|
| 18 |
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|
| 19 |
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|
| 20 |
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"seq_len": 439,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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"protenix_chain": "B",
|
| 25 |
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|
| 26 |
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"seq_len": 238,
|
| 27 |
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|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
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|
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|
| 83 |
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|
| 84 |
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| 85 |
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|
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|
| 93 |
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| 94 |
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|
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
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|
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|
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|
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|
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|
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|
| 150 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 163 |
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|
| 164 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 186 |
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|
| 187 |
+
}
|
| 188 |
+
}
|
| 189 |
+
}
|
cdr_info/8tui_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
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|
|
|
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|
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|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tui_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "H",
|
| 8 |
+
"B": "L",
|
| 9 |
+
"C": "A"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"H": "A",
|
| 13 |
+
"L": "B",
|
| 14 |
+
"A": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "H",
|
| 20 |
+
"seq_len": 265,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "L",
|
| 26 |
+
"seq_len": 214,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "A",
|
| 32 |
+
"seq_len": 257,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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102,
|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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107,
|
| 63 |
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|
| 64 |
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|
| 65 |
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110,
|
| 66 |
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111
|
| 67 |
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|
| 68 |
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"variable_domain_start_res_id": 3,
|
| 69 |
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"cdr1": {
|
| 70 |
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"indices": [
|
| 71 |
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25,
|
| 72 |
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26,
|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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31
|
| 78 |
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]
|
| 79 |
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},
|
| 80 |
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"cdr2": {
|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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},
|
| 90 |
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"cdr3": {
|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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108,
|
| 103 |
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109,
|
| 104 |
+
110,
|
| 105 |
+
111
|
| 106 |
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]
|
| 107 |
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}
|
| 108 |
+
},
|
| 109 |
+
"L_chain": {
|
| 110 |
+
"cdr_indices": [
|
| 111 |
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23,
|
| 112 |
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24,
|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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31,
|
| 120 |
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32,
|
| 121 |
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33,
|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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93,
|
| 135 |
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94,
|
| 136 |
+
95,
|
| 137 |
+
96
|
| 138 |
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],
|
| 139 |
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"variable_domain_start_res_id": 1,
|
| 140 |
+
"cdr1": {
|
| 141 |
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"indices": [
|
| 142 |
+
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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28,
|
| 148 |
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29,
|
| 149 |
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30,
|
| 150 |
+
31,
|
| 151 |
+
32,
|
| 152 |
+
33
|
| 153 |
+
]
|
| 154 |
+
},
|
| 155 |
+
"cdr2": {
|
| 156 |
+
"indices": [
|
| 157 |
+
49,
|
| 158 |
+
50,
|
| 159 |
+
51,
|
| 160 |
+
52,
|
| 161 |
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53,
|
| 162 |
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|
| 163 |
+
55
|
| 164 |
+
]
|
| 165 |
+
},
|
| 166 |
+
"cdr3": {
|
| 167 |
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"indices": [
|
| 168 |
+
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|
| 169 |
+
89,
|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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95,
|
| 176 |
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96
|
| 177 |
+
]
|
| 178 |
+
}
|
| 179 |
+
}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8tzu_C__B_cdr_info.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tzu_C__B",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "B",
|
| 8 |
+
"B": "C"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"B": "A",
|
| 12 |
+
"C": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "B",
|
| 18 |
+
"seq_len": 275,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "C",
|
| 24 |
+
"seq_len": 121,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
+
27,
|
| 35 |
+
28,
|
| 36 |
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29,
|
| 37 |
+
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|
| 38 |
+
31,
|
| 39 |
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51,
|
| 40 |
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|
| 41 |
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53,
|
| 42 |
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|
| 43 |
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|
| 44 |
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56,
|
| 45 |
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|
| 46 |
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|
| 47 |
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100,
|
| 48 |
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|
| 49 |
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102,
|
| 50 |
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103,
|
| 51 |
+
104,
|
| 52 |
+
105,
|
| 53 |
+
106,
|
| 54 |
+
107,
|
| 55 |
+
108
|
| 56 |
+
],
|
| 57 |
+
"variable_domain_start_res_id": 1,
|
| 58 |
+
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|
| 59 |
+
"indices": [
|
| 60 |
+
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|
| 61 |
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26,
|
| 62 |
+
27,
|
| 63 |
+
28,
|
| 64 |
+
29,
|
| 65 |
+
30,
|
| 66 |
+
31
|
| 67 |
+
]
|
| 68 |
+
},
|
| 69 |
+
"cdr2": {
|
| 70 |
+
"indices": [
|
| 71 |
+
51,
|
| 72 |
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52,
|
| 73 |
+
53,
|
| 74 |
+
54,
|
| 75 |
+
55,
|
| 76 |
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56
|
| 77 |
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|
| 78 |
+
},
|
| 79 |
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"cdr3": {
|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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108
|
| 92 |
+
]
|
| 93 |
+
}
|
| 94 |
+
}
|
| 95 |
+
}
|
| 96 |
+
}
|
cdr_info/8uo9_B__A_cdr_info.json
ADDED
|
@@ -0,0 +1,94 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8uo9_B__A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"A": "A",
|
| 12 |
+
"B": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "A",
|
| 18 |
+
"seq_len": 680,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "B",
|
| 24 |
+
"seq_len": 142,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
+
27,
|
| 35 |
+
28,
|
| 36 |
+
29,
|
| 37 |
+
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|
| 38 |
+
31,
|
| 39 |
+
51,
|
| 40 |
+
52,
|
| 41 |
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53,
|
| 42 |
+
54,
|
| 43 |
+
55,
|
| 44 |
+
97,
|
| 45 |
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98,
|
| 46 |
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99,
|
| 47 |
+
100,
|
| 48 |
+
101,
|
| 49 |
+
102,
|
| 50 |
+
103,
|
| 51 |
+
104,
|
| 52 |
+
105,
|
| 53 |
+
106,
|
| 54 |
+
107
|
| 55 |
+
],
|
| 56 |
+
"variable_domain_start_res_id": 1,
|
| 57 |
+
"cdr1": {
|
| 58 |
+
"indices": [
|
| 59 |
+
25,
|
| 60 |
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26,
|
| 61 |
+
27,
|
| 62 |
+
28,
|
| 63 |
+
29,
|
| 64 |
+
30,
|
| 65 |
+
31
|
| 66 |
+
]
|
| 67 |
+
},
|
| 68 |
+
"cdr2": {
|
| 69 |
+
"indices": [
|
| 70 |
+
51,
|
| 71 |
+
52,
|
| 72 |
+
53,
|
| 73 |
+
54,
|
| 74 |
+
55
|
| 75 |
+
]
|
| 76 |
+
},
|
| 77 |
+
"cdr3": {
|
| 78 |
+
"indices": [
|
| 79 |
+
97,
|
| 80 |
+
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|
| 81 |
+
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|
| 82 |
+
100,
|
| 83 |
+
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|
| 84 |
+
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
+
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|
| 89 |
+
107
|
| 90 |
+
]
|
| 91 |
+
}
|
| 92 |
+
}
|
| 93 |
+
}
|
| 94 |
+
}
|
cdr_info/8ut2_H_G_AB_cdr_info.json
ADDED
|
@@ -0,0 +1,185 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8ut2_H_G_AB",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "G",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "G",
|
| 10 |
+
"D": "H"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"A": "A",
|
| 14 |
+
"B": "B",
|
| 15 |
+
"G": "C",
|
| 16 |
+
"H": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
+
{
|
| 20 |
+
"protenix_chain": "A",
|
| 21 |
+
"original_chain": "A",
|
| 22 |
+
"seq_len": 112,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"protenix_chain": "B",
|
| 27 |
+
"original_chain": "B",
|
| 28 |
+
"seq_len": 420,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"protenix_chain": "C",
|
| 33 |
+
"original_chain": "G",
|
| 34 |
+
"seq_len": 233,
|
| 35 |
+
"entity_type": "proteinChain"
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"protenix_chain": "D",
|
| 39 |
+
"original_chain": "H",
|
| 40 |
+
"seq_len": 479,
|
| 41 |
+
"entity_type": "proteinChain"
|
| 42 |
+
}
|
| 43 |
+
]
|
| 44 |
+
},
|
| 45 |
+
"cdr_info": {
|
| 46 |
+
"H_chain": {
|
| 47 |
+
"cdr_indices": [
|
| 48 |
+
25,
|
| 49 |
+
26,
|
| 50 |
+
27,
|
| 51 |
+
28,
|
| 52 |
+
29,
|
| 53 |
+
30,
|
| 54 |
+
31,
|
| 55 |
+
32,
|
| 56 |
+
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|
| 57 |
+
53,
|
| 58 |
+
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|
| 59 |
+
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|
| 60 |
+
56,
|
| 61 |
+
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|
| 62 |
+
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|
| 63 |
+
100,
|
| 64 |
+
101,
|
| 65 |
+
102,
|
| 66 |
+
103,
|
| 67 |
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104,
|
| 68 |
+
105,
|
| 69 |
+
106,
|
| 70 |
+
107,
|
| 71 |
+
108,
|
| 72 |
+
109
|
| 73 |
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],
|
| 74 |
+
"variable_domain_start_res_id": 20,
|
| 75 |
+
"cdr1": {
|
| 76 |
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"indices": [
|
| 77 |
+
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|
| 78 |
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26,
|
| 79 |
+
27,
|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
+
31,
|
| 84 |
+
32
|
| 85 |
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]
|
| 86 |
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},
|
| 87 |
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"cdr2": {
|
| 88 |
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"indices": [
|
| 89 |
+
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|
| 90 |
+
53,
|
| 91 |
+
54,
|
| 92 |
+
55,
|
| 93 |
+
56
|
| 94 |
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]
|
| 95 |
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},
|
| 96 |
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"cdr3": {
|
| 97 |
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"indices": [
|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
+
108,
|
| 109 |
+
109
|
| 110 |
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]
|
| 111 |
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}
|
| 112 |
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},
|
| 113 |
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"L_chain": {
|
| 114 |
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"cdr_indices": [
|
| 115 |
+
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|
| 116 |
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|
| 117 |
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|
| 118 |
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26,
|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
+
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|
| 141 |
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96
|
| 142 |
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],
|
| 143 |
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"variable_domain_start_res_id": 20,
|
| 144 |
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|
| 145 |
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"indices": [
|
| 146 |
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|
| 147 |
+
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
+
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|
| 154 |
+
31,
|
| 155 |
+
32,
|
| 156 |
+
33
|
| 157 |
+
]
|
| 158 |
+
},
|
| 159 |
+
"cdr2": {
|
| 160 |
+
"indices": [
|
| 161 |
+
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
+
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|
| 167 |
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55
|
| 168 |
+
]
|
| 169 |
+
},
|
| 170 |
+
"cdr3": {
|
| 171 |
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"indices": [
|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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96
|
| 181 |
+
]
|
| 182 |
+
}
|
| 183 |
+
}
|
| 184 |
+
}
|
| 185 |
+
}
|
cdr_info/8v5l_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,179 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8v5l_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "H",
|
| 8 |
+
"B": "L",
|
| 9 |
+
"C": "A"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"H": "A",
|
| 13 |
+
"L": "B",
|
| 14 |
+
"A": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "H",
|
| 20 |
+
