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class Regressor(pl.LightningModule): def __init__(self, input_size, output_size, params, model_path='models/'): super(Regressor, self ).__init__() dim_1 = params['dim_1'] dim_2 = params['dim_2'] dim_3 = params['dim_3'] dim_4 = params['dim_4'] self.dropout_prob = params['dropout'] self.lr = params['lr'] self.activation ...
mnist_train.isna().any().any()
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def final_train(p, load=False): data_ = load_data(root_dir='./data/', mode='train',overide='/kaggle/input/jane-street-market-prediction/train.csv') data, target, features, date = preprocess_data(data_, nn=True) dataset = FinData(data=data, target=target, date=date) input_size = data.shape[-1] output_size = 1 train_i...
mnist_train_data = mnist_train.loc[:, "pixel0":] mnist_train_label = mnist_train.loc[:, "label"] mnist_train_data = mnist_train_data/255.0 mnist_test = mnist_test/255.0
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def fillna_npwhere(array, values): if np.isnan(array.sum()): array = np.nan_to_num(array)+ np.isnan(array)* values return array def test_model(models, features, cache_dir='cache'): env = janestreet.make_env() iter_test = env.iter_test() if type(models)== list: models = [model.eval() for model in models] else: models.ev...
standardized_scalar = StandardScaler() standardized_data = standardized_scalar.fit_transform(mnist_train_data) standardized_data.shape
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def main(train=True): p = {'dim_1': 167, 'dim_2': 454, 'dim_3': 371, 'dim_4': 369, 'dim_5': 155, 'activation': nn.LeakyReLU, 'dropout': 0.21062362698532755, 'lr': 0.0022252024054478523, 'label_smoothing': 0.05564974140461841, 'weight_decay': 0.04106097088288333, 'amsgrad': True, 'batch_size': 10072} if train: models,...
cov_matrix = np.matmul(standardized_data.T, standardized_data) cov_matrix.shape
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pca_components = 60<choose_model_class>
lambdas, vectors = eigh(cov_matrix, eigvals=(782, 783)) vectors.shape
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e_size = 64 fc_input = pca_components h_dims = [512,512,256,128] dropout_rate = 0.5 epochs = 200 minibatch_size = 100000 class MarketPredictor(nn.Module): def __init__(self): super(MarketPredictor, self ).__init__() self.e = nn.Embedding(2,e_size) self.deep = nn.Sequential( nn.Linear(fc_input,h_dims[0]), nn.BatchNorm...
new_coordinates = np.matmul(vectors, standardized_data.T) print(new_coordinates.shape) new_coordinates = np.vstack(( new_coordinates, mnist_train_label)).T
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epochs = 200 path = '/kaggle/input/pytorch-nn-model-more-feature-engineering/marketpredictor_state_dict_'+str(epochs)+'epochs.pt' model = MarketPredictor() model.load_state_dict(torch.load(path,map_location=dev)) model.to(dev) model.eval()<load_pretrained>
df_new = pd.DataFrame(new_coordinates, columns=["f1", "f2", "labels"]) df_new.head()
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with open('/kaggle/input/pytorch-nn-model-more-feature-engineering/feature_processing.pkl', 'rb')as f: sc, pca, maxindex, fill_val, remove_names= pickle.load(f )<define_variables>
pca = decomposition.PCA() pca.n_components = 2 pca_data = pca.fit_transform(standardized_data) pca_data.shape
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feature_names = ['feature_'+str(i)for i in range(1,130)] exclude = np.where([maxindex[i,1] > 100 and maxindex [i,2] > 1 for i in range(129)])[0] keep = np.where([(feature_names[i] != remove_names ).all() for i in range(129)])[0]<split>
pca_data = np.vstack(( pca_data.T, mnist_train_label)).T
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env = janestreet.make_env() iter_test = env.iter_test()<data_type_conversions>
df_PCA = pd.DataFrame(new_coordinates, columns=["f1", "f2", "labels"]) df_PCA.head()
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for(test_df, sample_prediction_df)in iter_test: if test_df['weight'].item() == 0: sample_prediction_df.action = 0 else: test_df_features = test_df[feature_names].to_numpy() for i in exclude: if test_df_features[0,i] == maxindex[i,0]: test_df_features[0,i] = fill_val[i] test_df_int_features = test_df['feature_0'].to_num...
mnist_train_data = np.array(mnist_train_data) mnist_train_label = np.array(mnist_train_label )
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e_size = 64 fc_input = 130 h_dims = [512,512,256,128] dropout_rate = 0.5 epochs = 2000 minibatch_size = 100000 class MarketPredictor(nn.Module): def __init__(self): super(MarketPredictor, self ).__init__() self.deep = nn.Sequential( nn.Linear(fc_input,h_dims[0]), nn.BatchNorm1d(h_dims[0]), nn.LeakyReLU() , nn.Dropout(...
from tensorflow.keras.models import Sequential from tensorflow.keras.layers import Dense, Dropout, Lambda, Flatten, BatchNormalization from tensorflow.keras.layers import Conv2D, MaxPool2D, AvgPool2D from tensorflow.keras.optimizers import Adadelta from keras.utils.np_utils import to_categorical from tensorflow.keras.p...
