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__all__ = ['SENet', 'senet154', 'se_resnet50', 'se_resnet101', 'se_resnet152', 'se_resnext50_32x4d', 'se_resnext101_32x4d'] pretrained_settings = { 'senet154': { 'imagenet': { 'url': 'http://data.lip6.fr/cadene/pretrainedmodels/senet154-c7b49a05.pth', 'input_space': 'RGB', 'input_size': [3, 224, 224], 'input_range': ...
scaler = StandardScaler() Xs_train = scaler.fit_transform(X_train) Xs_test = scaler.transform(X_test )
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sys.path.append('/kaggle/working/') class GeM(nn.Module): def __init__(self, p=3, eps=1e-6): super(GeM,self ).__init__() self.p = Parameter(torch.ones(1)*p) self.eps = eps def forward(self, x): return gem(x, p=self.p, eps=self.eps) def __repr__(self): return self.__class__.__name__ + '(' + 'p=' + '{:.4f}'.format(sel...
logreg = LogisticRegression() logreg.fit(Xs_train, y_train )
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TEST_IMAGE_PATH = '/kaggle/input/aptos2019-blindness-detection/test_images' device = torch.device("cuda") test_images = glob(os.path.join(TEST_IMAGE_PATH, '*.png')) <init_hyperparams>
Y_pred=logreg.predict(Xs_test )
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def make_predictions(model, test_images, transforms, size=256, device=torch.device("cuda")) : predictions = [] for i, im_path in enumerate(test_images): image = Image.open(im_path) image = image.resize(( size, size), resample=Image.BILINEAR) image = transforms(image ).to(device) output = model(image.unsqueeze(0)) ou...
logreg.score(Xs_train, y_train )
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MODEL_PATH = '.. /input/densenet121/model_densenet121_bs64_30.pth' model = get_densenet121_gem(pretrain=False) model.to(device) model.load_state_dict(torch.load(MODEL_PATH, map_location='cuda:0')) model.eval() norm = transforms.Compose([transforms.ToTensor() ]) <choose_model_class>
submission = pd.DataFrame({ "PassengerId": test["PassengerId"], "Survived": Y_pred }) submission.to_csv('submission2_LG.csv', index=False )
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MODEL_PATH = '.. /input/seresnet50testpseudo/model10.pth' model = get_se_resnet50_gem(pretrain=False) model.to(device) model.load_state_dict(torch.load(MODEL_PATH, map_location='cuda:0')) model.eval() norm = transforms.Compose([transforms.ToTensor() , transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])...
lr_pipe2 = Pipeline([ ('sscaler2', StandardScaler()), ('logreg2', LogisticRegression(penalty='l1', C=0.1, solver='liblinear')) ])
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MODEL_PATH = '.. /input/seresnet50pseudo-512/model30.pth' model = get_se_resnet50_gem(pretrain=False) model.to(device) model.load_state_dict(torch.load(MODEL_PATH, map_location='cuda:0')) model.eval() norm = transforms.Compose([transforms.ToTensor() , transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])...
pipe_2_params = {'sscaler2__with_mean': [True, False], 'sscaler2__with_std': [True, False], 'logreg2__C': [0.1, 0.2,0.3], 'logreg2__solver':['newton-cg', 'lbfgs', 'liblinear', 'sag', 'saga'], 'logreg2__fit_intercept': [True, False], 'logreg2__penalty': ['l1', 'l2']}
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final_predictions = predictions_seresnet_512 <save_to_csv>
pipe_2_gridsearch = GridSearchCV(lr_pipe2, pipe_2_params, cv=5, verbose=1 )
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submission = pd.DataFrame(final_predictions) submission.columns = ['id_code','diagnosis'] submission.loc[submission.diagnosis < 0.75, 'diagnosis'] = 0 submission.loc[(0.75 <= submission.diagnosis)&(submission.diagnosis < 1.5), 'diagnosis'] = 1 submission.loc[(1.5 <= submission.diagnosis)&(submission.diagnosis < 2.5), ...
pipe_2_gridsearch.fit(X_train, y_train);
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!pip install.. /input/weights/timm-0.3.1-py3-none-any.whl<import_modules>
pipe_2_gridsearch.best_score_
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device = "cuda:0" <import_modules>
pipe_2_gridsearch.best_estimator_
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FeaturePyramidNetwork, LastLevelMaxPool, ) def gem(x, p=3, eps=1e-6): return F.avg_pool2d(x.clamp(min=eps ).pow(p),(x.size(-2), x.size(-1)) ).pow(1./p) class GeM(nn.Module): def __init__(self, p=3, eps=1e-6, flatten=False): super(GeM,self ).__init__() self.p = Parameter(torch.ones(1)*p) self.eps = eps self.flatten ...