"seq_len": 243,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "L",
|
| 26 |
+
"seq_len": 214,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "A",
|
| 32 |
+
"seq_len": 203,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
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|
| 41 |
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26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
+
107,
|
| 63 |
+
108,
|
| 64 |
+
109
|
| 65 |
+
],
|
| 66 |
+
"variable_domain_start_res_id": 1,
|
| 67 |
+
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|
| 68 |
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"indices": [
|
| 69 |
+
25,
|
| 70 |
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26,
|
| 71 |
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27,
|
| 72 |
+
28,
|
| 73 |
+
29,
|
| 74 |
+
30,
|
| 75 |
+
31
|
| 76 |
+
]
|
| 77 |
+
},
|
| 78 |
+
"cdr2": {
|
| 79 |
+
"indices": [
|
| 80 |
+
51,
|
| 81 |
+
52,
|
| 82 |
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53,
|
| 83 |
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54,
|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
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|
| 93 |
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|
| 94 |
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|
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|
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|
| 97 |
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|
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
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|
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|
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|
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|
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|
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|
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
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|
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|
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|
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|
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|
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
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|
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|
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|
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|
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|
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|
| 175 |
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|
| 176 |
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|
| 177 |
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}
|
| 178 |
+
}
|
| 179 |
+
}
|
cdr_info/8vsj_H_L_AB_cdr_info.json
ADDED
|
@@ -0,0 +1,183 @@
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
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|
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|
|
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|
|
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|
|
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|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
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|
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|
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|
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|
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|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8vsj_H_L_AB",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "A",
|
| 8 |
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"B": "B",
|
| 9 |
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"C": "H",
|
| 10 |
+
"D": "L"
|
| 11 |
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},
|
| 12 |
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"original_to_protenix": {
|
| 13 |
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"A": "A",
|
| 14 |
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"B": "B",
|
| 15 |
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"H": "C",
|
| 16 |
+
"L": "D"
|
| 17 |
+
},
|
| 18 |
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"sequence_order": [
|
| 19 |
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{
|
| 20 |
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"protenix_chain": "A",
|
| 21 |
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"original_chain": "A",
|
| 22 |
+
"seq_len": 184,
|
| 23 |
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"entity_type": "proteinChain"
|
| 24 |
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},
|
| 25 |
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{
|
| 26 |
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"protenix_chain": "B",
|
| 27 |
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"original_chain": "B",
|
| 28 |
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"seq_len": 192,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
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},
|
| 31 |
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{
|
| 32 |
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"protenix_chain": "C",
|
| 33 |
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"original_chain": "H",
|
| 34 |
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"seq_len": 223,
|
| 35 |
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"entity_type": "proteinChain"
|
| 36 |
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},
|
| 37 |
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{
|
| 38 |
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"protenix_chain": "D",
|
| 39 |
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"original_chain": "L",
|
| 40 |
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"seq_len": 214,
|
| 41 |
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"entity_type": "proteinChain"
|
| 42 |
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}
|
| 43 |
+
]
|
| 44 |
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},
|
| 45 |
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"cdr_info": {
|
| 46 |
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"H_chain": {
|
| 47 |
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"cdr_indices": [
|
| 48 |
+
25,
|
| 49 |
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26,
|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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102,
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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107,
|
| 71 |
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108
|
| 72 |
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|
| 73 |
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"variable_domain_start_res_id": 1,
|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
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|
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|
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
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|
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|
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|
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|
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|
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
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|
| 116 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
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|
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|
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|
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|
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|
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|
| 151 |
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|
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|
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
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|
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|
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
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|
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|
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|
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
+
}
|
| 182 |
+
}
|
| 183 |
+
}
|
cdr_info/8vuj_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,179 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
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|
|
|
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|
|
|
|
|
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|
|
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|
|
|
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|
|
|
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|
|
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|
|
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|
|
|
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|
|
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|
|
|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
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|
|
|
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|
|
|
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|
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|
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|
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|
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|
|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8vuj_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
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},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
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"original_chain": "A",
|
| 20 |
+
"seq_len": 815,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 117,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
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|
| 32 |
+
"seq_len": 109,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
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| 48 |
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| 59 |
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|
| 60 |
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| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
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|
| 76 |
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| 77 |
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| 78 |
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| 79 |
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|
| 80 |
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| 83 |
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| 85 |
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| 86 |
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|
| 87 |
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| 88 |
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|
| 89 |
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|
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
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|
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|
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
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|
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|
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|
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|
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|
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
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|
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|
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|
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|
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
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|
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|
| 175 |
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|
| 176 |
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|
| 177 |
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}
|
| 178 |
+
}
|
| 179 |
+
}
|
cdr_info/8vvh_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,179 @@
|
|
|
|
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|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
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|
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|
|
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|
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|
|
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|
|
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|
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|
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|
|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8vvh_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
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"seq_len": 369,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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"protenix_chain": "B",
|
| 25 |
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"original_chain": "H",
|
| 26 |
+
"seq_len": 115,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 108,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
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|
| 51 |
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|
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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106,
|
| 63 |
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|
| 64 |
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],
|
| 65 |
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"variable_domain_start_res_id": 1,
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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},
|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
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|
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|
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|
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|
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|
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|
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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},
|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
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|
| 110 |
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|
| 111 |
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|
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|
| 113 |
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|
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|
| 115 |
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|
| 116 |
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|
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|
| 118 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
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|
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|
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|
| 145 |
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|
| 146 |
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|
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|
| 148 |
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32,
|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
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|
