repo_id stringlengths 6 101 | file_path stringlengths 2 269 | content stringlengths 367 5.14M | size int64 367 5.14M | filename stringlengths 1 248 | ext stringlengths 0 87 | lang stringclasses 88
values | program_lang stringclasses 232
values | doc_type stringclasses 5
values | quality_signal stringlengths 2 1.9k | effective stringclasses 2
values | hit_map stringlengths 2 1.4k |
|---|---|---|---|---|---|---|---|---|---|---|---|
2003100127/pypropel | pypropel/prot/sequence/ConvertM2S.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import re
import pandas as pd
from Bio import SeqIO
from pypropel.util.Reader import Reader as pfreader
from pypropel.util.Console import Con... | 4,095 | ConvertM2S | py | en | python | code | {"qsc_code_num_words": 531, "qsc_code_num_chars": 4095.0, "qsc_code_mean_word_length": 4.26365348, "qsc_code_frac_words_unique": 0.23352166, "qsc_code_frac_chars_top_2grams": 0.09010601, "qsc_code_frac_chars_top_3grams": 0.02650177, "qsc_code_frac_chars_top_4grams": 0.02650177, "qsc_code_frac_chars_dupe_5grams": 0.1925... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/sequence/IsEmpty.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
from pypropel.prot.sequence.Fasta import Fasta
from pypropel.prot.sequence.Name import Name as chainname
from pypropel.util.Writer import Wri... | 2,069 | IsEmpty | py | en | python | code | {"qsc_code_num_words": 241, "qsc_code_num_chars": 2069.0, "qsc_code_mean_word_length": 4.4813278, "qsc_code_frac_words_unique": 0.35684647, "qsc_code_frac_chars_top_2grams": 0.05, "qsc_code_frac_chars_top_3grams": 0.0462963, "qsc_code_frac_chars_top_4grams": 0.04444444, "qsc_code_frac_chars_dupe_5grams": 0.0, "qsc_code... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/sequence/Fasta.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
from Bio import SeqIO
class Fasta:
def get(
self,
fasta_fpn: str,
) -> str:
"""
Get the se... | 1,582 | Fasta | py | en | python | code | {"qsc_code_num_words": 189, "qsc_code_num_chars": 1582.0, "qsc_code_mean_word_length": 3.78306878, "qsc_code_frac_words_unique": 0.39153439, "qsc_code_frac_chars_top_2grams": 0.05594406, "qsc_code_frac_chars_top_3grams": 0.05034965, "qsc_code_frac_chars_top_4grams": 0.0, "qsc_code_frac_chars_dupe_5grams": 0.0, "qsc_cod... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗагрузкаПравилРегистрацииОбъектов/Forms/Форма/Ext/Form.xml | <?xml version="1.0" encoding="UTF-8"?>
<Form xmlns="http://v8.1c.ru/8.3/xcf/logform" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:dcscor="http://v8.1c.ru/8.1/data-composition-system/core" xmlns:dcssch="http://v8.1c.ru/8.1/data-composition... | 1,323 | Form | xml | ru | xml | data | {"qsc_code_num_words": 228, "qsc_code_num_chars": 1323.0, "qsc_code_mean_word_length": 4.15350877, "qsc_code_frac_words_unique": 0.31578947, "qsc_code_frac_chars_top_2grams": 0.09503696, "qsc_code_frac_chars_top_3grams": 0.12671595, "qsc_code_frac_chars_top_4grams": 0.15839493, "qsc_code_frac_chars_dupe_5grams": 0.4318... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ПоискИУдалениеДублей/Forms/ПоискДублей/Ext/Form.xml | <?xml version="1.0" encoding="UTF-8"?>
<Form xmlns="http://v8.1c.ru/8.3/xcf/logform" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:dcscor="http://v8.1c.ru/8.1/data-composition-system/core" xmlns:dcssch="http://v8.1c.ru/8.1/data-composition... | 105,096 | Form | xml | ru | xml | data | {"qsc_code_num_words": 8820, "qsc_code_num_chars": 105096.0, "qsc_code_mean_word_length": 7.25385488, "qsc_code_frac_words_unique": 0.14172336, "qsc_code_frac_chars_top_2grams": 0.03019741, "qsc_code_frac_chars_top_3grams": 0.02785289, "qsc_code_frac_chars_top_4grams": 0.03019741, "qsc_code_frac_chars_dupe_5grams": 0.5... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 1, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
2003scape/rsc-client | src/ui/welcome-dialog.js | const colours = require('./_colours');
const WIDTH = 400;
function drawDialogWelcome() {
let height = 65;
if (this.welcomeRecoverySetDays !== 201) {
height += 60;
}
if (this.welcomeUnreadMessages > 0) {
height += 60;
}
if (this.welcomeLastLoggedInIP !== 0) {
height +... | 5,689 | welcome-dialog | js | en | javascript | code | {"qsc_code_num_words": 461, "qsc_code_num_chars": 5689.0, "qsc_code_mean_word_length": 5.38177874, "qsc_code_frac_words_unique": 0.26464208, "qsc_code_frac_chars_top_2grams": 0.03869407, "qsc_code_frac_chars_top_3grams": 0.15235792, "qsc_code_frac_chars_top_4grams": 0.04836759, "qsc_code_frac_chars_dupe_5grams": 0.3986... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003scape/rsc-client | src/ui/chat-message-tabs.js | const ChatMessage = require('../chat-message');
const Panel = require('../panel');
const WordFilter = require('../word-filter');
const colours = require('./_colours');
const HBAR_WIDTH = 512;
const ALL_MAX_LENGTH = 80;
const HISTORY_MAX_ENTRIES = 20;
function createMessageTabPanel() {
this.panelMessageTabs = new... | 8,814 | chat-message-tabs | js | en | javascript | code | {"qsc_code_num_words": 757, "qsc_code_num_chars": 8814.0, "qsc_code_mean_word_length": 6.48745046, "qsc_code_frac_words_unique": 0.22985469, "qsc_code_frac_chars_top_2grams": 0.03543067, "qsc_code_frac_chars_top_3grams": 0.0415394, "qsc_code_frac_chars_top_4grams": 0.03868866, "qsc_code_frac_chars_dupe_5grams": 0.39971... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003scape/rsc-client | src/ui/trade-dialog.js | const GameData = require('../game-data');
const clientOpcodes = require('../opcodes/client');
const colours = require('./_colours');
const DIALOG_X = 22;
const DIALOG_Y = 36;
function drawDialogTrade() {
if (
this.mouseButtonClick !== 0 &&
this.mouseButtonItemCountIncrement === 0
) {
t... | 14,204 | trade-dialog | js | en | javascript | code | {"qsc_code_num_words": 1114, "qsc_code_num_chars": 14204.0, "qsc_code_mean_word_length": 5.25583483, "qsc_code_frac_words_unique": 0.1454219, "qsc_code_frac_chars_top_2grams": 0.06575576, "qsc_code_frac_chars_top_3grams": 0.01195559, "qsc_code_frac_chars_top_4grams": 0.01366354, "qsc_code_frac_chars_dupe_5grams": 0.636... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003scape/rsc-client | src/ui/trade-confirm-dialog.js | const GameData = require('../game-data');
const Utility = require('../utility');
const clientOpcodes = require('../opcodes/client');
const colours = require('./_colours');
const DIALOG_X = 22;
const DIALOG_Y = 36;
function drawDialogTradeConfirm() {
this.surface.drawBox(DIALOG_X, DIALOG_Y, 468, 16, 192);
thi... | 4,980 | trade-confirm-dialog | js | en | javascript | code | {"qsc_code_num_words": 457, "qsc_code_num_chars": 4980.0, "qsc_code_mean_word_length": 5.56673961, "qsc_code_frac_words_unique": 0.27133479, "qsc_code_frac_chars_top_2grams": 0.06053459, "qsc_code_frac_chars_top_3grams": 0.11674528, "qsc_code_frac_chars_top_4grams": 0.04009434, "qsc_code_frac_chars_dupe_5grams": 0.5566... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003scape/rsc-client | src/ui/set-active-ui-tab.js | const BUTTON_SIZE = 32;
function setActiveUITab() {
if (
this.showUITab === 0 &&
this.mouseX >= this.gameWidth - 35 &&
this.mouseY >= 3 &&
this.mouseX < this.gameWidth - 3 &&
this.mouseY < 35
) {
this.showUITab = 1;
}
if (
this.showUITab === 0 &&... | 5,038 | set-active-ui-tab | js | en | javascript | code | {"qsc_code_num_words": 513, "qsc_code_num_chars": 5038.0, "qsc_code_mean_word_length": 4.51851852, "qsc_code_frac_words_unique": 0.11695906, "qsc_code_frac_chars_top_2grams": 0.22433132, "qsc_code_frac_chars_top_3grams": 0.18119068, "qsc_code_frac_chars_top_4grams": 0.27782571, "qsc_code_frac_chars_dupe_5grams": 0.7735... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 1, "qsc_code_frac_chars_top_3grams": 1, "qsc_code_frac_chars_top_4grams": 1, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 1, "qsc... |
2003scape/rsc-client | src/ui/report-dialog.js | const Utility = require('../utility');
const clientOpcodes = require('../opcodes/client');
const colours = require('./_colours');
const DIALOG_X = 56;
const DIALOG_Y = 35;
const HEIGHT = 290;
const LINE_BREAK = 15;
const WIDTH = 400;
const INPUT_DIALOG_Y = DIALOG_Y + 95;
const INPUT_HEIGHT = 100;
const RULES = [
... | 6,897 | report-dialog | js | en | javascript | code | {"qsc_code_num_words": 669, "qsc_code_num_chars": 6897.0, "qsc_code_mean_word_length": 5.40657698, "qsc_code_frac_words_unique": 0.2690583, "qsc_code_frac_chars_top_2grams": 0.04865911, "qsc_code_frac_chars_top_3grams": 0.08211225, "qsc_code_frac_chars_top_4grams": 0.04147083, "qsc_code_frac_chars_dupe_5grams": 0.36273... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003scape/rsc-client | src/ui/shop-dialog.js | const GameData = require('../game-data');
const clientOpcodes = require('../opcodes/client');
const colours = require('./_colours');
const COINS_ID = 10;
function drawDialogShop() {
if (this.mouseButtonClick !== 0) {
this.mouseButtonClick = 0;
const mouseX = this.mouseX - 52;
