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train_cfg = cfg["train_data_loader"] rasterizer = build_rasterizer(cfg, dm) train_zarr = ChunkedDataset(dm.require(train_cfg["key"])).open() train_dataset = AgentDataset(cfg, train_zarr, rasterizer) train_dataloader = DataLoader(train_dataset, shuffle=train_cfg["shuffle"], batch_size=train_cfg["batch_size"], num_work...
display(data_train.SibSp.value_counts(dropna=False ).sort_index()) display(data_test.SibSp.value_counts(dropna=False ).sort_index() )
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test_cfg = cfg["test_data_loader"] rasterizer = build_rasterizer(cfg, dm) test_zarr = ChunkedDataset(dm.require(test_cfg["key"])).open() test_mask = np.load(f"{DIR_INPUT}/scenes/mask.npz")["arr_0"] test_dataset = AgentDataset(cfg, test_zarr, rasterizer, agents_mask=test_mask) test_dataloader = DataLoader(test_dataset...
display(data_train.Parch.value_counts(dropna=False ).sort_index()) display(data_test.Parch.value_counts(dropna=False ).sort_index() )
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class LyftMultiModel(nn.Module): def __init__(self, cfg: Dict, num_modes=3): super().__init__() architecture = cfg["model_params"]["model_architecture"] backbone = eval(architecture )(pretrained=True, progress=True) self.backbone = backbone num_history_channels =(cfg["model_params"]["history_num_frames"] + 1)* 2 num_i...
display(data_train.Embarked.value_counts(dropna=False ).sort_index()) display(data_test.Embarked.value_counts(dropna=False ).sort_index() )
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def forward(data, model, device, criterion = pytorch_neg_multi_log_likelihood_batch): inputs = data["image"].to(device) target_availabilities = data["target_availabilities"].to(device) targets = data["target_positions"].to(device) preds, confidences = model(inputs) loss = criterion(targets, preds, confidences, targ...
import seaborn as sns import matplotlib.pyplot as plt
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device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu") model = LyftMultiModel(cfg) weight_path = cfg["model_params"]["weight_path"] if weight_path: model.load_state_dict(torch.load(weight_path)) model.to(device) optimizer = optim.Adam(model.parameters() , lr=cfg["model_params"]["lr"]) print(f'devic...
data_test[(data_test.Embarked=='S')].groupby(['Pclass', 'Sex'] ).size()
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print(model )<init_hyperparams>
data_train = pd.get_dummies(data_train, columns=['Pclass', 'Sex', 'SibSp', 'Parch', 'Embarked']) data_train.info()
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if cfg["model_params"]["train"]: tr_it = iter(train_dataloader) progress_bar = tqdm(range(cfg["train_params"]["max_num_steps"])) num_iter = cfg["train_params"]["max_num_steps"] losses_train = [] iterations = [] metrics = [] times = [] model_name = cfg["model_params"]["model_name"] start = time.time() for i in progress...
data_test = pd.get_dummies(data_test, columns=['Pclass', 'Sex', 'SibSp', 'Parch', 'Embarked']) data_test.info()
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pred_path = 'submission.csv' write_pred_csv(pred_path, timestamps=np.concatenate(timestamps), track_ids=np.concatenate(agent_ids), coords=np.concatenate(future_coords_offsets_pd), confs = np.concatenate(confidences_list) )<set_options>
data_train['Age'] =(data_train.Age//10*10 )
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sns.set() %matplotlib inline EPOCHS = 150 BATCH_SIZE = 16 SEED = 20031976 LRATE = 0.0001 VERBOSE=0 <load_from_csv>
data_test['Age'] =(data_test.Age//10*10 )
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np.random.seed(SEED) tf.set_random_seed(SEED) train_df = pd.read_csv('/kaggle/input/aptos2019-blindness-detection/train.csv') test_df = pd.read_csv('/kaggle/input/aptos2019-blindness-detection/test.csv') print("Datasets loaded.. ") print('Train DF Shape', train_df.shape )<train_model>
data_train = pd.get_dummies(data_train, columns=['Age'] )
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x_resampled, y_resampled = SMOTE(random_state=SEED ).fit_sample(x_train.reshape(x_train.shape[0], -1), train_df['diagnosis'].ravel()) print("x_resampled.shape=",x_resampled.shape) print("y_resampled.shape=",y_resampled.shape) x_train = x_resampled.reshape(x_resampled.shape[0], 224, 224, 3) y_train = pd.get_dummies(...