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|
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|
| 160 |
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|
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
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|
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|
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
+
}
|
| 178 |
+
}
|
| 179 |
+
}
|
cdr_info/8w0y_A_B_D_cdr_info.json
ADDED
|
@@ -0,0 +1,183 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
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|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
|
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|
|
|
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|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8w0y_A_B_D",
|
| 3 |
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"heavy_chain_id": "A",
|
| 4 |
+
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|
| 5 |
+
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|
| 6 |
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|
| 7 |
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"A": "A",
|
| 8 |
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"B": "B",
|
| 9 |
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"C": "D"
|
| 10 |
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},
|
| 11 |
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|
| 12 |
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"A": "A",
|
| 13 |
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|
| 14 |
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"D": "C"
|
| 15 |
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},
|
| 16 |
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|
| 17 |
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{
|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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{
|
| 30 |
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|
| 31 |
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|
| 32 |
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"seq_len": 262,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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| 42 |
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|
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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| 73 |
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| 75 |
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| 79 |
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| 80 |
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| 81 |
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| 82 |
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| 83 |
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| 88 |
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|
| 89 |
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|
| 90 |
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| 91 |
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|
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|
| 108 |
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| 109 |
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|
| 110 |
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|
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|
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|
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
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|
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|
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|
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|
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|
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
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|
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|
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|
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
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|
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|
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
+
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|
| 183 |
+
}
|
cdr_info/8w85_A_B_CD_cdr_info.json
ADDED
|
@@ -0,0 +1,177 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8w85_A_B_CD",
|
| 3 |
+
"heavy_chain_id": "A",
|
| 4 |
+
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|
| 5 |
+
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|
| 6 |
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|
| 7 |
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"A": "A",
|
| 8 |
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"B": "B",
|
| 9 |
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"C": "C",
|
| 10 |
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"D": "D"
|
| 11 |
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|
| 12 |
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|
| 13 |
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"A": "A",
|
| 14 |
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|
| 15 |
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|
| 16 |
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"D": "D"
|
| 17 |
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|
| 18 |
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|
| 19 |
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{
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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{
|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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{
|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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{
|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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}
|
| 43 |
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|
| 44 |
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},
|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
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|
| 52 |
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|
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|
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|
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|
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|
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|
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|
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|
| 60 |
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|
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|
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|
| 63 |
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|
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|
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|
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|
| 67 |
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|
| 68 |
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105,
|
| 69 |
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|
| 70 |
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|
| 71 |
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"variable_domain_start_res_id": 1,
|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
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|
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|
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
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|
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|
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|
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|
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|
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
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|
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|
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|
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|
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
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|
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|
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|
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|
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|
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|
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
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|
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|
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|
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|
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|
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|
| 173 |
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|
| 174 |
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|
| 175 |
+
}
|
| 176 |
+
}
|
| 177 |
+
}
|
cdr_info/8wnp_B_A_E_cdr_info.json
ADDED
|
@@ -0,0 +1,165 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8wnp_B_A_E",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": "A",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "E"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"B": "B",
|
| 14 |
+
"E": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 215,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "B",
|
| 26 |
+
"seq_len": 224,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "E",
|
| 32 |
+
"seq_len": 352,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
+
27,
|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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100,
|
| 56 |
+
101,
|
| 57 |
+
102,
|
| 58 |
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103
|
| 59 |
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|
| 60 |
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"variable_domain_start_res_id": 2,
|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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26,
|
| 65 |
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|
| 66 |
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|
| 67 |
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29,
|
| 68 |
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30,
|
| 69 |
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31
|
| 70 |
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|
| 71 |
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},
|
| 72 |
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"cdr2": {
|
| 73 |
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|
| 74 |
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51,
|
| 75 |
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52,
|
| 76 |
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53,
|
| 77 |
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|
| 78 |
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55
|
| 79 |
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|
| 80 |
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},
|
| 81 |
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"cdr3": {
|
| 82 |
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"indices": [
|
| 83 |
+
97,
|
| 84 |
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|
| 85 |
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|
| 86 |
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100,
|
| 87 |
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101,
|
| 88 |
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102,
|
| 89 |
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103
|
| 90 |
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|
| 91 |
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}
|
| 92 |
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},
|
| 93 |
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"L_chain": {
|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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"variable_domain_start_res_id": 2,
|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
+
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|
| 150 |
+
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
+
}
|
| 163 |
+
}
|
| 164 |
+
}
|
| 165 |
+
}
|
cdr_info/8wze_H_L_C_cdr_info.json
ADDED
|
@@ -0,0 +1,169 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8wze_H_L_C",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "H",
|
| 8 |
+
"B": "L",
|
| 9 |
+
"C": "C"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"H": "A",
|
| 13 |
+
"L": "B",
|
| 14 |
+
"C": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "H",
|
| 20 |
+
"seq_len": 116,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "L",
|
| 26 |
+
"seq_len": 107,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "C",
|
| 32 |
+
"seq_len": 259,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
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|
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|
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|
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|
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
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|
| 145 |
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|
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|
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|
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|
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|
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|
| 151 |
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|
| 152 |
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|
| 153 |
+
"cdr3": {
|
| 154 |
+
"indices": [
|
| 155 |
+
87,
|
| 156 |
+
88,
|
| 157 |
+
89,
|
| 158 |
+
90,
|
| 159 |
+
91,
|
| 160 |
+
92,
|
| 161 |
+
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|
| 162 |
+
94,
|
| 163 |
+
95,
|
| 164 |
+
96
|
| 165 |
+
]
|
| 166 |
+
}
|
| 167 |
+
}
|
| 168 |
+
}
|
| 169 |
+
}
|
cdr_info/8xk6_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,183 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8xk6_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 357,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 251,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 237,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
+
27,
|
| 43 |
+
28,
|
| 44 |
+
29,
|
| 45 |
+
30,
|
| 46 |
+
31,
|
| 47 |
+
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|
| 48 |
+
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|
| 49 |
+
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|
| 50 |
+
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|
| 51 |
+
55,
|
| 52 |
+
56,
|
| 53 |
+
98,
|
| 54 |
+
99,
|
| 55 |
+
100,
|
| 56 |
+
101,
|
| 57 |
+
102,
|
| 58 |
+
103,
|
| 59 |
+
104,
|
| 60 |
+
105,
|
| 61 |
+
106,
|
| 62 |
+
107,
|
| 63 |
+
108
|
| 64 |
+
],
|
| 65 |
+
"variable_domain_start_res_id": 20,
|
| 66 |
+
"cdr1": {
|
| 67 |
+
"indices": [
|
| 68 |
+
25,
|
| 69 |
+
26,
|
| 70 |
+
27,
|
| 71 |
+
28,
|
| 72 |
+
29,
|
| 73 |
+
30,
|
| 74 |
+
31
|
| 75 |
+
]
|
| 76 |
+
},
|
| 77 |
+
"cdr2": {
|
| 78 |
+
"indices": [
|
| 79 |
+
51,
|
| 80 |
+
52,
|
| 81 |
+
53,
|
| 82 |
+
54,
|
| 83 |
+
55,
|
| 84 |
+
56
|
| 85 |
+
]
|
| 86 |
+
},
|
| 87 |
+
"cdr3": {
|
| 88 |
+
"indices": [
|
| 89 |
+
98,
|
| 90 |
+
99,
|
| 91 |
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100,
|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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107,
|
| 99 |
+
108
|
| 100 |
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]
|
| 101 |
+
}
|
| 102 |
+
},
|
| 103 |
+
"L_chain": {
|
| 104 |
+