const mouseY... | 10,589 | shop-dialog | js | en | javascript | code | {"qsc_code_num_words": 752, "qsc_code_num_chars": 10589.0, "qsc_code_mean_word_length": 5.76994681, "qsc_code_frac_words_unique": 0.2087766, "qsc_code_frac_chars_top_2grams": 0.06084351, "qsc_code_frac_chars_top_3grams": 0.03387877, "qsc_code_frac_chars_top_4grams": 0.03410924, "qsc_code_frac_chars_dupe_5grams": 0.5130... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ПоискИУдалениеДублей/Forms/ПоискДублей/Ext/Form/Module.bsl | ///////////////////////////////////////////////////////////////////////////////////////////////////////
// Copyright (c) 2024, ООО 1С-Софт
// Все права защищены. Эта программа и сопроводительные материалы предоставляются
// в соответствии с условиями лицензии Attribution 4.0 International (CC BY 4.0)
// Текст лицензи... | 85,784 | Module | bsl | ru | 1c enterprise | code | {"qsc_code_num_words": 6172, "qsc_code_num_chars": 85784.0, "qsc_code_mean_word_length": 11.23784835, "qsc_code_frac_words_unique": 0.16477641, "qsc_code_frac_chars_top_2grams": 0.00726644, "qsc_code_frac_chars_top_3grams": 0.02306805, "qsc_code_frac_chars_top_4grams": 0.00768454, "qsc_code_frac_chars_dupe_5grams": 0.2... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003scape/rsc-client | src/ui/sleep.js | const clientOpcodes = require('../opcodes/client');
const colours = require('./_colours');
function drawSleep() {
this.surface.fadeToBlack();
if (Math.random() <= 0.15) {
this.surface.drawStringCenter(
'ZZZ',
(Math.random() * 80) | 0,
(Math.random() * this.gameHeigh... | 4,142 | sleep | js | en | javascript | code | {"qsc_code_num_words": 369, "qsc_code_num_chars": 4142.0, "qsc_code_mean_word_length": 5.67750678, "qsc_code_frac_words_unique": 0.33604336, "qsc_code_frac_chars_top_2grams": 0.07875895, "qsc_code_frac_chars_top_3grams": 0.07350835, "qsc_code_frac_chars_top_4grams": 0.07875895, "qsc_code_frac_chars_dupe_5grams": 0.4334... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003scape/rsc-client | src/ui/social-dialog.js | // dialog boxes for private messaging and ignore lists
const ChatMessage = require('../chat-message');
const Utility = require('../utility');
const WordFilter = require('../word-filter');
const colours = require('./_colours');
function drawDialogSocialInput() {
if (this.mouseButtonClick !== 0) {
this.mous... | 5,405 | social-dialog | js | en | javascript | code | {"qsc_code_num_words": 430, "qsc_code_num_chars": 5405.0, "qsc_code_mean_word_length": 6.06976744, "qsc_code_frac_words_unique": 0.22093023, "qsc_code_frac_chars_top_2grams": 0.02988506, "qsc_code_frac_chars_top_3grams": 0.0697318, "qsc_code_frac_chars_top_4grams": 0.03448276, "qsc_code_frac_chars_dupe_5grams": 0.58160... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003scape/rsc-client | src/ui/social-tab.js | const Utility = require('../utility');
const colours = require('./_colours');
const MENU_WIDTH = 245;
const HEIGHT = 182;
const WIDTH = 196;
const HALF_WIDTH = (WIDTH / 2) | 0;
const TABS = ['Friends', 'Ignore'];
const TAB_HEIGHT = 24;
function drawUiTabSocial(noMenus) {
let uiX = this.gameWidth - WIDTH - 3;
... | 9,129 | social-tab | js | en | javascript | code | {"qsc_code_num_words": 689, "qsc_code_num_chars": 9129.0, "qsc_code_mean_word_length": 6.02902758, "qsc_code_frac_words_unique": 0.18142235, "qsc_code_frac_chars_top_2grams": 0.02744343, "qsc_code_frac_chars_top_3grams": 0.03129514, "qsc_code_frac_chars_top_4grams": 0.03610977, "qsc_code_frac_chars_dupe_5grams": 0.5122... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ПоискИУдалениеДублей/Forms/ПравилаОтбора/Ext/Form.xml | <?xml version="1.0" encoding="UTF-8"?>
<Form xmlns="http://v8.1c.ru/8.3/xcf/logform" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:dcscor="http://v8.1c.ru/8.1/data-composition-system/core" xmlns:dcssch="http://v8.1c.ru/8.1/data-composition... | 7,717 | Form | xml | ru | xml | data | {"qsc_code_num_words": 759, "qsc_code_num_chars": 7717.0, "qsc_code_mean_word_length": 7.31093544, "qsc_code_frac_words_unique": 0.2687747, "qsc_code_frac_chars_top_2grams": 0.01730041, "qsc_code_frac_chars_top_3grams": 0.02162552, "qsc_code_frac_chars_top_4grams": 0.0270319, "qsc_code_frac_chars_dupe_5grams": 0.290502... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 1, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
2003scape/rsc-client | src/ui/server-message-dialog.js | const colours = require('./_colours');
const WIDTH = 400;
function drawDialogServerMessage() {
let height = 100;
if (this.serverMessageBoxTop) {
height = 450;
height = 300;
}
this.surface.drawBox(
256 - ((WIDTH / 2) | 0),
167 - ((height / 2) | 0),
WIDTH,
... | 1,674 | server-message-dialog | js | en | javascript | code | {"qsc_code_num_words": 151, "qsc_code_num_chars": 1674.0, "qsc_code_mean_word_length": 5.33774834, "qsc_code_frac_words_unique": 0.32450331, "qsc_code_frac_chars_top_2grams": 0.0248139, "qsc_code_frac_chars_top_3grams": 0.05955335, "qsc_code_frac_chars_top_4grams": 0.06823821, "qsc_code_frac_chars_dupe_5grams": 0.20347... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003scape/rsc-client | src/ui/bank-dialog.js | const GameData = require('../game-data');
const clientOpcodes = require('../opcodes/client');
const colours = require('./_colours');
const WIDTH = 408;
const HEIGHT = 334;
const ITEMS_PER_PAGE = 48;
const MAGIC_DEPOSIT = 0x87654321;
const MAGIC_WITHDRAW = 0x12345678;
function drawDialogBank() {
if (this.bankActi... | 23,531 | bank-dialog | js | en | javascript | code | {"qsc_code_num_words": 1835, "qsc_code_num_chars": 23531.0, "qsc_code_mean_word_length": 5.28882834, "qsc_code_frac_words_unique": 0.09100817, "qsc_code_frac_chars_top_2grams": 0.10221535, "qsc_code_frac_chars_top_3grams": 0.03853684, "qsc_code_frac_chars_top_4grams": 0.04204019, "qsc_code_frac_chars_dupe_5grams": 0.75... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 1, "qsc... |
2003scape/rsc-client | src/ui/wilderness-dialog.js | const colours = require('./_colours');
function drawDialogWildWarn() {
let y = 97;
this.surface.drawBox(86, 77, 340, 180, colours.black);
this.surface.drawBoxEdge(86, 77, 340, 180, colours.white);
this.surface.drawStringCenter(
'Warning! Proceed with caution',
256,
y,
... | 2,464 | wilderness-dialog | js | en | javascript | code | {"qsc_code_num_words": 247, "qsc_code_num_chars": 2464.0, "qsc_code_mean_word_length": 4.82186235, "qsc_code_frac_words_unique": 0.34817814, "qsc_code_frac_chars_top_2grams": 0.1015953, "qsc_code_frac_chars_top_3grams": 0.20403023, "qsc_code_frac_chars_top_4grams": 0.07052897, "qsc_code_frac_chars_dupe_5grams": 0.36943... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 1, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗаявлениеНаВыпускНовогоКвалифицированногоСертификата/Templates/ИменаРегионовРФ.xml | <?xml version="1.0" encoding="UTF-8"?>
<MetaDataObject xmlns="http://v8.1c.ru/8.3/MDClasses" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:cmi="http://v8.1c.ru/8.2/managed-application/cmi" xmlns:ent="http://v8.1c.ru/8.1/data/enterprise" xm... | 1,378 | ИменаРегионовРФ | xml | ru | xml | data | {"qsc_code_num_words": 244, "qsc_code_num_chars": 1378.0, "qsc_code_mean_word_length": 3.97540984, "qsc_code_frac_words_unique": 0.37295082, "qsc_code_frac_chars_top_2grams": 0.09278351, "qsc_code_frac_chars_top_3grams": 0.12371134, "qsc_code_frac_chars_top_4grams": 0.15463918, "qsc_code_frac_chars_dupe_5grams": 0.3783... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
2003100127/pypropel | pypropel/prot/feature/rsa/Assemble.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import time
import numpy as np
from pypropel.util.Console import Console
class Assemble:
def __init__(
self,
v... | 7,671 | Assemble | py | en | python | code | {"qsc_code_num_words": 1079, "qsc_code_num_chars": 7671.0, "qsc_code_mean_word_length": 3.26876738, "qsc_code_frac_words_unique": 0.12418906, "qsc_code_frac_chars_top_2grams": 0.11057556, "qsc_code_frac_chars_top_3grams": 0.09923448, "qsc_code_frac_chars_top_4grams": 0.07485115, "qsc_code_frac_chars_dupe_5grams": 0.598... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/rsa/Reader.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import re
import linecache
import pandas as pd
from pypropel.util.Reader import Reader as pfreader
class Reader:
def __init__(self, ):... | 1,724 | Reader | py | en | python | code | {"qsc_code_num_words": 198, "qsc_code_num_chars": 1724.0, "qsc_code_mean_word_length": 4.53030303, "qsc_code_frac_words_unique": 0.38383838, "qsc_code_frac_chars_top_2grams": 0.08026756, "qsc_code_frac_chars_top_3grams": 0.06688963, "qsc_code_frac_chars_top_4grams": 0.09364548, "qsc_code_frac_chars_dupe_5grams": 0.3076... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗаявлениеНаВыпускНовогоКвалифицированногоСертификата/Templates/ЮридическоеЛицо.xml | <?xml version="1.0" encoding="UTF-8"?>