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path = '/kaggle/input/pytorch-nn-model-w-o-feature-reduction/marketpredictor_state_dict_'+str(epochs)+'epochs.pt' model = MarketPredictor() model.load_state_dict(torch.load(path,map_location=dev)) model.to(dev) model.eval()<load_pretrained>
nclasses = mnist_train_label.max() - mnist_train_label.min() + 1 mnist_train_label = to_categorical(mnist_train_label, num_classes = nclasses) print("Shape of ytrain after encoding: ", mnist_train_label.shape )
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with open('/kaggle/input/pytorch-nn-model-w-o-feature-reduction/feature_processing.pkl', 'rb')as f: sc, maxindex, fill_val = pickle.load(f )<define_variables>
def build_model(input_shape=(28, 28, 1)) : model = Sequential() model.add(Conv2D(32, kernel_size = 3, activation='relu', input_shape = input_shape)) model.add(BatchNormalization()) model.add(Conv2D(32, kernel_size = 3, activation='relu')) model.add(BatchNormalization()) model.add(Conv2D(32, kernel_size = 5, strides=2...
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feature_names = ['feature_'+str(i)for i in range(130)] exclude = np.where([maxindex[i,1] > 100 and maxindex [i,2] > 1 for i in range(129)])[0]<split>
cnn_model = build_model(( 28, 28, 1)) compile_model(cnn_model, 'adam', 'categorical_crossentropy') model_history = train_model(cnn_model, mnist_train_data, mnist_train_label, 80, 0.2 )
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env = janestreet.make_env() iter_test = env.iter_test()<data_type_conversions>
predictions = cnn_model.predict(mnist_test_arr )
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for(test_df, sample_prediction_df)in iter_test: if test_df['weight'].item() == 0: sample_prediction_df.action = 0 else: test_df_features = test_df[feature_names].to_numpy() for i in exclude: if test_df_features[0,i+1] == maxindex[i,0]: test_df_features[0,i+1] = fill_val[i] nans = np.isnan(test_df_features) for i in ra...
predictions_test = [] for i in predictions: predictions_test.append(np.argmax(i))
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from tensorflow.keras.layers import Input, Dense, BatchNormalization, Dropout, Concatenate, Lambda, GaussianNoise, Activation from tensorflow.keras.models import Model, Sequential from tensorflow.keras.losses import BinaryCrossentropy from tensorflow.keras.optimizers import Adam from tensorflow.keras.callbacks import E...
submission = pd.DataFrame({ "ImageId": mnist_test.index+1, "Label": predictions_test }) submission.to_csv('my_submission.csv', index=False )
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def create_mlp( num_columns, num_labels, hidden_units, dropout_rates, label_smoothing, learning_rate ): inp = tf.keras.layers.Input(shape=(num_columns,)) x = tf.keras.layers.BatchNormalization()(inp) x = tf.keras.layers.Dropout(dropout_rates[0] )(x) for i in range(len(hidden_units)) : x = tf.keras.layers.Dense(hidd...
train_df = pd.read_csv("/kaggle/input/digit-recognizer/train.csv") test_df = pd.read_csv("/kaggle/input/digit-recognizer/test.csv") submission_df = pd.read_csv("/kaggle/input/digit-recognizer/sample_submission.csv" )
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data = dd.read_parquet('.. /input/janestreetparquetdata/date*.parquet') features = ['feature_{}'.format(i)for i in range(130)] resp_cols = ['resp_1', 'resp_2', 'resp_3', 'resp', 'resp_4'] train = data.compute() train = train.query('date > 85' ).reset_index(drop = True) train = train[train['weight'] != 0] f_mean = tra...
X_train = train_df.iloc[:, 1:].values y_train = train_df.iloc[:, 0].values X_test = test_df.values print(f"X_train shape: {X_train.shape}") print(f"y_train shape: {y_train.shape}") print(f"X_test shape: {X_test.shape}" )
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SEED = 1111 tf.random.set_seed(SEED) np.random.seed(SEED) hidden_units = [150, 150, 150] dropout_rates = [0.2, 0.2, 0.2, 0.2] label_smoothing = 1e-2 learning_rate = 1e-3 epochs = 250 batch_size = 5000 save_every_n_epochs = 10 save_freq =(len(X_train)//batch_size)*save_every_n_epochs clf = create_mlp( len(features), ...
X_train_combined = np.r_[X_train, X_train_add] y_train_combined = np.r_[y_train, y_train_add] del X_train del X_train_add del y_train del y_train_add print(f"X_train_combined shape: {X_train_combined.shape}") print(f"y_train_combined shape: {y_train_combined.shape}" )
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class TrainData(Dataset): def __init__(self,file_name,root_dir,predict=False): self.file_name = file_name self.root_dir = root_dir self.feature = ['feature_{}'.format(i)for i in range(130)] self.resp = ['resp_{}'.format(i)for i in range(1,5)]+['resp'] self.prediction = predict def __len__(self): return len(glob(os.path...
class ImageReshaper(BaseEstimator, TransformerMixin): def __init__(self, shape): self.shape = shape def fit(self, X, y=None): return self def transform(self, X, y=None): return X.reshape(self.shape )
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dataset = TrainData('date','.. /input/janestreetparquetdata/',predict = True) weight_path = glob('./*.ckpt.index') weight_path = [os.path.basename(each ).split('.')[0] for each in weight_path] weight_path.sort() for path in weight_path: clf.load_weights('./{}.ckpt'.format(path)) p = [] for i in range(len(dataset)) : ...
def build_lenet5_model() : model = Sequential() model.add(Conv2D(6, kernel_size=5, activation='relu', input_shape=(28,28,1))) model.add(MaxPooling2D()) model.add(Conv2D(16, kernel_size=5, activation='relu')) model.add(MaxPooling2D()) model.add(Flatten()) model.add(Dense(400, activation='relu')) model.add(Dense(12...
