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4,293,763
dff=dftestefinal.sort_values(by='ConfirmedCases',ascending=False) dff.head(20 )<merge>
train_data = pd.read_csv('.. /input/train.csv') train_data.head()
Titanic - Machine Learning from Disaster
4,293,763
dfm = dfm.melt('Local', var_name='Date', value_name='Fatalities') dfat=pd.merge(dftestefinal,dfm[['Local','Fatalities','Date']],on=['Local','Date'],how='left',suffixes=('_predicted','_real')) dfat['Fatalities_real'].fillna('Vazio',inplace=True) dfat['Fatalities']=np.where(dfat['Fatalities_real']=='Vazio',dfat['Fatali...
test_data = pd.read_csv('.. /input/test.csv') test_data.head()
Titanic - Machine Learning from Disaster
4,293,763
submission=dfat[['ForecastId','ConfirmedCases','Fatalities']] submission['ForecastId']=submission['ForecastId'].astype('int32') submission['Fatalities']=submission['Fatalities'].astype('float') print(submission.dtypes) submission.sample(10) <count_missing_values>
sns.set(style="white", palette="muted", color_codes=True )
Titanic - Machine Learning from Disaster
4,293,763
df_test[df_test['ConfirmedCases'].isna() ]<create_dataframe>
def get_one_hot(array): return np.array(( array['Pclass'] == 1, array['Pclass'] == 2, array['Pclass'] == 3, array['Sex'] == 'male', array['Sex'] == 'female', array['SibSp'], array['Parch'], array['Fare'], array['Embarked'] == 'C', array['Embarked'] == 'Q', array['Embarked'] == 'S')).swapaxes(0, 1 ).astype('float32' )
Titanic - Machine Learning from Disaster
4,293,763
dftpronto=dfat.copy()<save_to_csv>
x_train = train_data[['Pclass', 'Sex', 'Age', 'SibSp', 'Parch', 'Fare', 'Embarked']] x_train.head()
Titanic - Machine Learning from Disaster
4,293,763
submission.to_csv('submission.csv',index=None) submission.sample(10 )<set_options>
x_train = get_one_hot(x_train) x_train[:10]
Titanic - Machine Learning from Disaster
4,293,763
np.random.seed(1337) base_folder = '/kaggle/input/' plt.rcParams['figure.figsize'] = [15, 7] ext_cols = ['LaborForceTotal', 'LaborForcePerCapita', 'DeathRate', 'AirTrafficPassengersTotal', 'AirTrafficPassengersPerCapita', 'HospitalBedDensity', 'Obesity', 'OldPeople', 'PhysiciansDensity', 'AlcoholConsumptionPerCapita',...
y_train = np.array(train_data['Survived']) y_train[:10]
Titanic - Machine Learning from Disaster
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def add_extra_features_from_previous_days(data_fr, tail_size=5): cols_tmp = [] col_prefix = 'PreviousDay' for i in range(0, tail_size): col_cc = '{}-{}ConfirmedCases'.format(col_prefix, i) col_f = '{}-{}Fatalities'.format(col_prefix, i) data_fr[col_cc] = data_fr.groupby(['Country/Region', 'Province/State'])['Confirme...
x_test = get_one_hot(x_test) x_test[:10]
Titanic - Machine Learning from Disaster
4,293,763
TAIL = 50 previous_days_cols = add_extra_features_from_previous_days(df, TAIL) df<feature_engineering>
from mlxtend.classifier import StackingCVClassifier from sklearn.ensemble import GradientBoostingClassifier from sklearn.ensemble import RandomForestClassifier from sklearn.linear_model import LogisticRegression from sklearn.impute import SimpleImputer
Titanic - Machine Learning from Disaster
4,293,763
def special_day_CC(org_df, number_of_cc): print('calculating for every Country & Province days passed from the first day when ConfirmedCases >= {}'.format(number_of_cc)) col_final = 'Day_CC{}'.format(number_of_cc) col = 'Day_CC{}_zero'.format(number_of_cc) org_df[col] = org_df.where( (org_df['ConfirmedCases'] >= numb...