<MetaDataObject xmlns="http://v8.1c.ru/8.3/MDClasses" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:cmi="http://v8.1c.ru/8.2/managed-application/cmi" xmlns:ent="http://v8.1c.ru/8.1/data/enterprise" xm... | 1,254 | ЮридическоеЛицо | xml | ru | xml | data | {"qsc_code_num_words": 224, "qsc_code_num_chars": 1254.0, "qsc_code_mean_word_length": 3.89732143, "qsc_code_frac_words_unique": 0.33482143, "qsc_code_frac_chars_top_2grams": 0.10309278, "qsc_code_frac_chars_top_3grams": 0.13745704, "qsc_code_frac_chars_top_4grams": 0.17182131, "qsc_code_frac_chars_dupe_5grams": 0.4203... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 1, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
2003100127/pypropel | pypropel/prot/feature/structure/DSSP.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import pandas as pd
from Bio.PDB import PDBParser as biopypdb
from Bio.PDB.DSSP import DSSP as biopythondssp
from pypropel.prot.sequence.Name... | 3,755 | DSSP | py | en | python | code | {"qsc_code_num_words": 435, "qsc_code_num_chars": 3755.0, "qsc_code_mean_word_length": 4.06206897, "qsc_code_frac_words_unique": 0.27586207, "qsc_code_frac_chars_top_2grams": 0.05432937, "qsc_code_frac_chars_top_3grams": 0.0475382, "qsc_code_frac_chars_top_4grams": 0.03169213, "qsc_code_frac_chars_dupe_5grams": 0.17883... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/structure/Threedi.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import mini3di
from Bio.PDB import PDBParser
from pypropel.prot.sequence.Name import Name as chainname
from pypropel.util.Console import Cons... | 2,381 | Threedi | py | en | python | code | {"qsc_code_num_words": 281, "qsc_code_num_chars": 2381.0, "qsc_code_mean_word_length": 4.42704626, "qsc_code_frac_words_unique": 0.31316726, "qsc_code_frac_chars_top_2grams": 0.07073955, "qsc_code_frac_chars_top_3grams": 0.07717042, "qsc_code_frac_chars_top_4grams": 0.04823151, "qsc_code_frac_chars_dupe_5grams": 0.2033... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗаявлениеНаВыпускНовогоКвалифицированногоСертификата/Templates/Сертификат.xml | <?xml version="1.0" encoding="UTF-8"?>
<MetaDataObject xmlns="http://v8.1c.ru/8.3/MDClasses" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:cmi="http://v8.1c.ru/8.2/managed-application/cmi" xmlns:ent="http://v8.1c.ru/8.1/data/enterprise" xm... | 1,243 | Сертификат | xml | ru | xml | data | {"qsc_code_num_words": 223, "qsc_code_num_chars": 1243.0, "qsc_code_mean_word_length": 3.86995516, "qsc_code_frac_words_unique": 0.32735426, "qsc_code_frac_chars_top_2grams": 0.10428737, "qsc_code_frac_chars_top_3grams": 0.13904983, "qsc_code_frac_chars_top_4grams": 0.17381228, "qsc_code_frac_chars_dupe_5grams": 0.4252... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 1, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
2003100127/pypropel | pypropel/prot/feature/ss/Assemble.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import time
import numpy as np
from pypropel.util.normalization.Standardize import Standardize
from pypropel.util.Console import Console
cl... | 6,957 | Assemble | py | en | python | code | {"qsc_code_num_words": 939, "qsc_code_num_chars": 6957.0, "qsc_code_mean_word_length": 3.45580405, "qsc_code_frac_words_unique": 0.13205538, "qsc_code_frac_chars_top_2grams": 0.09984592, "qsc_code_frac_chars_top_3grams": 0.07334361, "qsc_code_frac_chars_top_4grams": 0.04437596, "qsc_code_frac_chars_dupe_5grams": 0.5044... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosum45.bla | # Matrix made by matblas from blosum45.iij
# * column uses minimum score
# BLOSUM Clustered Scoring Matrix in 1/3 Bit Units
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= 45
# Entropy = 0.3795, Expected = -0.2789
A R N D C Q E G H I L K M F P S T W Y V B Z X *
... | 2,072 | blosum45 | bla | en | unknown | unknown | {} | 0 | {} |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗаявлениеНаВыпускНовогоКвалифицированногоСертификата/Forms/Информация.xml | <?xml version="1.0" encoding="UTF-8"?>
<MetaDataObject xmlns="http://v8.1c.ru/8.3/MDClasses" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:cmi="http://v8.1c.ru/8.2/managed-application/cmi" xmlns:ent="http://v8.1c.ru/8.1/data/enterprise" xm... | 1,503 | Информация | xml | ru | xml | data | {"qsc_code_num_words": 247, "qsc_code_num_chars": 1503.0, "qsc_code_mean_word_length": 4.28340081, "qsc_code_frac_words_unique": 0.32793522, "qsc_code_frac_chars_top_2grams": 0.08506616, "qsc_code_frac_chars_top_3grams": 0.11342155, "qsc_code_frac_chars_top_4grams": 0.14177694, "qsc_code_frac_chars_dupe_5grams": 0.4187... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗаявлениеНаВыпускНовогоКвалифицированногоСертификата/Forms/ФормаСоглашения.xml | <?xml version="1.0" encoding="UTF-8"?>
<MetaDataObject xmlns="http://v8.1c.ru/8.3/MDClasses" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:cmi="http://v8.1c.ru/8.2/managed-application/cmi" xmlns:ent="http://v8.1c.ru/8.1/data/enterprise" xm... | 1,514 | ФормаСоглашения | xml | ru | xml | data | {"qsc_code_num_words": 248, "qsc_code_num_chars": 1514.0, "qsc_code_mean_word_length": 4.30645161, "qsc_code_frac_words_unique": 0.33467742, "qsc_code_frac_chars_top_2grams": 0.08426966, "qsc_code_frac_chars_top_3grams": 0.11235955, "qsc_code_frac_chars_top_4grams": 0.14044944, "qsc_code_frac_chars_dupe_5grams": 0.4147... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosum50.bla | # Matrix made by matblas from blosum50.iij
# * column uses minimum score
# BLOSUM Clustered Scoring Matrix in 1/3 Bit Units
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= 50
# Entropy = 0.4808, Expected = -0.3573
A R N D C Q E G H I L K M F P S T W Y V B Z X *
... | 2,072 | blosum50 | bla | en | unknown | unknown | {} | 0 | {} |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosum40.bla | # Matrix made by matblas from blosum40.iij
# * column uses minimum score
# BLOSUM Clustered Scoring Matrix in 1/4 Bit Units
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= 40
# Entropy = 0.2851, Expected = -0.2090
A R N D C Q E G H I L K M F P S T W Y V B Z X *
... | 2,072 | blosum40 | bla | en | unknown | unknown | {} | 0 | {} |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗаявлениеНаВыпускНовогоКвалифицированногоСертификата/Forms/ВводПинКода.xml | <?xml version="1.0" encoding="UTF-8"?>
<MetaDataObject xmlns="http://v8.1c.ru/8.3/MDClasses" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:cmi="http://v8.1c.ru/8.2/managed-application/cmi" xmlns:ent="http://v8.1c.ru/8.1/data/enterprise" xm... | 1,507 | ВводПинКода | xml | ru | xml | data | {"qsc_code_num_words": 249, "qsc_code_num_chars": 1507.0, "qsc_code_mean_word_length": 4.25702811, "qsc_code_frac_words_unique": 0.3373494, "qsc_code_frac_chars_top_2grams": 0.08490566, "qsc_code_frac_chars_top_3grams": 0.11320755, "qsc_code_frac_chars_top_4grams": 0.14150943, "qsc_code_frac_chars_dupe_5grams": 0.41792... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosum100.bla | # Matrix made by matblas from blosum100.iij
# * column uses minimum score
# BLOSUM Clustered Scoring Matrix in 1/2 Bit Units
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= 100
# Entropy = 1.4516, Expected = -1.0948
A R N D C Q E G H I L K M F P S T W Y V B Z X ... | 2,074 | blosum100 | bla | en | unknown | unknown | {} | 0 | {} |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosum50.qij | # BLOSUM Clustered Target Frequencies=qij
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= 50
A R N D C Q E G H I L K M F P S T W Y V
0.0192
0.0027 0.0152
0.0024 0.0020 0.0101
0.0026 0.0019... | 1,752 | blosum50 | qij | eu | unknown | unknown | {} | 0 | {} |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosum35.qij | # BLOSUM Clustered Target Frequencies=qij
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= 35
A R N D C Q E G H I L K M F P S T W Y V
0.0129
0.0033 0.0097
0.0030 0.0019 0.0061
0.0036 0.0023... | 1,752 | blosum35 | qij | th | unknown | unknown | {} | 0 | {} |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosum80.qij | # BLOSUM Clustered Target Frequencies=qij
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= 80
A R N D C Q E G H I L K M F P S T W Y V
0.0252
0.0020 0.0210
0.0016 0.0017 0.0166
0.0018 0.0013... | 1,752 | blosum80 | qij | eu | unknown | unknown | {} | 0 | {} |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosum30.qij | # BLOSUM Clustered Target Frequencies=qij
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= 30
A R N D C Q E G H I L K M F P S T W Y V
0.0096
0.0038 0.0109
0.0031 0.0019 0.0055
0.0043 0.0026... | 1,752 | blosum30 | qij | th | unknown | unknown | {} | 0 | {} |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosum62_3.bla | # Matrix made by matblas from blosum62_3.iij
# * column uses minimum score
# BLOSUM Clustered Scoring Matrix in 1/3 Bit Units
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= 62
# Entropy = 0.6979, Expected = -0.5209
A R N D C Q E G H I L K M F P S T W Y V B Z X ... | 2,074 | blosum62_3 | bla | en | unknown | unknown | {} | 0 | {} |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosumn.qij | # BLOSUM Clustered Target Frequencies=qij
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= -2
A R N D C Q E G H I L K M F P S T W Y V
0.0339
0.0015 0.0271
0.0012 0.0013 0.0209
