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x1=0 x2=0 print("Classifying Kaggle's 'test.csv' using KNN where K=1 and MNIST 70k images.. ") for i in range(0,28000): for j in range(0,70000): if np.absolute(X_test[i,:]-mnist_image[j,:] ).sum() ==0: predictions[i]=mnist_label[j] if i%1000==0: print(" %d images classified perfectly"%(i),end="") if j<60000: x1+=1 el...
class MNISTDataset(Dataset): def __init__(self, feature, target=None, transform=None): self.X = feature self.y = target self.transform = transform def __len__(self): return len(self.X) def __getitem__(self, idx): if self.transform is not None: return self.transform(self.X[idx]), self.y[idx] elif self.y is None: retu...
Digit Recognizer
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final_pred = predictions[0:28000]<prepare_output>
data_transform = transforms.Compose([ transforms.ToPILImage() , transforms.RandomAffine(degrees=45, translate=(0.1, 0.1), scale=(0.8, 1.2)) , transforms.ToTensor() ]) train_set = MNISTDataset(featuresTrain.float() , targetsTrain, transform=data_transform) validate_set = MNISTDataset(featuresValidation.float() , targe...
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my_submission = pd.DataFrame({'ImageId':np.arange(28000),'Label':final_pred.squeeze().astype(np.int)}) my_submission.head()<feature_engineering>
train_set = torch.utils.data.TensorDataset(featuresTrain.float() , targetsTrain) validate_set = torch.utils.data.TensorDataset(featuresValidation.float() , targetsValidation) test_set = torch.utils.data.TensorDataset(Test.float() )
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my_submission["ImageId"]=my_submission["ImageId"]+1<save_to_csv>
train_loader = torch.utils.data.DataLoader(train_set, batch_size = batch_size, shuffle = True) validate_loader = torch.utils.data.DataLoader(validate_set, batch_size = batch_size, shuffle = False) test_loader = torch.utils.data.DataLoader(test_set, batch_size = batch_size, shuffle = False )
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my_submission.to_csv('best_submission.csv', index=False )<install_modules>
class CNNModel(nn.Module): def __init__(self): super(CNNModel, self ).__init__() self.cnn = nn.Sequential(nn.Conv2d(in_channels=1, out_channels=32, kernel_size=5), nn.ReLU(inplace=True), nn.Conv2d(in_channels=32, out_channels=32, kernel_size=5), nn.ReLU(inplace=True), nn.MaxPool2d(kernel_size=2), nn.Dropout(0.25), nn.C...
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! pip install.. /input/mlcollection/ml_collections-0.1.0-py3-none-any.whl<import_modules>
model = CNNModel() optimizer = optim.RMSprop(model.parameters() , lr=0.001, alpha=0.9) criterion = nn.CrossEntropyLoss() lr_reduction = optim.lr_scheduler.ReduceLROnPlateau(optimizer, mode='min', factor=0.5, patience=3, threshold=0.0001, threshold_mode='rel', cooldown=0, min_lr=0.00001) if torch.cuda.is_available() :...
Digit Recognizer
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from glob import glob from sklearn.model_selection import GroupKFold, StratifiedKFold import cv2 from skimage import io import torch from torch import nn import os from datetime import datetime import time import random import cv2 import torchvision from torchvision import transforms import pandas as pd import numpy as...
count = 0 loss_list = [] iteration_list = [] average_training_accuracy = [] average_validation_accuracy = [] average_training_loss = [] average_validation_loss = []
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CFG = { 'fold_num': 5, 'seed': 719, 'model_arch': 'resnext101_ibn_a', 'model_arch_eff':'tf_efficientnet_b4_ns', 'img_size': 512, 'epochs': 10, 'train_bs': 32, 'valid_bs': 32, 'lr': 1e-4, 'num_workers': 4, 'accum_iter': 1, 'verbose_step': 1, 'device': 'cuda' if torch.cuda.is_available() else 'cpu', 'tta': 4, } ckpt_path...
def train(epoch): global count model.train() for batch_idx,(data, target)in enumerate(train_loader): data, target = Variable(data), Variable(target) if torch.cuda.is_available() : data = data.cuda() target = target.cuda() optimizer.zero_grad() output = model(data) loss = criterion(output, target) loss.backward() opt...
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train = pd.read_csv('.. /input/cassava-leaf-disease-classification/train.csv') train.head()<count_values>
def evaluate(data_loader, validate=False): model.eval() loss = 0 correct = 0 for data, target in data_loader: data, target = Variable(data), Variable(target) if torch.cuda.is_available() : data = data.cuda() target = target.cuda() output = model(data) loss += F.cross_entropy(output, target, size_average=False ).item(...
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train.label.value_counts()<load_from_csv>
def prediciton(data_loader): model.eval() test_pred = torch.LongTensor() for i, data in enumerate(data_loader): data = Variable(data[0]) if torch.cuda.is_available() : data = data.cuda() output = model(data) pred = output.cpu().data.max(1, keepdim=True)[1] test_pred = torch.cat(( test_pred, pred), dim=0) return test...