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selection = 'cp-0200' clf.load_weights('./{}.ckpt'.format(selection))<predict_on_test>
def build_custom_lenet5_model() : model = Sequential() model.add(Conv2D(32,kernel_size=3,activation='relu',input_shape=(28,28,1))) model.add(BatchNormalization()) model.add(Conv2D(32,kernel_size=3,activation='relu')) model.add(BatchNormalization()) model.add(Conv2D(32,kernel_size=5,strides=2,padding='same',activat...
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env = janestreet.make_env() th = 0.5 for(test_df, pred_df)in tqdm(env.iter_test()): if test_df['weight'].item() > 0: x_tt = test_df.loc[:, features].values x_tt = np.nan_to_num(x_tt)+f_mean*(np.isnan(x_tt ).astype(int)) pred = np.median(clf(x_tt, training=False)) pred_df.action = np.where(pred >= th, 1, 0 ).astype(int)...
stratified_fold = StratifiedKFold(n_splits=5, shuffle=True, random_state=42) for fold, indices in enumerate(stratified_fold.split(X_train_combined, y_train_combined)) : X_train_, y_train_ = X_train_combined[indices[0]], y_train_combined[indices[0]] X_test_, y_test_ = X_train_combined[indices[1]], y_train_combined[indi...
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SEED = 1111 inference = False cv = False tf.random.set_seed(SEED) np.random.seed(SEED) train_pickle_file = '/kaggle/input/pickling/train.csv.pandas.pickle' train = pickle.load(open(train_pickle_file, 'rb')) train = train.query('date > 85' ).reset_index(drop = True) train = train[train['weight'] != 0] train.fillna(tr...
lenet5_model = Pipeline([ ('min_max_scaler', MinMaxScaler()), ('image_reshaper', ImageReshaper(shape=(-1, 28, 28, 1))), ('model', KerasClassifier(build_lenet5_model, epochs=5, batch_size=32)) ]) custom_lenet5_model = Pipeline([ ('min_max_scaler', MinMaxScaler()), ('image_reshaper', ImageReshaper(shape=(-1, 28, 28...
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def build_neutralizer(train, features, proportion, return_neut=False): neutralizer = {} neutralized_features = np.zeros(( train.shape[0], len(features))) target = train[['resp', 'bias']].values for i, f in enumerate(features): feature = train[f].values.reshape(-1, 1) coeffs = np.linalg.lstsq(target, feature)[0] neu...
predictions = lenet5_model_predictions + custom_lenet5_model_predictions predictions = np.argmax(predictions, axis=1 )
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<prepare_x_and_y><EOS>
submission_df["Label"] = predictions submission_df.to_csv('submissions.csv', index=False) FileLink('submissions.csv' )
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<SOS> metric: categorizationaccuracy Kaggle data source: digit-recognizer<choose_model_class>
%matplotlib inline
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def create_mlp( num_columns, num_labels, hidden_units, dropout_rates, label_smoothing, learning_rate ): inp = tf.keras.layers.Input(shape=(num_columns,)) x = tf.keras.layers.BatchNormalization()(inp) x = tf.keras.layers.Dropout(dropout_rates[0] )(x) for i in range(len(hidden_units)) : x = tf.keras.layers.Dense(hidd...
IMG_ROWS = 28 IMG_COLS = 28 NUM_CLASSES = 10 TEST_SIZE = 0.1 RANDOM_STATE = 2018 NO_EPOCHS = 150 PATIENCE = 20 VERBOSE = 1 BATCH_SIZE = 128 IS_LOCAL = False if(IS_LOCAL): PATH=".. /input/digit-recognizer/" else: PATH=".. /input/" print(os.listdir(PATH))
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if cv: oof_probas = np.zeros(y.shape) val_idx_all = [] N_SPLITS = 5 gkf = GroupKFold(n_splits=N_SPLITS) for fold,(train_idx, val_idx)in enumerate(gkf.split(train.action.values, groups=train.date.values)) : X_train, X_val = X.iloc[train_idx], X.iloc[val_idx].values y_train, y_val = y[train_idx], y[val_idx] clf.fit(X_t...
train_file = PATH+"train.csv" test_file = PATH+"test.csv" train_df = pd.read_csv(train_file) test_df = pd.read_csv(test_file )
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if cv: auc_oof = roc_auc_score(y[val_idx], oof_probas[val_idx]) print(auc_oof )<compute_test_metric>
print("MNIST train - rows:",train_df.shape[0]," columns:", train_df.shape[1]) print("MNIST test - rows:",test_df.shape[0]," columns:", test_df.shape[1] )
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def determine_action(df, thresh): action =(df.weight * df.resp > thresh ).astype(int) return action def date_weighted_resp(df): cols = ['weight', 'resp', 'action'] weighted_resp = np.prod(df[cols], axis=1) return weighted_resp.sum() def calculate_t(dates_p): e_1 = dates_p.sum() / np.sqrt(( dates_p**2 ).sum()) ...
def get_classes_distribution(data): label_counts = data["label"].value_counts() total_samples = len(data) for i in range(len(label_counts)) : label = label_counts.index[i] count = label_counts.values[i] percent =(count / total_samples)* 100 print("{}: {} or {}%".format(label, count, percent)) get_classes_distribution(...