0.0013 0.0009... | 1,752 | blosumn | qij | eu | unknown | unknown | {} | 0 | {} |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosum80.bla | # Matrix made by matblas from blosum80.iij
# * column uses minimum score
# BLOSUM Clustered Scoring Matrix in 1/2 Bit Units
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= 80
# Entropy = 0.9868, Expected = -0.7442
A R N D C Q E G H I L K M F P S T W Y V B Z X *
... | 2,072 | blosum80 | bla | en | unknown | unknown | {} | 0 | {} |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosum35.bla | # Matrix made by matblas from blosum35.iij
# * column uses minimum score
# BLOSUM Clustered Scoring Matrix in 1/4 Bit Units
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= 35
# Entropy = 0.2111, Expected = -0.1550
A R N D C Q E G H I L K M F P S T W Y V B Z X *
... | 2,072 | blosum35 | bla | en | unknown | unknown | {} | 0 | {} |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/matrix/blosum62.bla | # Matrix made by matblas from blosum62.iij
# * column uses minimum score
# BLOSUM Clustered Scoring Matrix in 1/2 Bit Units
# Blocks Database = /data/blocks_5.0/blocks.dat
# Cluster Percentage: >= 62
# Entropy = 0.6979, Expected = -0.5209
A R N D C Q E G H I L K M F P S T W Y V B Z X *
... | 2,072 | blosum62 | bla | en | unknown | unknown | {} | 0 | {} |
2003100127/pypropel | pypropel/prot/plot/Variant.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
from pypropel.util.Reader import Reader as pfreader
import matplotlib.pyplot as plt
import numpy as np
import seaborn as sns
class Variant:... | 2,355 | Variant | py | en | python | code | {"qsc_code_num_words": 277, "qsc_code_num_chars": 2355.0, "qsc_code_mean_word_length": 4.35379061, "qsc_code_frac_words_unique": 0.44404332, "qsc_code_frac_chars_top_2grams": 0.05970149, "qsc_code_frac_chars_top_3grams": 0.04975124, "qsc_code_frac_chars_top_4grams": 0.03482587, "qsc_code_frac_chars_dupe_5grams": 0.1252... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/plot/Binning.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import math
import numpy as np
import seaborn as sns
import matplotlib.pyplot as plt
class Binning:
def __init__(self, df, key, num_bi... | 4,909 | Binning | py | en | python | code | {"qsc_code_num_words": 652, "qsc_code_num_chars": 4909.0, "qsc_code_mean_word_length": 3.74539877, "qsc_code_frac_words_unique": 0.27453988, "qsc_code_frac_chars_top_2grams": 0.03685504, "qsc_code_frac_chars_top_3grams": 0.02047502, "qsc_code_frac_chars_top_4grams": 0.01842752, "qsc_code_frac_chars_dupe_5grams": 0.2579... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/plot/ROCPR.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import seaborn as sns
import matplotlib.pyplot as plt
from pypropel.prot.plot.MetricFormatter import MetricFormatter
class ROCPR:
def ... | 3,888 | ROCPR | py | en | python | code | {"qsc_code_num_words": 345, "qsc_code_num_chars": 3888.0, "qsc_code_mean_word_length": 4.49565217, "qsc_code_frac_words_unique": 0.4, "qsc_code_frac_chars_top_2grams": 0.02578981, "qsc_code_frac_chars_top_3grams": 0.01547389, "qsc_code_frac_chars_top_4grams": 0.02578981, "qsc_code_frac_chars_dupe_5grams": 0.27917473, "... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗагрузкаПравилРегистрацииОбъектов/Ext/ObjectModule.bsl | ///////////////////////////////////////////////////////////////////////////////////////////////////////
// Copyright (c) 2024, ООО 1С-Софт
// Все права защищены. Эта программа и сопроводительные материалы предоставляются
// в соответствии с условиями лицензии Attribution 4.0 International (CC BY 4.0)
// Текст лицензи... | 35,595 | ObjectModule | bsl | ru | 1c enterprise | code | {"qsc_code_num_words": 2761, "qsc_code_num_chars": 35595.0, "qsc_code_mean_word_length": 9.57370518, "qsc_code_frac_words_unique": 0.20608475, "qsc_code_frac_chars_top_2grams": 0.02542277, "qsc_code_frac_chars_top_3grams": 0.03215677, "qsc_code_frac_chars_top_4grams": 0.02602807, "qsc_code_frac_chars_dupe_5grams": 0.27... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/file/Pack.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
from pypropel.prot.structure.chain.Splitter import Splitter
from pypropel.prot.structure.chain.Format import Format
from pypropel.prot.struct... | 3,303 | Pack | py | en | python | code | {"qsc_code_num_words": 353, "qsc_code_num_chars": 3303.0, "qsc_code_mean_word_length": 4.35977337, "qsc_code_frac_words_unique": 0.27478754, "qsc_code_frac_chars_top_2grams": 0.06237817, "qsc_code_frac_chars_top_3grams": 0.05198181, "qsc_code_frac_chars_top_4grams": 0.04548408, "qsc_code_frac_chars_dupe_5grams": 0.2521... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗагрузкаПравилРегистрацииОбъектов/Ext/ManagerModule.bsl | ///////////////////////////////////////////////////////////////////////////////////////////////////////
// Copyright (c) 2024, ООО 1С-Софт
// Все права защищены. Эта программа и сопроводительные материалы предоставляются
// в соответствии с условиями лицензии Attribution 4.0 International (CC BY 4.0)
// Текст лицензи... | 5,871 | ManagerModule | bsl | ru | 1c enterprise | code | {"qsc_code_num_words": 416, "qsc_code_num_chars": 5871.0, "qsc_code_mean_word_length": 10.11298077, "qsc_code_frac_words_unique": 0.28125, "qsc_code_frac_chars_top_2grams": 0.1283575, "qsc_code_frac_chars_top_3grams": 0.11409556, "qsc_code_frac_chars_top_4grams": 0.14000475, "qsc_code_frac_chars_dupe_5grams": 0.4105063... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/uniprot/Text.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import json
import numpy as np
import pandas as pd
from pypropel.util.Writer import Writer as pfwriter
from pypropel.util.ComputLib import Co... | 11,285 | Text | py | en | python | code | {"qsc_code_num_words": 1114, "qsc_code_num_chars": 11285.0, "qsc_code_mean_word_length": 3.78904847, "qsc_code_frac_words_unique": 0.1427289, "qsc_code_frac_chars_top_2grams": 0.03411514, "qsc_code_frac_chars_top_3grams": 0.03198294, "qsc_code_frac_chars_top_4grams": 0.02274343, "qsc_code_frac_chars_dupe_5grams": 0.354... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗагрузкаПравилРегистрацииОбъектов/Forms/Форма.xml | <?xml version="1.0" encoding="UTF-8"?>
<MetaDataObject xmlns="http://v8.1c.ru/8.3/MDClasses" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:cmi="http://v8.1c.ru/8.2/managed-application/cmi" xmlns:ent="http://v8.1c.ru/8.1/data/enterprise" xm... | 1,493 | Форма | xml | ru | xml | data | {"qsc_code_num_words": 247, "qsc_code_num_chars": 1493.0, "qsc_code_mean_word_length": 4.24291498, "qsc_code_frac_words_unique": 0.32793522, "qsc_code_frac_chars_top_2grams": 0.08587786, "qsc_code_frac_chars_top_3grams": 0.11450382, "qsc_code_frac_chars_top_4grams": 0.14312977, "qsc_code_frac_chars_dupe_5grams": 0.4227... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗагрузкаПравилРегистрацииОбъектов/Forms/Форма/Ext/Form/Module.bsl | ///////////////////////////////////////////////////////////////////////////////////////////////////////
// Copyright (c) 2024, ООО 1С-Софт
// Все права защищены. Эта программа и сопроводительные материалы предоставляются
// в соответствии с условиями лицензии Attribution 4.0 International (CC BY 4.0)
// Текст лицензи... | 741 | Module | bsl | ru | 1c enterprise | code | {"qsc_code_num_words": 60, "qsc_code_num_chars": 741.0, "qsc_code_mean_word_length": 7.13333333, "qsc_code_frac_words_unique": 0.9, "qsc_code_frac_chars_top_2grams": 0.01401869, "qsc_code_frac_chars_top_3grams": 0.01869159, "qsc_code_frac_chars_top_4grams": 0.0, "qsc_code_frac_chars_dupe_5grams": 0.0, "qsc_code_frac_ch... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/alignment/Composition.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import numpy as np
from pypropel.prot.feature.alignment.frequency.Single import Single as fs
# from protein.tool.alignment.Reader import read... | 2,979 | Composition | py | en | python | code | {"qsc_code_num_words": 316, "qsc_code_num_chars": 2979.0, "qsc_code_mean_word_length": 5.14556962, "qsc_code_frac_words_unique": 0.43670886, "qsc_code_frac_chars_top_2grams": 0.08179582, "qsc_code_frac_chars_top_3grams": 0.02706027, "qsc_code_frac_chars_top_4grams": 0.02829028, "qsc_code_frac_chars_dupe_5grams": 0.0947... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/alignment/MSA.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
class MSA:
def __init__(
self,
msa_fpn,
):
"""
It provides elementary operations of parsing... | 1,274 | MSA | py | en | python | code | {"qsc_code_num_words": 120, "qsc_code_num_chars": 1274.0, "qsc_code_mean_word_length": 5.675, "qsc_code_frac_words_unique": 0.625, "qsc_code_frac_chars_top_2grams": 0.04405286, "qsc_code_frac_chars_top_3grams": 0.04405286, "qsc_code_frac_chars_top_4grams": 0.0, "qsc_code_frac_chars_dupe_5grams": 0.0, "qsc_code_frac_cha... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/alignment/InformationTheory.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import time
import numpy as np
import pandas as pd