data_test = pd.get_dummies(data_test, columns=['Age'] )
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y_train_multi = np.empty(y_train.shape, dtype=y_train.dtype) y_train_multi[:, 4] = y_train[:, 4] for i in range(3, -1, -1): y_train_multi[:, i] = np.logical_or(y_train[:, i], y_train_multi[:, i+1]) print("Original y_train:", y_train.sum(axis=0)) print("Multilabel version:", y_train_multi.sum(axis=0))<split>
b = data_train.pop('Survived') data_train = pd.concat([data_train, b], axis=1) data_train.head()
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x_sptrain, x_spval, y_sptrain, y_spval = train_test_split( x_train, y_train_multi, test_size=0.10, random_state=SEED ) print("train-validation splitted..." )<train_model>
X = data_train.drop(columns = ['Survived', 'PassengerId'], axis=1 )
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def create_datagen() : return ImageDataGenerator( zoom_range=0.10, fill_mode='constant', cval=0., horizontal_flip=True, vertical_flip=True, ) data_generator = create_datagen().flow(x_sptrain, y_sptrain, batch_size=BATCH_SIZE, seed=SEED) print("Image data augmentated..." )<compute_test_metric>
y = data_train.Survived
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def precision(y_true, y_pred): true_positives = K.sum(K.round(K.clip(y_true * y_pred, 0, 1))) predicted_positives = K.sum(K.round(K.clip(y_pred, 0, 1))) precision = true_positives /(predicted_positives + K.epsilon()) return precision def recall(y_true, y_pred): true_positives = K.sum(K.round(K.clip(y_true * y_pred, ...
from sklearn.model_selection import train_test_split
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from keras.applications import DenseNet169,DenseNet121 <choose_model_class>
from sklearn.model_selection import train_test_split
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densenet = DenseNet121( weights='/kaggle/input/densenet-keras/DenseNet-BC-121-32-no-top.h5', include_top=False, input_shape=(224,224,3) ) model = Sequential() model.add(densenet) model.add(layers.GlobalAveragePooling2D()) model.add(layers.Dropout(0.2)) model.add(layers.Dense(5, activation='sigmoid')) model.compile(...
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.25, random_state=2 )
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class KappaMetrics(Callback): def on_train_begin(self, logs={}): self.val_kappas = [] def on_epoch_end(self, epoch, logs={}): X_val, y_val = self.validation_data[:2] y_val = y_val.sum(axis=1)- 1 y_pred = self.model.predict(X_val)> 0.5 y_pred = y_pred.astype(int ).sum(axis=1)- 1 _val_kappa = cohen_kappa_score( y_val, y...
from sklearn.model_selection import KFold from sklearn.model_selection import cross_val_score from sklearn.ensemble import RandomForestClassifier from sklearn.neighbors import KNeighborsClassifier from sklearn.metrics import accuracy_score
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with open('history.json', 'w')as f: json.dump(history.history, f) history_df = pd.DataFrame(history.history) history_df.head(EPOCHS )<save_to_csv>
num_trees = 1000 max_features = 3 kfold = KFold(n_splits=10, random_state=7) rfc = RandomForestClassifier(n_estimators=num_trees, max_features=max_features )
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y_test = model.predict(x_test)> 0.5 y_test = y_test.astype(int ).sum(axis=1)- 1 test_df['diagnosis'] = y_test test_df.to_csv('submission.csv',index=False) display(test_df.head(5)) <set_options>
rfc.fit(X_train, y_train )
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sns.set() %matplotlib inline EPOCHS = 50 BATCH_SIZE = 16 SEED = 20031976 LRATE = 0.00005 VERBOSE=0 <load_from_csv>
rfc.score(X_train, y_train )
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np.random.seed(SEED) tf.set_random_seed(SEED) train_df = pd.read_csv('/kaggle/input/aptos2019-blindness-detection/train.csv') test_df = pd.read_csv('/kaggle/input/aptos2019-blindness-detection/test.csv') print("Datasets loaded.. ") print('Train DF Shape', train_df.shape )<train_model>
rfc.score(X_test, y_test )
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x_resampled, y_resampled = SMOTE(random_state=SEED ).fit_sample(x_train.reshape(x_train.shape[0], -1), train_df['diagnosis'].ravel()) print("x_resampled.shape=",x_resampled.shape) print("y_resampled.shape=",y_resampled.shape) x_train = x_resampled.reshape(x_resampled.shape[0], 224, 224, 3) y_train = pd.get_dummies(...
y_pred = rfc.predict(X_test )
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y_train_multi = np.empty(y_train.shape, dtype=y_train.dtype) y_train_multi[:, 4] = y_train[:, 4] for i in range(3, -1, -1): y_train_multi[:, i] = np.logical_or(y_train[:, i], y_train_multi[:, i+1]) print("Original y_train:", y_train.sum(axis=0)) print("Multilabel version:", y_train_multi.sum(axis=0))<split>
from sklearn.metrics import accuracy_score
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x_sptrain, x_spval, y_sptrain, y_spval = train_test_split( x_train, y_train_multi, test_size=0.10, random_state=SEED ) print("train-validation splitted..." )<train_model>
acc = accuracy_score(y_test, y_pred )
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def create_datagen() : return ImageDataGenerator( zoom_range=0.10, fill_mode='constant', cval=0., horizontal_flip=True, vertical_flip=True, ) data_generator = create_datagen().flow(x_sptrain, y_sptrain, batch_size=BATCH_SIZE, seed=SEED) print("Image data augmentated..." )<compute_test_metric>
data_test.isnull().sum()
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def precision(y_true, y_pred): true_positives = K.sum(K.round(K.clip(y_true * y_pred, 0, 1))) predicted_positives = K.sum(K.round(K.clip(y_pred, 0, 1))) precision = true_positives /(predicted_positives + K.epsilon()) return precision def recall(y_true, y_pred): true_positives = K.sum(K.round(K.clip(y_true * y_pred, ...