imp = SimpleImputer(missing_values=np.nan, strategy='mean') imp = imp.fit(x_train) x_train_imp = imp.transform(x_train )
Titanic - Machine Learning from Disaster
4,293,763
df_population = pd.read_csv(base_folder + 'worldpopulaton-ver2/all_population.csv', delimiter=';', decimal=',', na_values='N.A.') df_population['Urban Pop'] = df_population['Urban Pop'].fillna(100.0) df_population = pd.get_dummies(df_population, columns=['Continent']) continent_columns = [] for c in df_population.co...
clf1 = RandomForestClassifier() clf2 = GradientBoostingClassifier() lr = LogisticRegression() sclf = StackingCVClassifier(classifiers=[clf1, clf2], meta_classifier=lr )
Titanic - Machine Learning from Disaster
4,293,763
countries_to_replace = [ ('Czech Republic', 'Czechia'), ('United States of America', 'US'), ('Côte d'Ivoire(Ivory Coast)', 'Côte d'Ivoire'), ('Korea(South)', 'Korea, South'), ('Swaziland', 'Eswatini'), ('Myanmar(Burma)', 'Burma'), ('East Timor', 'Timor-Leste'), ('Macedonia', 'North Macedonia'), ('Cape Verde', ...
param_test = {'randomforestclassifier__n_estimators': [10, 120], 'randomforestclassifier__max_depth': [2, 15], 'gradientboostingclassifier__n_estimators': [10, 120], 'gradientboostingclassifier__max_depth': [2, 15], 'gradientboostingclassifier__learning_rate' : [0.01, 0.1], 'meta_classifier__C': [0.1, 10.0]}
Titanic - Machine Learning from Disaster
4,293,763
df_add = pd.DataFrame() for dataset in wbm.keys() : if df_add.shape ==(0, 0): df_add = wbm[dataset].copy() else: df_add = pd.merge(df_add, wbm[dataset], on=['Country', 'State'], how='left') df_add.rename(columns={"Country": "Country/Region", "State": "Province/State"}, inplace=True) df_add<merge>
sclf.fit(x_train_imp, y_train )
Titanic - Machine Learning from Disaster
4,293,763
df_external = pd.merge(df_population, df_add, on=['Country/Region', 'Province/State'], how='left') def fill_missing_percapita_values(dfr, feature_total, feature_percapita): cond =(dfr[feature_percapita].isna())&(df_external[feature_total].notna())&(df_external['Population'].notna()) ind = df_external[cond].index df_e...
x_test_imp = imp.transform(x_test )
Titanic - Machine Learning from Disaster
4,293,763
df_pop = pd.merge(df, df_external, on=['Country/Region', 'Province/State'], how='left') df_pop<define_variables>
data = np.array([np.array(test_data['PassengerId']), sclf.predict(x_test_imp)] ).swapaxes(0, 1) results = pd.DataFrame(data, columns=['PassengerId', 'Survived']) results.set_index('PassengerId', inplace=True) results.head()
Titanic - Machine Learning from Disaster
4,293,763
cond_ctry = [ (( df['Country/Region']=='Germany')&(df['Province/State']=='entire country'), 'blue'), (( df['Country/Region']=='China')&(df['Province/State']=='Hubei'), 'green'), (( df['Country/Region']=='Italy')&(df['Province/State']=='entire country'), 'cyan'), (( df['Country/Region']=='Spain')&(df['Province/State...
results.to_csv('predict.csv' )
Titanic - Machine Learning from Disaster
7,860,554
ccc = pop_cols + ext_cols df_pop[df_pop[ccc].isnull().any(axis=1)][['Country/Region', 'Province/State'] + ccc].drop_duplicates(subset=['Country/Region', 'Province/State']) <feature_engineering>
train_data = pd.read_csv("/kaggle/input/titanic/train.csv") train_data.head()
Titanic - Machine Learning from Disaster
7,860,554
df_pop['ExposedDensity'] =(df_pop['Population'] - np.power(df_pop['ConfirmedCases'], 1.43)) /df_pop['Land Area'] density = df_pop.groupby(['Country/Region', 'Province/State'])['Density'] df_pop['PreviousDay-0ExposedDensity'] = df_pop.groupby(['Country/Region', 'Province/State'])['ExposedDensity'].shift(periods=1, fill_...