pre = pipe_2_gridsearch.predict(X_test )
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threshold = [0.75, 1.5, 2.5, 3.5] def regress2class(out): prediction = 0 for i in range(4): prediction +=(out.data >= threshold[i] ).squeeze().cpu().item() return prediction def ordinal2class_prob(out): pred_prob = torch.zeros(out.size(0), 5 ).cuda() pred_prob[:, 0] =(1 - out[:, 0] ).squeeze() pred_prob[:, 1] =(out[:, ...
submission = pd.DataFrame({ "PassengerId": test["PassengerId"], "Survived": pre }) submission.to_csv('submission1_LG_pipline.csv', index=False )
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def gem(x, p=3, eps=1e-6): return F.avg_pool2d(x.clamp(min=eps ).pow(p),(x.size(-2), x.size(-1)) ).pow(1./p) class GeM(nn.Module): def __init__(self, p=3, eps=1e-6, flatten=False): super(GeM,self ).__init__() self.p = Parameter(torch.ones(1)*p) self.eps = eps self.flatten = flatten def forward(self, x): x = gem(x, p=...
lr_pipe2 = Pipeline([ ('sscaler2', StandardScaler()), ('knn', KNeighborsClassifier()) ]) pipe_2_params = {'sscaler2__with_mean': [True, False], 'sscaler2__with_std': [True, False], 'knn__n_neighbors': [3, 5, 7, 9, 11, 20, 50, 100], 'knn__weights': ['uniform', 'distance'], 'knn__metric': ['manhattan', 'euclidean']} ...
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test_ids = pd.read_csv('.. /input/aptos2019-blindness-detection/test.csv') test_ids = np.squeeze(test_ids.values) transform1 = transforms.Compose([ trim() , cropTo4_3() , transforms.Resize(( 288, 384)) , transforms.ToTensor() , transforms.Normalize(mean=[0.384, 0.258, 0.174], std=[0.124, 0.089, 0.094]), ]) transform...
pipe_2_gridsearch.fit(X_train, y_train);
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df = pd.DataFrame(submission, columns=["id_code", "diagnosis"]) df.to_csv("submission.csv", index=False )<import_modules>
y_pre_GS_knn = pipe_2_gridsearch.predict(X_test )
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from __future__ import print_function, absolute_import import os import sys import time import datetime import argparse import os.path as osp import numpy as np import random from PIL import Image import tqdm import cv2 import csv import math import torchvision as tv import torchvision import torch.nn.functional as F i...
pipe_2_gridsearch.best_score_
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name_file='.. /input/aptos2019-blindness-detection/test.csv' csv_file=csv.reader(open(name_file,'r')) content=[] for line in csv_file: content.append(line[0]+'.png') content=content[1:]<normalization>
pipe_2_gridsearch.best_estimator_
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def gem(x, p=3, eps=1e-6): return F.avg_pool2d(x.clamp(min=eps ).pow(p),(x.size(-2), x.size(-1)) ).pow(1./p) class GeM(nn.Module): def __init__(self, p=3, eps=1e-6): super(GeM,self ).__init__() self.p = Parameter(torch.ones(1)*p) self.eps = eps def forward(self, x): return gem(x, p=self.p, eps=self.eps) def __repr__...
submission = pd.DataFrame({ "PassengerId": test["PassengerId"], "Survived": y_pre_GS_knn }) submission.to_csv('submission2_GS_knn.csv', index=False )
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def cv_imread(file_path): cv_img=cv2.imdecode(np.fromfile(file_path,dtype=np.uint8),-1) return cv_img def change_size(image): b=cv2.threshold(image,15,255,cv2.THRESH_BINARY) binary_image=b[1] binary_image=cv2.cvtColor(binary_image,cv2.COLOR_BGR2GRAY) print(binary_image.shape) x=binary_image.shape[0] print...