data_test = data_test.drop(columns=['PassengerId'] )
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from keras.applications import DenseNet169 <choose_model_class>
df = pd.DataFrame({'PassengerId': range(892, 1310), 'Survived':(rfc.predict(data_test)) } )
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<compute_train_metric><EOS>
df.to_csv('TitanicDataSetKaggleVersion2.csv', index=False )
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<save_to_csv>
sns.set(style="whitegrid")
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with open('history.json', 'w')as f: json.dump(history.history, f) history_df = pd.DataFrame(history.history) history_df.head(EPOCHS )<save_to_csv>
path = '/kaggle/input/titanic/' f_train = pd.read_csv(path + 'train.csv') f_test = pd.read_csv(path + 'test.csv' )
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y_test = model.predict(x_test)> 0.5 y_test = y_test.astype(int ).sum(axis=1)- 1 test_df['diagnosis'] = y_test test_df.to_csv('submission.csv',index=False) display(test_df.head(5)) <define_variables>
def missing_value(df): value =(df.isnull().mean()) return value
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spacecutter_package_path = '.. /input/spacecutter/spacecutter-master/spacecutter-master/' sys.path.append(spacecutter_package_path) enet_package_path = '.. /input/efficientnet/efficientnet-pytorch/EfficientNet-PyTorch/' sys.path.append(enet_package_path) device = 'cuda' if torch.cuda.is_available() else 'cpu' DEBUG =...
missing_value(f_train )
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class RetinaDataset(Dataset): CACHE_DIR = 'cache' def __init__(self, dataframe, img_size, img_scale, train_transform, use_base_transform, use_cache=False): if use_cache and not os.path.exists(self.CACHE_DIR): os.mkdir(self.CACHE_DIR) self.use_cache = use_cache self.df = dataframe self.train_transform = train_transform...
missing_value(f_test )
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class NNLogger(object): def __init__(self): self.y_true = {'train': [], 'val': []} self.y_pred = {'train': [], 'val': []} self.y_true = {'train': [], 'val': []} self.y_pred = {'train': [], 'val': []} self.loss = {'train': [], 'val': []} self.elapsed_time = [] self.lr_history = [] self.current_epoch = 1 def step(self): ...
f_train['Title'] = f_train.Name.str.extract('([A-Za-z]+)\.', expand=False )
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class BlindnessDetectionTrainer(object): _train_2015_csv = '.. /input/resized-2015-2019-blindness-detection-images/labels/trainLabels15.csv' _train_2015_img_path = '.. /input/resized-2015-2019-blindness-detection-images/resized train 15/' _train_2015_ext = '.jpg' _train_2019_csv = '.. /input/resized-2015-2019-blindness...
f_train[f_train.Age.isnull() ].Title.value_counts()
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IMG_SIZE = 224 train_params = { 'n_epochs': 2, 'img_size': IMG_SIZE, 'img_scale': 1.2, 'batch_size': 32, 'class_weights': [1, 2, 1, 2, 1], 'lr': 2e-3, 'lr_scale': 0.8, 'step_size': 1, 'train_type': 'old', 'use_base_transform' : ['weighted'], 'train_transform': transforms.Compose([ transforms.RandomHorizontalFlip() , tr...
age_missing = list(f_train[f_train.Age.isnull() ].Title.unique()) for i in age_missing: median_age = f_train.groupby('Title')['Age'].median() [i] f_train.loc[f_train['Age'].isnull() &(f_train['Title'] == i), 'Age'] = median_age
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trainer = BlindnessDetectionTrainer(freeze_pretrained=False, use_cache=DEBUG) lr_find_loss, lr_find_lr = trainer.lr_finder(lr_find_epochs=6, start_lr=3e-5, end_lr=3e-2, train_type='old', img_size=train_params['img_size'], img_scale=train_params['img_scale'], train_transform=train_params['train_transform'], use_base_tr...
missing_value(f_train )
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trainer = BlindnessDetectionTrainer(freeze_pretrained=True, use_cache=DEBUG) trainer.train_loop(**train_params )<split>
f_train['Family'] = f_train['SibSp'] + f_train['Parch'] + 1 f_train['TravelAlone']=np.where(f_train['Family']>1, 0, 1 )
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trainer.train_dataset.show_sample_imgs(6, get_original=True, use_train_transform=False )<split>
f_train['Fare_Bin'] = pd.qcut(f_train['Fare'], 5) label = LabelEncoder() f_train['AgeGroup'] = label.fit_transform(f_train['AgeGroup']) f_train['Fare_Bin'] = label.fit_transform(f_train['Fare_Bin']) f_train['Title'] = label.fit_transform(f_train['Title']) f_train['Sex'] = label.fit_transform(f_train['Sex']) drop_l...