"cdr_indices": [
|
| 105 |
+
23,
|
| 106 |
+
24,
|
| 107 |
+
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|
| 108 |
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26,
|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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33,
|
| 116 |
+
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|
| 117 |
+
35,
|
| 118 |
+
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|
| 119 |
+
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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98,
|
| 134 |
+
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|
| 135 |
+
100
|
| 136 |
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],
|
| 137 |
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"variable_domain_start_res_id": 20,
|
| 138 |
+
"cdr1": {
|
| 139 |
+
"indices": [
|
| 140 |
+
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|
| 141 |
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|
| 142 |
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|
| 143 |
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26,
|
| 144 |
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|
| 145 |
+
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|
| 146 |
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|
| 147 |
+
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|
| 148 |
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|
| 149 |
+
32,
|
| 150 |
+
33,
|
| 151 |
+
34,
|
| 152 |
+
35,
|
| 153 |
+
36,
|
| 154 |
+
37
|
| 155 |
+
]
|
| 156 |
+
},
|
| 157 |
+
"cdr2": {
|
| 158 |
+
"indices": [
|
| 159 |
+
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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57,
|
| 164 |
+
58,
|
| 165 |
+
59
|
| 166 |
+
]
|
| 167 |
+
},
|
| 168 |
+
"cdr3": {
|
| 169 |
+
"indices": [
|
| 170 |
+
92,
|
| 171 |
+
93,
|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
+
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|
| 176 |
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98,
|
| 177 |
+
99,
|
| 178 |
+
100
|
| 179 |
+
]
|
| 180 |
+
}
|
| 181 |
+
}
|
| 182 |
+
}
|
| 183 |
+
}
|
cdr_info/8xsf_H_L_B_cdr_info.json
ADDED
|
@@ -0,0 +1,187 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
|
|
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|
|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
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|
|
|
|
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|
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|
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|
|
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|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8xsf_H_L_B",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "B",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"B": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "B",
|
| 20 |
+
"seq_len": 209,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 456,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 215,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
+
27,
|
| 43 |
+
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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109,
|
| 65 |
+
110,
|
| 66 |
+
111,
|
| 67 |
+
112,
|
| 68 |
+
113,
|
| 69 |
+
114
|
| 70 |
+
],
|
| 71 |
+
"variable_domain_start_res_id": 1,
|
| 72 |
+
"cdr1": {
|
| 73 |
+
"indices": [
|
| 74 |
+
25,
|
| 75 |
+
26,
|
| 76 |
+
27,
|
| 77 |
+
28,
|
| 78 |
+
29,
|
| 79 |
+
30,
|
| 80 |
+
31
|
| 81 |
+
]
|
| 82 |
+
},
|
| 83 |
+
"cdr2": {
|
| 84 |
+
"indices": [
|
| 85 |
+
51,
|
| 86 |
+
52,
|
| 87 |
+
53,
|
| 88 |
+
54,
|
| 89 |
+
55,
|
| 90 |
+
56
|
| 91 |
+
]
|
| 92 |
+
},
|
| 93 |
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"cdr3": {
|
| 94 |
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"indices": [
|
| 95 |
+
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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110,
|
| 108 |
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|
| 109 |
+
112,
|
| 110 |
+
113,
|
| 111 |
+
114
|
| 112 |
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]
|
| 113 |
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}
|
| 114 |
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},
|
| 115 |
+
"L_chain": {
|
| 116 |
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|
| 117 |
+
23,
|
| 118 |
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24,
|
| 119 |
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|
| 120 |
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26,
|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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31,
|
| 126 |
+
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|
| 127 |
+
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|
| 128 |
+
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|
| 129 |
+
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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96
|
| 144 |
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],
|
| 145 |
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"variable_domain_start_res_id": 1,
|
| 146 |
+
"cdr1": {
|
| 147 |
+
"indices": [
|
| 148 |
+
23,
|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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31,
|
| 157 |
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|
| 158 |
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33
|
| 159 |
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]
|
| 160 |
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},
|
| 161 |
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"cdr2": {
|
| 162 |
+
"indices": [
|
| 163 |
+
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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]
|
| 171 |
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},
|
| 172 |
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"cdr3": {
|
| 173 |
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"indices": [
|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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]
|
| 184 |
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}
|
| 185 |
+
}
|
| 186 |
+
}
|
| 187 |
+
}
|
cdr_info/8yx9_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8yx9_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "H",
|
| 8 |
+
"B": "L",
|
| 9 |
+
"C": "A"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"H": "A",
|
| 13 |
+
"L": "B",
|
| 14 |
+
"A": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "H",
|
| 20 |
+
"seq_len": 223,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "L",
|
| 26 |
+
"seq_len": 219,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "A",
|
| 32 |
+
"seq_len": 179,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
+
27,
|
| 43 |
+
28,
|
| 44 |
+
29,
|
| 45 |
+
30,
|
| 46 |
+
31,
|
| 47 |
+
51,
|
| 48 |
+
52,
|
| 49 |
+
53,
|
| 50 |
+
54,
|
| 51 |
+
55,
|
| 52 |
+
56,
|
| 53 |
+
98,
|
| 54 |
+
99,
|
| 55 |
+
100,
|
| 56 |
+
101,
|
| 57 |
+
102
|
| 58 |
+
],
|
| 59 |
+
"variable_domain_start_res_id": 1,
|
| 60 |
+
"cdr1": {
|
| 61 |
+
"indices": [
|
| 62 |
+
25,
|
| 63 |
+
26,
|
| 64 |
+
27,
|
| 65 |
+
28,
|
| 66 |
+
29,
|
| 67 |
+
30,
|
| 68 |
+
31
|
| 69 |
+
]
|
| 70 |
+
},
|
| 71 |
+
"cdr2": {
|
| 72 |
+
"indices": [
|
| 73 |
+
51,
|
| 74 |
+
52,
|
| 75 |
+
53,
|
| 76 |
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54,
|
| 77 |
+
55,
|
| 78 |
+
56
|
| 79 |
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]
|
| 80 |
+
},
|
| 81 |
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"cdr3": {
|
| 82 |
+
"indices": [
|
| 83 |
+
98,
|
| 84 |
+
99,
|
| 85 |
+
100,
|
| 86 |
+
101,
|
| 87 |
+
102
|
| 88 |
+
]
|
| 89 |
+
}
|
| 90 |
+
},
|
| 91 |
+
"L_chain": {
|
| 92 |
+
"cdr_indices": [
|
| 93 |
+
22,
|
| 94 |
+
23,
|
| 95 |
+
24,
|
| 96 |
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25,
|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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97,
|
| 122 |
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98,
|
| 123 |
+
99,
|
| 124 |
+
100,
|
| 125 |
+
101
|
| 126 |
+
],
|
| 127 |
+
"variable_domain_start_res_id": 1,
|
| 128 |
+
"cdr1": {
|
| 129 |
+
"indices": [
|
| 130 |
+
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|
| 131 |
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23,
|
| 132 |
+
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|
| 133 |
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|
| 134 |
+
26,
|
| 135 |
+
27,
|
| 136 |
+
28,
|
| 137 |
+
29,
|
| 138 |
+
30,
|
| 139 |
+
31,
|
| 140 |
+
32,
|
| 141 |
+
33,
|
| 142 |
+
34,
|
| 143 |
+
35,
|
| 144 |
+
36,
|
| 145 |
+
37
|
| 146 |
+
]
|
| 147 |
+
},
|
| 148 |
+
"cdr2": {
|
| 149 |
+
"indices": [
|
| 150 |
+
53,
|
| 151 |
+
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|
| 152 |
+
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|
| 153 |
+
56,
|
| 154 |
+
57,
|
| 155 |
+
58,
|
| 156 |
+
59
|
| 157 |
+
]
|
| 158 |
+
},
|
| 159 |
+
"cdr3": {
|
| 160 |
+
"indices": [
|
| 161 |
+
92,
|
| 162 |
+
93,
|
| 163 |
+
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|
| 164 |
+
95,
|
| 165 |
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|
| 166 |
+
97,
|
| 167 |
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98,
|
| 168 |
+
99,
|
| 169 |
+
100,
|
| 170 |
+
101
|
| 171 |
+
]
|
| 172 |
+
}
|
| 173 |
+
}
|
| 174 |
+
}
|
| 175 |
+
}
|
cdr_info/8yz5_G_K_D_cdr_info.json
ADDED
|
@@ -0,0 +1,173 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8yz5_G_K_D",
|
| 3 |
+
"heavy_chain_id": "G",
|
| 4 |
+
"light_chain_id": "K",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "D",
|
| 8 |
+
"B": "G",
|
| 9 |
+
"C": "K"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"D": "A",
|
| 13 |
+
"G": "B",
|
| 14 |
+
"K": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "D",
|
| 20 |
+
"seq_len": 1259,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "G",
|
| 26 |
+
"seq_len": 119,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "K",
|
| 32 |
+
"seq_len": 107,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
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25,
|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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"variable_domain_start_res_id": 1,
|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
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| 73 |
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| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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| 79 |
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| 82 |
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|
| 83 |
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|
| 84 |
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| 85 |
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|
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
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|
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|
| 129 |
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|
| 130 |
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|
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|
| 132 |
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|
| 133 |
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|
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|
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|
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|
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|
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|
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
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|
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|
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|
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|
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|
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|
| 158 |
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|
| 159 |
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|
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|
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|
| 171 |
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|
| 172 |
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}
|
| 173 |
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}
|
cdr_info/8zby_H_D_A_cdr_info.json
ADDED
|
@@ -0,0 +1,197 @@
|
|
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|
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|
|
|
|
|
|
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|
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|
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|
|
|
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|
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|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
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|
|
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|
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|
|
|
|
|
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|
|
|
|
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|
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|
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|
|
|
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|
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|
| 1 |
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{
|
| 2 |
+
"entry_name": "8zby_H_D_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "D",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "A",
|
| 8 |
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"B": "H",
|
| 9 |
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"C": "D"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"A": "A",
|
| 13 |
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"H": "B",
|
| 14 |
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"D": "C"
|
| 15 |
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},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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"original_chain": "A",
|
| 20 |
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"seq_len": 1240,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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"protenix_chain": "B",
|
| 25 |
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"original_chain": "H",
|
| 26 |
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"seq_len": 230,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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"original_chain": "D",
|
| 32 |
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"seq_len": 223,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
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|
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|
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|
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|
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|
| 59 |
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|
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|
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|
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|
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|
| 64 |
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|
| 65 |
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|
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|
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|
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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"variable_domain_start_res_id": 1,