knn = KNeighborsClassifier()
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def load_para_dict(model1): state_dict_1=torch.load(model1) new_state_dict = OrderedDict() for k, v in state_dict_1.items() : if 'module' in k: name = k[7:] else: name=k new_state_dict[name] = v return new_state_dict<set_options>
knn.fit(Xs_train, y_train )
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%reload_ext autoreload %autoreload 2 %matplotlib inline <import_modules>
knn.score(Xs_train, y_train )
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from fastai import * from fastai.vision import * import pandas as pd import matplotlib.pyplot as plt<set_options>
cross_val_score(knn, Xs_train, y_train, cv=5 ).mean()
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print('Make sure cudnn is enabled:', torch.backends.cudnn.enabled )<define_variables>
pre=knn.predict(X_test )
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PATH = Path('.. /input/aptos2019-blindness-detection' )<load_from_csv>
submission = pd.DataFrame({ "PassengerId": test["PassengerId"], "Survived": pre }) submission.to_csv('submission2_KNN.csv', index=False )
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df = pd.read_csv(PATH/'train.csv') df.head()<set_options>
model=RandomForestClassifier() param={'n_estimators':[100,200,300], 'max_depth':[1,3,5,7], 'criterion':["gini"], 'max_features': [1,3,5], "min_samples_split": [2,3,5] } clf=GridSearchCV(estimator=model, param_grid=param, scoring="accuracy", verbose=1, n_jobs=-1, cv=5) clf.fit(X_train, y_train) clf.best_estimator_ clf...
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def seed_everything(seed): random.seed(seed) os.environ['PYTHONHASHSEED'] = str(seed) np.random.seed(seed) torch.manual_seed(seed) torch.cuda.manual_seed(seed) torch.backends.cudnn.deterministic = True SEED = 999 seed_everything(SEED )<feature_engineering>
pre=clf.predict(X_test)
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base_image_dir = os.path.join('.. ', 'input/aptos2019-blindness-detection/') train_dir = os.path.join(base_image_dir,'train_images/') df = pd.read_csv(os.path.join(base_image_dir, 'train.csv')) df['path'] = df['id_code'].map(lambda x: os.path.join(train_dir,'{}.png'.format(x))) df = df.drop(columns=['id_code']) df ...
submission = pd.DataFrame({ "PassengerId": test["PassengerId"], "Survived": pre }) submission.to_csv('submission2_RF_GS.csv', index=False )
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len_df = len(df) len_df<set_options>
lr_pipe2 = Pipeline([ ('sscaler2', StandardScaler()), ('rf', RandomForestClassifier() ) ]) pipe_2_params = {'sscaler2__with_mean': [True, False], 'sscaler2__with_std': [True, False], 'rf__bootstrap': [True], 'rf__max_depth': [1,3,5,7], 'rf__max_features': [1, 3,5], 'rf__criterion':["gini"], 'rf__min_samples_leaf':...
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im = Image.open(df['path'][1]) width, height = im.size print(width,height) im.show()<define_variables>
pipe_2_gridsearch.fit(X_train, y_train);
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bs = 64 sz=224<define_variables>
pipe_2_gridsearch.best_score_
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data.show_batch(rows=3, figsize=(7,6))<compute_test_metric>
pre= pipe_2_gridsearch.predict(X_test )
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def quadratic_kappa(y_hat, y): return torch.tensor(cohen_kappa_score(torch.round(y_hat), y, weights='quadratic'),device='cuda:0' )<choose_model_class>
submission = pd.DataFrame({ "PassengerId": test["PassengerId"], "Survived": pre }) submission.to_csv('submission2_RF_pip_GS.csv', index=False )
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learn = cnn_learner(data, base_arch=models.resnet50, metrics = [quadratic_kappa] )<find_best_params>
lr_pipe3 = Pipeline([ ('sscaler2', StandardScaler()), ('dt', DecisionTreeClassifier() ) ]) pipe_3_params = {'sscaler2__with_mean': [True, False], 'sscaler2__with_std': [True, False], 'dt__max_depth': [10], 'dt__random_state':[100], 'dt__max_features': [1, 3,5], 'dt__criterion':["gini"], 'dt__min_samples_leaf': [10...
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learn.lr_find() <train_model>
pipe_3_gridsearch.fit(X_train, y_train);
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learn.fit_one_cycle(5,max_lr = 1e-2 )<train_model>
pipe_3_gridsearch.best_score_
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learn.fit_one_cycle(6, max_lr=slice(1e-6,1e-3))<set_options>
pre= pipe_3_gridsearch.predict(X_test )
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learn.export() learn.save('stage-2' )<find_best_params>
submission = pd.DataFrame({ "PassengerId": test["PassengerId"], "Survived": pre }) submission.to_csv('submission2_DT_pip_GS.csv', index=False )
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interp = ClassificationInterpretation.from_learner(learn) losses,idxs = interp.top_losses() len(data.valid_ds)==len(losses)==len(idxs )<predict_on_test>
tree = DecisionTreeClassifier(criterion='gini',max_depth=10,random_state=100,min_samples_leaf=10) tree.fit(X_train,y_train) y_predicted = tree.predict(Xs_test)
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valid_preds = learn.get_preds(ds_type=DatasetType.Valid )<import_modules>
tree.score(Xs_train, y_train )
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import numpy as np import pandas as pd import os import scipy as sp from functools import partial from sklearn import metrics from collections import Counter import json<compute_test_metric>
pre= tree.predict(X_test )
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class OptimizedRounder(object): def __init__(self): self.coef_ = 0 def _kappa_loss(self, coef, X, y): X_p = np.copy(X) for i, pred in enumerate(X_p): if pred < coef[0]: X_p[i] = 0 elif pred >= coef[0] and pred < coef[1]: X_p[i] = 1 elif pred >= coef[1] and pred < coef[2]: X_p[i] = 2 elif pred >= coef[2] and pred < coe...