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trainer.train_dataset.show_sample_imgs(6, get_original=False, use_train_transform=train_params['train_transform'] )<load_pretrained>
f_test['Title'] = f_test.Name.str.extract('([A-Za-z]+)\.', expand=False) age_missing = list(f_test[f_test.Age.isnull() ].Title.unique()) for i in age_missing: median_age = f_test.groupby('Title')['Age'].median() [i] f_test.loc[f_test['Age'].isnull() &(f_test['Title'] == i), 'Age'] = median_age f_test.Age.fillna(28, i...
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train_params['n_epochs'] = 4 train_params['lr'] = 3e-3 train_params['step_size'] = 2 train_params['train_type'] = 'old' trainer.load_best_state_dict() trainer.unfreeze() trainer.train_loop(**train_params )<load_pretrained>
X = f_train.drop('Survived', axis = 1) Y = f_train.Survived X_test = f_test X_test = X_test.drop('PassengerId',axis = 1) x_train, x_val, y_train, y_val = train_test_split(X, Y, test_size = 0.22, random_state = 0 )
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train_params['n_epochs'] = 2 train_params['step_size'] = 1 train_params['lr'] = 1e-3 train_params['train_type'] = 'new' trainer.load_best_state_dict() trainer.freeze_except_fc() trainer.train_loop(**train_params )<split>
def basic_model(x_train,y_train,x_val,y_val): model = GradientBoostingClassifier() model.fit(x_train, y_train) y_pred = model.predict(x_val) acc_gbc = round(accuracy_score(y_pred, y_val)* 100, 2) print(f'Gradient Boosting Classifier : Score {acc_gbc}') model = RandomForestClassifier() model.fit(x_train, y_train) y...
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trainer.train_dataset.show_sample_imgs(6, get_original=True, use_train_transform=False )<split>
acc_gbc, acc_rfc, acc_svc, acc_lgbm, acc_xgb = basic_model(x_train, y_train, x_val, y_val )
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trainer.train_dataset.show_sample_imgs(6, get_original=False, use_train_transform=train_params['train_transform'] )<train_model>
models_basic = pd.DataFrame({ 'Model': ['Gradient Boosting Classifier','Random Forest Classifier', 'Support Vector Machines', 'LightGBM Classifier', 'XGB Classifier'], 'Score Basic Model': [acc_gbc, acc_rfc, acc_svc, acc_lgbm, acc_xgb] }) models_basic.sort_values(by='Score Basic Model', ascending=False )
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train_params['n_epochs'] = 8 train_params['step_size'] = 2 train_params['use_base_transform'] = ['weighted'] trainer.load_best_state_dict() trainer.unfreeze() trainer.train_loop(**train_params )<feature_engineering>
class model_objectif(object): def __init__(self, models, x, y): self.models = models self.x = x self.y = y def __call__(self, trial): models, x, y = self.models, self.x, self.y classifier_name = models if classifier_name == "RFC": model = RandomForestClassifier( n_estimators = trial.suggest_int('n_estimators', 10, 100...
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class BlindnessDetectionPredictor(object): def __init__(self, subm_df, state_dict_file, transform, use_base_transform, img_size, img_scale, n_TTA, batch_size): self.subm_df = subm_df self.subm_df['img_path'] = self.subm_df['id_code'].apply( lambda f: _subm_2019_img_path + f + _subm_2019_ext if os.path.isfile( _subm_2...
models = 'RFC' objective = model_objectif(models, X, Y) study_RFC = optuna.create_study(direction='maximize') study_RFC.optimize(objective, n_trials=100 )
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_subm_2019_csv = '.. /input/aptos2019-blindness-detection/sample_submission.csv' _subm_2019_img_path = '.. /input/aptos2019-blindness-detection/test_images/' _subm_2019_ext = '.png' submit_df = pd.read_csv(_subm_2019_csv )<choose_model_class>
best_params_RFC, best_score_RFC = parameters(study_RFC )
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IMG_SIZE = 224 subm_params = { 'subm_df': submit_df, 'state_dict_file' : '.. /working/weight_best_kappa.pt', 'batch_size': 32, 'n_TTA': 3, 'img_size': IMG_SIZE, 'img_scale': 1.2, 'use_base_transform': ['crop', 'weighted'], 'transform': transforms.Compose([ transforms.RandomHorizontalFlip() , transforms.RandomVerticalFl...