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submission = pd.read_csv('.. /input/cassava-leaf-disease-classification/sample_submission.csv') submission.head()<categorify>
out_df = pd.DataFrame(np.c_[np.arange(1, len(test_set)+1)[:,None], test_pred.numpy() ], columns=['ImageId', 'Label']) out_df.head()
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<import_modules><EOS>
out_df.to_csv('submission.csv', index=False )
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<SOS> metric: categorizationaccuracy Kaggle data source: digit-recognizer<choose_model_class>
import torch import torchvision import pandas as pd import matplotlib.pyplot as plt import numpy as np from sklearn.model_selection import train_test_split import copy import time
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class CassvaImgClassifier(nn.Module): def __init__(self, model_arch, n_class, pretrained=False): super().__init__() self.model = timm.create_model(model_arch, pretrained=pretrained) n_features = self.model.classifier.in_features self.model.classifier = nn.Linear(n_features, n_class) def forward(self, x): x = self.mod...
torch.backends.cudnn.enabled
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class IBNResnextCassava(nn.Module): def __init__(self, arch='resnext101_ibn_a', n_class=5, pre=False): super().__init__() m = resnext101_ibn_a() self.enc = nn.Sequential(*list(m.children())[:-2]) nc = list(m.children())[-1].in_features self.head = nn.Sequential( nn.AdaptiveAvgPool2d(1), nn.Flatten() , nn.Linear(2048,...
device = torch.device("cuda" if torch.cuda.is_available() else "cpu") print(device )
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class MishFunction(torch.autograd.Function): @staticmethod def forward(ctx, x): ctx.save_for_backward(x) return x * torch.tanh(F.softplus(x)) @staticmethod def backward(ctx, grad_output): x = ctx.saved_variables[0] sigmoid = torch.sigmoid(x) tanh_sp = torch.tanh(F.softplus(x)) return grad_output *(tanh_sp + x * sigmo...
Num_CNN = 12 n_epochs = 25 batch_size_train = 64 batch_size_test = 1000 learning_rate = 0.01 momentum = 0.5 log_interval = 100 random_seed = 121 torch.manual_seed(random_seed) kaggle_input_data = "/kaggle/input/digit-recognizer/train.csv" kaggle_input_validation = "/kaggle/input/digit-recognizer/test.csv" kaggle_model...
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semi_weakly_supervised_model_urls = { 'resnet18': 'https://dl.fbaipublicfiles.com/semiweaksupervision/model_files/semi_weakly_supervised_resnet18-118f1556.pth', 'resnet50': 'https://dl.fbaipublicfiles.com/semiweaksupervision/model_files/semi_weakly_supervised_resnet50-16a12f1b.pth', 'resnext50_32x4d': 'https://dl.fbaip...
class Dataset(torch.utils.data.Dataset): def __init__(self, dataframe): self.labels = dataframe["label"].to_numpy() self.dataframe = dataframe.loc[:,dataframe.columns != "label"] def __len__(self): return self.dataframe.shape[0] def __getitem__(self, index): X = torch.from_numpy(self.dataframe.iloc[index].values.reshap...
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class CassvaImgClassifier(nn.Module): def __init__(self, model_arch, n_class, pretrained=False): super().__init__() self.model = create_model(model_arch, pretrained=pretrained) n_features = self.model.classifier.in_features self.model.classifier = nn.Linear(n_features, n_class) def forward(self, x): x = self.model(x)...
df_input = pd.read_csv(kaggle_input_data) df_validation = pd.read_csv(kaggle_input_validation) df_train, df_test = train_test_split(df_input, test_size = 0.01) training_set = Dataset(df_train) training_generator = torch.utils.data.DataLoader(training_set, batch_size = batch_size_train, shuffle = True) test_set = D...
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! pip install.. /input/mlcollection/ml_collections-0.1.0-py3-none-any.whl<feature_engineering>
import torch.nn as nn import torch.nn.functional as F import torch.optim as optim from torch.optim import lr_scheduler
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class AdaptiveConcatPool2d(nn.Module): "Layer that concats `AdaptiveAvgPool2d` and `AdaptiveMaxPool2d`" def __init__(self, size=None): super().__init__() self.size = size or 1 self.ap = nn.AdaptiveAvgPool2d(self.size) self.mp = nn.AdaptiveMaxPool2d(self.size) def forward(self, x): return torch.cat([self.mp(x), self.a...
class Net(nn.Module): def __init__(self): super(Net, self ).__init__() self.conv1 = nn.Conv2d(1, 32, kernel_size=3) self.batchnorm1 = nn.BatchNorm2d(32) self.conv2 = nn.Conv2d(32, 32, kernel_size=3) self.batchnorm2 = nn.BatchNorm2d(32) self.conv3 = nn.Conv2d(32, 32, kernel_size=2, stride = 2) self.batchnorm3 = nn....
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if __name__ == '__main__': VALID = False test_num = len(os.listdir('.. /input/cassava-leaf-disease-classification/test_images')) print('test_num:', test_num) seed_everything(CFG['seed']) folds = StratifiedKFold(n_splits=CFG['fold_num'], shuffle=True, random_state=CFG['seed'] ).split(np.arange(train.shape[0]), train.l...
train_losses = [] train_counter = [] test_losses = [] test_counter = [i*len(training_generator.dataset)for i in range(n_epochs + 1)] log_interval = len(training_generator) network_list = [] prediction_tensor = torch.zeros(kaggle_validation_set.shape[0],10 )
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test['label'] = np.argmax(tst_preds, axis=1) test.head()<save_to_csv>
def train(epoch, network, scheduler, network_id, device): start_time = time.time() network.train() for batch_idx,(data, target)in enumerate(training_generator): data = data.to(device) target = target.to(device) optimizer.zero_grad() output = network(data) loss = F.nll_loss(output, target) loss.backward() optimizer....
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test.to_csv('submission.csv', index=False )<install_modules>
validation_tensor = kaggle_validation_set.to(device) prediction_tensor = prediction_tensor.to(device) for id_net in range(1, Num_CNN+1): network, optimizer, scheduler = initialise_network(device) for epoch in range(1, n_epochs+1): train(epoch, network, scheduler, id_net, device) test(network) prediction_tensor = v...