submission = pd.DataFrame({ "PassengerId": test["PassengerId"], "Survived": pre }) submission.to_csv('submission2_DT.csv', index=False )
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optR = OptimizedRounder() optR.fit(valid_preds[0],valid_preds[1] )<load_from_csv>
SVM = SVC() SVM.fit(Xs_train, y_train) SVM_predictions = SVM.predict(Xs_test) SVM.score(Xs_train, y_train )
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sample_df = pd.read_csv('.. /input/aptos2019-blindness-detection/sample_submission.csv') sample_df.head()<define_variables>
submission = pd.DataFrame({ "PassengerId": test["PassengerId"], "Survived": SVM_predictions }) submission.to_csv('submission2_SVM.csv', index=False )
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learn.data.add_test(ImageList.from_df(sample_df,'.. /input/aptos2019-blindness-detection',folder='test_images',suffix='.png'))<feature_engineering>
scores ={'LR_pip': 0.772,'LR': 0.770,'Knn_pip': 0.779, 'Knn': 0.669, 'RF_GS': 0.787, 'RF_pip_GS': 0.775, 'DT_pip_GS': 0.760, 'DT':0.779, 'SVM': 0.779}
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preds,y = learn.TTA(ds_type=DatasetType.Test )<predict_on_test>
!jupyter nbextension enable --py widgetsnbextension
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test_predictions = optR.predict(preds, coefficients )<data_type_conversions>
data = pd.read_csv("/kaggle/input/titanic/train.csv") data.head(5 )
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sample_df.diagnosis = test_predictions.astype(int) sample_df.head()<save_to_csv>
data.groupby('Sex')['Survived'].mean()
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sample_df.to_csv('submission.csv',index=False )<set_options>
data.groupby(['Pclass', 'Sex'])['Survived'].mean()
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%pylab inline <import_modules>
data['Initial']=0 for i in data: data['Initial']=data.Name.str.extract('([A-Za-z]+)\.') pd.crosstab(data.Initial,data.Sex ).T.style.background_gradient(cmap='summer_r' )
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from sklearn.preprocessing import StandardScaler from sklearn.cross_validation import train_test_split from sklearn.preprocessing import LabelEncoder<import_modules>
data['Initial'].replace(['Mlle','Mme','Ms','Dr','Major','Lady','Countess','Jonkheer','Col','Rev','Capt','Sir','Don'], ['Miss','Miss','Miss','Mr','Mr','Mrs','Mrs','Other','Other','Other','Mr','Mr','Mr'],inplace=True) data.groupby('Initial')['Age'].mean()
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from keras.models import Sequential from keras.layers import Dense,Dropout,Activation from keras.utils.np_utils import to_categorical<import_modules>
data.loc[(data.Age.isnull())&(data.Initial=='Mr'),'Age']=33 data.loc[(data.Age.isnull())&(data.Initial=='Mrs'),'Age']=36 data.loc[(data.Age.isnull())&(data.Initial=='Master'),'Age']=5 data.loc[(data.Age.isnull())&(data.Initial=='Miss'),'Age']=22 data.loc[(data.Age.isnull())&(data.Initial=='Other'),'Age']=46 data.Age.is...
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print(sys.version )<import_modules>
data['Embarked'] = data['Embarked'].fillna('S' )
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pd.__version__<set_options>
data['Age_band']=0 data.loc[(data['Age']>16)&(data['Age']<=32),'Age_band']=1 data.loc[(data['Age']>32)&(data['Age']<=48),'Age_band']=2 data.loc[(data['Age']>48),'Age_band']=3
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rcParams['figure.figsize'] = 8,8<load_from_csv>
data['FamilySize'] = data['SibSp'] + data['Parch'] + 1 data['IsAlone'] = 1 data['IsAlone'].loc[data['FamilySize'] > 1] = 0
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data = pd.read_csv('.. /input/train.csv') parent_data = data.copy() ID = data.pop('id' )<categorify>
data['Sex'] = data['Sex'].map({'female': 0, 'male': 1} ).astype(int) data['Embarked'] = data['Embarked'].map({'S': 0, 'C': 1, 'Q': 2} ).astype(int )
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y = data.pop('species') y = LabelEncoder().fit(y ).transform(y) print(y.shape )<normalization>
from sklearn.linear_model import LogisticRegression from sklearn.ensemble import RandomForestClassifier from sklearn.tree import DecisionTreeClassifier from sklearn.model_selection import train_test_split from sklearn import metrics from sklearn.metrics import confusion_matrix from sklearn.model_selection import KFold ...