models = 'SVM' objective = model_objectif(models, X, Y) study_SVM = optuna.create_study(direction='maximize') study_SVM.optimize(objective, n_trials=100 )
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submission = pd.DataFrame( { 'id_code': submit_df.id_code.values, 'diagnosis': enet_subm_preds } ) print(submission.head()) print(submission.diagnosis.value_counts()) submission.to_csv('submission.csv', index=False) print(os.listdir('./'))<set_options>
best_params_SVM, best_score_SVM = parameters(study_SVM )
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%reload_ext autoreload %autoreload 2 %matplotlib inline<import_modules>
models = 'GBC' objective = model_objectif(models, X, Y) study_GBC = optuna.create_study(direction='maximize') study_GBC.optimize(objective, n_trials=100 )
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import fastai from fastai import * from fastai.vision import * from fastai.callbacks import * import cv2 import pandas as pd import matplotlib.pyplot as plt<set_options>
best_params_GBC, best_score_GBC = parameters(study_GBC )
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print('Make sure cudnn is enabled:', torch.backends.cudnn.enabled )<set_options>
models = 'XGBC' objective = model_objectif(models, X, Y) study_XGBC = optuna.create_study(direction='maximize') study_XGBC.optimize(objective, n_trials=100 )
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def seed_everything(seed): random.seed(seed) os.environ['PYTHONHASHSEED'] = str(seed) np.random.seed(seed) torch.manual_seed(seed) torch.cuda.manual_seed(seed) torch.backends.cudnn.deterministic = True SEED = 1667 seed_everything(SEED )<feature_engineering>
best_params_XGBC, best_score_XGBC = parameters(study_XGBC )
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base_image_dir = os.path.join('.. ', 'input/aptos2019-blindness-detection/') train_dir = os.path.join(base_image_dir,'train_images/') df = pd.read_csv(os.path.join(base_image_dir, 'train.csv')) df['path'] = df['id_code'].map(lambda x: os.path.join(train_dir,'{}.png'.format(x))) df = df.drop(columns=['id_code']) df ...
models = 'LGBM' objective = model_objectif(models, X, Y) study_LGBM = optuna.create_study(direction='maximize') study_LGBM.optimize(objective, n_trials=100 )
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tfms = get_transforms(do_flip=True, flip_vert=True, max_rotate=0.10, max_zoom=1.3, max_warp=0.0, max_lighting=0.2) data =( src.transform(tfms,size=128) .databunch(bs=bs) .normalize(imagenet_stats) )<compute_test_metric>
best_params_LGBM, best_score_LGBM = parameters(study_LGBM )
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def quadratic_kappa(y_hat, y): return torch.tensor(cohen_kappa_score(torch.round(y_hat), y, weights='quadratic'),device='cuda:0' )<choose_model_class>
models_tuning = pd.DataFrame({ 'Model': ['Gradient Boosting Classifier', 'Random Forest Classifier', 'Support Vector Machines', 'LightGBM Classifier', 'XGB Classifier'], 'Score Tuning Model': [best_score_GBC, best_score_RFC, best_score_SVM, best_score_LGBM, best_score_XGBC] }) model_all = pd.merge(models_basic, models...
Titanic - Machine Learning from Disaster
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learn = cnn_learner(data, base_arch=models.densenet161 ,metrics=[quadratic_kappa], callback_fns=[partial(EarlyStoppingCallback, monitor='quadratic_kappa', min_delta=0.01, patience=3)], model_dir='/kaggle',pretrained=True) <train_model>
def submit_pred(df, test_data): model_name = df.Model.values[0] if model_name == 'Random Forest Classifier': model = RandomForestClassifier(**best_params_RFC) model.fit(x_train, y_train) y_pred = model.predict(test_data) if model_name == 'Gradient Boosting Classifier': model = GradientBoostingClassifier(**best_param...
Titanic - Machine Learning from Disaster
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learn.fit_one_cycle(5, 2e-2) <find_best_params>
y_pred = submit_pred(model_all, X_test) submission = pd.DataFrame({ "PassengerId": f_test['PassengerId'], "Survived": y_pred } )
Titanic - Machine Learning from Disaster
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learn.unfreeze() learn.lr_find() learn.recorder.plot()<train_model>
submission.to_csv('submission.csv', index=False )
Titanic - Machine Learning from Disaster
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<predict_on_test><EOS>
submission.to_csv('submission.csv', index=False )
Titanic - Machine Learning from Disaster
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<import_modules>
%matplotlib inline for dirname, _, filenames in os.walk('/kaggle/input'): for filename in filenames: print(os.path.join(dirname, filename)) X = pd.read_csv(".. /input/titanic/train.csv") X_test_full = pd.read_csv(".. /input/titanic/test.csv" )
Titanic - Machine Learning from Disaster
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import numpy as np import pandas as pd import os import scipy as sp from functools import partial from sklearn import metrics from collections import Counter import json<compute_test_metric>
print('<<Training set>> ', X.isnull().sum()) print('---------------------------') print('<<Test set>> ', X_test_full.isnull().sum() )
Titanic - Machine Learning from Disaster
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class OptimizedRounder(object): def __init__(self): self.coef_ = 0 def _kappa_loss(self, coef, X, y): X_p = np.copy(X) for i, pred in enumerate(X_p): if pred < coef[0]: X_p[i] = 0 elif pred >= coef[0] and pred < coef[1]: X_p[i] = 1 elif pred >= coef[1] and pred < coef[2]: X_p[i] = 2 elif pred >= coef[2] and pred < coe...
print('Percent of missing "Age" values on training dataset:', '%.2f%%' %(( X['Age'].isnull().sum() /X.shape[0])*100)) print('Percent of missing "Embarked" values on training dataset:', '%.2f%%' %(( X['Embarked'].isnull().sum() /X.shape[0])*100)) print('Percent of missing "Cabin" values on training dataset:', '%.2f%%' %...