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!pip install -q '/kaggle/input/birdcall-identification-submission-custom/Keras_Applications-1.0.8-py3-none-any.whl' !pip install -q '/kaggle/input/birdcall-identification-submission-custom/efficientnet-1.1.0-py3-none-any.whl'<import_modules>
output_df = prediction_tensor.max(1)[1].to("cpu") output_df = pd.DataFrame(output_df.numpy() , columns = ["Label"]) output_df.index.name = "ImageId" output_df.index = output_df.index + 1
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import numpy as np import pandas as pd import tensorflow as tf import efficientnet.tfkeras as efn import matplotlib.pyplot as plt from tqdm.notebook import tqdm<define_search_space>
output_df.to_csv(prediction_path )
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IMG_HEIGHT = 600 IMG_WIDTH = 800 IMG_SIZE = 600 IMG_TARGET_SIZE = 512 N_CHANNELS = 3 N_LABELS = 5 N_FOLDS = 5 BATCH_SIZE = 16 AUTO = tf.data.experimental.AUTOTUNE IMAGENET_MEAN = tf.constant([0.485, 0.456, 0.406], dtype=tf.float32) IMAGENET_STD = tf.constant([0.229, 0.224, 0.225], dtype=tf.float32 )<choose_model_class...
df = pd.read_csv('/kaggle/input/digit-recognizer/train.csv') df2 = pd.read_csv('/kaggle/input/digit-recognizer/test.csv') print(df.shape) print(df2.shape )
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def get_model(fold): tf.keras.backend.clear_session() net = efn.EfficientNetB4( include_top=False, weights=None, input_shape=(IMG_TARGET_SIZE, IMG_TARGET_SIZE, N_CHANNELS), ) for layer in reversed(net.layers): if isinstance(layer, tf.keras.layers.BatchNormalization): layer.trainable = False else: layer.trainable = T...
scaler = MinMaxScaler() x = scaler.fit_transform(x) x
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@tf.function def decode_tfrecord_test(file_path): image = tf.io.read_file(file_path) image = tf.io.decode_jpeg(image) image = tf.reshape(image, [IMG_HEIGHT, IMG_WIDTH, N_CHANNELS]) image = tf.cast(image, tf.float32) image_id = tf.strings.split(file_path, '/')[-1] return image, image_id<define_variables>
x1 = np.array(df2) x1 = scaler.fit_transform(x1) x1 = x1.reshape(( 28000,28,28,1)) x1.shape
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def get_test_dataset() : ignore_order = tf.data.Options() ignore_order.experimental_deterministic = False test_dataset = tf.data.Dataset.list_files('/kaggle/input/cassava-leaf-disease-classification/test_images/*.jpg') test_dataset = test_dataset.with_options(ignore_order) test_dataset = test_dataset.map(decode_tfrec...
y = np.array(y) enc = OneHotEncoder(sparse=False) y= y.reshape(( -1,1)) y = enc.fit_transform(y) y.shape
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def show_first_test_batch() : imgs, imgs_ids = next(iter(get_test_dataset())) img = imgs[0].numpy().astype(np.float32) print(f'imgs.shape: {imgs.shape}, imgs.dtype: {imgs.dtype}, imgs_ids.shape: {imgs_ids.shape}, imgs_ids.dtype: {imgs_ids.dtype}') print('img mean: {:.3f}, img std {:.3f}, img min: {:.3f}, img max: {:....
x_train,x_test,y_train,y_test = tts(x,y,test_size = 0.2, random_state=42) print(x_train.shape) print(y_train.shape) print(x_test.shape) print(y_test.shape )
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submission = pd.DataFrame(columns=['image_id', 'label']) preds_dict = dict() for fold in range(N_FOLDS): model = get_model(fold) for idx,(imgs, image_ids)in tqdm(enumerate(get_test_dataset())) : for img, image_id in zip(imgs, image_ids.numpy().astype(str)) : pred = predict_tta(model, img) if image_id in preds_dict: ...
import tensorflow as tf from tensorflow import keras from tensorflow.keras import layers import matplotlib.pyplot as plt from keras.models import Sequential from keras.layers import Dense, Dropout, Flatten, Conv2D, MaxPool2D from keras.optimizers import RMSprop from keras.preprocessing.image import ImageDataGenerator f...
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import numpy as np import pandas as pd import os <install_modules>
model = keras.Sequential() model.add(Conv2D(filters = 32, kernel_size =(5,5),padding = 'Same', activation ='relu', input_shape =(28,28,1))) model.add(Conv2D(filters = 32, kernel_size =(5,5),padding = 'Same', activation ='relu')) model.add(MaxPool2D(pool_size=(2,2))) model.add(Dropout(0.25)) model.add(Conv2D(filters =...
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!pip install timm --no-index --find-links=file:///kaggle/input/timm-package/<install_modules>
callbacks = [ keras.callbacks.EarlyStopping( monitor='val_loss', min_delta=1e-5, patience=25, verbose=1) ]
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!pip install albumentations --no-index --find-links=file:///kaggle/input/albumentationspackage/<import_modules>
predictions=model.predict(x1) pre=predictions.argmax(axis=-1 )
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import sys import torch import torch.nn.functional as F import torch.nn as nn from torch.nn import Parameter import os import cv2 import timm<import_modules>
submission = pd.Series(pre,name="Label") submission = pd.concat([pd.Series(range(1,28001),name = "ImageId"),submission],axis = 1) submission.to_csv("final_submission_v1.csv",index=False) submission.head()
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import albumentations as A<normalization>
from sklearn.model_selection import train_test_split import tensorflow as tf from tensorflow.keras import layers, Sequential, optimizers from tensorflow.keras.preprocessing.image import ImageDataGenerator from tensorflow.keras.utils import to_categorical import matplotlib.pyplot as plt
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def gem(x, p=3, eps=1e-5): return F.avg_pool2d(x.clamp(min=eps ).pow(p),(x.size(-2), x.size(-1)) ).pow(1./p) class GeM(nn.Module): def __init__(self, p=3, eps=1e-5): super(GeM, self ).__init__() self.p = Parameter(torch.ones(1)* p) self.eps = eps def forward(self, x): return gem(x, p=self.p, eps=self.eps) def __repr...
print("GPUs Available: ", tf.config.experimental.list_physical_devices('GPU'))
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class Net(nn.Module): def __init__(self, num_classes=5): super().__init__() self.model = timm.create_model('seresnext50_32x4d', pretrained=False) self._avg_pooling = nn.AdaptiveAvgPool2d(1) self.dropout=nn.Dropout(0.5) self._fc = nn.Linear(2048 , num_classes, bias=True) def forward(self, inputs): input_iid = inputs...