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X = StandardScaler().fit(data ).transform(data) print(X.shape )<categorify>
train,val=train_test_split(data,test_size=0.3,random_state=42,stratify=data['Survived']) train_X=train[train.columns[1:]] train_Y=train[train.columns[:1]] val_X=val[val.columns[1:]] val_Y=val[val.columns[:1]]
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y_cat = to_categorical(y) print(y_cat.shape )<choose_model_class>
model = LogisticRegression() model.fit(train_X,train_Y) prediction=model.predict(val_X) print('The accuracy of the Logistic Regression is',metrics.accuracy_score(prediction,val_Y))
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model = Sequential() model.add(Dense(2048,input_dim=192, init='uniform', activation='relu')) model.add(Dropout(0.3)) model.add(Dense(1024, activation='sigmoid')) model.add(Dropout(0.3)) model.add(Dense(99, activation='softmax'))<choose_model_class>
X=data[data.columns[1:]] Y=data['Survived'] kfold = KFold(n_splits=10, random_state=22 )
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model.compile(loss='categorical_crossentropy',optimizer='Adamax', metrics = ["accuracy"] )<train_model>
logistic_cv_result = cross_val_score(LogisticRegression() ,X,Y, cv = kfold,scoring = "accuracy") print('The mean accuracy of the Logistic Regression under 10-fold validation is: ', np.mean(logistic_cv_result), 'std is: ', np.std(logistic_cv_result))
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start = time.time() history = model.fit(X,y_cat,batch_size=100, nb_epoch=125,verbose=0, validation_split=0.1) end = time.time() print('runtime: ',"%.3f" %(end-start),' [sec]' )<train_model>
tree_cv_result = cross_val_score(DecisionTreeClassifier() ,X,Y, cv = kfold,scoring = "accuracy") print('The mean accuracy of the decision tree under 10-fold validation is: ', np.mean(tree_cv_result), 'std is: ', np.std(tree_cv_result))
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print('---------------------------------------') print('acc: ',max(history.history['acc'])) print('loss: ',min(history.history['loss'])) print('---------------------------------------') print('val_acc: ',max(history.history['val_acc'])) print('val_loss: ',min(history.history['val_loss']))<load_from_csv>
forest_cv_result = cross_val_score(RandomForestClassifier(n_estimators=100),X,Y, cv = kfold,scoring = "accuracy") print('The mean accuracy of the random forest under 10-fold validation is: ', np.mean(forest_cv_result), 'std is: ', np.std(forest_cv_result))
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test = pd.read_csv('.. /input/test.csv') index = test.pop('id') test = StandardScaler().fit(test ).transform(test) yPred = model.predict_proba(test )<create_dataframe>
forest = RandomForestClassifier(n_estimators=100, min_samples_leaf=1, min_samples_split=10) forest.fit(train_X,train_Y) prediction=forest.predict(val_X) print('The accuracy is',metrics.accuracy_score(prediction,val_Y))
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yPred = pd.DataFrame(yPred,index=index,columns=sort(parent_data.species.unique()))<save_to_csv>
import xgboost as xgb
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fp = open('submission_nn_kernel.csv','w') fp.write(yPred.to_csv() )<define_variables>
gbm = xgb.XGBClassifier( n_estimators= 2000, max_depth= 4, min_child_weight= 2, gamma=0.9, subsample=0.8, colsample_bytree=0.8, objective= 'binary:logistic', scale_pos_weight=1 ).fit(train_X, train_Y) predictions = gbm.predict(val_X) print('The accuracy of XG Boost is',metrics.accuracy_score(predictions,val_Y))
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DEBUG = False<define_variables>
from catboost import CatBoostClassifier, Pool, cv
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sys.path = [ '.. /input/efficientnet-pytorch/EfficientNet-PyTorch/EfficientNet-PyTorch-master', ] + sys.path<import_modules>
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import skimage.io import numpy as np import pandas as pd import torch import torch.nn as nn import torch.nn.functional as F from torch.utils.data import DataLoader, Dataset from efficientnet_pytorch import model as enet import matplotlib.pyplot as plt from tqdm import tqdm_notebook as tqdm <load_from_csv>
cat = CatBoostClassifier( l2_leaf_reg=1, learning_rate=0.003842420425736234, iterations=500, eval_metric='Accuracy', random_seed=42, verbose=False, loss_function='Logloss', ) cv_data = cv(Pool(X, Y, cat_features=range(train_X.shape[1])) , cat.get_params() )
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data_dir = '.. /input/prostate-cancer-grade-assessment' df_train = pd.read_csv(os.path.join(data_dir, 'train.csv')) df_test = pd.read_csv(os.path.join(data_dir, 'test.csv')) df_sub = pd.read_csv(os.path.join(data_dir, 'sample_submission.csv')) model_dir = '.. /input/panda-public-models' image_folder = os.path.join(data...