test_data = pd.read_csv("/kaggle/input/titanic/test.csv") test_data.head()
Titanic - Machine Learning from Disaster
7,860,554
model_x_columns_without_dummies = add_cols + pop_cols + ext_cols + previous_days_cols + special_cols2 model_x_columns = model_x_columns_without_dummies + continent_columns def train_test_split(X, y, test_size=0.3, random_state=0): day_first = min(X['DayNum']) day_last = max(X['DayNum']) number_of_days_for_train = int...
train_data['IsMale'] = train_data['Sex'].apply(lambda x: 1 if x == 'male' else 0) train_data.head()
Titanic - Machine Learning from Disaster
7,860,554
scaler0 = None scaler1 = None scaler2 = None def scale_data(data): global scaler0, scaler1, scaler2 data_bis = data.copy() daynum = data_bis['DayNum'].copy() memory = dict() for c in special_cols2: memory[c] = data_bis[c].copy() if scaler1: data_bis[model_x_columns_without_dummies] = scaler0.transform(data[model_x_colu...
test_data['IsMale'] = test_data['Sex'].apply(lambda x: 1 if x == 'male' else 0) test_data.head()
Titanic - Machine Learning from Disaster
7,860,554
model_path = join('.') model_file_f = join(model_path, 'nn_model_f.h5') model_file_cc = join(model_path, 'nn_model_cc.h5' )<import_modules>
y = train_data["Survived"] features = ["Pclass", "IsMale", "SibSp", "Parch", "Age", "Fare"] X = train_data[features] X.tail()
Titanic - Machine Learning from Disaster
7,860,554
class Swish(Activation): def __init__(self, activation, **kwargs): super(Swish, self ).__init__(activation, **kwargs) self.__name__ = 'swish' def swish(x, beta = 0.6): return(x * sigmoid(beta * x)) get_custom_objects().update({'swish': Swish(swish)} )<choose_model_class>
X_filled = KNN(k=3 ).fit_transform(X) X_filled[-5:]
Titanic - Machine Learning from Disaster
7,860,554
model_f = Sequential() model_f.add(Dense(50, input_dim=len(model_x_columns)-1, activation='swish')) model_f.add(Dropout(0.2)) model_f.add(Dense(15, activation='elu')) model_f.add(Dropout(0.2)) model_f.add(Dense(1, activation='elu')) opt_f = Adam(learning_rate=0.001, beta_1=0.94, beta_2=0.99, amsgrad=False) model_f.com...
X_filled = pd.DataFrame(data=X_filled,columns=['Pclass','IsMale','SibSp','Parch','Age','Fare']) X_filled.head()
Titanic - Machine Learning from Disaster
7,860,554
model_f = load_model(model_file_f) tr_pred = predict_output(data_X_tr[model_x_columns].drop(columns=['DayNum']), model_f) val_pred = predict_output(data_X_val[model_x_columns].drop(columns=['DayNum']), model_f) test_pred = predict_output(data_X_test[model_x_columns].drop(columns=['DayNum']), model_f) analyse3(data_...
X_train, X_valid, y_train, y_valid = train_test_split(X_filled, y, random_state=1) model = XGBRFClassifier(n_estimators=1000, max_depth=5, random_state=1, learning_rate=0.5) model.fit(X_train, y_train, early_stopping_rounds=5, eval_set=[(X_valid, y_valid)], verbose=False) predictions = model.predict(X_valid) print(...
Titanic - Machine Learning from Disaster
7,860,554
model_cc = Sequential() model_cc.add(Dense(28, input_dim=len(model_x_columns)-1, activation='swish')) model_cc.add(Dropout(0.0)) model_cc.add(Dense(15, activation='elu')) model_cc.add(Dropout(0.0)) model_cc.add(Dense(1, activation='swish')) opt_cc = Adam(learning_rate=0.0001, beta_1=0.988, beta_2=0.99, amsgrad=False) ...