raw_csv = "/kaggle/input/digit-recognizer/train.csv" test_csv = "/kaggle/input/digit-recognizer/test.csv"
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class DatasetTest() : def __init__(self, test_data_dir): self.ds = self.get_list(test_data_dir) self.root_dir = test_data_dir self.val_trans=A.Compose([A.HorizontalFlip(p=0.5), A.VerticalFlip(p=0.5), A.ColorJitter(brightness=0.1, contrast=0.2, saturation=0.2, hue=0.00, always_apply=False, p=1.0), A.RandomCrop(height= ...
raw_df = pd.read_csv(raw_csv) test_df = pd.read_csv(test_csv )
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device = torch.device("cuda" if torch.cuda.is_available() else "cpu") kaggle_root = '/kaggle/input' model_dir = os.path.join(kaggle_root, 'cassva-models-se50-640') weights = [os.path.join(model_dir, f)for f in os.listdir(model_dir)] test_datadir= os.path.join(kaggle_root, 'cassava-leaf-disease-classification/test_ima...
def get_image_and_label(data_frame): IMGs = data_frame.drop(["label"], axis=1 ).values if 'label' in data_frame.columns else data_frame.values IMGs = np.array([image.reshape(( 28, 28)) for image in IMGs]) IMGs = np.expand_dims(IMGs, axis=3) labels = data_frame['label'].values if 'label' in data_frame.columns else Non...
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package_path = '.. /input/pytorch-image-models/pytorch-image-models-master' sys.path.append(package_path )<set_options>
raw_IMGs, raw_labels = get_image_and_label(raw_df) test_IMGs, _ = get_image_and_label(test_df )
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warnings.filterwarnings("ignore") <init_hyperparams>
classes = len(set(raw_labels)) classes
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CFG = { 'fold_num': 5, 'seed': 719, 'model_arch': 'tf_efficientnet_b4_ns', 'img_size': 512, 'epochs': 10, 'train_bs': 32, 'valid_bs': 32, 'lr': 1e-4, 'num_workers': 4, 'accum_iter': 1, 'verbose_step': 1, 'device': 'cuda:0', 'tta': 3, 'used_epochs': [6,7,8,9], 'weights': [1,1,1,1] }<load_from_csv>
raw_labels = to_categorical(raw_labels, num_classes=classes) raw_labels
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train = pd.read_csv('.. /input/cassava-leaf-disease-classification/train.csv') train.head(10 )<count_values>
train_IMGs, validation_IMGs, trian_labels, validation_labels = train_test_split(raw_IMGs, raw_labels, test_size=0.1, random_state=42 )
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train.label.value_counts()<load_from_csv>
model = Sequential([ layers.Conv2D(32,(3,3), activation="relu", input_shape=(28,28,1)) , layers.BatchNormalization() , layers.MaxPooling2D(( 2,2)) , layers.Conv2D(64,(3,3), activation="relu"), layers.BatchNormalization() , layers.MaxPooling2D(( 2,2)) , layers.Conv2D(128,(3,3), activation="relu"), layers.BatchNormalizat...
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submission = pd.read_csv('.. /input/cassava-leaf-disease-classification/sample_submission.csv') submission.head()<set_options>
model.compile(loss="categorical_crossentropy", optimizer=optimizers.Adam(learning_rate=1e-4), metrics=['accuracy'] )
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def seeder(seed): random.seed(seed) os.environ['PYTHONHASHSEED'] = str(seed) np.random.seed(seed) torch.manual_seed(seed) torch.cuda.manual_seed(seed) torch.backends.cudnn.deterministic = True torch.backends.cudnn.benchmark = True def get_img(path): im_bgr = cv2.imread(path) im_rgb = im_bgr[:, :, ::-1] return im_...
train_datagen = ImageDataGenerator( rescale=1/255, rotation_range=20, width_shift_range=0.1, height_shift_range=0.1, zoom_range=0.1, shear_range=0.1 ) validation_datagen = ImageDataGenerator(rescale=1/255) test_datagen = ImageDataGenerator(rescale=1/255 )
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img = get_img('.. /input/cassava-leaf-disease-classification/train_images/1000015157.jpg') plt.figure(figsize=(15,15)) plt.imshow(img) plt.show()<categorify>
train_generator = train_datagen.flow(train_IMGs, trian_labels, batch_size=32) validation_generator = train_datagen.flow(validation_IMGs, validation_labels, batch_size=32) test_generator = test_datagen.flow(test_IMGs, batch_size=32, shuffle=False )
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class CassavaDataset(Dataset): def __init__(self,df,data_root,transforms=None,output_label=True): super(CassavaDataset ).__init__() self.df=df.reset_index().copy() self.data_root=data_root self.transforms=transforms self.output_label=output_label def __len__(self): return self.df.shape[0] def __getitem__(self,index:int...
history = model.fit_generator(train_generator, epochs=100, validation_data=validation_generator, verbose=1 )
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HorizontalFlip, VerticalFlip, IAAPerspective, ShiftScaleRotate, CLAHE, RandomRotate90, Transpose, ShiftScaleRotate, Blur, OpticalDistortion, GridDistortion, HueSaturationValue, IAAAdditiveGaussianNoise, GaussNoise, MotionBlur, MedianBlur, IAAPiecewiseAffine, RandomResizedCrop, IAASharpen, IAAEmboss, RandomBrightnessCon...
model.evaluate(validation_IMGs, validation_labels )
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class CassvaImgClassifier(nn.Module): def __init__(self, model_arch, n_class, pretrained=False): super().__init__() self.model = timm.create_model(model_arch, pretrained=pretrained) n_features = self.model.classifier.in_features self.model.classifier = nn.Linear(n_features, n_class) def forward(self, x): x = self.mod...