from pypropel.prot.feature.alignment.frequency.Single import Single
from pypropel.prot.fea... | 3,029 | InformationTheory | py | en | python | code | {"qsc_code_num_words": 384, "qsc_code_num_chars": 3029.0, "qsc_code_mean_word_length": 3.79166667, "qsc_code_frac_words_unique": 0.2578125, "qsc_code_frac_chars_top_2grams": 0.07554945, "qsc_code_frac_chars_top_3grams": 0.04945055, "qsc_code_frac_chars_top_4grams": 0.05357143, "qsc_code_frac_chars_dupe_5grams": 0.30563... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/alignment/JSD.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import os
import subprocess
from pypropel.util.FileIO import FileIO
class JSD:
def __init__(
self,
order_list,... | 4,550 | JSD | py | en | python | code | {"qsc_code_num_words": 504, "qsc_code_num_chars": 4550.0, "qsc_code_mean_word_length": 4.59325397, "qsc_code_frac_words_unique": 0.3015873, "qsc_code_frac_chars_top_2grams": 0.03887689, "qsc_code_frac_chars_top_3grams": 0.0362851, "qsc_code_frac_chars_top_4grams": 0.03455724, "qsc_code_frac_chars_dupe_5grams": 0.057019... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗаявлениеНаВыпускНовогоКвалифицированногоСертификата/Ext/ManagerModule.bsl | ///////////////////////////////////////////////////////////////////////////////////////////////////////
// Copyright (c) 2024, ООО 1С-Софт
// Все права защищены. Эта программа и сопроводительные материалы предоставляются
// в соответствии с условиями лицензии Attribution 4.0 International (CC BY 4.0)
// Текст лицензи... | 60,267 | ManagerModule | bsl | ru | 1c enterprise | code | {"qsc_code_num_words": 4169, "qsc_code_num_chars": 60267.0, "qsc_code_mean_word_length": 11.55792756, "qsc_code_frac_words_unique": 0.17294315, "qsc_code_frac_chars_top_2grams": 0.00946353, "qsc_code_frac_chars_top_3grams": 0.0260247, "qsc_code_frac_chars_top_4grams": 0.00485628, "qsc_code_frac_chars_dupe_5grams": 0.37... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/alignment/Conservation.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import re
import numpy as np
import pandas as pd
from pypropel.util.Reader import Reader as pfreader
class Conservation:
def __ini... | 3,741 | Conservation | py | en | python | code | {"qsc_code_num_words": 436, "qsc_code_num_chars": 3741.0, "qsc_code_mean_word_length": 3.83715596, "qsc_code_frac_words_unique": 0.47247706, "qsc_code_frac_chars_top_2grams": 0.03586372, "qsc_code_frac_chars_top_3grams": 0.00537956, "qsc_code_frac_chars_top_4grams": 0.01315003, "qsc_code_frac_chars_dupe_5grams": 0.0621... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/alignment/Convert.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
from Bio import AlignIO
from pypropel.util.Reader import Reader as pfreader
from pypropel.util.Console import Console
class Convert:
d... | 2,856 | Convert | py | en | python | code | {"qsc_code_num_words": 334, "qsc_code_num_chars": 2856.0, "qsc_code_mean_word_length": 4.37724551, "qsc_code_frac_words_unique": 0.31137725, "qsc_code_frac_chars_top_2grams": 0.06155951, "qsc_code_frac_chars_top_3grams": 0.04103967, "qsc_code_frac_chars_top_4grams": 0.03898769, "qsc_code_frac_chars_dupe_5grams": 0.0807... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003scape/rsc-client | src/lib/net/file-download-stream.js | // a quick shim for downloading files
class FileDownloadStream {
constructor(file) {
this.url = file;
this.xhr = new XMLHttpRequest();
this.xhr.responseType = 'arraybuffer';
this.xhr.open('GET', file, true);
this.buffer = null;
this.pos = 0;
}
_loadResByte... | 1,172 | file-download-stream | js | en | javascript | code | {"qsc_code_num_words": 115, "qsc_code_num_chars": 1172.0, "qsc_code_mean_word_length": 4.91304348, "qsc_code_frac_words_unique": 0.50434783, "qsc_code_frac_chars_top_2grams": 0.11150442, "qsc_code_frac_chars_top_3grams": 0.0460177, "qsc_code_frac_chars_top_4grams": 0.0, "qsc_code_frac_chars_dupe_5grams": 0.0, "qsc_code... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003scape/rsc-client | src/lib/net/socket.js | // a shim for java.net.Socket
// https://docs.oracle.com/javase/7/docs/api/java/net/Socket.html
require('buffer');
const WorkerSocket = require('./worker-socket');
const CLOSE_TIMEOUT = 5000;
class Socket {
constructor(host, port) {
this.host = host;
this.port = port;
this.client = null... | 6,558 | socket | js | en | javascript | code | {"qsc_code_num_words": 556, "qsc_code_num_chars": 6558.0, "qsc_code_mean_word_length": 5.42985612, "qsc_code_frac_words_unique": 0.25359712, "qsc_code_frac_chars_top_2grams": 0.03179861, "qsc_code_frac_chars_top_3grams": 0.02782378, "qsc_code_frac_chars_top_4grams": 0.02285525, "qsc_code_frac_chars_dupe_5grams": 0.2272... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ВыполнениеОбменаДанными/Forms/Форма.xml | <?xml version="1.0" encoding="UTF-8"?>
<MetaDataObject xmlns="http://v8.1c.ru/8.3/MDClasses" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:cmi="http://v8.1c.ru/8.2/managed-application/cmi" xmlns:ent="http://v8.1c.ru/8.1/data/enterprise" xm... | 1,493 | Форма | xml | ru | xml | data | {"qsc_code_num_words": 247, "qsc_code_num_chars": 1493.0, "qsc_code_mean_word_length": 4.24291498, "qsc_code_frac_words_unique": 0.32793522, "qsc_code_frac_chars_top_2grams": 0.08587786, "qsc_code_frac_chars_top_3grams": 0.11450382, "qsc_code_frac_chars_top_4grams": 0.14312977, "qsc_code_frac_chars_dupe_5grams": 0.4227... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
2003100127/pypropel | pypropel/util/ComputLib.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
from typing import Any, Dict, List, Union
import itertools
class ComputLib:
def combo2x2(self, arr):
"""
repeated 2x2... | 3,003 | ComputLib | py | en | python | code | {"qsc_code_num_words": 401, "qsc_code_num_chars": 3003.0, "qsc_code_mean_word_length": 3.7605985, "qsc_code_frac_words_unique": 0.32917706, "qsc_code_frac_chars_top_2grams": 0.0331565, "qsc_code_frac_chars_top_3grams": 0.0265252, "qsc_code_frac_chars_top_4grams": 0.04244032, "qsc_code_frac_chars_dupe_5grams": 0.2811671... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/util/Reader.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import pandas as pd
class Reader:
def generic(
self,
df_fpn,
df_sep='\t',
skiprows=Non... | 1,111 | Reader | py | en | python | code | {"qsc_code_num_words": 109, "qsc_code_num_chars": 1111.0, "qsc_code_mean_word_length": 4.59633028, "qsc_code_frac_words_unique": 0.4587156, "qsc_code_frac_chars_top_2grams": 0.0499002, "qsc_code_frac_chars_top_3grams": 0.07185629, "qsc_code_frac_chars_top_4grams": 0.08383234, "qsc_code_frac_chars_dupe_5grams": 0.207584... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ВыполнениеОбменаДанными/Forms/Форма/Ext/Form.xml | <?xml version="1.0" encoding="UTF-8"?>
<Form xmlns="http://v8.1c.ru/8.3/xcf/logform" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:dcscor="http://v8.1c.ru/8.1/data-composition-system/core" xmlns:dcssch="http://v8.1c.ru/8.1/data-composition... | 59,326 | Form | xml | ru | xml | data | {"qsc_code_num_words": 5184, "qsc_code_num_chars": 59326.0, "qsc_code_mean_word_length": 7.08179012, "qsc_code_frac_words_unique": 0.15412809, "qsc_code_frac_chars_top_2grams": 0.03007191, "qsc_code_frac_chars_top_3grams": 0.02004794, "qsc_code_frac_chars_top_4grams": 0.03007191, "qsc_code_frac_chars_dupe_5grams": 0.54... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 1, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
2003100127/pypropel | pypropel/util/Evaluate.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import warnings
warnings.filterwarnings('ignore')
import numpy as np
from sklearn import metrics
class Evaluate:
def __init__(self, )... | 8,942 | Evaluate | py | en | python | code | {"qsc_code_num_words": 1335, "qsc_code_num_chars": 8942.0, "qsc_code_mean_word_length": 3.43595506, "qsc_code_frac_words_unique": 0.12734082, "qsc_code_frac_chars_top_2grams": 0.11118378, "qsc_code_frac_chars_top_3grams": 0.10987574, "qsc_code_frac_chars_top_4grams": 0.04796163, "qsc_code_frac_chars_dupe_5grams": 0.670... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/util/ListDiffer.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import pandas as pd
from pypropel.util.Reader import Reader as pfreader
from pypropel.util.Writer import Writer as pfwriter
from pypropel.uti... | 4,961 | ListDiffer | py | en | python | code | {"qsc_code_num_words": 667, "qsc_code_num_chars": 4961.0, "qsc_code_mean_word_length": 3.63718141, "qsc_code_frac_words_unique": 0.1814093, "qsc_code_frac_chars_top_2grams": 0.03792251, "qsc_code_frac_chars_top_3grams": 0.0370981, "qsc_code_frac_chars_top_4grams": 0.01978566, "qsc_code_frac_chars_dupe_5grams": 0.558120... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/alignment/frequency/Single.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import numpy as np
import pandas as pd
from pypropel.prot.sequence.Symbol import Symbol
class Single:
def __init__(
self,