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env = janestreet.make_env() for(test_df, pred_df)in tqdm(env.iter_test()): if test_df['weight'].item() > 0: x_tt = test_df.loc[:, features].values if np.isnan(x_tt[:, 1:].sum()): x_tt[:, 1:] = np.nan_to_num(x_tt[:, 1:])+ np.isnan(x_tt[:, 1:])* f_mean x_tt = np.append(x_tt, [[1]], axis=1) x_tt = neutralize_array(x_tt, ...
def sample_images_data(data, hasLabel=True): sample_images = [] sample_labels = [] if(hasLabel): for k in range(0,10): samples = data[data["label"] == k].head(4) for j, s in enumerate(samples.values): img = np.array(samples.iloc[j, 1:] ).reshape(IMG_ROWS,IMG_COLS) sample_images.append(img) sample_labels.append(sampl...
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def install(package): subprocess.check_call([sys.executable, "-m", "pip","install",package]) install(".. /input/fastremap/fastremap-1.10.2-cp37-cp37m-manylinux1_x86_64.whl") install(".. /input/fillvoids/fill_voids-2.0.0-cp37-cp37m-manylinux1_x86_64.whl") install(".. /input/finalmask") install("pydicom" )<set_option...
def data_preprocessing(raw, hasLabel=True): start_pixel = 0 if(hasLabel): start_pixel = 1 if(hasLabel): out_y = keras.utils.to_categorical(raw.label, NUM_CLASSES) else: out_y = None num_images = raw.shape[0] x_as_array = raw.values[:,start_pixel:] x_shaped_array = x_as_array.reshape(num_images, IMG_ROWS, IMG_COLS, 1) ...
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sns.set(style="whitegrid") sns.set_context("paper") <define_variables>
X, y = data_preprocessing(train_df) X_test, y_test = data_preprocessing(test_df,hasLabel=False )
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def seed_everything(seed=2020): random.seed(seed) os.environ['PYTHONHASHSEED'] = str(seed) np.random.seed(seed) tf.random.set_seed(seed) seed_everything(42 )<load_from_csv>
X_train, X_val, y_train, y_val = train_test_split(X, y, test_size=TEST_SIZE, random_state=RANDOM_STATE )
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ROOT = ".. /input/osic-pulmonary-fibrosis-progression" train=pd.read_csv(f"{ROOT}/train.csv") train.head()<load_from_csv>
print("MNIST train - rows:",X_train.shape[0]," columns:", X_train.shape[1:4]) print("MNIST valid - rows:",X_val.shape[0]," columns:", X_val.shape[1:4]) print("MNIST test - rows:",X_test.shape[0]," columns:", X_test.shape[1:4] )
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sample_submission=pd.read_csv(f"{ROOT}/sample_submission.csv") test=pd.read_csv(f"{ROOT}/test.csv") test.head()<merge>
model = Sequential() model.add(Conv2D(32, kernel_size=(3, 3),activation='relu', padding="same", kernel_initializer='he_normal',input_shape=(IMG_ROWS, IMG_COLS, 1))) model.add(BatchNormalization()) model.add(Conv2D(32,kernel_size=(3, 3), activation='relu')) model.add(BatchNormalization()) model.add(Conv2D(32,kernel_s...
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train['Patient_Week']=train['Patient']+'_'+train['Weeks'].astype(str) lists=train['Patient_Week'][train.duplicated(['Patient_Week'], keep=False)].unique().tolist() for patient_week in lists: new_row=train.loc[train['Patient_Week']==patient_week].groupby(['Patient','Weeks','Age','Sex','SmokingStatus','Patient_Week'] )....
model.compile(loss = "categorical_crossentropy", optimizer="adam", metrics=["accuracy"] )
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test.rename(columns={'Weeks': 'base_Week', 'FVC': 'base_FVC', 'Percent': 'base_Percent', 'Age': 'base_Age'},inplace=True) Week=sample_submission['Patient_Week'].apply(lambda x : x.split('_')[1] ).unique() Week=np.tile(Week, len(test['Patient'])) test=test.loc[test.index.repeat(146)].reset_index(drop=True) test['predi...
plot_model(model, to_file='model.png') SVG(model_to_dot(model ).create(prog='dot', format='svg'))
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file_path= '.. /input/osic-pulmonary-fibrosis-progression/train/ID00007637202177411956430/10.dcm' dataset = pydicom.dcmread(file_path) <compute_test_metric>
NO_EPOCHS = 10
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def score(y_true, y_pred): tf.dtypes.cast(y_true, tf.float32) tf.dtypes.cast(y_pred, tf.float32) sigma = abs(y_pred[:,2] - y_pred[:,0]) fvc_pred = y_pred[:,1] sigma_clip = tf.maximum(sigma, 70) delta = tf.abs(y_true[:, 0] - fvc_pred) delta = tf.minimum(delta, 1000) sq2 = tf.sqrt(tf.dtypes.cast(2, dtype=tf.float32...
earlystopper = EarlyStopping(monitor='loss', patience=PATIENCE, verbose=VERBOSE) checkpointer = ModelCheckpoint('best_model.h5', monitor='val_acc', verbose=VERBOSE, save_best_only=True, save_weights_only=True) history = model.fit(X_train, y_train, batch_size=BATCH_SIZE, epochs=NO_EPOCHS, verbose=1, validation_data=(X...