Titanic - Machine Learning from Disaster
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optR = OptimizedRounder() optR.fit(valid_preds[0],valid_preds[1] )<load_from_csv>
women = X.loc[X.Sex == 'female']["Survived"] rate_women = sum(women)/len(women) men = X.loc[X.Sex == 'male']["Survived"] rate_men = sum(men)/len(men) print("Rate of women who survived:", "%.5f"% rate_women) print("Rate of men who survived:", "%.5f"% rate_men )
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sample_df = pd.read_csv('.. /input/aptos2019-blindness-detection/sample_submission.csv') sample_df.head()<predict_on_test>
first_class = X.loc[X.Pclass == 1]["Survived"] first_rate = sum(first_class)/len(first_class) second_class = X.loc[X.Pclass == 2]["Survived"] second_rate = sum(second_class)/len(second_class) third_class = X.loc[X.Pclass == 3]["Survived"] third_rate = sum(third_class)/len(third_class) print("Rate of 1st class who su...
Titanic - Machine Learning from Disaster
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learn.data.add_test(ImageList.from_df(sample_df,'.. /input/aptos2019-blindness-detection',folder='test_images',suffix='.png')) <choose_model_class>
sibs = X.loc[X.SibSp == 1]["Survived"] sibs_rate = sum(sibs)/len(sibs) parents = X.loc[X.Parch == 1]["Survived"] parents_rate = sum(parents)/len(parents) print("Rate of survivors with siblings:", "%.5f"% sibs_rate) print("Rate of survivors with parents:", "%.5f"% parents_rate )
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preds,y = learn.TTA(ds_type=DatasetType.Test) <save_to_csv>
df = pd.DataFrame({'title':name[0], 'name':name[2], 'last_name' : name[1], 'survived': X['Survived'], 'sibsp': X['SibSp'], 'parch': X['Parch'], 'age': X['Age'], 'sex': X['Sex']}) df_test = pd.DataFrame({'title':name_test[0], 'name':name_test[2], 'last_name' : name_test[1], 'age': X_test_full['Age'], 'sex':X_test_full[...
Titanic - Machine Learning from Disaster
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test_predictions = optR.predict(preds, coefficients) sample_df.diagnosis = test_predictions.astype(int) sample_df.head() sample_df.to_csv('submission.csv',index=False )<set_options>
df1['last_name'].value_counts()
Titanic - Machine Learning from Disaster
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%matplotlib inline warnings.filterwarnings('always') warnings.filterwarnings('ignore') print(os.listdir(".. /input"))<load_from_csv>
fam = df1["survived"] fam_rate = sum(fam)/len(fam) lonely = df2["survived"] lonely_rate = sum(lonely)/len(lonely) print("Rate of survivors with family onboard:", "%.5f"% fam_rate) print("Rate of survivors without family onboard:", "%.5f"% lonely_rate )
Titanic - Machine Learning from Disaster
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df_train = pd.read_csv('.. /input/aptos2019-blindness-detection/train.csv') df_test = pd.read_csv('.. /input/aptos2019-blindness-detection/test.csv') x_train = df_train['id_code'] y_train = df_train['diagnosis']<import_modules>
X.groupby('Pclass' ).Fare.mean()
Titanic - Machine Learning from Disaster
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import torch import torch.utils.data import torchvision<define_variables>
emb_s = X.loc[X.Embarked == 'S']["Survived"] s_rate = sum(emb_s)/len(emb_s) emb_c = X.loc[X.Embarked == 'C']["Survived"] c_rate = sum(emb_c)/len(emb_c) emb_q = X.loc[X.Embarked == 'Q']["Survived"] q_rate = sum(emb_q)/len(emb_q) print("Rate of survivors that embarked from Southampton:", "%.5f"% s_rate) print("Rate o...
Titanic - Machine Learning from Disaster
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def get_label(diagnosis): return ','.join([str(i)for i in range(diagnosis + 1)] )<feature_engineering>
X['Ticket'].value_counts()
Titanic - Machine Learning from Disaster
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df_train['label'] = df_train.diagnosis.apply(get_label )<set_options>
df.groupby('title' ).age.mean()
Titanic - Machine Learning from Disaster
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df_train.head(10) torch.cuda.manual_seed_all(13 )<normalization>
def replace_titles(x): title = x['title'] if title in ['Don', 'Major', 'Capt', 'Jonkheer', 'Rev', 'Col', 'Sir']: return 'Mr' elif title in ['the Countess', 'Mme', 'Dona', 'Lady']: return 'Mrs' elif title in ['Mlle', 'Ms']: return 'Miss' elif title =='Dr': if x['sex']=='male': return 'Mr' else: return 'Mrs' else: return...
