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Upload Orca32M CMP-Seq dataset
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meta.json
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{
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"reference_id": "hg38",
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"reference_fasta": "data/orca/resources/Homo_sapiens.GRCh38.dna.primary_assembly.fa",
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"reference_memmap": "data/orca/resources/Homo_sapiens.GRCh38.dna.primary_assembly.fa.mmap",
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"blacklist_regions": "hg38",
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"num_bins": 250,
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"bin_size": 128000,
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"upper_offset": 2,
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"sequence_length": 32000000,
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"resolution": 128000,
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"position_resolution": 128000,
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"random_shift": 0,
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"random_strand": true,
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"cg": true,
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"validation_holdout": [
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"chr8"
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],
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"test_holdout": [
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"chr9",
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"chr10"
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],
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"label_mode": "log_oe",
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"expected_log_path": "data/orca/resources/4DNFI9GMP2J8.rebinned.mcool.expected.res32000.mono.npy",
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"expected_log_resolution": 32000,
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"log_oe_eps": 1e-06,
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"seed": 42,
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"splits": [
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"train",
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"validation",
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"test"
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],
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"counts": {
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"train": 10000,
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"validation": 883,
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"test": 1022
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},
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"build_stats": {
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"train": {
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"max_samples": 10000,
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"max_attempts": 500000,
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"attempts": 20582,
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"accepted": 10000,
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"skipped_nan": 533,
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"skipped_duplicate_region": 10049,
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"unique_regions_seen": 10533
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},
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"validation": {
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"max_samples": 883,
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"max_attempts": 44150,
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"attempts": 4875,
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"accepted": 883,
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"skipped_nan": 0,
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"skipped_duplicate_region": 3992,
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"unique_regions_seen": 883
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},
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"test": {
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"max_samples": 1022,
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"max_attempts": 51100,
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"attempts": 8374,
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"accepted": 1022,
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"skipped_nan": 327,
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"skipped_duplicate_region": 7025,
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"unique_regions_seen": 1349
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}
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},
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"unique_region_stats": {
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"train": {
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"unique": 10000,
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"duplicates": 0
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},
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"validation": {
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"unique": 883,
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"duplicates": 0
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},
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"test": {
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"unique": 1022,
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"duplicates": 0
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}
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},
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"max_attempts_multiplier": 50,
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"cmp_seq": {
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"sequence_key": "sequence",
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"sequence_format": "string",
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"sequence_encoding": "string",
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"label_mask_key": "mask_ut",
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"reference_fasta": "data/orca/resources/Homo_sapiens.GRCh38.dna.primary_assembly.fa",
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"created_at_unix": 1768572336
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}
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}
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