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input_image = sitk.ReadImage('.. /input/osic-pulmonary-fibrosis-progression/train/ID00007637202177411956430/12.dcm') segmentation = mask.apply(input_image) plt.figure(figsize=(10,10)) plt.imshow(segmentation[0] )<load_from_csv>
print("run model - predict validation set") score = model.evaluate(X_val, y_val, verbose=0) print(f'Last validation loss: {score[0]}, accuracy: {score[1]}') model_optimal = model model_optimal.load_weights('best_model.h5') score = model_optimal.evaluate(X_val, y_val, verbose=0) print(f'Best validation loss: {score...
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atten=pd.read_csv('.. /input/attent-1/atten(1 ).csv') patients=os.listdir(f"{ROOT}/{how}") avg_atten_test=[] for patient in patients: try: mid=mid_image_test(patient,True,True) postives=mid>mid.min() mid[postives].mean() avg_atten_test.append(mid[postives].mean()) except: avg_atten_test.append(np.nan) continue<pre...
def predict_show_classes(model, X_val, y_val): predicted_classes = model.predict_classes(X_val) y_true = np.argmax(y_val,axis=1) correct = np.nonzero(predicted_classes==y_true)[0] incorrect = np.nonzero(predicted_classes!=y_true)[0] print("Correct predicted classes:",correct.shape[0]) print("Incorrect predicted clas...
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final1=final.copy() final1=final1.merge(atten,on='Patient') X1=final1[['base_fvc','base_percent','Age','sex','smokingstatus','weeks_passed','avg_atten','base_week']].copy() y1=final1.FVC.copy()<categorify>
correct, incorrect = predict_show_classes(model, X_val, y_val )
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enc = OneHotEncoder(handle_unknown='ignore') enc.fit(X1[['sex','smokingstatus']]) encoded=pd.DataFrame(enc.transform(X1[['sex','smokingstatus']] ).toarray()) X1=X1.join(encoded) X1.drop(['smokingstatus','sex'],axis=1,inplace=True) scaler=preprocessing.MinMaxScaler().fit(X1) X1=pd.DataFrame(scaler.transform(X1)) X...
correct, incorrect = predict_show_classes(model_optimal, X_val, y_val )
Digit Recognizer
1,425,655
atten_test=pd.DataFrame({'Patient':patients,'avg_atten':avg_atten_test}) atten_test['avg_atten']=atten_test['avg_atten'].fillna(atten["avg_atten"].mean()) X_test=test.merge(atten_test,on='Patient') X_test=X_test[['base_fvc','base_percent','Age','sex','smokingstatus','weeks_passed','avg_atten','base_week']].copy() en...
y_cat = model.predict(X_test, batch_size=64 )
Digit Recognizer
1,425,655
inputs= keras.Input(shape=[11]) dense = layers.Dense(100, activation="relu") x = dense(inputs) x = layers.Dense(100, activation="relu" )(x) output1 = layers.Dense(3,activation='linear' )(x) model = keras.Model(inputs=inputs, outputs=output1) model.summary()<train_model>
y_pred = np.argmax(y_cat,axis=1 )
Digit Recognizer
1,425,655
model.compile(loss=mloss(0.8),optimizer='adam',metrics=score) model.fit(X1, y1,batch_size=512,epochs=130 )<predict_on_test>
output_file = "submission.csv" with open(output_file, 'w')as f : f.write('ImageId,Label ') for i in range(len(y_pred)) : f.write("".join([str(i+1),',',str(y_pred[i]),' ']))
Digit Recognizer
1,425,655
preds_high=model.predict(X_test)[:,0] preds_low=model.predict(X_test)[:,2] preds=model.predict(X_test)[:,1]<prepare_output>
y_cat = model_optimal.predict(X_test, batch_size=64) y_pred = np.argmax(y_cat,axis=1) output_file = "submission_optimal.csv" with open(output_file, 'w')as f : f.write('ImageId,Label ') for i in range(len(y_pred)) : f.write("".join([str(i+1),',',str(y_pred[i]),' ']))
Digit Recognizer
2,712,650
preds_set=pd.DataFrame({'preds_high':preds_high}) preds_set['preds']=preds preds_set['preds_low']=preds_low preds_set['sigma_pred']=abs(preds_set['preds_high']-preds_set['preds_low']) preds_set.reset_index(inplace=True,drop=True) preds_set<save_to_csv>
print(K.image_data_format() )
Digit Recognizer
2,712,650
submission=pd.DataFrame({'Patient_Week':test['Patient_Week'],'FVC': preds_set['preds'],'Confidence':preds_set['sigma_pred']}) submission['FVC']=submission['FVC'].apply(lambda x: round(x, 4)) /1 submission['Confidence']=submission['Confidence'].apply(lambda x: round(x, 4)) submission.to_csv('submission.csv',index=False...