X_test = test_data[features] X_test_filled = KNN(k=3 ).fit_transform(X_test) X_test_filled = pd.DataFrame(data=X_test_filled,columns=['Pclass','IsMale','SibSp','Parch','Age','Fare']) X_test_filled
Titanic - Machine Learning from Disaster
7,860,554
model_cc = load_model(model_file_cc) tr_pred = predict_output(data_X_tr[model_x_columns].drop(columns=['DayNum']), model_cc) val_pred = predict_output(data_X_val[model_x_columns].drop(columns=['DayNum']), model_cc) test_pred = predict_output(data_X_test[model_x_columns].drop(columns=['DayNum']), model_cc) analyse3(...
predictions_final = model.predict(X_test_filled) output = pd.DataFrame({'PassengerId': test_data.PassengerId, 'Survived': predictions_final}) output
Titanic - Machine Learning from Disaster
7,860,554
<merge><EOS>
output.to_csv('my_submission.csv', index=False) print("Your submission was successfully saved!" )
Titanic - Machine Learning from Disaster
8,291,989
<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<merge>
for dirname, _, filenames in os.walk('/kaggle/input'): for filename in filenames: print(os.path.join(dirname, filename)) data = pd.read_csv("/kaggle/input/titanic/train.csv") test=pd.read_csv("/kaggle/input/titanic/test.csv")
Titanic - Machine Learning from Disaster
8,291,989
output_columns = ['ConfirmedCases', 'Fatalities'] tmp_output_columns = ['ConfirmedCases_y', 'Fatalities_y'] last_training_day = df['DayNum'].max() first_test_day = df_test['DayNum'].min() train_test_keys = ['Country/Region', 'Province/State', 'DayNum'] df_test_pop_train = pd.merge(df_test_pop, df_pop[df_pop['DayNum']>=...
name=[] cnt=[] for column in data.columns: name.append(column) cnt.append(data[column].isna().sum()) tmp=pd.DataFrame(cnt,name) print('Count of Na values in dataset') tmp
Titanic - Machine Learning from Disaster
8,291,989
df_test_final = pd.concat([df_pop[df_pop['DayNum']<first_test_day], df_test_pop_train] ).reset_index(drop=True) df_test_final[(df_test_final['Country/Region']=='Poland')&(df_test_final['DayNum']<=last_training_day+1)&(df_test_final['DayNum']>last_training_day-10)]<prepare_output>
name=[] cnt=[] for column in test.columns: name.append(column) cnt.append(test[column].isna().sum()) tmp=pd.DataFrame(cnt,name) print('Count of Na values in dataset') tmp
Titanic - Machine Learning from Disaster
8,291,989
df_test_final['PopulationOrg'] = df_test_final['Population'].copy() df_test_final['Land Area Org'] = df_test_final['Land Area'].copy()<feature_engineering>
data.Age=data.Age.fillna(data.Age.mean()) data.Embarked=data.Embarked.fillna(data.Embarked.mode() [0]) test.Age=test.Age.fillna(test.Age.mean() )
Titanic - Machine Learning from Disaster
8,291,989
model_cc = load_model(model_file_cc) model_f = load_model(model_file_f) last_test_day = df_test['DayNum'].max() for day in range(last_training_day+1, last_test_day+1): print('predicting day {}({} to go)'.format(day, last_test_day-day)) add_extra_features_from_previous_days(df_test_final, TAIL) df_test_final['Previou...
( data.Cabin.isnull().sum() /(data.shape[0])) *100
Titanic - Machine Learning from Disaster
8,291,989
submission_columns = ['ForecastId', 'ConfirmedCases', 'Fatalities'] df_test_final.loc[df_test_final['ForecastId'].isna() , 'ForecastId'] = 0 df_test_final[submission_columns] = df_test_final[submission_columns].astype(int) df_test_final[df_test_final['DayNum']>=first_test_day][submission_columns].to_csv('submission.cs...
data=data.drop(['Cabin'],1) data.sample(3 )
Titanic - Machine Learning from Disaster
8,291,989
warnings.filterwarnings("ignore" )<load_from_csv>
a1=data[(data.Age <= 10)&(data.Survived == 1)].count() [0] a2=data[(( data.Age>10)&(data.Age<=20)) &(data.Survived==1)].count() [0] a3=data[(( data.Age>20)&(data.Age<=30)) &(data.Survived==1)].count() [0] a4=data[(( data.Age>30)&(data.Age<=40)) &(data.Survived==1)].count() [0] a5=data[(( data.Age>40)&(data.Age<=50)) &(...