print('Precise validation accuracy score: {}'.format(np.max(cv_data['test-Accuracy-mean'])) )
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class enetv2(nn.Module): def __init__(self, backbone, out_dim): super(enetv2, self ).__init__() self.enet = enet.EfficientNet.from_name(backbone) self.myfc = nn.Linear(self.enet._fc.in_features, out_dim) self.enet._fc = nn.Identity() def extract(self, x): return self.enet(x) def forward(self, x): x = self.extract(x)...
test_data = pd.read_csv("/kaggle/input/titanic/test.csv") test_data.head()
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def get_tiles(img, mode=0): result = [] h, w, c = img.shape pad_h =(tile_size - h % tile_size)% tile_size +(( tile_size * mode)// 2) pad_w =(tile_size - w % tile_size)% tile_size +(( tile_size * mode)// 2) img2 = np.pad(img,[[pad_h // 2, pad_h - pad_h // 2], [pad_w // 2,pad_w - pad_w//2], [0,0]], constant_values=255)...
test_data['Sex'] = test_data['Sex'].map({'female': 0, 'male': 1} ).astype(int) test_data['Embarked'] = test_data['Embarked'].map({'S': 0, 'C': 1, 'Q': 2} ).astype(int) test_data['Age_band']=0 test_data.loc[(test_data['Age']>16)&(test_data['Age']<=32),'Age_band']=1 test_data.loc[(test_data['Age']>32)&(test_data['Age']...
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dataset = PANDADataset(df, image_size, n_tiles, 0) loader = DataLoader(dataset, batch_size=batch_size, num_workers=num_workers, shuffle=False) dataset2 = PANDADataset(df, image_size, n_tiles, 2) loader2 = DataLoader(dataset2, batch_size=batch_size, num_workers=num_workers, shuffle=False )<save_to_csv>
features = ['Pclass', 'Sex', 'Embarked', 'Age_band', 'IsAlone'] X_test = pd.get_dummies(test_data[features])
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LOGITS = [] LOGITS2 = [] with torch.no_grad() : for data in tqdm(loader): data = data.to(device) logits = models[0](data) LOGITS.append(logits) for data in tqdm(loader2): data = data.to(device) logits = models[0](data) LOGITS2.append(logits) LOGITS =(torch.cat(LOGITS ).sigmoid().cpu() + torch.cat(LOGITS2 ).sigmoi...
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DEBUG = False<define_variables>
cat = CatBoostClassifier( l2_leaf_reg=1, learning_rate=0.003842420425736234, iterations=500, eval_metric='Accuracy', random_seed=42, verbose=False, loss_function='Logloss', ) forest = RandomForestClassifier(n_estimators=100, min_samples_leaf=1, min_samples_split=10 )
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sys.path = [ '.. /input/efficientnet-pytorch/EfficientNet-PyTorch/EfficientNet-PyTorch-master', ] + sys.path<import_modules>
gbm = xgb.XGBClassifier( n_estimators= 2000, max_depth= 4, min_child_weight= 2, gamma=0.9, subsample=0.8, colsample_bytree=0.8, objective= 'binary:logistic', scale_pos_weight=1 )
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import skimage.io import numpy as np import pandas as pd import torch import torch.nn as nn import torch.nn.functional as F from torch.utils.data import DataLoader, Dataset from efficientnet_pytorch import model as enet import matplotlib.pyplot as plt from tqdm import tqdm_notebook as tqdm<load_from_csv>
from sklearn.ensemble import VotingClassifier
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data_dir = '.. /input/prostate-cancer-grade-assessment' df_train = pd.read_csv(os.path.join(data_dir, 'train.csv')) df_test = pd.read_csv(os.path.join(data_dir, 'test.csv')) df_sub = pd.read_csv(os.path.join(data_dir, 'sample_submission.csv')) model_dir = '.. /input/ck-epoch6/' image_folder = os.path.join(data_dir, 'te...