( x_train, y_train),(x_test, y_test)= mnist.load_data()
Digit Recognizer
2,712,650
train_arc = zipfile.ZipFile('/kaggle/input/whats-cooking/train.json.zip','r') train_data = pd.read_json(train_arc.read('train.json')) train_data.head()<load_pretrained>
y_train = to_categorical(y_train, num_classes = 10) y_test = to_categorical(y_test, num_classes=10 )
Digit Recognizer
2,712,650
test_arc = zipfile.ZipFile('/kaggle/input/whats-cooking/test.json.zip','r') test_data = pd.read_json(test_arc.read('test.json')) test_data.head()<count_values>
x_train.astype('float32') x_test.astype('float32' )
Digit Recognizer
2,712,650
train_data['cuisine'].value_counts()<feature_engineering>
x_train = x_train/255 x_test = x_test/255
Digit Recognizer
2,712,650
train_ingredients_count = {} for i in range(len(train_data)) : for j in train_data['ingredients'][i]: if j in train_ingredients_count.keys() : train_ingredients_count[j]+=1 else: train_ingredients_count[j] = 1<count_values>
input_shape =(28,28,1) model = Sequential() model.add(Conv2D(96,(3, 3), padding='Same', activation='relu', input_shape=input_shape)) model.add(BatchNormalization()) model.add(Conv2D(96,(3, 3), padding='Same', activation='relu')) model.add(BatchNormalization()) model.add(MaxPooling2D(pool_size=(2, 2))) model.add(Con...
Digit Recognizer
2,712,650
train_ingredients_count['romaine lettuce']<feature_engineering>
call_back = keras.callbacks.EarlyStopping(monitor='val_acc', min_delta=0, patience=5, verbose=0, restore_best_weights=True) reduce_lr = keras.callbacks.ReduceLROnPlateau(monitor='val_acc', factor=0.25, verbose=1, patience=2, min_lr=0.000001 )
Digit Recognizer
2,712,650
test_ingredients_count = {} for i in range(len(test_data)) : for j in test_data['ingredients'][i]: if j in test_ingredients_count.keys() : test_ingredients_count[j]+=1 else: test_ingredients_count[j] = 1<define_variables>
model.compile(loss='categorical_crossentropy', optimizer=keras.optimizers.Adam(lr=0.001), metrics=['accuracy']) train_datagen = ImageDataGenerator(shear_range=0.2, zoom_range=0.2, featurewise_center=False, samplewise_center=False, featurewise_std_normalization=False, samplewise_std_normalization=False, zca_whitening=F...
Digit Recognizer
2,712,650
train_ingred_miss = [] for i in test_ingredients_count.keys() : if i not in train_ingredients_count.keys() : train_ingred_miss.append(i )<feature_engineering>
xtest = pd.read_csv(".. /input/test.csv" )
Digit Recognizer
2,712,650
<define_variables><EOS>
submission = model.predict(xtest) submission = np.argmax(submission, axis = 1) submission = pd.Series(submission,name="Label") submission = pd.concat([pd.Series(range(1,28001),name = "ImageId"),submission],axis = 1) submission.to_csv("submission.csv",index=False )
Digit Recognizer
2,188,530
<SOS> metric: categorizationaccuracy Kaggle data source: digit-recognizer<feature_engineering>
tf.set_random_seed(42 )
Digit Recognizer
2,188,530
for i in test_ingred_miss: test_ingredients_count[i] = 0 len(test_ingredients_count )<feature_engineering>
train_path = os.path.join('.. ', 'input', 'train.csv') test_path = os.path.join('.. ', 'input', 'test.csv') size = 28 lr = 0.001 num_classes = 10 epochs = 30 batch_size = 128
Digit Recognizer
2,188,530
for i in train_ingredients_count.keys() : train_data[i] = np.zeros(len(train_data))<feature_engineering>
raw_train_df = pd.read_csv(train_path) raw_test_df = pd.read_csv(test_path )
Digit Recognizer
2,188,530
for i in test_ingredients_count.keys() : test_data[i] = np.zeros(len(test_data))<feature_engineering>
def parse_train_df(_train_df): labels = _train_df.iloc[:,0].values imgs = _train_df.iloc[:,1:].values imgs_2d = np.array([[[[float(imgs[index][i*28 + j])/ 255] for j in range(28)] for i in range(28)] for index in range(len(imgs)) ]) processed_labels = [[0 for _ in range(10)] for i in range(len(labels)) ] for i in rang...
Digit Recognizer
2,188,530
for i in range(len(train_data)) : for j in train_data['ingredients'][i]: train_data[j].iloc[i] = 1<feature_engineering>
y_train_set, x_train_set = parse_train_df(raw_train_df) x_test = parse_test_df(raw_test_df) x_train, x_val, y_train, y_val = train_test_split(x_train_set, y_train_set, test_size=0.20, random_state=42 )
Digit Recognizer
2,188,530
for i in range(len(test_data)) : for j in test_data['ingredients'][i]: test_data[j].iloc[i] = 1<drop_column>
print("Number of 1: {}".format(len(raw_train_df[raw_train_df['label'] == 1]))) print("Number of 5: {}".format(len(raw_train_df[raw_train_df['label'] == 5])) )
Digit Recognizer
2,188,530
test_data=test_data[train_data.drop('cuisine',axis=1 ).columns]<import_modules>
model = keras.Sequential() model.add(Conv2D(32, kernel_size=(3, 3), strides=(1, 1), activation='relu', input_shape=(size, size, 1))) model.add(Conv2D(32,(3, 3), activation='relu', strides=(2, 2))) model.add(BatchNormalization()) model.add(Dropout(0.3)) model.add(Conv2D(64,(3, 3), activation='relu')) model.add(Conv2D...