Titanic - Machine Learning from Disaster
8,291,989
df_train=pd.read_csv(".. /input/covid19-global-forecasting-week-4/train.csv") df_test=pd.read_csv(".. /input/covid19-global-forecasting-week-4/test.csv") df_sub=pd.read_csv(".. /input/covid19-global-forecasting-week-4/submission.csv") print(df_train.shape) print(df_test.shape) print(df_sub.shape )<count_unique_val...
data=data.drop(['Name','Ticket','Fare','Parch'],1) test=test.drop(['Name','Ticket','Fare','Parch','Cabin'],1 )
Titanic - Machine Learning from Disaster
8,291,989
print(f"Unique Countries: {len(df_train.Country_Region.unique())}" )<feature_engineering>
le = LabelEncoder() data['Sex']= le.fit_transform(data['Sex']) data['Embarked']= le.fit_transform(data['Embarked']) test['Sex']= le.fit_transform(test['Sex']) test['Embarked']= le.fit_transform(test['Embarked'])
Titanic - Machine Learning from Disaster
8,291,989
train_dates=list(df_train.Date.unique()) latest_date=df_train.Date.max() print(f"Period : {len(df_train.Date.unique())} days") print(f"From : {df_train.Date.min() } To : {df_train.Date.max() }" )<count_unique_values>
x=data.drop(['Survived'],1) y=data['Survived']
Titanic - Machine Learning from Disaster
8,291,989
print(f"Unique Regions: {df_train.shape[0]/len(df_train.Date.unique())}" )<count_values>
model = RandomForestClassifier(n_estimators=1300, min_samples_leaf=16,bootstrap = True, max_features = 'sqrt') model.fit(x,y) prediction=model.predict(test )
Titanic - Machine Learning from Disaster
8,291,989
df_train.Country_Region.value_counts()<count_missing_values>
sub=pd.read_csv('.. /input/titanic/gender_submission.csv') Yt=sub['Survived'].values
Titanic - Machine Learning from Disaster
8,291,989
print(f"Number of rows without Country_Region : {df_train.Country_Region.isna().sum() }" )<drop_column>
print("Accuaracy:",accuracy_score(Yt, prediction)) print("Precision:", precision_score(Yt, prediction))
Titanic - Machine Learning from Disaster
8,291,989
df_train.drop(labels=["Id","Province_State","Country_Region"], axis=1, inplace=True) df_train<feature_engineering>
testf=pd.read_csv('.. /input/titanic/test.csv' )
Titanic - Machine Learning from Disaster
8,291,989
<filter><EOS>
submission = pd.DataFrame({'PassengerId':testf['PassengerId'],'Survived':prediction}) submission.head() filename = 'Titanic1.csv' submission.to_csv(filename,index=False) print('Saved file: ' + filename )
Titanic - Machine Learning from Disaster
7,780,401
<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<prepare_x_and_y>
%matplotlib inline
Titanic - Machine Learning from Disaster
7,780,401
%%time reg_score_list=[] period=[] reg=[] for n in range(3,10): for region in region_list: df_temp=final_train[final_train.UniqueRegion==region] df_temp=df_temp.tail(n ).reset_index() date=np.arange(1,n+1) model=LinearRegression() X=date.reshape(-1,1) Y=df_temp.Delta model.fit(X,Y) reg.append(region) reg_score_list...
gender_submission = pd.read_csv(".. /input/titanic/gender_submission.csv") test = pd.read_csv(".. /input/titanic/test.csv") train = pd.read_csv(".. /input/titanic/train.csv" )
Titanic - Machine Learning from Disaster
7,780,401
print(f"Unique Countries: {len(df_test.Country_Region.unique())}") test_dates=list(df_test.Date.unique()) size_test=len(df_test.Date.unique()) print(f"Period : {len(df_test.Date.unique())} days") print(f"From : {df_test.Date.min() } To : {df_test.Date.max() }") print(f"Unique Regions: {df_test.shape[0]/len(df_test...