accuracy = history.history["accuracy"] val_accuracy = history.history["val_accuracy"] loss = history.history["loss"] val_loss = history.history["val_loss"] epochs = range(len(accuracy))
Digit Recognizer
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if __name__ == "__main__": seeder(CFG["seed"]) folds = StratifiedKFold(n_splits=CFG['fold_num'] ).split(np.arange(train.shape[0]), train.label.values) for fold,(trn_idx, val_idx)in enumerate(folds): if fold > 0: break print('Inference fold {} started'.format(fold)) test = pd.DataFrame() test['image_id'] = list(os.lis...
pred_labels = model.predict_generator(test_generator )
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test['label'] = np.argmax(tst_preds, axis=1) test.head()<save_to_csv>
pred_labels = np.argmax(pred_labels, axis=-1) pred_labels
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test.to_csv('submission.csv', index=False )<import_modules>
my_submission = pd.DataFrame({'ImageId': test_df.index + 1, 'Label': pred_labels}) my_submission.head()
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<install_modules><EOS>
my_submission.to_csv('submission.csv', index=False )
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<SOS> metric: categorizationaccuracy Kaggle data source: digit-recognizer<import_modules>
%matplotlib inline
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HorizontalFlip, VerticalFlip, IAAPerspective, ShiftScaleRotate, CLAHE, RandomRotate90, Transpose, ShiftScaleRotate, Blur, OpticalDistortion, GridDistortion, HueSaturationValue, IAAAdditiveGaussianNoise, GaussNoise, MotionBlur, MedianBlur, IAAPiecewiseAffine, RandomResizedCrop, IAASharpen, IAAEmboss, RandomBrightnessCon...
train = pd.read_csv('.. /input/digit-recognizer/train.csv') test = pd.read_csv('.. /input/digit-recognizer/test.csv' )
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package_path = '.. /input/pytorch-image-models/pytorch-image-models-master' train = pd.read_csv('.. /input/cassava-leaf-disease-classification/train.csv') submission = pd.read_csv('.. /input/cassava-leaf-disease-classification/sample_submission.csv' )<init_hyperparams>
Y_train=train['label'] X_train = train.drop(labels = ["label"],axis = 1) Y_train.value_counts()
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CFG = { 'normalize_mean':[0.42984136, 0.49624753, 0.3129598], 'normalize_std':[0.21417203, 0.21910103, 0.19542212], 'device': 'cuda:0', 'fold_num': 5, 'seed': 42, 'valid_bs': 32, 'num_workers': 4, 'model_arch': ['tf_efficientnet_b4_ns', 'tf_efficientnet_b4_ns', 'tf_efficientnet_b4_ns', 'tf_efficientnet_b4_ns', 'tf_effi...
X_train = X_train / 255 test = test / 255
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def seed_everything(seed): random.seed(seed) os.environ['PYTHONHASHSEED'] = str(seed) np.random.seed(seed) torch.manual_seed(seed) torch.cuda.manual_seed(seed) torch.backends.cudnn.deterministic = True torch.backends.cudnn.benchmark = False torch.cuda.manual_seed_all(seed) def get_img(path): im_bgr = cv2.imread(p...
print("The shape of the labels before One Hot Encoding",Y_train.shape) Y_train = to_categorical(Y_train, num_classes = 10) print("The shape of the labels after One Hot Encoding",Y_train.shape )
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class CassavaDataset(Dataset): def __init__( self, df, data_root, transforms=None, output_label=True ): super().__init__() self.df = df.reset_index(drop=True ).copy() self.transforms = transforms self.data_root = data_root self.output_label = output_label def __len__(self): return self.df.shape[0] def __getitem__(sel...
random_seed = 2 X_train, X_val, Y_train, Y_val = train_test_split(X_train, Y_train, test_size = 0.3, random_state=random_seed )
Digit Recognizer
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HorizontalFlip, VerticalFlip, IAAPerspective, ShiftScaleRotate, CLAHE, RandomRotate90, Transpose, ShiftScaleRotate, Blur, OpticalDistortion, GridDistortion, HueSaturationValue, IAAAdditiveGaussianNoise, GaussNoise, MotionBlur, MedianBlur, IAAPiecewiseAffine, RandomResizedCrop, IAASharpen, IAAEmboss, RandomBrightnessCon...
datagen = ImageDataGenerator(zoom_range = 0.1, width_shift_range = 0.1, height_shift_range = 0.1, rotation_range = 10 )
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class CassvaImgClassifier(nn.Module): def __init__(self, model_arch, n_class, pretrained=False): super().__init__() self.model = timm.create_model(model_arch, pretrained=pretrained, num_classes=5) def forward(self, x): x = self.model(x) return x<create_dataframe>
model = Sequential() model.add(Conv2D(filters = 32, kernel_size =(3, 3), activation = 'relu', input_shape =(28, 28, 1))) model.add(BatchNormalization()) model.add(Conv2D(filters = 32, kernel_size =(3, 3), activation = 'relu')) model.add(BatchNormalization()) model.add(Conv2D(filters = 32, kernel_size =(5, 5), activa...