Digit Recognizer
2,188,530
from sklearn.linear_model import LogisticRegression from sklearn import preprocessing<prepare_x_and_y>
training_history = model.fit( x_train, y_train, epochs=epochs, verbose=1, validation_data=(x_val, y_val), callbacks=callback_list )
Digit Recognizer
2,188,530
X = train_data.drop(['id','cuisine','ingredients'],axis =1) Y = train_data['cuisine']<split>
image_generator = ImageDataGenerator( rotation_range=15, width_shift_range=0.1, height_shift_range=0.1, zoom_range=0.1 ) image_generator.fit(x_train )
Digit Recognizer
2,188,530
X_train,X_val,y_train,y_val = train_test_split(X,Y,random_state =42 )<train_model>
model_augmented = keras.Sequential() model_augmented.add(Conv2D(32, kernel_size=(3, 3), strides=(1, 1), activation='relu', input_shape=(size, size, 1))) model_augmented.add(Conv2D(32,(3, 3), activation='relu', strides=(2, 2))) model_augmented.add(BatchNormalization()) model_augmented.add(Dropout(0.3)) model_augmente...
Digit Recognizer
2,188,530
lr = LogisticRegression(solver='liblinear') lr.fit(X_train,y_train )<compute_test_metric>
pred = model.predict(x_test) pred_aug = model_augmented.predict(x_test )
Digit Recognizer
2,188,530
<predict_on_test><EOS>
def convert_prediction_result(model_result): result = [] for i in range(len(model_result)) : result += [np.argmax(model_result[i])] return result def write_submission(_submission_path, result_arr): f_out = open(_submission_path, 'w') f_out.write("ImageId,Label ") for i in range(len(result_arr)) : f_out.write("{},{} "...
Digit Recognizer
5,811,807
<SOS> metric: categorizationaccuracy Kaggle data source: digit-recognizer<prepare_output>
np.random.seed(92)
Digit Recognizer
5,811,807
Submission=test_data[['id','cuisine']] Submission.set_index('id',inplace=True )<save_to_csv>
train_data = '/kaggle/input/digit-recognizer/train.csv' test_data = '/kaggle/input/digit-recognizer/test.csv'
Digit Recognizer
5,811,807
Submission.to_csv('Submission.csv' )<load_pretrained>
train_df = pd.read_csv(train_data) print(train_df.shape) train_df.head()
Digit Recognizer
5,811,807
archive_train=zipfile.ZipFile('/kaggle/input/whats-cooking/train.json.zip','r') train_data=pd.read_json(archive_train.read('train.json')) train_data.head()<load_pretrained>
test_df = pd.read_csv(test_data) print(test_df.shape) test_df.head()
Digit Recognizer
5,811,807
archive_test=zipfile.ZipFile('/kaggle/input/whats-cooking/test.json.zip','r') test_data=pd.read_json(archive_test.read('test.json')) test_data.head()<count_values>
if 'label' in train_df.columns: y_train = train_df['label'].values.astype('int32') train_df = train_df.drop('label', axis = 1) else: pass x_train = train_df.values.astype('float32') x_test = test_df.values.astype('float32' )
Digit Recognizer
5,811,807
train_data['cuisine'].value_counts()<count_missing_values>
train_max = np.max(x_train) train_min = np.min(x_train) test_max = np.max(x_test) test_min = np.min(x_test)
Digit Recognizer
5,811,807
train_data.isna().sum()<count_missing_values>
x_train = x_train/255.0 x_test = x_test/255.0
Digit Recognizer
5,811,807
test_data.isna().sum()<define_variables>
norm_train_max = np.max(x_train) norm_train_min = np.min(x_train) norm_test_max = np.max(x_test) norm_test_min = np.min(x_test )
Digit Recognizer
5,811,807
train_ingredients_count={} for i in range(len(train_data)) : for j in train_data['ingredients'][i]: if j in train_ingredients_count.keys() : train_ingredients_count[j]+=1 else: train_ingredients_count[j]=1<define_variables>
y_train= to_categorical(y_train) num_classes = y_train.shape[1] num_classes
Digit Recognizer
5,811,807
test_ingredients_count={} for i in range(len(test_data)) : for j in test_data['ingredients'][i]: if j in test_ingredients_count.keys() : test_ingredients_count[j]+=1 else: test_ingredients_count[j]=1<define_variables>
model = tf.keras.models.Sequential([ tf.keras.layers.Conv2D(16,(5,5),activation='relu', input_shape=(28,28,1)) , tf.keras.layers.Conv2D(16,(5,5), activation= 'relu'), tf.keras.layers.Conv2D(16,(5,5), activation= 'relu'), tf.keras.layers.BatchNormalization() , tf.keras.layers.Dropout(0.25), tf.keras.layers.Conv2D(32,(3,...