|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
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|
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|
| 79 |
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|
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|
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
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|
| 93 |
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| 94 |
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| 95 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 164 |
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|
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|
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
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|
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|
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|
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|
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|
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
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|
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|
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|
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|
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|
| 189 |
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|
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|
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|
| 192 |
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|
| 193 |
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|
| 194 |
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|
| 195 |
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}
|
| 196 |
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|
| 197 |
+
}
|
cdr_info/9axl_H_L_B_cdr_info.json
ADDED
|
@@ -0,0 +1,183 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
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|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
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|
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|
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|
|
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|
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|
|
|
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|
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|
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|
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|
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|
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|
|
|
|
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|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "9axl_H_L_B",
|
| 3 |
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|
| 4 |
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|
| 5 |
+
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|
| 6 |
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|
| 7 |
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"A": "B",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"B": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
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},
|
| 16 |
+
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|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
"original_chain": "B",
|
| 20 |
+
"seq_len": 788,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
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|
| 27 |
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|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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|
| 32 |
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"seq_len": 213,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
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|
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|
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|
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|
| 55 |
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|
| 56 |
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|
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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| 75 |
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|
| 76 |
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| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
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| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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| 92 |
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|
| 93 |
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|
| 94 |
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|
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|
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
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|
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|
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|
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|
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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| 146 |
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|
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|
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|
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|
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|
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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"cdr2": {
|
| 158 |
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|
| 159 |
+
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
+
}
|
| 182 |
+
}
|
| 183 |
+
}
|
cdr_info/9b9y_N__R_cdr_info.json
ADDED
|
@@ -0,0 +1,100 @@
|
|
|
|
|
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|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "9b9y_N__R",
|
| 3 |
+
"heavy_chain_id": "N",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "R",
|
| 8 |
+
"B": "N"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"R": "A",
|
| 12 |
+
"N": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "R",
|
| 18 |
+
"seq_len": 535,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "N",
|
| 24 |
+
"seq_len": 128,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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97,
|
| 45 |
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98,
|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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29,
|
| 67 |
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30,
|
| 68 |
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31
|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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107,
|
| 93 |
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108,
|
| 94 |
+
109,
|
| 95 |
+
110
|
| 96 |
+
]
|
| 97 |
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}
|
| 98 |
+
}
|
| 99 |
+
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|
| 100 |
+
}
|
cdr_info/9bia_E__BD_cdr_info.json
ADDED
|
@@ -0,0 +1,104 @@
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
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|
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|
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|
|
|
|
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|
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|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "9bia_E__BD",
|
| 3 |
+
"heavy_chain_id": "E",
|
| 4 |
+
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|
| 5 |
+
"chain_mapping": {
|
| 6 |
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|
| 7 |
+
"A": "B",
|
| 8 |
+
"B": "D",
|
| 9 |
+
"C": "E"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"B": "A",
|
| 13 |
+
"D": "B",
|
| 14 |
+
"E": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "B",
|
| 20 |
+
"seq_len": 170,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "D",
|
| 26 |
+
"seq_len": 170,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "E",
|
| 32 |
+
"seq_len": 140,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
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26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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101,
|
| 57 |
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102,
|
| 58 |
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|
| 59 |
+
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|
| 60 |
+
105,
|
| 61 |
+
106,
|
| 62 |
+
107,
|
| 63 |
+
108
|
| 64 |
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],
|
| 65 |
+
"variable_domain_start_res_id": 1,
|
| 66 |
+
"cdr1": {
|
| 67 |
+
"indices": [
|
| 68 |
+
25,
|
| 69 |
+
26,
|
| 70 |
+
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|
| 71 |
+
28,
|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
+
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|
| 76 |
+
33,
|
| 77 |
+
34
|
| 78 |
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|
| 79 |
+
},
|
| 80 |
+
"cdr2": {
|
| 81 |
+
"indices": [
|
| 82 |
+
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|
| 83 |
+
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|
| 84 |
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|
| 85 |
+
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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"cdr3": {
|
| 91 |
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"indices": [
|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
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|
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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}
|
| 103 |
+
}
|
| 104 |
+
}
|
cdr_info/9ctu_D_C_A_cdr_info.json
ADDED
|
@@ -0,0 +1,169 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "9ctu_D_C_A",
|
| 3 |
+
"heavy_chain_id": "D",
|
| 4 |
+
"light_chain_id": "C",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
+
"A": "C",
|
| 8 |
+
"B": "D",
|
| 9 |
+
"C": "A"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"C": "A",
|
| 13 |
+
"D": "B",
|
| 14 |
+
"A": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
"original_chain": "C",
|
| 20 |
+
"seq_len": 238,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "D",
|
| 26 |
+
"seq_len": 255,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "A",
|
| 32 |
+
"seq_len": 231,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
+
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|
| 41 |
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26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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56,
|
| 53 |
+
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|
| 54 |
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|
| 55 |
+
100,
|
| 56 |
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|
| 57 |
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],
|
| 58 |
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"variable_domain_start_res_id": 20,
|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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29,
|
| 66 |
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30,
|
| 67 |
+
31
|
| 68 |
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]
|
| 69 |
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},
|
| 70 |
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"cdr2": {
|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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54,
|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
+
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|
| 83 |
+
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|
| 84 |
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100,
|
| 85 |
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101
|
| 86 |
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|
| 87 |
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}
|
| 88 |
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},
|
| 89 |
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"L_chain": {
|
| 90 |
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"cdr_indices": [
|
| 91 |
+
23,
|
| 92 |
+
24,
|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
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|
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|
| 106 |
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|
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
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|
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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37
|
| 141 |
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|
| 142 |
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},
|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
+
100
|
| 165 |
+
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|
| 166 |
+
}
|
| 167 |
+
}
|
| 168 |
+
}
|
| 169 |
+
}
|
cdr_info/9df0_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "9df0_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 1166,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 118,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 111,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
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26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
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|
| 51 |
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|
| 52 |
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|
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|
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|
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|
| 56 |
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|
| 57 |
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|
| 58 |
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103,
|
| 59 |
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104,
|
| 60 |
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105,
|
| 61 |
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106
|
| 62 |
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],
|
| 63 |
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"variable_domain_start_res_id": 1,
|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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26,
|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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31,
|
| 73 |
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32,
|
| 74 |
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33
|
| 75 |
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]
|
| 76 |
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},
|
| 77 |
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|
| 78 |
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|
| 79 |
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53,
|
| 80 |
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54,
|
| 81 |
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|
| 82 |
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56,
|
| 83 |
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|
| 84 |
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|
| 85 |
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},
|
| 86 |
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|
| 87 |
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|
| 88 |
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99,