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seed_everything(CFG['seed']) tst_preds = [] device = torch.device(CFG['device']) test = pd.DataFrame() test['image_id'] = list(os.listdir('.. /input/cassava-leaf-disease-classification/test_images/')) for i, sub_model in enumerate(CFG['used_epochs']): if "vit" not in sub_model: test_ds = CassavaDataset(test, '.. /inp...
model.compile(optimizer='adam',metrics=['accuracy'],loss='categorical_crossentropy' )
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test['label'] = np.argmax(tst_preds, axis=1) test.to_csv('submission.csv', index=False )<install_modules>
reduction_lr = ReduceLROnPlateau(monitor='val_accuracy',patience=2, verbose=1, factor=0.2, min_lr=0.00001 )
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!mkdir -p /tmp/pip/cache/ !cp.. /input/omegaconf/PyYAML-5.4b2-cp38-cp38-manylinux1_x86_64.whl /tmp/pip/cache/ !cp.. /input/omegaconf/omegaconf-2.0.5-py3-none-any.whl /tmp/pip/cache/ !cp.. /input/omegaconf/typing_extensions-3.7.4.3-py3-none-any.whl /tmp/pip/cache/ !pip install --no-index --find-links /tmp/pip/cache/ ome...
hist = model.fit_generator(datagen.flow(X_train,Y_train,batch_size=32),epochs=20,validation_data =(X_val,Y_val),callbacks=[reduction_lr] )
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sys.path.append('.. /input/timm-pytorch-image-models/pytorch-image-models-master') sys.path.append(".. /input/cleanlab/") warnings.filterwarnings('ignore') <set_options>
final_loss, final_acc = model.evaluate(X_val, Y_val, verbose=0) print("Final loss: {0:.4f}, final accuracy: {1:.4f}".format(final_loss, final_acc))
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mean, std =(0.485, 0.456, 0.406),(0.229, 0.224, 0.225) def get_transforms(img_size=(512, 512)) : transformations = Compose([ PadIfNeeded(min_height=img_size[0], min_width=img_size[1]), CenterCrop(img_size[0], img_size[1]), Normalize(mean=mean, std=std, max_pixel_value=255.0, p=1.0), ToTensorV2(p=1.0), ], p=1.0) retur...
y_pred = model.predict(X_val, batch_size = 64) y_pred = np.argmax(y_pred,axis = 1) y_pred = pd.Series(y_pred,name="Label") y_pred
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def create_model(model_name: str, pretrained: bool, num_classes: int, in_chans: int): model = timm.create_model(model_name=model_name, pretrained=pretrained, num_classes=num_classes, in_chans=in_chans) return model<load_pretrained>
y_pred1 = model.predict(test, batch_size = 64) y_pred1 = np.argmax(y_pred1,axis = 1) y_pred1 = pd.Series(y_pred1,name="Label") y_pred1
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<find_best_params><EOS>
submission = pd.concat([pd.Series(range(1,28001),name = "ImageId"),y_pred1],axis = 1) submission.to_csv("submission.csv",index=False )
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<SOS> metric: categorizationaccuracy Kaggle data source: digit-recognizer<define_search_space>
from matplotlib import pyplot as plt import math, os, re, time, random import numpy as np, pandas as pd, seaborn as sns import tensorflow as tf from sklearn.model_selection import train_test_split
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eff_b0_cfg_s = eff_b0_cfg = OmegaConf.create(eff_b0_cfg_s )<define_variables>
rank_0_tensor = tf.constant(1) print(rank_0_tensor); print('') rank_1_tensor = tf.constant([1, 0, 0]) print(rank_1_tensor); print('') rank_2_tensor = tf.constant([[1, 0, 0], [0, 1, 0], [0, 0, 1]]) print(rank_2_tensor )
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name = '14-10-36' cfg = eff_b0_cfg do_predict = True do_submit = True img_dir = '.. /input/cassava-leaf-disease-merged/train/' label_path = '.. /input/cassava-leaf-disease-merged/merged.csv' log_dir = os.path.join('.. /input/cassava-public-ckpt', name) n_folds = len(glob(os.path.join(log_dir, 'checkpoints/*.ckpt'))) ...
rank_0_tensor = tf.constant(1, dtype = tf.float16) print(rank_0_tensor); print('') rank_1_tensor = tf.constant([1, 0, 0], dtype = tf.float32) print(rank_1_tensor); print('') rank_2_tensor = tf.constant([[1, 0, 0], [0, 1, 0], [0, 0, 1]], dtype = tf.int32) print(rank_2_tensor )
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seed_everything(42) label_df = pd.read_csv(label_path) if 'fold' not in label_df.columns: skf = StratifiedKFold(n_splits=5, shuffle=True) label_df.loc[:, 'fold'] = 0 for fold_num,(train_index, val_index)in enumerate(skf.split(X=label_df.index, y=label_df.label.values)) : label_df.loc[label_df.iloc[val_index].index, ...
print(type(rank_2_tensor.numpy())) print(rank_2_tensor.numpy()); print('') tensor_to_array = np.add(rank_2_tensor, 1) print(type(tensor_to_array)) print(tensor_to_array); print('') array_to_tensor = tf.add(rank_2_tensor.numpy() , 1) print(array_to_tensor )
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if do_submit: sub = pd.read_csv('.. /input/cassava-leaf-disease-classification/sample_submission.csv') infer = pl.Trainer(gpus=1) test_dataset = TestDataset('.. /input/cassava-leaf-disease-classification/test_images', sub, img_size=cfg.img_size) test_dataloader = DataLoader(test_dataset, batch_size=cfg.batch_size, n...
model = tf.keras.models.Sequential() model.add(tf.keras.layers.Dense(256, activation='relu', input_shape =(784,))) model.add(tf.keras.layers.Dense(128, activation='swish')) model.add(tf.keras.layers.Dense(10, activation='softmax')) model.compile(optimizer="adam", loss="categorical_crossentropy", metrics=["categorical_...
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label_df = label_df.sort_values(by='image_id', ascending=1) pred_df = pred_df.sort_values(by='image_id', ascending=1) ids, labels = label_df.image_id.values, label_df.label.values preds = np.array([literal_eval(pred)if isinstance(pred, str)else pred for pred in pred_df.label.values]) print(f'total {len(ids)} images'...
model = tf.keras.models.Sequential([ tf.keras.layers.Dense(256, activation = 'relu', input_shape =(784,)) , tf.keras.layers.Dense(128, activation = 'swish'), tf.keras.layers.Dense(10, activation = 'softmax') ]) model.compile(optimizer = "adam", loss = "categorical_crossentropy", metrics = ["categorical_accuracy"]) m...