train['FamilySize'] = train['SibSp'] + train['Parch'] test['FamilySize'] = test['SibSp'] + train['Parch']
Titanic - Machine Learning from Disaster
7,780,401
df_test["UniqueRegion"]=df_test.Country_Region df_test.UniqueRegion[df_test.Province_State.isna() ==False]=df_test.Province_State+" , "+df_test.Country_Region<drop_column>
f_file=test['PassengerId'] train=train.drop(['Cabin','PassengerId','Name', 'Ticket', 'SibSp', 'Parch'],axis=1) test=test.drop(['Cabin','PassengerId','Name', 'Ticket', 'SibSp', 'Parch'],axis=1)
Titanic - Machine Learning from Disaster
7,780,401
df_test.drop(labels=["ForecastId","Province_State","Country_Region"], axis=1, inplace=True) df_test["ConfirmedCases"]=0 df_test["Fatalities"]=0 df_test["NewCases"]=0 df_test["Delta"]=0<prepare_x_and_y>
train['Age'].fillna(train['Age'].mean() , inplace=True) train.dropna(inplace=True) test['Age'].fillna(test['Age'].mean() , inplace=True)
Titanic - Machine Learning from Disaster
7,780,401
df_pred=pd.DataFrame(columns=["ConfirmedCases","Fatalities"]) df_traintest=pd.DataFrame(columns=["Date","ConfirmedCases","Fatalities","UniqueRegion","NewCases","Delta"]) for region in region_list: df_temp=final_train[final_train.UniqueRegion==region].reset_index() n=int(best_n_df[best_n_df.Region==region].N.sum()) d...
my_label = LabelEncoder() train['Sex'] = my_label.fit_transform(train['Sex']) train['Embarked'] = my_label.fit_transform(train['Embarked']) test['Sex'] = my_label.fit_transform(test['Sex']) test['Embarked'] = my_label.fit_transform(test['Embarked']) train.head()
Titanic - Machine Learning from Disaster
7,780,401
df_pred=pd.DataFrame(columns=["ConfirmedCases","Fatalities"]) df_traintest=pd.DataFrame(columns=["Date","ConfirmedCases","Fatalities","UniqueRegion","NewCases","Delta"]) for region in region_list: df_temp=final_train[final_train.UniqueRegion==region].reset_index() n=10 NewCasesList=df_temp.tail(n ).NewCases death_rat...
train_X, val_X, train_y, val_y = train_test_split(train.drop(['Survived'], axis=1), train['Survived'] )
Titanic - Machine Learning from Disaster
7,780,401
df_pred=pd.DataFrame(columns=["ConfirmedCases","Fatalities"]) df_traintest=pd.DataFrame(columns=["Date","ConfirmedCases","Fatalities","UniqueRegion","NewCases","Delta"]) for region in region_list: df_temp=final_train[final_train.UniqueRegion==region].reset_index() n=7 ConfirmedCasesList=df_temp.tail(n ).ConfirmedCase...
rf = RandomForestClassifier(random_state=1) rf.fit(train_X, train_y) prediction = rf.predict(val_X) print(mean_absolute_error(val_y, prediction), accuracy_score(val_y, prediction))
Titanic - Machine Learning from Disaster
7,780,401
df_sub.ConfirmedCases=df_pred.ConfirmedCases df_sub.Fatalities=df_pred.Fatalities <load_from_csv>
XGB = XGBClassifier() XGB.fit(train_X, train_y) prediction = XGB.predict(val_X) print(mean_absolute_error(val_y, prediction), accuracy_score(val_y, prediction))
Titanic - Machine Learning from Disaster
7,780,401
train_df = pd.read_csv("/kaggle/input/covid19-global-forecasting-week-4/train.csv") test_df = pd.read_csv("/kaggle/input/covid19-global-forecasting-week-4/test.csv" )<count_missing_values>
test['Fare'].fillna(test['Fare'].mean() , inplace=True )
Titanic - Machine Learning from Disaster
7,780,401
train_df.apply(lambda col: col.isnull().value_counts() , axis=0 )<count_missing_values>
vals = rf.predict(test) file = pd.DataFrame({'PassengerId':f_file, 'Survived':vals}) file.to_csv('submission_rf.csv', index = False) file.head()
Titanic - Machine Learning from Disaster
7,780,401
<data_type_conversions><EOS>
vals = XGB.predict(test) file = pd.DataFrame({'PassengerId':f_file, 'Survived':vals}) file.to_csv('submission_xgb.csv', index = False) file.head()
Titanic - Machine Learning from Disaster
5,103,938
<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<data_type_conversions>
print(os.listdir(".. /input")) %matplotlib inline mpl.rc('axes', labelsize=14) mpl.rc('xtick', labelsize=12) mpl.rc('ytick', labelsize=12) warnings.filterwarnings("ignore" )
Titanic - Machine Learning from Disaster