Titanic - Machine Learning from Disaster
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tfms =([RandTransform(tfm=TfmCrop(crop_pad), kwargs={'row_pct':(0.4, 1), 'col_pct':(0.1, 0.9), 'padding_mode': 'reflection'}, p=1.0, resolved={}, do_run=True, is_random=True, use_on_y=True), RandTransform(tfm=TfmPixel(rgb_randomize), kwargs={'channel':2, 'thresh':0.1}, p=0.75, resolved={}, do_run=True, is_random=True, ...
X['Title'] = df['title']
Titanic - Machine Learning from Disaster
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data = ImageDataBunch.from_df('./', df=df_train, valid_pct=0.25, folder=".. /input/aptos2019-blindness-detection/train_images", suffix=".png", ds_tfms=tfms, size=224, bs=156, num_workers=32, label_col='label', label_delim=',' ).normalize(imagenet_stats )<import_modules>
X_test_full.groupby('Pclass' ).Fare.mean()
Titanic - Machine Learning from Disaster
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print(f'Classes: {data.classes}' )<predict_on_test>
X_test_full.loc[X_test_full.Fare.isnull() ]
Titanic - Machine Learning from Disaster
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def get_preds(arr): mask = arr == 0 return np.clip(np.where(mask.any(1), mask.argmax(1), 5)- 1, 0, 4 )<define_variables>
X_test_full.Fare = X_test_full.Fare.fillna(12.46 )
Titanic - Machine Learning from Disaster
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last_output = torch.tensor([ [1.7226, 1.7226, 1.7226, 1.7226, 1.7226], [0, 0, 0, 0, 1.7226], [0.12841, -7.6266, -6.3899, -2.1333, -0.48995], [0.68119, 1.7226, -1.9895, -0.097746, 0.53576] ]) arr =(torch.sigmoid(last_output)> 0.5 ).numpy() ; arr<predict_on_test>
df_test.groupby('title' ).title.count()
Titanic - Machine Learning from Disaster
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assert(get_preds(arr)== np.array([4, 0, 0, 1])).all()<train_model>
df_test.loc[df_test.title.isin(['Col', 'Dona', 'Don', 'Dr', 'Ms', 'Rev'])]
Titanic - Machine Learning from Disaster
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class ConfusionMatrix(Callback): "Computes the confusion matrix." def on_train_begin(self, **kwargs): self.n_classes = 0 def on_epoch_begin(self, **kwargs): self.cm = None def on_batch_end(self, last_output:Tensor, last_target:Tensor, **kwargs): preds = torch.tensor(get_preds(( torch.sigmoid(last_output)> 0.5 ).cpu().n...
df_test.groupby('title' ).age.mean()
Titanic - Machine Learning from Disaster
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class Ranger(Optimizer): def __init__(self, params, lr=1e-2, alpha=0.5, k=8, betas= (.9,0.999), eps=1e-8, weight_decay=0.1): if not 0.0 <= alpha <= 1.0: raise ValueError(f'Invalid slow update rate: {alpha}') if not 1 <= k: raise ValueError(f'Invalid lookahead steps: {k}') if not lr > 0: raise ValueError(f'Invalid Lea...
df_test['title']=df_test.apply(replace_titles, axis=1) print(df_test.groupby('title' ).title.count()) print(df_test.groupby('title' ).age.mean()) print(df_test.groupby('title' ).age.median() )
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kappa = KappaScore(weights="quadratic") learn = cnn_learner(data, models.resnet50, metrics=[kappa, accuracy_thresh], opt_func = optar, callback_fns = [ partial(EarlyStoppingCallback, monitor='kappa_score', min_delta=0.001, patience=3), partial(ReduceLROnPlateauCallback), partial(SaveModelCallback, every = 'improvement...
X_test_full['Title'] = df_test['title']
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lr = min_loss_lr learn.fit_one_cycle(10, lr) torch.cuda.manual_seed_all(18 )<train_model>
def f(row): if row['Age'] <= 16: val = 1 else: val = 0 return val X['Minor'] = X.apply(f, axis=1) X_test_full['Minor'] = X_test_full.apply(f, axis=1) def f(row): if row['Parch'] > 0 and row['Title'] == 'Mrs' and row['Age'] > 18: val = 1 else: val = 0 return val X['Mother'] = X.apply(f, axis=1) X_test_full['Mother'] ...
Titanic - Machine Learning from Disaster
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learn.unfreeze() learn.lr_find lrs = learn.recorder.lrs losses = learn.recorder.losses mg =(np.gradient(np.array(losses)) ).argmin() ml = np.argmin(losses[1:]) min_grad_lr = lrs[mg] print(min_grad_lr) min_loss_lr = lrs[ml]/10 print(min_loss_lr) lr2 = min_loss_lr learn.unfreeze() learn.fit_one_cycle(10, max_lr = lr2 ...
X['Embarked'].fillna(X['Embarked'].value_counts().idxmax() , inplace=True) X['Deck'] = X['Cabin'].apply(lambda s: s[0] if pd.notnull(s)else 'U') X_test_full['Deck'] = X_test_full['Cabin'].apply(lambda s: s[0] if pd.notnull(s)else 'U') X['Deck'].unique() X.drop('Cabin', axis=1, inplace=True) X_test_full.drop('Cabin'...