... | 7,429 | Single | py | en | python | code | {"qsc_code_num_words": 927, "qsc_code_num_chars": 7429.0, "qsc_code_mean_word_length": 3.16720604, "qsc_code_frac_words_unique": 0.13915858, "qsc_code_frac_chars_top_2grams": 0.14066757, "qsc_code_frac_chars_top_3grams": 0.08174387, "qsc_code_frac_chars_top_4grams": 0.07867847, "qsc_code_frac_chars_dupe_5grams": 0.4472... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/alignment/frequency/Pair.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import numpy as np
from collections import Counter
from pypropel.prot.feature.alignment.symbol.Pair import Pair as pairalignsymbol
from pypro... | 2,288 | Pair | py | en | python | code | {"qsc_code_num_words": 290, "qsc_code_num_chars": 2288.0, "qsc_code_mean_word_length": 4.13103448, "qsc_code_frac_words_unique": 0.30689655, "qsc_code_frac_chars_top_2grams": 0.02504174, "qsc_code_frac_chars_top_3grams": 0.03338898, "qsc_code_frac_chars_top_4grams": 0.04006678, "qsc_code_frac_chars_dupe_5grams": 0.4031... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗаявлениеНаВыпускНовогоКвалифицированногоСертификата/Templates/Соглашение.xml | <?xml version="1.0" encoding="UTF-8"?>
<MetaDataObject xmlns="http://v8.1c.ru/8.3/MDClasses" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:cmi="http://v8.1c.ru/8.2/managed-application/cmi" xmlns:ent="http://v8.1c.ru/8.1/data/enterprise" xm... | 1,236 | Соглашение | xml | ru | xml | data | {"qsc_code_num_words": 223, "qsc_code_num_chars": 1236.0, "qsc_code_mean_word_length": 3.83856502, "qsc_code_frac_words_unique": 0.32735426, "qsc_code_frac_chars_top_2grams": 0.10514019, "qsc_code_frac_chars_top_3grams": 0.14018692, "qsc_code_frac_chars_top_4grams": 0.17523364, "qsc_code_frac_chars_dupe_5grams": 0.4287... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 1, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
2003100127/pypropel | pypropel/prot/feature/alignment/representation/Frequency.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import numpy as np
from collections import Counter
from pypropel.prot.feature.alignment.symbol.Single import Single as sglalignsymbol
class... | 1,598 | Frequency | py | en | python | code | {"qsc_code_num_words": 214, "qsc_code_num_chars": 1598.0, "qsc_code_mean_word_length": 4.24299065, "qsc_code_frac_words_unique": 0.3411215, "qsc_code_frac_chars_top_2grams": 0.04625551, "qsc_code_frac_chars_top_3grams": 0.0660793, "qsc_code_frac_chars_top_4grams": 0.04955947, "qsc_code_frac_chars_dupe_5grams": 0.037444... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/alignment/representation/Binary.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import numpy as np
class Binary:
def __init__(self, msa):
self.msa = msa
self.msa_row = len(self.msa)
self.msa... | 2,662 | Binary | py | en | python | code | {"qsc_code_num_words": 361, "qsc_code_num_chars": 2662.0, "qsc_code_mean_word_length": 2.87811634, "qsc_code_frac_words_unique": 0.22160665, "qsc_code_frac_chars_top_2grams": 0.08084697, "qsc_code_frac_chars_top_3grams": 0.16169394, "qsc_code_frac_chars_top_4grams": 0.18190568, "qsc_code_frac_chars_dupe_5grams": 0.5822... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 1, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/alignment/symbol/Pair.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
class Pair:
def __init__(
self,
msa,
):
self.msa = msa
self.msa_row = len(self.msa)
de... | 1,620 | Pair | py | en | python | code | {"qsc_code_num_words": 181, "qsc_code_num_chars": 1620.0, "qsc_code_mean_word_length": 3.46961326, "qsc_code_frac_words_unique": 0.33701657, "qsc_code_frac_chars_top_2grams": 0.07802548, "qsc_code_frac_chars_top_3grams": 0.07006369, "qsc_code_frac_chars_top_4grams": 0.03821656, "qsc_code_frac_chars_dupe_5grams": 0.2866... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/alignment/external/jsd/uniprotsp_piud.clustal | CLUSTAL O(1.2.4) multiple sequence alignment
piud MEKEVWEYTHRKKKVLKPPRDGKNQYKWGSSPRGMGRKCRHVQKLLAPLCVVLIVLVLVLLVALVAVQLQSCSSYPQFSHMCPDTWIGFQSKCYYFSENRNDWNTSLENCKALEASLTSIDSLEELAFIKHYTGQRNHWLGLHEEGDGQWRWTNRTAFNSWFEVWGGGPCAYLNQERISSAFCHTEKYWICSRPNNYVLWRQKISPE
Q80XD9 ----------------------------KTDL--------DCLKCLGCYGVIMV... | 26,705 | uniprotsp_piud | clustal | en | unknown | unknown | {} | 0 | {} |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗаявлениеНаВыпускНовогоКвалифицированногоСертификата/Forms/Форма.xml | <?xml version="1.0" encoding="UTF-8"?>
<MetaDataObject xmlns="http://v8.1c.ru/8.3/MDClasses" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:cmi="http://v8.1c.ru/8.2/managed-application/cmi" xmlns:ent="http://v8.1c.ru/8.1/data/enterprise" xm... | 1,493 | Форма | xml | ru | xml | data | {"qsc_code_num_words": 247, "qsc_code_num_chars": 1493.0, "qsc_code_mean_word_length": 4.24291498, "qsc_code_frac_words_unique": 0.32793522, "qsc_code_frac_chars_top_2grams": 0.08587786, "qsc_code_frac_chars_top_3grams": 0.11450382, "qsc_code_frac_chars_top_4grams": 0.14312977, "qsc_code_frac_chars_dupe_5grams": 0.4227... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
2003100127/pypropel | pypropel/util/FileIO.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import os
import re
import shutil
import pandas as pd
from pypropel.util.Reader import Reader as pfreader
from pypropel.util.Writer import Wr... | 8,180 | FileIO | py | en | python | code | {"qsc_code_num_words": 913, "qsc_code_num_chars": 8180.0, "qsc_code_mean_word_length": 4.22124863, "qsc_code_frac_words_unique": 0.16100767, "qsc_code_frac_chars_top_2grams": 0.06746238, "qsc_code_frac_chars_top_3grams": 0.03710431, "qsc_code_frac_chars_top_4grams": 0.04411002, "qsc_code_frac_chars_dupe_5grams": 0.5871... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ВыполнениеОбменаДанными/Forms/Форма/Ext/Form/Module.bsl | ///////////////////////////////////////////////////////////////////////////////////////////////////////
// Copyright (c) 2024, ООО 1С-Софт
// Все права защищены. Эта программа и сопроводительные материалы предоставляются
// в соответствии с условиями лицензии Attribution 4.0 International (CC BY 4.0)
// Текст лицензи... | 46,629 | Module | bsl | ru | 1c enterprise | code | {"qsc_code_num_words": 2631, "qsc_code_num_chars": 46629.0, "qsc_code_mean_word_length": 14.30482706, "qsc_code_frac_words_unique": 0.22424933, "qsc_code_frac_chars_top_2grams": 0.01578276, "qsc_code_frac_chars_top_3grams": 0.02210649, "qsc_code_frac_chars_top_4grams": 0.0153045, "qsc_code_frac_chars_dupe_5grams": 0.25... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/util/normalization/Standardize.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
class Standardize:
def __init__(self, ):
pass
def minmax(self, value, min, max):
return (value - min) / max - min
... | 1,100 | Standardize | py | en | python | code | {"qsc_code_num_words": 154, "qsc_code_num_chars": 1100.0, "qsc_code_mean_word_length": 3.31168831, "qsc_code_frac_words_unique": 0.52597403, "qsc_code_frac_chars_top_2grams": 0.04705882, "qsc_code_frac_chars_top_3grams": 0.05294118, "qsc_code_frac_chars_top_4grams": 0.0627451, "qsc_code_frac_chars_dupe_5grams": 0.0, "q... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/util/normalization/Activate.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import numpy as np
from scipy import stats
from sklearn.preprocessing import normalize
class Activate:
def __init__(self, ):
p... | 1,453 | Activate | py | en | python | code | {"qsc_code_num_words": 190, "qsc_code_num_chars": 1453.0, "qsc_code_mean_word_length": 3.91052632, "qsc_code_frac_words_unique": 0.53684211, "qsc_code_frac_chars_top_2grams": 0.04845222, "qsc_code_frac_chars_top_3grams": 0.03768506, "qsc_code_frac_chars_top_4grams": 0.04845222, "qsc_code_frac_chars_dupe_5grams": 0.1641... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/PSSM.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import time
import numpy as np
from pypropel.util.Console import Console
class PSSM:
def __init__(
self,
verbo... | 6,200 | PSSM | py | en | python | code | {"qsc_code_num_words": 737, "qsc_code_num_chars": 6200.0, "qsc_code_mean_word_length": 4.05698779, "qsc_code_frac_words_unique": 0.20488467, "qsc_code_frac_chars_top_2grams": 0.0361204, "qsc_code_frac_chars_top_3grams": 0.05150502, "qsc_code_frac_chars_top_4grams": 0.01170569, "qsc_code_frac_chars_dupe_5grams": 0.39030... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/feature/JSD.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import matplotlib.pyplot as plt
from pypropel.prot.feature.BasicUnit import BasicUnit
import numpy as np
class jsdconservation:
def __... | 12,871 | JSD | py | en | python | code | {"qsc_code_num_words": 1694, "qsc_code_num_chars": 12871.0, "qsc_code_mean_word_length": 3.78217237, "qsc_code_frac_words_unique": 0.12042503, "qsc_code_frac_chars_top_2grams": 0.09239894, "qsc_code_frac_chars_top_3grams": 0.01966599, "qsc_code_frac_chars_top_4grams": 0.02497269, "qsc_code_frac_chars_dupe_5grams": 0.79... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 1, "qsc... |
2003100127/pypropel | pypropel/prot/feature/BasicUnit.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import re