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s = labels psx = preds K = len(np.unique(s)) thresholds = [np.mean(psx[:,k][s == k])for k in range(K)] thresholds = np.asarray(thresholds) confident_joint = np.zeros(( K, K), dtype = int) for i, row in enumerate(psx): s_label = s[i] confident_bins = row >= thresholds - 1e-6 num_confident_bins = sum(confident_bins) i...
inputs = tf.keras.Input(shape =(784,)) x = tf.keras.layers.Dense(256, activation = 'relu' )(inputs) x = tf.keras.layers.Dense(128, activation = 'swish' )(x) outputs = tf.keras.layers.Dense(10, activation = 'softmax' )(x) model = tf.keras.Model(inputs = inputs, outputs = outputs) model.compile(optimizer = "adam", lo...
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total_idx = np.arange(len(ids)) clean_idx = np.array([idx for idx in total_idx if idx not in label_errors_idx]) guesses = np.stack(noise_masks_per_class ).argmax(axis=0) guesses[clean_idx] = labels[clean_idx] clean_ids = ids[clean_idx] clean_labels = labels[clean_idx] clean_guesses = guesses[clean_idx] noisy_ids = id...
train = pd.read_csv('.. /input/digit-recognizer/train.csv') test = pd.read_csv('.. /input/digit-recognizer/test.csv') train.head()
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all_data = pd.DataFrame({'image_id': ids, 'given_label': labels, 'guess_label': guesses}) all_data['is_noisy'] =(all_data.given_label != all_data.guess_label) all_data['max_prob'] = preds.max(axis=1 )<define_variables>
labels = train['label'] train = train.drop('label', axis = 1) train = train / 255.0 test = test / 255.0
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class_colors = np.array([' num2class = [f'{idx}-{elem}' for idx, elem in enumerate(num2class)]<load_pretrained>
labels = tf.one_hot(labels, depth = 10 ).numpy()
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with open('.. /input/train-weights-optimization/best_weights.json', 'r')as f: weights_dict = json.load(f) weights_dict<load_pretrained>
datagen = tf.keras.preprocessing.image.ImageDataGenerator( rotation_range = 20, zoom_range = 0.1, width_shift_range = 0.1, height_shift_range = 0.1 )
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normal_configs = [] tta_configs = [] normal_model_dirs = [] tta_model_dirs = [] for model_dir in weights_dict.keys() : assert len(glob.glob(f'{model_dir}/*.yml')) ==1 config_path = glob.glob(f'{model_dir}/*.yml')[0] with open(config_path)as f: config = yaml.load(f) if 'valid_augmentation' in config['tag'].keys() : tta...
EPOCHS = 45 BATCH_SIZE = 64 NUM_NETS = 25 VERBOSE = 0
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def get_score(y_true, y_pred): return accuracy_score(y_true, y_pred) @contextmanager def timer(name): t0 = time.time() LOGGER.info(f'[{name}] start') yield LOGGER.info(f'[{name}] done in {time.time() - t0:.0f} s.') def seed_torch(seed=42): random.seed(seed) os.environ['PYTHONHASHSEED'] = str(seed) np.random.seed(s...
model = [0] * NUM_NETS for j in range(NUM_NETS): model[j] = tf.keras.models.Sequential() model[j].add(tf.keras.layers.Conv2D(32, kernel_size = 3, activation = 'relu', input_shape =(28, 28, 1))) model[j].add(tf.keras.layers.BatchNormalization()) model[j].add(tf.keras.layers.Conv2D(32, kernel_size = 3, activation = 're...
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test = pd.read_csv('.. /input/cassava-leaf-disease-classification/sample_submission.csv') test.head()<normalization>
lr_callback = tf.keras.callbacks.LearningRateScheduler(lambda x: 1e-3 * 0.95 ** x) history = [0] * NUM_NETS for j in range(NUM_NETS): X_train, X_val, y_train, y_val = train_test_split(train, labels, test_size = 0.1) STEPS_PER_EPOCH = X_train.shape[0] // 64 history[j] = model[j].fit_generator(datagen.flow(X_train, y_t...
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class TestDataset(Dataset): def __init__(self, df, transform=None): self.df = df self.file_names = df['image_id'].values self.transform = transform def __len__(self): return len(self.df) def __getitem__(self, idx): file_name = self.file_names[idx] file_path = f'{TEST_PATH}/{file_name}' image = cv2.imread(file_path) i...
preds = np.zeros(( test.shape[0],10)) for j in range(NUM_NETS): preds += model[j].predict(test)/ NUM_NETS probs = pd.DataFrame(preds) probs.to_csv('ensemble_probs') probs.columns = probs.columns.astype(str) print(probs.columns) probs.head()
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def _get_augmentations(aug_list, cfg): process = [] for aug in aug_list: if aug == 'Resize': process.append(Resize(cfg['size'], cfg['size'])) elif aug == 'RandomResizedCrop': process.append(RandomResizedCrop(cfg['size'], cfg['size'])) elif aug == 'CenterCrop': process.append(CenterCrop(CFG['size'], CFG['size'])) elif a...
submission = pd.read_csv('.. /input/digit-recognizer/sample_submission.csv') submission['Label'] = preds.argmax(axis = 1) submission.to_csv("ensemble.csv", index = False) submission.head(10 )
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def get_transforms(*, aug_list, cfg): return Compose( _get_augmentations(aug_list, cfg) )<choose_model_class>
prev_cnn_probs = pd.read_csv('.. /input/mnistsavedprobs/ensemble_probs') prev_cnn_probs = prev_cnn_probs.drop('Unnamed: 0', axis = 1) print(prev_cnn_probs.columns) prev_cnn_probs.head()
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class CustomModel(nn.Module): def __init__(self, model_name, target_size, pretrained=False): super().__init__() self.model = timm.create_model(model_name, pretrained=pretrained) if hasattr(self.model, 'classifier'): n_features = self.model.classifier.in_features self.model.classifier = nn.Linear(n_features, target_siz...