votingC = VotingClassifier(estimators=[('rfc', forest),('xgb', gbm),('cat', cat)], voting='soft', n_jobs=4) votingC = votingC.fit(X, Y )
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class enetv2(nn.Module): def __init__(self, backbone, out_dim): super(enetv2, self ).__init__() self.enet = enet.EfficientNet.from_name(backbone) self.myfc = nn.Linear(self.enet._fc.in_features, out_dim) self.enet._fc = nn.Identity() def extract(self, x): return self.enet(x) def forward(self, x): x = self.extract(x)...
predictions = votingC.predict(X_test) output = pd.DataFrame({'PassengerId': test_data.PassengerId, 'Survived': predictions}) output.to_csv('my_submission.csv', index=False) print("Your submission was successfully saved!" )
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<load_pretrained><EOS>
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<save_to_csv>
!pip uninstall -y dataclasses
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LOGITS = [] LOGITS2 = [] with torch.no_grad() : for data in tqdm(loader): data = data.to(device) logits = models[0](data) LOGITS.append(logits) for data in tqdm(loader2): data = data.to(device) logits = models[0](data) LOGITS2.append(logits) LOGITS =(torch.cat(LOGITS ).sigmoid().cpu() + torch.cat(LOGITS2 ).sigmoi...
train_data = pd.read_csv("/kaggle/input/titanic/train.csv") train_data.head() test_data = pd.read_csv("/kaggle/input/titanic/test.csv")
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warnings.filterwarnings("ignore") sys.path.insert(0, '.. /input/semisupervised-imagenet-models/semi-supervised-ImageNet1K-models-master/') <define_variables>
features = ["Pclass", "Sex", "SibSp", "Parch", "Fare", "Embarked", "Age"] label = ["Survived"] X_train = pd.get_dummies(train_data[features + label]) X_test = pd.get_dummies(test_data[features]) X_train.head()
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DATA = '.. /input/prostate-cancer-grade-assessment/test_images' TEST = '.. /input/prostate-cancer-grade-assessment/test.csv' SAMPLE = '.. /input/prostate-cancer-grade-assessment/sample_submission.csv' MODELS = [f'.. /input/panda-init-class-model1/RNXT50_128krnew1_3featureB_{i}.pth' for i in range(4)] + \ [f'.. /input/p...
X_train.isna().sum()
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class Modelm1(nn.Module): def __init__(self, arch='resnext50_32x4d', n=6, pre=True): super().__init__() m = _resnext(semi_supervised_model_urls[arch], Bottleneck, [3, 4, 6, 3], False, progress=False,\ groups=32,width_per_group=4) self.enc = nn.Sequential(*list(m.children())[:-2]) nc = list(m.children())[-1].in_featur...
X_test.isna().sum()
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class AdaptiveConcatPool2dm1(Module): "Layer that concats `AdaptiveAvgPool2d` and `AdaptiveMaxPool2d`." def __init__(self, sz:Optional[int]=None): "Output will be 2*sz or 2 if sz is None" self.output_size = sz or 1 self.ap = nn.AdaptiveAvgPool2d(self.output_size) self.mp = nn.AdaptiveMaxPool2d(self.output_size) def f...
X_train = X_train.fillna(X_train.mean()) X_test = X_test.fillna(X_train.mean() )
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class AdaptiveConcatPool2dm(Module): "Layer that concats `AdaptiveAvgPool2d` and `AdaptiveMaxPool2d`." def __init__(self, sz:Optional[int]=None): "Output will be 2*sz or 2 if sz is None" self.output_size = sz or 1 self.ap = nn.AdaptiveAvgPool2d(self.output_size) self.mp = nn.AdaptiveMaxPool2d(self.output_size) def fo...
y = X_train[label].values.ravel() X_train = X_train.drop(label, axis=1 )
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models = [] for path in MODELS[:-4]: state_dict = torch.load(path,map_location=torch.device('cpu')) model = Model(n=1+10) model.load_state_dict(state_dict) model.float() model.eval() model.cuda() models.append(model) for path in MODELS[-4:]: state_dict = torch.load(path,map_location=torch.device('cpu')) model = Mode...
dt_config = { "class": DecisionTreeClassifier, "criterion": tune.choice(['gini', 'entropy']), "max_depth": tune.randint(2, 8), "min_samples_split": tune.randint(2, 10), 'min_samples_leaf': tune.randint(1, 10), "random_state": 1 } rf_config = { "class": RandomForestClassifier, "max_depth": tune.randint(2, 8), "n_estimat...