Titanic - Machine Learning from Disaster
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learn.load('bestordinal' )<train_model>
plt.figure(figsize=(10,5)) plt.title('Training dataset heatmap') X['Title'] = LabelEncoder().fit_transform(X['Title']) X['Embarked'] = X['Embarked'].astype('|S') X['Embarked'] = LabelEncoder().fit_transform(X['Embarked']) X['Deck'] = X['Deck'].astype('|S') X['Deck'] = LabelEncoder().fit_transform(X['Deck']) sns.h...
Titanic - Machine Learning from Disaster
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learn.freeze() learn.fit_one_cycle(15, max_lr=lr2/50,wd=1e-1 )<load_from_csv>
df['age'] = np.where(( df.age.isnull())&(df.title=="Master"),5, np.where(( df.age.isnull())&(df.title=="Miss"),21, np.where(( df.age.isnull())&(df.title=="Mr"),33, np.where(( df.age.isnull())&(df.title=="Mrs"),36, df.age))))
Titanic - Machine Learning from Disaster
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learn.load('bestordinal') sample_df = pd.read_csv('.. /input/aptos2019-blindness-detection/sample_submission.csv') sample_df.head()<define_variables>
df.isnull().sum()
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learn.data.add_test(ImageList.from_df(sample_df,'.. /input/aptos2019-blindness-detection',folder='test_images',suffix='.png'))<predict_on_test>
df[['title', 'survived']].groupby(['title'], as_index=False ).mean()
Titanic - Machine Learning from Disaster
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preds, y = learn.get_preds(DatasetType.Test )<count_values>
X['Age'] = df['age'] X.isnull().sum()
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sample_df.diagnosis = get_preds(( preds > 0.5 ).cpu().numpy()) sample_df.diagnosis.value_counts()<save_to_csv>
X.isnull().sum()
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sample_df.to_csv('submission.csv',index=False )<import_modules>
plt.figure(figsize=(10,5)) plt.title('Test dataset heatmap') X_test_full['Title'] = LabelEncoder().fit_transform(X_test_full['Title']) X_test_full['Embarked'] = X_test_full['Embarked'].astype('|S') X_test_full['Embarked'] = LabelEncoder().fit_transform(X_test_full['Embarked']) X_test_full['Deck'] = X_test_full['Dec...
Titanic - Machine Learning from Disaster
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from fastai import * from fastai.vision import * import numpy as np import scipy as sp from sklearn import metrics import cv2 import PIL<define_variables>
df_test['age'] = np.where(( df_test.age.isnull())&(df_test.title=="Master"),7, np.where(( df_test.age.isnull())&(df_test.title=="Miss"),22, np.where(( df_test.age.isnull())&(df_test.title=="Mr"),32, np.where(( df_test.age.isnull())&(df_test.title=="Mrs"),39, df_test.age))))
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path = Path('/kaggle/input/aptos2019-blindness-detection' )<set_options>
df_test.isnull().sum()
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path.ls()<load_from_csv>
X_test_full['Age'] = df_test['age'].copy() X_test_full.isnull().sum()
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df = pd.read_csv(path/'train.csv' )<count_values>
for df in([X, X_test_full]): df['FamilySize'] = df.SibSp + df.Parch + 1 df['Fare'] = LabelEncoder().fit_transform(df['Fare']) df['Age'] = LabelEncoder().fit_transform(df['Age']) df.drop(['SibSp'], axis=1, inplace=True) df.drop(['Parch'], axis=1, inplace=True) df.drop(['Ticket'], axis=1, inplace=True) df.drop(['Nam...
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df.diagnosis.value_counts()<feature_engineering>
X['Deck_class'] = X['Pclass']*X['Deck'] X_test_full['Deck_class'] = X_test_full['Pclass']*X_test_full['Deck'] X['Emb_class'] = X['Pclass']*X['Embarked'] X_test_full['Emb_class'] = X_test_full['Pclass']*X_test_full['Embarked']
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tfms = get_transforms(do_flip=True, flip_vert=True,max_warp=0., xtra_tfms =[crop_pad() ,symmetric_warp() ] )<normalization>
train_dummies = pd.get_dummies(X, columns=['Sex']) test_dummies = pd.get_dummies(X_test_full, columns=['Sex']) X = train_dummies.copy() X_test_full = test_dummies.copy() for df in([X, X_test_full]): for col in(['Fare', 'Age', 'FamilySize', 'Deck', 'Title', 'Pclass', 'Deck_class', 'Emb_class']): df[col] =(df[col]-df[c...
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data =( src.transform(tfms,size=128) .databunch() .normalize(imagenet_stats) )<compute_test_metric>
y = X.Survived X.drop(['Survived'], axis=1, inplace=True) X_train, X_valid, y_train, y_valid = train_test_split(X, y, train_size=0.7, test_size=0.3, random_state=27 )
Titanic - Machine Learning from Disaster