new_probs = probs.add(prev_cnn_probs ).divide(2) new_probs.head()
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<load_pretrained><EOS>
submission2 = pd.read_csv('.. /input/digit-recognizer/sample_submission.csv') submission2['Label'] = new_probs.values.argmax(axis = 1) submission2.to_csv("ensemble2.csv", index = False) submission2.head(10 )
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<SOS> metric: categorizationaccuracy Kaggle data source: digit-recognizer<save_to_csv>
%matplotlib inline
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predictions_list = [] model_dir_list = [] for config, model_dir in zip(normal_configs, normal_model_dirs): predictions_list.append(main(config, model_dir)) model_dir_list.append(model_dir) for config, model_dir in zip(tta_configs, tta_model_dirs): predictions_list.append(main_tta(config, model_dir)) model_dir_list.app...
print(tf.version.VERSION )
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predictions = np.zeros(predictions_list[0].shape, dtype=predictions_list[0].dtype) for i, key in zip(range(len(predictions_list)) , model_dir_list): predictions += predictions_list[i] * weights_dict[key] test['label'] = predictions.argmax(1) test[['image_id', 'label']].to_csv(OUTPUT_DIR+'submission.csv', index=False)...
train = pd.read_csv("/kaggle/input/digit-recognizer/train.csv") test = pd.read_csv("/kaggle/input/digit-recognizer/test.csv" )
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!mkdir -p /tmp/pip/cache/ !cp.. /input/omegaconf/PyYAML-5.4b2-cp38-cp38-manylinux1_x86_64.whl /tmp/pip/cache/ !cp.. /input/omegaconf/omegaconf-2.0.5-py3-none-any.whl /tmp/pip/cache/ !cp.. /input/omegaconf/typing_extensions-3.7.4.3-py3-none-any.whl /tmp/pip/cache/ !pip install --no-index --find-links /tmp/pip/cache/ ome...
train_X = train.loc[:, "pixel0":"pixel783"] train_y = train.loc[:, "label"]
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sys.path.append('.. /input/timm-pytorch-image-models/pytorch-image-models-master') sys.path.append(".. /input/cleanlab/") warnings.filterwarnings('ignore') <set_options>
treshhold=0.1 train_X[train_X<treshhold]=0 test[test<treshhold]=0
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mean, std =(0.485, 0.456, 0.406),(0.229, 0.224, 0.225) def get_transforms(img_size=(512, 512)) : transformations = Compose([ PadIfNeeded(min_height=img_size[0], min_width=img_size[1]), CenterCrop(img_size[0], img_size[1]), Normalize(mean=mean, std=std, max_pixel_value=255.0, p=1.0), ToTensorV2(p=1.0), ], p=1.0) retur...
train_X = train_X / 255.0 test_X = test / 255.0 train_X = train_X.values.reshape(-1,28,28,1) test_X = test_X.values.reshape(-1,28,28,1) train_y = to_categorical(train_y, num_classes = 10 )
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def create_model(model_name: str, pretrained: bool, num_classes: int, in_chans: int): model = timm.create_model(model_name=model_name, pretrained=pretrained, num_classes=num_classes, in_chans=in_chans) return model<load_pretrained>
def build_model(input_shape=(28, 28, 1)) : model = Sequential() model.add(Conv2D(32, kernel_size = 3, activation='swish', input_shape =(28, 28, 1))) model.add(BatchNormalization()) model.add(Conv2D(32, kernel_size = 3, activation='swish')) model.add(BatchNormalization()) model.add(Conv2D(32, kernel_size = 5, strides...
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def get_state_dict_from_checkpoint(log_dir, fold_num): ckpt_path = glob(os.path.join(log_dir, f'checkpoints/*fold{fold_num}*.ckpt')) [0] state_dict = pl_load(ckpt_path, map_location='cpu') if 'state_dict' in state_dict: state_dict = state_dict['state_dict'] did_distillation = False state_dict = OrderedDict(( k.replace...
datagen = ImageDataGenerator( featurewise_center=False, samplewise_center=False, featurewise_std_normalization=False, samplewise_std_normalization=False, zca_whitening=False, rotation_range=10, zoom_range = 0.1, width_shift_range=0.1, height_shift_range=0.1, horizontal_flip=False, vertical_flip=False )
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class LitTester(pl.LightningModule): def __init__(self, network_cfg, state_dict): super(LitTester, self ).__init__() self.model = create_model(**network_cfg) self.model.load_state_dict(state_dict) self.model.eval() def forward(self, x): x = self.model(x) return x def test_step(self, batch, batch_idx): score = torch....
learning_rate_reduction = ReduceLROnPlateau(monitor='accuracy', patience=3, verbose=1, factor=0.8, min_lr=0.001) annealer = LearningRateScheduler(lambda x: 1e-3 * 0.95 ** x) early_stop=EarlyStopping(monitor='val_loss', min_delta=0, patience=10, verbose=1, mode='auto', baseline=None, restore_best_weights=True )
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eff_b0_cfg_s = eff_b0_cfg = OmegaConf.create(eff_b0_cfg_s )<define_variables>
%%time nets=10 model = [0] *nets history = [0] * nets skf = StratifiedKFold(n_splits=nets, shuffle = True, random_state=1) skf.get_n_splits(train_X, train['label']) print(skf) number=0 for train_index, test_index in skf.split(train_X, train['label']): print("SPLIT ",number," TRAIN index:", train_index, "TEST index:"...
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name = '14-10-36' cfg = eff_b0_cfg do_predict = True do_submit = False img_dir = '.. /input/cassava-leaf-disease-merged/train/' label_path = '.. /input/cassava-leaf-disease-merged/merged.csv' log_dir = os.path.join('.. /input/cassava-public-ckpt', name) n_folds = len(glob(os.path.join(log_dir, 'checkpoints/*.ckpt'))) ...
for number in range(0,nets): model[number].save("StratifiedKFold_10_batch100_double_val_loss_"+str(number)+".h5" )
Digit Recognizer