|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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106
|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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"L_chain": {
|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
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|
| 109 |
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|
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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"variable_domain_start_res_id": 1,
|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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33,
|
| 149 |
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34,
|
| 150 |
+
35
|
| 151 |
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]
|
| 152 |
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},
|
| 153 |
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"cdr2": {
|
| 154 |
+
"indices": [
|
| 155 |
+
51,
|
| 156 |
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52,
|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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56,
|
| 161 |
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57
|
| 162 |
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]
|
| 163 |
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},
|
| 164 |
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"cdr3": {
|
| 165 |
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"indices": [
|
| 166 |
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90,
|
| 167 |
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91,
|
| 168 |
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92,
|
| 169 |
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93,
|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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98,
|
| 175 |
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|
| 176 |
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100
|
| 177 |
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]
|
| 178 |
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}
|
| 179 |
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}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/9fzc_C__A_cdr_info.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
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|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "9fzc_C__A",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
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"A": "A",
|
| 8 |
+
"B": "C"
|
| 9 |
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},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"A": "A",
|
| 12 |
+
"C": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
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{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "A",
|
| 18 |
+
"seq_len": 173,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "C",
|
| 24 |
+
"seq_len": 123,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
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25,
|
| 33 |
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26,
|
| 34 |
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27,
|
| 35 |
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28,
|
| 36 |
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|
| 37 |
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|
| 38 |
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31,
|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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103,
|
| 51 |
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104,
|
| 52 |
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105,
|
| 53 |
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106,
|
| 54 |
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107,
|
| 55 |
+
108
|
| 56 |
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],
|
| 57 |
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"variable_domain_start_res_id": 4,
|
| 58 |
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"cdr1": {
|
| 59 |
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"indices": [
|
| 60 |
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25,
|
| 61 |
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26,
|
| 62 |
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27,
|
| 63 |
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28,
|
| 64 |
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29,
|
| 65 |
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30,
|
| 66 |
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31,
|
| 67 |
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32,
|
| 68 |
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33
|
| 69 |
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]
|
| 70 |
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},
|
| 71 |
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"cdr2": {
|
| 72 |
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"indices": [
|
| 73 |
+
53,
|
| 74 |
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54,
|
| 75 |
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55,
|
| 76 |
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|
| 77 |
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57
|
| 78 |
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]
|
| 79 |
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},
|
| 80 |
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"cdr3": {
|
| 81 |
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"indices": [
|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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108
|
| 92 |
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]
|
| 93 |
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}
|
| 94 |
+
}
|
| 95 |
+
}
|
| 96 |
+
}
|
protenix_json/7vgs_D_C_A.json
ADDED
|
@@ -0,0 +1,80 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
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|
|
|
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|
|
|
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|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
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{
|
| 3 |
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"sequences": [
|
| 4 |
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{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "MHHHHHHHHDYKDDDDKENLYFQGMADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ",
|
| 7 |
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"count": 1,
|
| 8 |
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"label_entity_id": "1",
|
| 9 |
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"label_asym_id": [
|
| 10 |
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"A"
|
| 11 |
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],
|
| 12 |
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"auth_asym_id": [
|
| 13 |
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"A"
|
| 14 |
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]
|
| 15 |
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}
|
| 16 |
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},
|
| 17 |
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{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "DIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC",
|
| 20 |
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"count": 1,
|
| 21 |
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"label_entity_id": "2",
|
| 22 |
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"label_asym_id": [
|
| 23 |
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"B"
|
| 24 |
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],
|
| 25 |
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"auth_asym_id": [
|
| 26 |
+
"C"
|
| 27 |
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]
|
| 28 |
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}
|
| 29 |
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},
|
| 30 |
+
{
|
| 31 |
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"proteinChain": {
|
| 32 |
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"sequence": "EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSS",
|
| 33 |
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"count": 1,
|
| 34 |
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"label_entity_id": "3",
|
| 35 |
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"label_asym_id": [
|
| 36 |
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"C"
|
| 37 |
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],
|
| 38 |
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"auth_asym_id": [
|
| 39 |
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"D"
|
| 40 |
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]
|
| 41 |
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}
|
| 42 |
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}
|
| 43 |
+
],
|
| 44 |
+
"covalent_bonds": [
|
| 45 |
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{
|
| 46 |
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"entity1": 2,
|
| 47 |
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"position1": 23,
|
| 48 |
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"atom1": "SG",
|
| 49 |
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"entity2": 2,
|
| 50 |
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"position2": 92,
|
| 51 |
+
"atom2": "SG"
|
| 52 |
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|
| 53 |
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{
|
| 54 |
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"entity1": 2,
|
| 55 |
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|
| 56 |
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|
| 57 |
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"entity2": 2,
|
| 58 |
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"position2": 198,
|
| 59 |
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"atom2": "SG"
|
| 60 |
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|
| 61 |
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{
|
| 62 |
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"entity1": 3,
|
| 63 |
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"position1": 22,
|
| 64 |
+
"atom1": "SG",
|
| 65 |
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|
| 66 |
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"position2": 96,
|
| 67 |
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"atom2": "SG"
|
| 68 |
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|
| 69 |
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{
|
| 70 |
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"entity1": 3,
|
| 71 |
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|
| 72 |
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"atom1": "SG",
|
| 73 |
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"entity2": 3,
|
| 74 |
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"position2": 195,
|
| 75 |
+
"atom2": "SG"
|
| 76 |
+
}
|
| 77 |
+
],
|
| 78 |
+
"name": "7vgs_D_C_A"
|
| 79 |
+
}
|
| 80 |
+
]
|
protenix_json/8euq_C_D_AB.json
ADDED
|
@@ -0,0 +1,117 @@
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "EEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDTSGENLYFQ",
|
| 7 |
+
"count": 1,
|
| 8 |
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"label_entity_id": "1",
|
| 9 |
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"label_asym_id": [
|
| 10 |
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"A"
|
| 11 |
+
],
|
| 12 |
+
"auth_asym_id": [
|
| 13 |
+
"A"
|
| 14 |
+
]
|
| 15 |
+
}
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "DIQMTQSPSSLSASLGQRVSLTCRASQEISGYLTWLQQKPDGTIKRLVYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYTNYPLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC",
|
| 20 |
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"count": 1,
|
| 21 |
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"label_entity_id": "2",
|
| 22 |
+
"label_asym_id": [
|
| 23 |
+
"B"
|
| 24 |
+
],
|
| 25 |
+
"auth_asym_id": [
|
| 26 |
+
"D"
|
| 27 |
+
]
|
| 28 |
+
}
|
| 29 |
+
},
|
| 30 |
+
{
|
| 31 |
+
"proteinChain": {
|
| 32 |
+
"sequence": "GAPKYVKQNTLKLATSGGSGSIEGRGSGDTRPRFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTSPLTVEWRATGGENLYFQ",
|
| 33 |
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"count": 1,
|
| 34 |
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"label_entity_id": "3",
|
| 35 |
+
"label_asym_id": [
|
| 36 |
+
"E"
|
| 37 |
+
],
|
| 38 |
+
"auth_asym_id": [
|
| 39 |
+
"B"
|
| 40 |
+
]
|
| 41 |
+
}
|
| 42 |
+
},
|
| 43 |
+
{
|
| 44 |
+
"proteinChain": {
|
| 45 |
+
"sequence": "QVQLKESGPGLVAPSQSLSITCTVSGFSLTSYGVHWVRQPPGKGLEWLGVIWAGGSINYNSALMSRLSISKDNFKSQVFLKMSSLQTDDTAMYYCARAYGDYVHYAMDYWGQGTSVTASSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC",
|
| 46 |
+
"count": 1,
|
| 47 |
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"label_entity_id": "4",
|
| 48 |
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"label_asym_id": [
|
| 49 |
+
"F"
|
| 50 |
+
],
|
| 51 |
+
"auth_asym_id": [
|
| 52 |
+
"C"
|
| 53 |
+
]
|
| 54 |
+
}
|
| 55 |
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}
|
| 56 |
+
],
|
| 57 |
+
"covalent_bonds": [
|
| 58 |
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{
|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
+
"position2": 161,
|
| 64 |
+
"atom2": "SG"
|
| 65 |
+
},
|
| 66 |
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{
|
| 67 |
+
"entity1": 2,
|
| 68 |
+
"position1": 23,
|
| 69 |
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"atom1": "SG",
|
| 70 |
+
"entity2": 2,
|
| 71 |
+
"position2": 88,
|
| 72 |
+
"atom2": "SG"
|
| 73 |
+
},
|
| 74 |
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{
|
| 75 |
+
"entity1": 2,
|
| 76 |
+
"position1": 134,
|
| 77 |
+
"atom1": "SG",
|
| 78 |
+
"entity2": 2,
|
| 79 |
+
"position2": 194,
|
| 80 |
+
"atom2": "SG"
|
| 81 |
+
},
|
| 82 |
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{
|
| 83 |
+
"entity1": 3,
|
| 84 |
+
"position1": 42,
|
| 85 |
+
"atom1": "SG",
|
| 86 |
+
"entity2": 3,
|
| 87 |
+
"position2": 106,
|
| 88 |
+
"atom2": "SG"
|
| 89 |
+
},
|
| 90 |
+
{
|
| 91 |
+
"entity1": 3,
|
| 92 |
+
"position1": 144,
|
| 93 |
+
"atom1": "SG",
|
| 94 |
+
"entity2": 3,
|
| 95 |
+
"position2": 200,
|
| 96 |
+
"atom2": "SG"
|
| 97 |
+
},
|
| 98 |
+
{
|
| 99 |
+
"entity1": 4,
|
| 100 |
+
"position1": 22,
|
| 101 |
+
"atom1": "SG",
|
| 102 |
+
"entity2": 4,
|
| 103 |
+
"position2": 95,
|
| 104 |
+
"atom2": "SG"
|
| 105 |
+
},
|
| 106 |
+
{
|
| 107 |
+
"entity1": 4,
|
| 108 |
+
"position1": 147,
|
| 109 |
+
"atom1": "SG",
|
| 110 |
+
"entity2": 4,
|
| 111 |
+
"position2": 203,
|
| 112 |
+
"atom2": "SG"
|
| 113 |
+
}
|
| 114 |
+
],
|
| 115 |
+
"name": "8euq_C_D_AB"
|
| 116 |
+
}
|
| 117 |
+
]
|
protenix_json/8q94_C__A.json
ADDED
|
@@ -0,0 +1,67 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "EGSNLCPFDEVFDATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLSFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLQSYGFRPTYGVGHQPYRVVVLSFEL",
|
| 7 |
+
"count": 1,
|
| 8 |
+
"label_entity_id": "1",
|
| 9 |
+
"label_asym_id": [
|
| 10 |
+
"A"
|
| 11 |
+
],
|
| 12 |
+
"auth_asym_id": [
|
| 13 |
+
"A"
|
| 14 |
+
]
|
| 15 |
+
}
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "GSQVQLVESGGGLVQPGGSLRLSCAISGITLDYYAVGWFLQAPGKEREGISCMRNWDGRTVYAPSVKGRFTISSDNAKKMVYLEMDNLKSEDTGVYYCAAGPLPPGISCRIPTPLGYDDWGQGTQVTVSSTS",
|
| 20 |
+
"count": 1,
|
| 21 |
+
"label_entity_id": "3",
|
| 22 |
+
"label_asym_id": [
|
| 23 |
+
"C"
|
| 24 |
+
],
|
| 25 |
+
"auth_asym_id": [
|
| 26 |
+
"C"
|
| 27 |