Digit Recognizer
5,811,807
ingredients_missing_train=[] for i in test_ingredients_count.keys() : if i not in train_ingredients_count.keys() : ingredients_missing_train.append(i) print(len(ingredients_missing_train))<define_variables>
Digit Recognizer
5,811,807
for i in ingredients_missing_train: train_ingredients_count[i]=0 print(len(train_ingredients_count))<define_variables>
Digit Recognizer
5,811,807
ingredients_missing=[] for i in train_ingredients_count.keys() : if i not in test_ingredients_count.keys() : ingredients_missing.append(i) print(len(ingredients_missing))<define_variables>
Digit Recognizer
5,811,807
for i in ingredients_missing: test_ingredients_count[i]=0 print(len(test_ingredients_count))<feature_engineering>
model.compile(loss = 'categorical_crossentropy', optimizer= RMSprop(lr=0.003), metrics = ['acc'] )
Digit Recognizer
5,811,807
for i in train_ingredients_count.keys() : train_data[i]=np.zeros(len(train_data)) for i in test_ingredients_count.keys() : test_data[i]=np.zeros(len(test_data))<filter>
train_generator = image.ImageDataGenerator()
Digit Recognizer
5,811,807
for i in range(len(train_data)) : for j in train_data['ingredients'][i]: train_data[j].iloc[i]=1<filter>
X = x_train Y = y_train X_train, X_val, Y_train , Y_val = train_test_split(x_train,y_train, test_size= 0.05, random_state = 92) print(X_train.shape) batches = train_generator.flow(X_train, Y_train, batch_size=32) val_batches = train_generator.flow(X_val, Y_val, batch_size=32 )
Digit Recognizer
5,811,807
for i in range(len(test_data)) : for j in test_data['ingredients'][i]: test_data[j].iloc[i]=1<drop_column>
history = model.fit_generator( generator=batches, steps_per_epoch=batches.n, epochs=20, validation_data=val_batches, validation_steps=val_batches.n, )
Digit Recognizer
5,811,807
test_data=test_data[train_data.drop('cuisine',axis=1 ).columns]<prepare_x_and_y>
predictions = model.predict_classes(x_test, verbose=0)
Digit Recognizer
5,811,807
<split><EOS>
submissions=pd.DataFrame({"ImageId": list(range(1,len(predictions)+1)) , "Label": predictions}) submissions.to_csv("DR.csv", index=False, header=True )
Digit Recognizer
2,619,265
<SOS> metric: categorizationaccuracy Kaggle data source: digit-recognizer<train_model>
%matplotlib inline keras_version = keras.__version__ tf_version = K.tensorflow_backend.tf.VERSION print("keras version:", keras_version) print(K.backend() , "version:", tf_version )
Digit Recognizer
2,619,265
lr=LogisticRegression() lr.fit(X_train,y_train) lr.score(X_val,y_val )<predict_on_test>
rawdata = np.loadtxt('.. /input/train.csv', dtype=int, delimiter=',', skiprows=1 )
Digit Recognizer
2,619,265
test_data['cuisine']=lr.predict(test_data.drop(['id','ingredients'],axis=1))<prepare_output>
y_oh = to_categorical(y, num_classes) X_scaled = X / 127.5 - 1 X_scaled = np.expand_dims(X_scaled, -1) num_val = int(y.shape[0] * 0.1) validation_mask = np.zeros(y.shape[0], np.bool) np.random.seed(1) for c in range(num_classes): idxs = np.random.choice(np.flatnonzero(y == c), num_val // 10, replace=False) valida...
Digit Recognizer
2,619,265
Submission=test_data[['id','cuisine']] Submission.set_index('id',inplace=True )<save_to_csv>
def conv2D_bn_relu(x, filters, kernel_size, strides, padding='valid', kernel_initializer='glorot_uniform', name=None): x = layers.Conv2D(filters=filters, kernel_size=kernel_size, strides=strides, padding=padding, kernel_initializer=kernel_initializer, name=name, use_bias=False )(x) x = layers.BatchNormalization(scal...
Digit Recognizer
2,619,265
Submission.to_csv('Submission.csv' )<import_modules>
K.clear_session() stem_width = 64 inputs = layers.Input(shape=X_scaled.shape[1:]) x = conv2D_bn_relu(inputs, filters=stem_width, kernel_size=5, strides=2, padding='valid', name='conv_1') x = inception_module_A(x, filters=int(1.5*stem_width)) x = layers.SpatialDropout2D(0.2 )(x) x = inception_module_A(x, filters=int(...
Digit Recognizer
2,619,265
import xgboost as xgb import numpy as np import pandas as pd import random import optuna from sklearn.model_selection import KFold, train_test_split from sklearn.metrics import accuracy_score from sklearn.metrics import mean_squared_error<load_from_csv>
epsilon = 0.001 y_train_smooth = y_train *(1 - epsilon)+ epsilon / 10 print(y_train_smooth )
Digit Recognizer
2,619,265
train = pd.read_csv(".. /input/tabular-playground-series-feb-2021/train.csv") test = pd.read_csv(".. /input/tabular-playground-series-feb-2021/test.csv" )<categorify>
def elastic_transform(image, alpha_range, sigma, random_state=None): if random_state is None: random_state = np.random.RandomState(None) if np.isscalar(alpha_range): alpha = alpha_range else: alpha = np.random.uniform(low=alpha_range[0], high=alpha_range[1]) shape = image.shape dx = gaussian_filter(( random_state.r...
Digit Recognizer
2,619,265
df=train for c in df.columns: if df[c].dtype=='object': lbl = LabelEncoder() df[c]=df[c].fillna('N') lbl.fit(list(df[c].values)) df[c] = lbl.transform(df[c].values) train=df<categorify>
class CosineAnneal(keras.callbacks.Callback): def __init__(self, max_lr, min_lr, T, T_mul=1, decay_rate=1.0): self.max_lr = max_lr self.min_lr = min_lr self.decay_rate = decay_rate self.T = T self.T_cur = 0 self.T_mul = T_mul self.step = 0 def on_batch_begin(self, batch, logs=None): if self.T <= self.T_cur: self.max_...
Digit Recognizer