import pandas as pd
from pypropel.prot.feature.alignment.Conservation import Conservation as conser
class BasicUnit:
def __i... | 5,186 | BasicUnit | py | en | python | code | {"qsc_code_num_words": 684, "qsc_code_num_chars": 5186.0, "qsc_code_mean_word_length": 4.05555556, "qsc_code_frac_words_unique": 0.15350877, "qsc_code_frac_chars_top_2grams": 0.02883922, "qsc_code_frac_chars_top_3grams": 0.02018745, "qsc_code_frac_chars_top_4grams": 0.03460707, "qsc_code_frac_chars_dupe_5grams": 0.5951... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | pypropel/prot/plot/MetricFormatter.py | __author__ = "Jianfeng Sun"
__version__ = "v1.0"
__copyright__ = "Copyright 2024"
__license__ = "GPL v3.0"
__email__ = "jianfeng.sunmt@gmail.com"
__maintainer__ = "Jianfeng Sun"
import re
import json
import functools
import numpy as np
import pandas as pd
from pypropel.util.Reader import Reader as pfreader
from pyprop... | 5,482 | MetricFormatter | py | en | python | code | {"qsc_code_num_words": 801, "qsc_code_num_chars": 5482.0, "qsc_code_mean_word_length": 3.84769039, "qsc_code_frac_words_unique": 0.18851436, "qsc_code_frac_chars_top_2grams": 0.02336145, "qsc_code_frac_chars_top_3grams": 0.06164828, "qsc_code_frac_chars_top_4grams": 0.05451006, "qsc_code_frac_chars_dupe_5grams": 0.3705... | 1 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | docs/tutorial/Example/Pipeline-2-Drug-Target-Interaction-Prediction.md | In [this review](https://doi.org/10.1016/j.ejmech.2023.115500), we supplid a deep learning method, Drutai, for sequence-based drug discovery. It uses a dataset of **drug target interactions (DTIs)** downloaded from DrugBank with a version: 5.1.8. The proteins are from human. Now, we show an example of whether we could ... | 10,840 | Pipeline-2-Drug-Target-Interaction-Prediction | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.00073801, "qsc_doc_frac_words_redpajama_stop": 0.14879565, "qsc_doc_num_sentences": 219.0, "qsc_doc_num_words": 1684, "qsc_doc_num_chars": 10840.0, "qsc_doc_num_lines": 332.0, "qsc_doc_mean_word_length": 4.46199525, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_w... | 1 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 0, "qsc_doc_frac_chars_dupe_6grams": 0, "qsc_doc_frac_chars_dupe_7grams": 0, "qsc_doc_frac_chars_dupe_... |
2003100127/pypropel | docs/tutorial/protein/evaluation/sitewise-prediction.md | ## Interaction prediction
Protein residue sites involved in interaction are functionally important for cellular activities. They are generally defined as spatially closed residues in a protein complex. It would be easiest to obtain information of interaction sites from a protein complex structure _per se_. Thus, there... | 2,396 | sitewise-prediction | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.0033389, "qsc_doc_frac_words_redpajama_stop": 0.10307414, "qsc_doc_num_sentences": 21.0, "qsc_doc_num_words": 361, "qsc_doc_num_chars": 2396.0, "qsc_doc_num_lines": 53.0, "qsc_doc_mean_word_length": 4.44044321, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_with_r... | 1 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 0, "qsc_doc_frac_chars_dupe_6grams": 0, "qsc_doc_frac_chars_dupe_7grams": 0, "qsc_doc_frac_chars_dupe_... |
2003100127/pypropel | docs/tutorial/protein/external/JSD.md | ## 1. Download the JSD package
The standalone package of JSD can be downloaded at [https://compbio.cs.princeton.edu/conservation/](https://compbio.cs.princeton.edu/conservation/). The JSD package uses the Jensen-Shannon divergence for computing residue conservation based on a MSA.
!!! tip
The JSD output can be... | 2,083 | JSD | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.00192031, "qsc_doc_frac_words_redpajama_stop": 0.13657407, "qsc_doc_num_sentences": 31.0, "qsc_doc_num_words": 290, "qsc_doc_num_chars": 2083.0, "qsc_doc_num_lines": 74.0, "qsc_doc_mean_word_length": 4.67931034, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_with_... | 1 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 0, "qsc_doc_frac_chars_dupe_6grams": 0, "qsc_doc_frac_chars_dupe_7grams": 0, "qsc_doc_frac_chars_dupe_... |
2003100127/pypropel | docs/tutorial/protein/feature/rsa.md | ## Relative solvent accessibility
Relative solvent accessibility (RSA) is a metric used in structural biology to quantify the extent to which an amino acid residue in a protein is exposed to solvent, typically water. RSA offers insights into the environmental context of the residue and its potential functional roles w... | 2,267 | rsa | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.0, "qsc_doc_frac_words_redpajama_stop": 0.08487085, "qsc_doc_num_sentences": 49.0, "qsc_doc_num_words": 366, "qsc_doc_num_chars": 2267.0, "qsc_doc_num_lines": 106.0, "qsc_doc_mean_word_length": 4.09836066, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_with_readmo... | 1 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 0, "qsc_doc_frac_chars_dupe_6grams": 0, "qsc_doc_frac_chars_dupe_7grams": 0, "qsc_doc_frac_chars_dupe_... |
2003100127/pypropel | docs/tutorial/protein/feature/composition.md | ## Protein-level
In PyPropel, the function `fpseq` governs the extraction of features from the whole proteins. At the protein level, PyPropel considers compositions of amino acids across the whole protein sequence. It can be done below.
### AAC
AAC stands for the amino acid composition.
:material-language-python: Pyt... | 8,461 | composition | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.00094551, "qsc_doc_frac_words_redpajama_stop": 0.0238815, "qsc_doc_num_sentences": 154.0, "qsc_doc_num_words": 1505, "qsc_doc_num_chars": 8461.0, "qsc_doc_num_lines": 148.0, "qsc_doc_mean_word_length": 3.05249169, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_wit... | 0 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 0, "qsc_doc_frac_chars_dupe_6grams": 0, "qsc_doc_frac_chars_dupe_7grams": 0, "qsc_doc_frac_chars_dupe_... |
2003100127/pypropel | docs/tutorial/protein/feature/secondary-structure.md | ## Relative solvent accessibility
Secondary structure prediction methods are used to predict the local structures that form within a protein, specifically alpha helices, beta strands, and loops or turns. These predictions are essential for understanding protein function and guiding experimental structure determination... | 4,739 | secondary-structure | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.0, "qsc_doc_frac_words_redpajama_stop": 0.05276382, "qsc_doc_num_sentences": 154.0, "qsc_doc_num_words": 807, "qsc_doc_num_chars": 4739.0, "qsc_doc_num_lines": 163.0, "qsc_doc_mean_word_length": 3.64560099, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_with_readm... | 1 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 0, "qsc_doc_frac_chars_dupe_6grams": 0, "qsc_doc_frac_chars_dupe_7grams": 0, "qsc_doc_frac_chars_dupe_... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗаявлениеНаВыпускНовогоКвалифицированногоСертификата/Forms/ТехническаяИнформация/Ext/Form.xml | <?xml version="1.0" encoding="UTF-8"?>
<Form xmlns="http://v8.1c.ru/8.3/xcf/logform" xmlns:app="http://v8.1c.ru/8.2/managed-application/core" xmlns:cfg="http://v8.1c.ru/8.1/data/enterprise/current-config" xmlns:dcscor="http://v8.1c.ru/8.1/data-composition-system/core" xmlns:dcssch="http://v8.1c.ru/8.1/data-composition... | 9,344 | Form | xml | ru | xml | data | {"qsc_code_num_words": 1057, "qsc_code_num_chars": 9344.0, "qsc_code_mean_word_length": 6.10596026, "qsc_code_frac_words_unique": 0.1948912, "qsc_code_frac_chars_top_2grams": 0.04090487, "qsc_code_frac_chars_top_3grams": 0.03408739, "qsc_code_frac_chars_top_4grams": 0.03904555, "qsc_code_frac_chars_dupe_5grams": 0.5602... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 1, "qsc_code_mean_word_length": 0, "qsc_code_frac_words_unique": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗаявлениеНаВыпускНовогоКвалифицированногоСертификата/Forms/ТехническаяИнформация/Ext/Form/Module.bsl | ///////////////////////////////////////////////////////////////////////////////////////////////////////
// Copyright (c) 2024, ООО 1С-Софт
// Все права защищены. Эта программа и сопроводительные материалы предоставляются
// в соответствии с условиями лицензии Attribution 4.0 International (CC BY 4.0)
// Текст лицензи... | 4,706 | Module | bsl | ru | 1c enterprise | code | {"qsc_code_num_words": 353, "qsc_code_num_chars": 4706.0, "qsc_code_mean_word_length": 10.2266289, "qsc_code_frac_words_unique": 0.48441926, "qsc_code_frac_chars_top_2grams": 0.0199446, "qsc_code_frac_chars_top_3grams": 0.05955679, "qsc_code_frac_chars_top_4grams": 0.05207756, "qsc_code_frac_chars_dupe_5grams": 0.16675... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 1, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | docs/tutorial/protein/plot/interaction.md | We try to find the relationship between the number of interaction sites in proteins and their interaction partners. An example file is `ex.txt`. It looks like
``` text
prot_name chain_name num_db num_ip
1fft A 273 3
1fft B 314 2
1fft C 0 2
...