+
]
|
| 28 |
+
}
|
| 29 |
+
}
|
| 30 |
+
],
|
| 31 |
+
"covalent_bonds": [
|
| 32 |
+
{
|
| 33 |
+
"entity1": 1,
|
| 34 |
+
"position1": 6,
|
| 35 |
+
"atom1": "SG",
|
| 36 |
+
"entity2": 1,
|
| 37 |
+
"position2": 31,
|
| 38 |
+
"atom2": "SG"
|
| 39 |
+
},
|
| 40 |
+
{
|
| 41 |
+
"entity1": 1,
|
| 42 |
+
"position1": 150,
|
| 43 |
+
"atom1": "SG",
|
| 44 |
+
"entity2": 1,
|
| 45 |
+
"position2": 158,
|
| 46 |
+
"atom2": "SG"
|
| 47 |
+
},
|
| 48 |
+
{
|
| 49 |
+
"entity1": 2,
|
| 50 |
+
"position1": 24,
|
| 51 |
+
"atom1": "SG",
|
| 52 |
+
"entity2": 2,
|
| 53 |
+
"position2": 98,
|
| 54 |
+
"atom2": "SG"
|
| 55 |
+
},
|
| 56 |
+
{
|
| 57 |
+
"entity1": 2,
|
| 58 |
+
"position1": 52,
|
| 59 |
+
"atom1": "SG",
|
| 60 |
+
"entity2": 2,
|
| 61 |
+
"position2": 109,
|
| 62 |
+
"atom2": "SG"
|
| 63 |
+
}
|
| 64 |
+
],
|
| 65 |
+
"name": "8q94_C__A"
|
| 66 |
+
}
|
| 67 |
+
]
|
protenix_json/8qot_B__A.json
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "MKTIIALSYIFCLVFADYKDDDDAMGPGNISDCSDPLAPASCSPAPGSWLNLSHVDGNQSDPCGPNRTGLGENLYFQGSHSLCPQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPTSSTILEVLFQGPEQQNSARIRQNTREHPSTANTVDRTNHQLENLEAETAPLPSSLAEENLYFQSWSHPQFEKGGGSGGGSGGGSWSHPQFEKGAHHHHHHHH",
|
| 7 |
+
"count": 1,
|
| 8 |
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"label_entity_id": "1",
|
| 9 |
+
"label_asym_id": [
|
| 10 |
+
"A"
|
| 11 |
+
],
|
| 12 |
+
"auth_asym_id": [
|
| 13 |
+
"A"
|
| 14 |
+
]
|
| 15 |
+
}
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "VKKLLFAIPLVVPFYAAQPAMAQVQLVESGGGLVQAGGSLRLSCAASGSISSISTMGWYRQAPGKERELVAAITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNFKYYSGSYFYKSEYDYWGKGTPVTVSSAAAHHHHHHGAAEQKLISEEDLNGAA",
|
| 20 |
+
"count": 1,
|
| 21 |
+
"label_entity_id": "2",
|
| 22 |
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"label_asym_id": [
|
| 23 |
+
"B"
|
| 24 |
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],
|
| 25 |
+
"auth_asym_id": [
|
| 26 |
+
"B"
|
| 27 |
+
]
|
| 28 |
+
}
|
| 29 |
+
}
|
| 30 |
+
],
|
| 31 |
+
"covalent_bonds": [
|
| 32 |
+
{
|
| 33 |
+
"entity1": 1,
|
| 34 |
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"position1": 166,
|
| 35 |
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"atom1": "SG",
|
| 36 |
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"entity2": 1,
|
| 37 |
+
"position2": 243,
|
| 38 |
+
"atom2": "SG"
|
| 39 |
+
},
|
| 40 |
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{
|
| 41 |
+
"entity1": 2,
|
| 42 |
+
"position1": 44,
|
| 43 |
+
"atom1": "SG",
|
| 44 |
+
"entity2": 2,
|
| 45 |
+
"position2": 117,
|
| 46 |
+
"atom2": "SG"
|
| 47 |
+
}
|
| 48 |
+
],
|
| 49 |
+
"name": "8qot_B__A"
|
| 50 |
+
}
|
| 51 |
+
]
|
protenix_json/8qz6_B__A.json
ADDED
|
@@ -0,0 +1,43 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "MAGILAWFWNERFWLPHNVTWADLKNTEEATFPQAEDLYLAFPLAFCIFMVRLIFERFVAKPCAIALNIQANGPQIAPPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSTLTRFCESMWRFSFYLYVFTYGVRFLKKTPWLWNTRHCWYNYPYQPLTTDLHYYYILELSFYWSLMFSQFTDIKRKDFGIMFLHHLVSIFLITFSYVNNMARVGTLVLCLHDSADALLEAAKMANYAKFQKMCDLLFVMFAVVFITTRLGIFPLWVLNTTLFESWEIVGPYPSWWVFNLLLLLVQGLNCFWSYLIVKIACKAVSRGKAGKWNPLHVSKDDRSDAENLYFQ",
|
| 7 |
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"count": 1,
|
| 8 |
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"label_entity_id": "1",
|
| 9 |
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"label_asym_id": [
|
| 10 |
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"A"
|
| 11 |
+
],
|
| 12 |
+
"auth_asym_id": [
|
| 13 |
+
"A"
|
| 14 |
+
]
|
| 15 |
+
}
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "QVQLVESGGGLVQAEGSLRLSCAASGRTFRTYGMGWFRQAPGKEREFVAALNWSGSSTYYADSVKGRFTISRDNAKNTAYLQMNSLKPEDTAVYYCAALRRKAEYGSRSIADFDSWSKGTPVTVSSHHHHHHEPEA",
|
| 20 |
+
"count": 1,
|
| 21 |
+
"label_entity_id": "2",
|
| 22 |
+
"label_asym_id": [
|
| 23 |
+
"B"
|
| 24 |
+
],
|
| 25 |
+
"auth_asym_id": [
|
| 26 |
+
"B"
|
| 27 |
+
]
|
| 28 |
+
}
|
| 29 |
+
}
|
| 30 |
+
],
|
| 31 |
+
"covalent_bonds": [
|
| 32 |
+
{
|
| 33 |
+
"entity1": 2,
|
| 34 |
+
"position1": 22,
|
| 35 |
+
"atom1": "SG",
|
| 36 |
+
"entity2": 2,
|
| 37 |
+
"position2": 96,
|
| 38 |
+
"atom2": "SG"
|
| 39 |
+
}
|
| 40 |
+
],
|
| 41 |
+
"name": "8qz6_B__A"
|
| 42 |
+
}
|
| 43 |
+
]
|
protenix_json/8qz7_B__A.json
ADDED
|
@@ -0,0 +1,43 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "MAGILAWFWNERFWLPHNVTWADLKNTEEATFPQAEDLYLAFPLAFCIFMVRLIFERFVAKPCAIALNIQANGPQIAPPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSTLTRFCESMWRFSFYLYVFTYGVRFLKKTPWLWNTRHCWYNYPYQPLTTDLHYYYILELSFYWSLMFSQFTDIKRKDFGIMFLHHLVSIFLITFSYVNNMARVGTLVLCLHDSADALLEAAKMANYAKFQKMCDLLFVMFAVVFITTRLGIFPLWVLNTTLFESWEIVGPYPSWWVFNLLLLLVQGLNCFWSYLIVKIACKAVSRGKAGKWNPLHVSKDDRSDAENLYFQ",
|
| 7 |
+
"count": 1,
|
| 8 |
+
"label_entity_id": "1",
|
| 9 |
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"label_asym_id": [
|
| 10 |
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"A"
|
| 11 |
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],
|
| 12 |
+
"auth_asym_id": [
|
| 13 |
+
"A"
|
| 14 |
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]
|
| 15 |
+
}
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "QVQLVESGGGLVQAEGSLRLSCAASGRTFRTYGMGWFRQAPGKEREFVAALNWSGSSTYYADSVKGRFTISRDNAKNTAYLQMNSLKPEDTAVYYCAALRRKAEYGSRSIADFDSWSKGTPVTVSSHHHHHHEPEA",
|
| 20 |
+
"count": 1,
|
| 21 |
+
"label_entity_id": "2",
|
| 22 |
+
"label_asym_id": [
|
| 23 |
+
"B"
|
| 24 |
+
],
|
| 25 |
+
"auth_asym_id": [
|
| 26 |
+
"B"
|
| 27 |
+
]
|
| 28 |
+
}
|
| 29 |
+
}
|
| 30 |
+
],
|
| 31 |
+
"covalent_bonds": [
|
| 32 |
+
{
|
| 33 |
+
"entity1": 2,
|
| 34 |
+
"position1": 22,
|
| 35 |
+
"atom1": "SG",
|
| 36 |
+
"entity2": 2,
|
| 37 |
+
"position2": 96,
|
| 38 |
+
"atom2": "SG"
|
| 39 |
+
}
|
| 40 |
+
],
|
| 41 |
+
"name": "8qz7_B__A"
|
| 42 |
+
}
|
| 43 |
+
]
|
protenix_json/8r4b_B__A.json
ADDED
|
@@ -0,0 +1,43 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "GAMGSMSDLDVIRQIEQELGMQLEPVDKLKWYSKGYKLDKDQRVTAIGLYDCGSDTLDRIIQPLESLKSLSELSLSSNQITDISPLASLNSLSMLWLDRNQITDIAPLASLNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITDIAPLASLKSLTELSLSGNNISDIAPLESLKSLTELSLSSNQITDIAPLASLKSLTELSLSSNQISDIAPLESLKSLTELQLSRNQISDIAPLESLKSLTELQLSSNQITDIAPLASLKSLTELQLSRNQISDIAPLESLNSLSKLWLNGNQITDIAPLASLNSLTELELSSNQITDIAPLASLKSLSTLWLSSNQISDIAPLASLESLSELSLSSNQISDISPLASLNSLTGFDVRRNPIKRLPETITGFDMEILWNDFSSSGFITFFDNPLESPPPEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIYGTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEALDLSEIYVLDPHWVTIGVYRIINSSKTKNGHLNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEGKGLFIIPSNLPTQIDNEPEITEGEPLRFIMKYDYLPSTIIPRLMIAMQHQILDRMQWRYGMVLKSQDHEGALAKVVAETKDSTITIAIQGEPRCKREYLSIIWYEIKKINANFTNLDVKEFIPLPGHPDELVEYKELLGLEKMGRDEYVSGKLEKVFSVSKMLDSVISKEERNKERLMGDINIKLENIGNPTIPIHQQVEVNVSQETVQHVENLQGFFENLKADILREAELEIDDPKERKRLANELELAENAITKMDAAVKSGKNKLKPDVKDRLGEFIDNLANENSRLRKGIALVMNGAEKVQKLARYYNNVAPFFDLPSVPPVLLGKEKT",
|
| 7 |
+
"count": 1,
|
| 8 |
+
"label_entity_id": "1",
|
| 9 |
+
"label_asym_id": [
|
| 10 |
+
"A"
|
| 11 |
+
],
|
| 12 |
+
"auth_asym_id": [
|
| 13 |
+
"A"
|
| 14 |
+
]
|
| 15 |
+
}
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "QVQLQESGGGLVQAGGSLRLSCANSGLTFSTYTMGWFRQAPGKEREFVAAIRWSGTSTYYQDHADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAASRLRAGVKAPSEYDYWGQGTQVTVSSHHHHHHEPEA",
|
| 20 |
+
"count": 1,
|
| 21 |
+
"label_entity_id": "2",
|
| 22 |
+
"label_asym_id": [
|
| 23 |
+
"B"
|
| 24 |
+
],
|
| 25 |
+
"auth_asym_id": [
|
| 26 |
+
"B"
|
| 27 |
+
]
|
| 28 |
+
}
|
| 29 |
+
}
|
| 30 |
+
],
|
| 31 |
+
"covalent_bonds": [
|
| 32 |
+
{
|
| 33 |
+
"entity1": 2,
|
| 34 |
+
"position1": 22,
|
| 35 |
+
"atom1": "SG",
|
| 36 |
+
"entity2": 2,
|
| 37 |
+
"position2": 99,
|
| 38 |
+
"atom2": "SG"
|
| 39 |
+
}
|
| 40 |
+
],
|
| 41 |
+
"name": "8r4b_B__A"
|
| 42 |
+
}
|
| 43 |
+
]
|
protenix_json/8r4d_B__A.json
ADDED
|
@@ -0,0 +1,43 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "GAMGSMSDLDVIRQIEQELGMQLEPVDKLKWYSKGYKLDKDQRVTAIGLYDCGSDTLDRIIQPLESLKSLSELSLSSNQITDISPLASLNSLSMLWLDRNQITDIAPLASLNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITDIAPLASLKSLTELSLSGNNISDIAPLESLKSLTELSLSSNQITDIAPLASLKSLTELSLSSNQISDIAPLESLKSLTELQLSRNQISDIAPLESLKSLTELQLSSNQITDIAPLASLKSLTELQLSRNQISDIAPLESLNSLSKLWLNGNQITDIAPLASLNSLTELELSSNQITDIAPLASLKSLSTLWLSSNQISDIAPLASLESLSELSLSSNQISDISPLASLNSLTGFDVRRNPIKRLPETITGFDMEILWNDFSSSGFITFFDNPLESPPPEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIYGTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEALDLSEIYVLDPHWVTIGVYRIINSSKTKNGHLNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEGKGLFIIPSNLPTQIDNEPEITEGEPLRFIMKYDYLPSTIIPRLMIAMQHQILDRMQWRYGMVLKSQDHEGALAKVVAETKDSTITIAIQGEPRCKREYLSIIWYEIKKINANFTNLDVKEFIPLPGHPDELVEYKELLGLEKMGRDEYVSGKLEKVFSVSKMLDSVISKEERNKERLMGDINIKLENIGNPTIPIHQQVEVNVSQETVQHVENLQGFFENLKADILREAELEIDDPKERKRLANELELAENAITKMDAAVKSGKNKLKPDVKDRLGEFIDNLANENSRLRKGIALVMNGAEKVQKLARYYNNVAPFFDLPSVPPVLLGKEKT",
|
| 7 |
+
"count": 1,
|
| 8 |
+
"label_entity_id": "1",
|
| 9 |
+
"label_asym_id": [
|
| 10 |
+
"A"
|
| 11 |
+
],
|
| 12 |
+
"auth_asym_id": [
|
| 13 |
+
"A"
|
| 14 |
+
]
|
| 15 |
+
}
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "QVQLQESGGGLVQAGGSLRLSCANSGLTFSTYTMGWFRQAPGKEREFVAAIRWSGTSTYYQDHADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAASRLRAGVKAPSEYDYWGQGTQVTVSSHHHHHHEPEA",
|
| 20 |
+
"count": 1,
|
| 21 |
+
"label_entity_id": "2",
|
| 22 |
+
"label_asym_id": [
|
| 23 |
+
"B"
|
| 24 |
+
],
|
| 25 |
+
"auth_asym_id": [
|
| 26 |
+
"B"
|
| 27 |
+
]
|
| 28 |
+
}
|
| 29 |
+
}
|
| 30 |
+
],
|
| 31 |
+
"covalent_bonds": [
|
| 32 |
+
{
|
| 33 |
+
"entity1": 2,
|
| 34 |
+
"position1": 22,
|
| 35 |
+
"atom1": "SG",
|
| 36 |
+
"entity2": 2,
|
| 37 |
+
"position2": 99,
|
| 38 |
+
"atom2": "SG"
|
| 39 |
+
}
|
| 40 |
+
],
|
| 41 |
+
"name": "8r4d_B__A"
|
| 42 |
+
}
|
| 43 |
+
]
|
protenix_json/8r8k_H_L_A.json
ADDED
|
@@ -0,0 +1,104 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "MFVFLVLLPLVSSQCVNLITRTQSYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLGRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYQYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICASYQTQTKSHRRARSVASQSIIAYTMSLGAENLVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHGSAWSHPQFEKGGGSGGGSGGSAWSHPQFEK",
|
| 7 |
+
"count": 1,
|
| 8 |
+
"label_entity_id": "1",
|
| 9 |
+
"label_asym_id": [
|
| 10 |
+
"A"
|
| 11 |
+
],
|
| 12 |
+
"auth_asym_id": [
|
| 13 |
+
"A"
|
| 14 |
+
]
|
| 15 |
+
}
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "EVQLVQSGGGLVKPGGSLRLSCAASGFSFTNAWMNWVRQAPGKGLEWVGRIKSKADGGTTDYAAPVKGKFTISRDDSKNTLYLQMNSLKTEDTAIYYCTSDVYDFSTGFGQRDDFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK",
|
| 20 |
+
"count": 1,
|
| 21 |
+
"label_entity_id": "2",
|
| 22 |
+
"label_asym_id": [
|
| 23 |
+
"B"
|
| 24 |
+
],
|
| 25 |
+
"auth_asym_id": [
|
| 26 |
+
"H"
|
| 27 |
+
]
|
| 28 |
+
}
|
| 29 |
+
},
|
| 30 |
+
{
|
| 31 |
+
"proteinChain": {
|
| 32 |
+
"sequence": "DIVMTQSPSSLSASVGDRVTITCRASQSISYFLNWYQQKPGKAPKLLISAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSSLITFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC",
|
| 33 |
+
"count": 1,
|
| 34 |
+
"label_entity_id": "3",
|
| 35 |
+
"label_asym_id": [
|
| 36 |
+
"C"
|
| 37 |
+
],
|
| 38 |
+
"auth_asym_id": [
|
| 39 |
+
"L"
|
| 40 |
+
]
|
| 41 |
+
}
|
| 42 |
+
}
|
| 43 |
+
],
|
| 44 |
+
"covalent_bonds": [
|
| 45 |
+
{
|
| 46 |
+
"entity1": 1,
|
| 47 |
+
"position1": 333,
|
| 48 |
+
"atom1": "SG",
|
| 49 |
+
"entity2": 1,
|
| 50 |
+
"position2": 358,
|
| 51 |
+
"atom2": "SG"
|
| 52 |
+
},
|
| 53 |
+
{
|
| 54 |
+
"entity1": 1,
|
| 55 |
+
"position1": 376,
|
| 56 |
+
"atom1": "SG",
|
| 57 |
+
"entity2": 1,
|
| 58 |
+
"position2": 429,
|
| 59 |
+
"atom2": "SG"
|
| 60 |
+
},
|
| 61 |
+
{
|
| 62 |
+
"entity1": 1,
|
| 63 |
+
"position1": 388,
|
| 64 |
+
"atom1": "SG",
|
| 65 |
+
"entity2": 1,
|
| 66 |
+
"position2": 522,
|
| 67 |
+
"atom2": "SG"
|
| 68 |
+
},
|
| 69 |
+
{
|
| 70 |
+
"entity1": 1,
|
| 71 |
+
"position1": 477,
|
| 72 |
+
"atom1": "SG",
|
| 73 |
+
"entity2": 1,
|
| 74 |
+
"position2": 485,
|
| 75 |
+
"atom2": "SG"
|
| 76 |
+
},
|
| 77 |
+
{
|
| 78 |
+
"entity1": 1,
|
| 79 |
+
"position1": 535,
|
| 80 |
+
"atom1": "SG",
|
| 81 |
+
"entity2": 1,
|
| 82 |
+
"position2": 587,
|
| 83 |
+
"atom2": "SG"
|
| 84 |
+
},
|
| 85 |
+
{
|
| 86 |
+
"entity1": 2,
|
| 87 |
+
"position1": 22,
|
| 88 |
+
"atom1": "SG",
|
| 89 |
+
"entity2": 2,
|
| 90 |
+
"position2": 98,
|
| 91 |
+
"atom2": "SG"
|
| 92 |
+
},
|
| 93 |
+
{
|
| 94 |
+
"entity1": 3,
|
| 95 |
+
"position1": 23,
|
| 96 |
+
"atom1": "SG",
|
| 97 |
+
"entity2": 3,
|
| 98 |
+
"position2": 88,
|
| 99 |
+
"atom2": "SG"
|
| 100 |
+
}
|
| 101 |
+
],
|
| 102 |
+
"name": "8r8k_H_L_A"
|
| 103 |
+
}
|
| 104 |
+
]
|
protenix_json/8r9y_H_L_A.json
ADDED
|
@@ -0,0 +1,104 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "MPMGSLQPLATLYLLGMLVASVLATLPKLPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGTTSVHATDTDPDYKDDDDKAGPGWSHPQFEKGGGSGGGSGGGSWSHPQFEKGGGSGGGSGGGSWSHPQFEK",
|
| 7 |
+
"count": 1,
|
| 8 |
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|
| 9 |
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|
| 10 |
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"A"
|
| 11 |
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|
| 12 |
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"auth_asym_id": [
|
| 13 |
+
"A"
|
| 14 |
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]
|
| 15 |
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}
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYDMHWVRQAPGKGLEWVAVIWRDGSNEYYADSVKGRFIISRDNSKNTLYLQMNSLRAEDTAVYYCARRGIIMVRGLLGYWGQGTLVTVSSASTKGPSVFPLAPSSKSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK",
|
| 20 |
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"count": 1,
|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
+
"H"
|
| 27 |
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]
|
| 28 |
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}
|
| 29 |
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},
|
| 30 |
+
{
|
| 31 |
+
"proteinChain": {
|
| 32 |
+
"sequence": "DIQMTQSPPSLSASVGDRVTITCRASQGISNYLAWHQQKPGKVPKLLIYTASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCQKYNSAPFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG",
|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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"E"
|
| 37 |
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|
| 38 |
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|
| 39 |
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"L"
|
| 40 |
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|
| 41 |
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|
| 42 |
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}
|
| 43 |
+
],
|
| 44 |
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"covalent_bonds": [
|
| 45 |
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{
|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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{
|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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{
|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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"atom2": "SG"
|
| 68 |
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|
| 69 |
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{
|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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},
|
| 77 |
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{
|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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"atom2": "SG"
|
| 84 |
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},
|
| 85 |
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{
|
| 86 |
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"entity1": 3,