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sub_df = pd.read_csv(SAMPLE) if os.path.exists(DATA): ds = PandaDataset(DATA,TEST) dl = DataLoader(ds, batch_size=bs, num_workers=nworkers, shuffle=False) names,preds = [],[] with torch.no_grad() : for x,x2,y in tqdm(dl): x = x.cuda() x = torch.stack([x,x.flip(-1),x.flip(-2),x.flip(-1,-2),x.transpose(-1,-2),\ x.tran...
methods = {"rf": rf_config, "xgb": xgb_config, "svm": svm_config, "dt": dt_config} def export_csv(predictions, name:str): output = pd.DataFrame({'PassengerId': test_data.PassengerId, 'Survived': predictions}) filename = f'{name}_submission.csv' output.to_csv(filename, index=False) print(f"Your submission({name})was s...
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sub_df.to_csv("submission.csv", index=False) sub_df.head()<define_variables>
def run_experiment(method: str, num_samples: int=50)-> Dict[str, Any]: result = run_tune(method, num_samples ).get_best_trial(metric="mean_accuracy", mode="max") _config = deepcopy(result.config) model_class = _config["class"] _config.pop("class") model = model_class(**_config) model.fit(X_train, y) predictions = ...
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package_path = '/kaggle/input/efficientnet-pytorch/EfficientNet-PyTorch/EfficientNet-PyTorch-master' sys.path.append(package_path) <define_variables>
dt = run_experiment(method="dt", num_samples=100) print(f"result {dt.last_result}") print(f"{dt.config}" )
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<define_variables>
rf = run_experiment(method="rf", num_samples=100) print(f"result {rf.last_result}") print(f"{rf.config}" )
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mean_224 = torch.tensor([1.0-0.82097102, 1.0-0.63302738, 1.0-0.75392824]) std_224 = torch.tensor([0.37723779, 0.49839178, 0.4015415]) first_resnext_pth_path_224 = ".. /input/lb91-224tile/LB91_224tile_best_resnext50_X20_30e_0.pth" ensemble_1 ={"mean":mean_224,"std":std_224,"tileSize":224,"isExpandTile":False,"arch":"r...
xgb = run_experiment("xgb", num_samples=100) print(f"result {xgb.last_result}") print(f"{xgb.config}" )
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<choose_model_class><EOS>
svm = run_experiment(method="svm", num_samples=8) print(f"result {svm.last_result}") print(f"{svm.config}" )
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<choose_model_class>
%matplotlib inline titanic_df = pd.read_csv('.. /input/titanic/train.csv') titanic_df.head(5 )
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segmmodel = timm.create_model('mixnet_xl', pretrained=False) for param in segmmodel.parameters() : param.requires_grad = False segmmodel.classifier=nn.Linear(1536, 1) segmmodel.fc = nn.Linear(1536, 1 )<normalization>
titanic_df['Age'].fillna(titanic_df['Age'].mean() , inplace=True) titanic_df['Cabin'].fillna('N',inplace=True) titanic_df['Embarked'].fillna('N',inplace=True) titanic_df.isnull().sum()
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checkpoint = torch.load(mixnet_pth, map_location=device) segmmodel.load_state_dict(checkpoint) segmmodel.eval() segmmodel.cuda() del checkpoint<load_pretrained>
print('Sex ','-------------- ', titanic_df['Sex'].value_counts() ,' ') print('Cabin ','-------------- ', titanic_df['Cabin'].value_counts() ,' ') print('Embarked ','-------------- ', titanic_df['Embarked'].value_counts() ,' ' )
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aknell_models = [] for model_index, path in enumerate(MODELS): print("path",path) state_dict = torch.load(path,map_location=torch.device(device)) model = Model(arch=ensemble_list[model_index]['arch']) model.load_state_dict(state_dict) model.float() model.eval() model.cuda() aknell_models.append(model) del state_dic...
titanic_df['Cabin'] = titanic_df['Cabin'].str[:1] print(titanic_df['Cabin'].value_counts() )
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test=pd.read_csv(TEST) if chk: pass test=test[:][:nchk]<define_variables>
titanic_df.groupby(['Sex','Survived'])['Survived'].count()
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test_image_dir='/kaggle/input/prostate-cancer-grade-assessment/test_images' if os.path.exists(test_image_dir): print('test set exist') chk=False mode='test' test_image_dir='/kaggle/input/prostate-cancer-grade-assessment/{}_images'.format(mode) csv_path='/kaggle/input/prostate-cancer-grade-assessment/{}.csv'.format(mo...
def encode_feature(dataDF): features = ['Cabin','Sex','Embarked'] for feature in features: le = preprocessing.LabelEncoder() le = le.fit(dataDF[feature]) dataDF[feature] = le.transform(dataDF[feature]) return dataDF titanic_df = encode_feature(titanic_df) titanic_df.head()
Titanic - Machine Learning from Disaster