3d31 C 0 2
3eam A 1 2
```
!!! info
num_db: number of interaction site... | 1,053 | interaction | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.00189934, "qsc_doc_frac_words_redpajama_stop": 0.09469697, "qsc_doc_num_sentences": 24.0, "qsc_doc_num_words": 173, "qsc_doc_num_chars": 1053.0, "qsc_doc_num_lines": 45.0, "qsc_doc_mean_word_length": 4.12138728, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_with_... | 1 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 0, "qsc_doc_frac_chars_dupe_6grams": 0, "qsc_doc_frac_chars_dupe_7grams": 0, "qsc_doc_frac_chars_dupe_... |
1c-syntax/ssl_3_1 | src/cf/DataProcessors/ЗаявлениеНаВыпускНовогоКвалифицированногоСертификата/Forms/ВводПинКода/Ext/Form/Module.bsl | ///////////////////////////////////////////////////////////////////////////////////////////////////////
// Copyright (c) 2024, ООО 1С-Софт
// Все права защищены. Эта программа и сопроводительные материалы предоставляются
// в соответствии с условиями лицензии Attribution 4.0 International (CC BY 4.0)
// Текст лицензи... | 1,031 | Module | bsl | ru | 1c enterprise | code | {"qsc_code_num_words": 83, "qsc_code_num_chars": 1031.0, "qsc_code_mean_word_length": 8.04819277, "qsc_code_frac_words_unique": 0.74698795, "qsc_code_frac_chars_top_2grams": 0.00898204, "qsc_code_frac_chars_top_3grams": 0.01197605, "qsc_code_frac_chars_top_4grams": 0.0, "qsc_code_frac_chars_dupe_5grams": 0.0, "qsc_code... | 0 | {"qsc_code_frac_chars_replacement_symbols": 0, "qsc_code_num_words": 0, "qsc_code_num_chars": 0, "qsc_code_mean_word_length": 0, "qsc_code_frac_chars_top_2grams": 0, "qsc_code_frac_chars_top_3grams": 0, "qsc_code_frac_chars_top_4grams": 0, "qsc_code_frac_chars_dupe_5grams": 0, "qsc_code_frac_chars_dupe_6grams": 0, "qsc... |
2003100127/pypropel | docs/tutorial/protein/plot/evolution.md | We plot the results from three tools, `GraphPPIsv2`[^1], `JSD`[^2], and `MutPred2`[^3], to understand the evolution of residues from MSAs of 7 example proteins, that is,
``` text
ATAD2_LOC113841329
CYP2W1_LOC101804267
KIF27
KIF27_LOC113841629
LOC119718710
RBBP8NL
CAMK1G
```
[^1]: Qianmu Yuan, Jianwen Chen, Huiying Zh... | 3,561 | evolution | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.0028082, "qsc_doc_frac_words_redpajama_stop": 0.07282185, "qsc_doc_num_sentences": 54.0, "qsc_doc_num_words": 478, "qsc_doc_num_chars": 3561.0, "qsc_doc_num_lines": 97.0, "qsc_doc_mean_word_length": 5.24058577, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_with_r... | 1 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 0, "qsc_doc_frac_chars_dupe_6grams": 0, "qsc_doc_frac_chars_dupe_7grams": 0, "qsc_doc_frac_chars_dupe_... |
2003100127/pypropel | docs/tutorial/protein/plot/evaluation.md | Plotting evaluation metrics, such as ROCPR, are important for understanding predictive ability. In the current version, we can use PyPropel to draw ROCPR curves.
We use interaction predicted probabilities by the `tma300` tool.
`tma300_roc_fpr_custom.json` contains false positive rate (FPR) and `tma300_roc_tpr_custom.... | 1,234 | evaluation | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.00486224, "qsc_doc_frac_words_redpajama_stop": 0.06462585, "qsc_doc_num_sentences": 21.0, "qsc_doc_num_words": 183, "qsc_doc_num_chars": 1234.0, "qsc_doc_num_lines": 57.0, "qsc_doc_mean_word_length": 4.21857923, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_with_... | 1 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 0, "qsc_doc_frac_chars_dupe_6grams": 0, "qsc_doc_frac_chars_dupe_7grams": 0, "qsc_doc_frac_chars_dupe_... |
2003100127/pypropel | docs/tutorial/protein/uniprot/extract-information.md | # From text
The human proteome is downloaded from [UniProt - Reviewed Swiss-Prot](https://www.uniprot.org/uniprotkb?query=Human&facets=reviewed%3Atrue%2Cmodel_organism%3A9606). As of Jule 27th, 2024, it has compiled 20435 expert-reviewed human genes that encode proteins. As UniProt sequences in [Text](https://www.uni... | 5,336 | extract-information | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.0029985, "qsc_doc_frac_words_redpajama_stop": 0.08053691, "qsc_doc_num_sentences": 34.0, "qsc_doc_num_words": 499, "qsc_doc_num_chars": 5336.0, "qsc_doc_num_lines": 56.0, "qsc_doc_mean_word_length": 8.73146293, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_with_r... | 1 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 0, "qsc_doc_frac_chars_dupe_6grams": 0, "qsc_doc_frac_chars_dupe_7grams": 0, "qsc_doc_frac_chars_dupe_... |
2003100127/pypropel | docs/tutorial/protein/feature-vector/single-site.md |
We will need to install [TMKit](https://github.com/2003100127/tmkit)[^1] to read a protein sequence and create single-site positions, placed with windows. This will initiate the vector of features, and be prepared for being fed by site-wise features.
[^1]: Jianfeng Sun, Arulsamy Kulandaisamy, Jinlong Ru, M Michael Gr... | 2,878 | single-site | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.0, "qsc_doc_frac_words_redpajama_stop": 0.05674847, "qsc_doc_num_sentences": 29.0, "qsc_doc_num_words": 361, "qsc_doc_num_chars": 2878.0, "qsc_doc_num_lines": 128.0, "qsc_doc_mean_word_length": 5.31578947, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_with_readmo... | 1 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 0, "qsc_doc_frac_chars_dupe_6grams": 0, "qsc_doc_frac_chars_dupe_7grams": 0, "qsc_doc_frac_chars_dupe_... |
2003100127/pypropel | docs/tutorial/protein/feature-vector/pairwise-site.md |
We will need to install [TMKit](https://github.com/2003100127/tmkit)[^1] to read a protein sequence and create single-site positions, placed with windows. This will initiate the vector of features, and be prepared for being fed by site-wise features.
[^1]: Jianfeng Sun, Arulsamy Kulandaisamy, Jinlong Ru, M Michael Gr... | 3,132 | pairwise-site | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.0, "qsc_doc_frac_words_redpajama_stop": 0.0503876, "qsc_doc_num_sentences": 26.0, "qsc_doc_num_words": 415, "qsc_doc_num_chars": 3132.0, "qsc_doc_num_lines": 128.0, "qsc_doc_mean_word_length": 4.8746988, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_with_readmore... | 1 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 0, "qsc_doc_frac_chars_dupe_6grams": 0, "qsc_doc_frac_chars_dupe_7grams": 0, "qsc_doc_frac_chars_dupe_... |
2003100127/pypropel | docs/tutorial/protein/IO/dataset.md | We can generate a dataset of protein structures, XML, and sequences simutaneously using `pp.dataset.download_pack`.
!!! warning
`pdb_cplx_fp` must be use to direct `pp.dataset.download_pack` to a directory where protein complex structures are stored.
:material-language-python: Python
``` py linenums="1"
import ... | 3,922 | dataset | md | en | markdown | text | {"qsc_doc_frac_chars_curly_bracket": 0.00050994, "qsc_doc_frac_words_redpajama_stop": 0.05152471, "qsc_doc_num_sentences": 45.0, "qsc_doc_num_words": 585, "qsc_doc_num_chars": 3922.0, "qsc_doc_num_lines": 78.0, "qsc_doc_mean_word_length": 3.9982906, "qsc_doc_frac_words_full_bracket": 0.0, "qsc_doc_frac_lines_end_with_r... | 0 | {"qsc_doc_frac_chars_replacement_symbols": 0, "qsc_doc_entropy_unigram": 0, "qsc_doc_frac_chars_top_2grams": 0, "qsc_doc_frac_chars_top_3grams": 0, "qsc_doc_frac_chars_top_4grams": 0, "qsc_doc_frac_chars_dupe_5grams": 1, "qsc_doc_frac_chars_dupe_6grams": 1, "qsc_doc_frac_chars_dupe_7grams": 1, "qsc_doc_frac_chars_dupe_... |
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