|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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"position2": 88,
|
| 91 |
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"atom2": "SG"
|
| 92 |
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},
|
| 93 |
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{
|
| 94 |
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"entity1": 3,
|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
+
"atom2": "SG"
|
| 100 |
+
}
|
| 101 |
+
],
|
| 102 |
+
"name": "8r9y_H_L_A"
|
| 103 |
+
}
|
| 104 |
+
]
|
protenix_json/8r9z_B_C_A.json
ADDED
|
@@ -0,0 +1,104 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "LEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGTT",
|
| 7 |
+
"count": 1,
|
| 8 |
+
"label_entity_id": "1",
|
| 9 |
+
"label_asym_id": [
|
| 10 |
+
"A"
|
| 11 |
+
],
|
| 12 |
+
"auth_asym_id": [
|
| 13 |
+
"A"
|
| 14 |
+
]
|
| 15 |
+
}
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "VQLVQSGAEVKKPGSSVKVSCKASGGTFSSLAISWVRQAPGQGLEWMGGIIPTFGTTNYAQNFRGRVTITADKSTSTAYMELSTLISEDTAVYFCARERSTDTWPGDAFDIWGQGTMVTVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLLGQTYICNVNHKPSNTKVDKKVEPK",
|
| 20 |
+
"count": 1,
|
| 21 |
+
"label_entity_id": "2",
|
| 22 |
+
"label_asym_id": [
|
| 23 |
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"B"
|
| 24 |
+
],
|
| 25 |
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"auth_asym_id": [
|
| 26 |
+
"B"
|
| 27 |
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]
|
| 28 |
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}
|
| 29 |
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},
|
| 30 |
+
{
|
| 31 |
+
"proteinChain": {
|
| 32 |
+
"sequence": "EILMTQSPATLSVSPGERATLSCWASQSVNSKLAWYQQKPGQAPRLLIYDTSTRATGIPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNYWPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF",
|
| 33 |
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"count": 1,
|
| 34 |
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"label_entity_id": "3",
|
| 35 |
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"label_asym_id": [
|
| 36 |
+
"C"
|
| 37 |
+
],
|
| 38 |
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"auth_asym_id": [
|
| 39 |
+
"C"
|
| 40 |
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]
|
| 41 |
+
}
|
| 42 |
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}
|
| 43 |
+
],
|
| 44 |
+
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|
| 45 |
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{
|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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},
|
| 53 |
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{
|
| 54 |
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"entity1": 1,
|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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{
|
| 62 |
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"entity1": 1,
|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
+
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|
| 68 |
+
},
|
| 69 |
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{
|
| 70 |
+
"entity1": 2,
|
| 71 |
+
"position1": 21,
|
| 72 |
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|
| 73 |
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"entity2": 2,
|
| 74 |
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"position2": 95,
|
| 75 |
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"atom2": "SG"
|
| 76 |
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},
|
| 77 |
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{
|
| 78 |
+
"entity1": 2,
|
| 79 |
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|
| 80 |
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|
| 81 |
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"entity2": 2,
|
| 82 |
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"position2": 200,
|
| 83 |
+
"atom2": "SG"
|
| 84 |
+
},
|
| 85 |
+
{
|
| 86 |
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"entity1": 3,
|
| 87 |
+
"position1": 23,
|
| 88 |
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"atom1": "SG",
|
| 89 |
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"entity2": 3,
|
| 90 |
+
"position2": 88,
|
| 91 |
+
"atom2": "SG"
|
| 92 |
+
},
|
| 93 |
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{
|
| 94 |
+
"entity1": 3,
|
| 95 |
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"position1": 134,
|
| 96 |
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"atom1": "SG",
|
| 97 |
+
"entity2": 3,
|
| 98 |
+
"position2": 194,
|
| 99 |
+
"atom2": "SG"
|
| 100 |
+
}
|
| 101 |
+
],
|
| 102 |
+
"name": "8r9z_B_C_A"
|
| 103 |
+
}
|
| 104 |
+
]
|
protenix_json/8rh2_H_L_B.json
ADDED
|
@@ -0,0 +1,104 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "AAPAAPRASGGVAATVAANGGPASRPPPVPSPATTRARKRKTKKPPERPEATPPPDANATVAAGHATLRAHLREIKVENADAQFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNMETTAFHRDDHETDMELKPAKVATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATSPTTRNLLTTPKFTVAWDWVPKRPAVCTMTKWQEVDEMLRAEYGGSFRFSSDAISTTFTTNLTQYSLSRVDLGDCIGRDAREAIDRMFARKYNATHIKVGQPQYYLATGGFLIAYQPLLSNTLAELYVREYMREQDRKPRNATPAPLREAPSANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRIAVAWCELQNHELTLWNEARKLNPNAIASATVGRRASARMLGDVMAVSTCVPVAPDNVIVQNSMRVSSRPGTCYSRPLVSFRYEDQGPLIEGQLGENNELRLTRDALEPCTVGHRRYFIFGGGYVYFEEYAYSHQLSRADVTTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIRADANAA",
|
| 7 |
+
"count": 1,
|
| 8 |
+
"label_entity_id": "1",
|
| 9 |
+
"label_asym_id": [
|
| 10 |
+
"B"
|
| 11 |
+
],
|
| 12 |
+
"auth_asym_id": [
|
| 13 |
+
"B"
|
| 14 |
+
]
|
| 15 |
+
}
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "EVQLVQSGAEVKTPGASVRVSCKASGHTFRTFDINWVRQAAGQGLEWMGWMSPNSGNTGYARQFQGRVTMTRNISANTAYMELRGLRFDDTAVYYCARGPGSTGTTGSMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK",
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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"H"
|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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"sequence": "QAGLTQPPSVSVAPGKTARISCGGNNIGSKSVHWYQQKPGQAPVLVIYYDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSGSVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS",
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| 33 |
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| 34 |
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|
| 35 |
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| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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| 45 |
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| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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{
|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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{
|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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{
|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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"atom2": "SG"
|
| 100 |
+
}
|
| 101 |
+
],
|
| 102 |
+
"name": "8rh2_H_L_B"
|
| 103 |
+
}
|
| 104 |
+
]
|
protenix_json/8s0l_B__A.json
ADDED
|
@@ -0,0 +1,99 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
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{
|
| 5 |
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"proteinChain": {
|
| 6 |
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"sequence": "KFMGSKCSNSGIECDSSGTCINPSNWCDGVSHCPGGEDENRCVRLYGPNFILQVYSSQRKSWHPVCQDDWNENYGRAACRDMGYKNNFYSSQGIVDDSGSTSFMKLNTSAGNVDIYKKLYHSDACSSKAVVSLRCIACGVNLNSSRQSRIVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDAGGPLVTSKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRADGGPFEDDDDK",
|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
| 13 |
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"A"
|
| 14 |
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]
|
| 15 |
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|
| 16 |
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|
| 17 |
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{
|
| 18 |
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"proteinChain": {
|
| 19 |
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"sequence": "MGSSHHHHHHSSGGGQVQLVESGGGLVQPGGSLRLSCTSSGSPLEHYDIIWFRQAPGREREGVSSITTSGGHTNYADSVKDRFTISRDNAKNVVYLQMNSLKPEDTAVYYCAGRVGGRRNWIVPLDGYDNAYWGQGTQVTVSSGGGSCSA",
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| 20 |
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|
| 21 |
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|
| 22 |
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| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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{
|
| 49 |
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|
| 50 |
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|
| 51 |
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| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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| 56 |
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| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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{
|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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},
|
| 72 |
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{
|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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{
|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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},
|
| 88 |
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{
|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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"atom2": "SG"
|
| 95 |
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}
|
| 96 |
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],
|
| 97 |
+
"name": "8s0l_B__A"
|
| 98 |
+
}
|
| 99 |
+
]
|
protenix_json/8s0n_B__A.json
ADDED
|
@@ -0,0 +1,83 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "RSKFMGSKCSNSGIECDSSGTCINPSNWCDGVSHCPGGEDENRCVRLYGPNFILQVYSSQRKSWHPVCQDDWNENYGRAACRDMGYKNNFYSSQGIVDDSGSTSFMKLNTSAGNVDIYKKLYHSDACSSKAVVSLRCIACGVNLNSSRQSRIVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDAGGPLVTSKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRADGGPFEDDDDK",
|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
| 13 |
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"A"
|
| 14 |
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]
|
| 15 |
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}
|
| 16 |
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},
|
| 17 |
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{
|
| 18 |
+
"proteinChain": {
|
| 19 |
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"sequence": "MGSSHHHHHHSSGGGQVQLVESGGGLVQPGGSLRLSCTSSGSPLEHYDIIWFRQAPGREREGVSSITTSGGHTNYADSVKDRFTISRDNAKNVVYLQMNSLKPEDTAVYYCAGRVGGRRNWIVPLDGYDNAYWGQGTQVTVSSGGGSCSA",
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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"B"
|
| 27 |
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]
|
| 28 |
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}
|
| 29 |
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}
|
| 30 |
+
],
|
| 31 |
+
"covalent_bonds": [
|
| 32 |
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{
|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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{
|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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},
|
| 48 |
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{
|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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{
|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
+
},
|
| 64 |
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{
|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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"atom2": "SG"
|
| 71 |
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},
|
| 72 |
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{
|
| 73 |
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"entity1": 1,
|
| 74 |
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"position1": 333,
|
| 75 |
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"atom1": "SG",
|
| 76 |
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|
| 77 |
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"position2": 361,
|
| 78 |
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"atom2": "SG"
|
| 79 |
+
}
|
| 80 |
+
],
|
| 81 |
+
"name": "8s0n_B__A"
|
| 82 |
+
}
|
| 83 |
+
]
|
protenix_json/8sdg_G_I_C.json
ADDED
|
@@ -0,0 +1,112 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"sequences": [
|
| 4 |
+
{
|
| 5 |
+
"proteinChain": {
|
| 6 |
+
"sequence": "EVQLVESGGGLVQPGGSLKLSCSASGFTLSDSAMHWVRQASGKGLEWVGRISSNVNNDATVYAASLKGRFTISRDESKNMAYLQMNSLKNEDTAVYYCTVVPVLEYYQYGMDVWGQGTTVTIFNQIKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC",
|
| 7 |
+
"count": 1,
|
| 8 |
+
"label_entity_id": "1",
|
| 9 |
+
"label_asym_id": [
|
| 10 |
+
"A"
|
| 11 |
+
],
|
| 12 |
+
"auth_asym_id": [
|
| 13 |
+
"G"
|
| 14 |
+
]
|
| 15 |
+
}
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"proteinChain": {
|
| 19 |
+
"sequence": "DIQLTQSPSTLSASVGDRVIITCRASQSISTWLAWYQQRPGQAPKLLIYKASILQSGVPPRFSGSGSGTDFTLTISRLQPDDFATYYCQQYDSDSQPLTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTQGTTSVTKSFNRGECS",
|
| 20 |
+
"count": 1,
|
| 21 |
+
"label_entity_id": "2",
|
| 22 |
+
"label_asym_id": [
|
| 23 |
+
"B"
|
| 24 |
+
],
|
| 25 |
+
"auth_asym_id": [
|
| 26 |
+
"I"
|
| 27 |
+
]
|
| 28 |
+
}
|
| 29 |
+
},
|
| 30 |
+
{
|
| 31 |
+
"proteinChain": {
|
| 32 |
+
"sequence": "TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSGHHHHHH",
|
| 33 |
+
"count": 1,
|
| 34 |
+
"label_entity_id": "3",
|
| 35 |
+
"label_asym_id": [
|
| 36 |
+
"C"
|
| 37 |
+
],
|
| 38 |
+
"auth_asym_id": [
|
| 39 |
+
"C"
|
| 40 |
+
]
|
| 41 |
+
}
|
| 42 |
+
}
|
| 43 |
+
],
|
| 44 |
+
"covalent_bonds": [
|
| 45 |
+
{
|
| 46 |
+
"entity1": 1,
|
| 47 |
+
"position1": 22,
|
| 48 |
+
"atom1": "SG",
|
| 49 |
+
"entity2": 1,
|
| 50 |
+
"position2": 98,
|
| 51 |
+
"atom2": "SG"
|
| 52 |
+
},
|
| 53 |
+
{
|
| 54 |
+
"entity1": 1,
|
| 55 |
+
"position1": 150,
|
| 56 |
+
"atom1": "SG",
|
| 57 |
+
"entity2": 1,
|
| 58 |
+
"position2": 206,
|
| 59 |
+
"atom2": "SG"
|
| 60 |
+
},
|
| 61 |
+
{
|
| 62 |
+
"entity1": 2,
|
| 63 |
+
"position1": 23,
|
| 64 |
+
"atom1": "SG",
|
| 65 |
+
"entity2": 2,
|
| 66 |
+
"position2": 88,
|
| 67 |
+
"atom2": "SG"
|
| 68 |
+
},
|
| 69 |
+
{
|
| 70 |
+
"entity1": 2,
|
| 71 |
+
"position1": 136,
|
| 72 |
+
"atom1": "SG",
|
| 73 |
+
"entity2": 2,
|
| 74 |
+
"position2": 196,
|
| 75 |
+
"atom2": "SG"
|
| 76 |
+
},
|
| 77 |
+
{
|
| 78 |
+
"entity1": 3,
|
| 79 |
+
"position1": 4,
|
| 80 |
+
"atom1": "SG",
|
| 81 |
+
"entity2": 3,
|
| 82 |
+
"position2": 29,
|
| 83 |
+
"atom2": "SG"
|
| 84 |
+
},
|
| 85 |
+
{
|
| 86 |
+
"entity1": 3,
|
| 87 |
+
"position1": 47,
|
| 88 |
+
"atom1": "SG",
|
| 89 |
+
"entity2": 3,
|
| 90 |
+
"position2": 100,
|
| 91 |
+
"atom2": "SG"
|
| 92 |
+
},
|
| 93 |
+
{
|
| 94 |
+
"entity1": 3,
|
| 95 |
+
"position1": 59,
|
| 96 |
+
"atom1": "SG",
|
| 97 |
+
"entity2": 3,
|
| 98 |
+
"position2": 193,
|
| 99 |
+
"atom2": "SG"
|
| 100 |
+
},
|
| 101 |
+
{
|
| 102 |
+
"entity1": 3,
|
| 103 |
+
"position1": 148,
|
| 104 |
+
"atom1": "SG",
|
| 105 |
+
"entity2": 3,
|
| 106 |
+
"position2": 156,
|
| 107 |
+
"atom2": "SG"
|
| 108 |
+
}
|
| 109 |
+
],
|
| 110 |
+
"name": "8sdg_G_I_C"
|
| 111 |
+
}
|
| 112 |
+
]
|