5,103,938
train_df["Date"] = pd.to_datetime(train_df["Date"]) test_df["Date"] = pd.to_datetime(test_df["Date"] )<feature_engineering>
train=pd.read_csv('.. /input/train.csv' )
Titanic - Machine Learning from Disaster
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train_df["NewCases"] = train_df.groupby(["Country_Region", "Province_State"])["ConfirmedCases"].diff(periods=1) train_df["NewCases"] = train_df["NewCases"].fillna(0) train_df["NewCases"] = np.where(train_df["NewCases"] < 0, 0, train_df["NewCases"]) train_df["NewFatalities"] = train_df.groupby(["Country_Region", "Pro...
test=pd.read_csv('.. /input/test.csv' )
Titanic - Machine Learning from Disaster
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train_df["NewCases"] = np.log(train_df["NewCases"] + 1) train_df["NewFatalities"] = np.log(train_df["NewFatalities"] + 1 )<categorify>
train.isnull().sum()
Titanic - Machine Learning from Disaster
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def preprocess_train(n_prev, n_next): df = train_df.copy() input_feats, output_feats = [], [] for i in range(1, n_prev+1): for feat in ["NewCases", "NewFatalities"]: df["{}_prev_{}".format(feat, i)] = df.groupby(["Country_Region", "Province_State"])[feat].shift(i) input_feats.append("{}_prev_{}".format(feat, i)) outpu...
train.isnull().sum()
Titanic - Machine Learning from Disaster
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def preprocess_test(n_prev): input_feats = [] append_df = pd.concat([train_df, test_df[test_df["Date"] == train_df["Date"].max() + timedelta(days=1)]]) append_df.sort_values(["Country_Region", "Province_State", "Date"], ascending=[True, True, True], inplace=True) for i in range(1, n_prev+1): for feat in ["NewCases", ...
test.isnull().sum()
Titanic - Machine Learning from Disaster
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n_next =(test_df["Date"].max() - train_df["Date"].max() ).days n_next<train_model>
test.isnull().sum()
Titanic - Machine Learning from Disaster
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const_df, time_df, output_df = preprocess_train(n_next, n_next )<split>
train['Survived'].value_counts()
Titanic - Machine Learning from Disaster
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const_test_df, time_test_df = preprocess_test(n_next )<import_modules>
train['Pclass'].value_counts()
Titanic - Machine Learning from Disaster
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from keras.models import Model from keras import layers from keras import Input<choose_model_class>
train[['Pclass', 'Survived']].groupby(['Pclass'], as_index=False ).mean()
Titanic - Machine Learning from Disaster
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time_input = Input(shape=(time_df.shape[1], time_df.shape[2])) lstm = layers.LSTM(32 )(time_input) const_input = Input(shape=(const_df.shape[1],)) combine = layers.concatenate([lstm, const_input], axis=-1) output = layers.Dense(output_df.shape[1], activation='relu' )(combine) model = Model([time_input, const_input],...
train['Sex'].value_counts()
Titanic - Machine Learning from Disaster
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model.fit([time_df, const_df], output_df, epochs=300, batch_size=128 )<predict_on_test>
train[['Sex', 'Survived']].groupby(['Sex'], as_index=False ).mean()
Titanic - Machine Learning from Disaster
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output = model.predict([time_test_df, const_test_df]) output.shape<feature_engineering>
train.groupby('Pclass' ).apply(lambda x:x.groupby('Sex')['Survived'].mean() ).style.background_gradient(cmap='cool' )
Titanic - Machine Learning from Disaster
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sub_test_df = test_df[test_df["Date"] > train_df["Date"].max() ] sub_test_df = pd.concat([sub_test_df, pd.DataFrame(output.reshape(( -1, 2)) , columns=["NewCases", "NewFatalities"], index=sub_test_df.index)], axis=1) sub_test_df["NewCases"] = np.exp(sub_test_df["NewCases"])- 1 sub_test_df["NewFatalities"] = np.exp(sub...
train['Cabin'].nunique()
Titanic - Machine Learning from Disaster
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fixed_test_df = test_df[test_df["Date"] <= train_df["Date"].max() ].merge(train_df[train_df["Date"] >= test_df["Date"].min() ][["Province_State","Country_Region", "Date", "ConfirmedCases", "Fatalities"]], how="left", on=["Province_State","Country_Region", "Date"]) fixed_test_df<concatenate>
train['Ticket'].nunique()
Titanic - Machine Learning from Disaster
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predict_df = pd.concat([sub_test_df, fixed_test_df] ).sort_values(["Country_Region", "Province_State", "Date"], ascending=[True, True, True]) predict_df<feature_engineering>
train['PassengerId'].nunique()
Titanic - Machine Learning from Disaster
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predict_df = predict_df.reset_index() for i in range(len(predict_df)) : if pd.isnull(predict_df.iloc[i]["ConfirmedCases"]): predict_df.loc[i, "ConfirmedCases"] = predict_df.iloc[i - 1]["ConfirmedCases"] + predict_df.iloc[i]["NewCases"] if pd.isnull(predict_df.iloc[i]["Fatalities"]): predict_df.loc[i, "Fatalities"] = pr...
train['Embarked'].value_counts()
Titanic - Machine Learning from Disaster
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predict_df[["ForecastId", "ConfirmedCases", "Fatalities"]].to_csv("submission.csv", index=False )<set_options>
train['Embarked'].fillna('S', inplace=True )
Titanic - Machine Learning from Disaster
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%matplotlib inline<set_options>
train['Embarked'].value_counts()
Titanic - Machine Learning from Disaster
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plt.style.use('default') warnings.filterwarnings('ignore') <load_from_csv>
train['FamilySize'] = train['SibSp'] + train['Parch'] test['FamilySize'] = test['SibSp'] + test['Parch']
Titanic - Machine Learning from Disaster
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train=pd.read_csv('/kaggle/input/covid19-global-forecasting-week-4/train.csv') test=pd.read_csv('/kaggle/input/covid19-global-forecasting-week-4/test.csv') train.head()<data_type_conversions>
from sklearn.preprocessing import LabelEncoder
Titanic - Machine Learning from Disaster
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pd.concat([round(100*train[catcols].isnull().sum() /train.shape[0],2 ).to_frame('train'), round(100*test[catcols].isnull().sum() /test.shape[0],2 ).to_frame('test')],axis=1 )<feature_engineering>
test['Fare'].fillna(test['Fare'].median() , inplace = True) train['FareCategory'] = pd.qcut(train['Fare'], 5) test['FareCategory'] = pd.qcut(test['Fare'], 5 )
Titanic - Machine Learning from Disaster
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print(f'TRAIN -> date_min= {train["Date"].min() } ; date_max= {train["Date"].max() }') print(f'TEST -> date_min= {test["Date"].min() } ; date_max= {test["Date"].max() }' )<count_unique_values>
train['Fare_Code'] = LabelEncoder().fit_transform(train['FareCategory'] )
Titanic - Machine Learning from Disaster
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len(set(train.Date.unique())& set(test.Date.unique()))<data_type_conversions>
test['Fare_Code'] = LabelEncoder().fit_transform(test['FareCategory'] )
Titanic - Machine Learning from Disaster
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def prepare_features(data): data['Province_State']=data['Province_State'].str.lower() data['Country_Region']=data['Country_Region'].str.lower() data['UnkownProvince_State']=data['Province_State'].isnull().astype(int) data.fillna({'Province_State':''},inplace=True) data['Province_State']=data['Province_State'].apply(l...
train['Title'] = 0 for salut in train: train['Title'] = train.Name.str.extract('([A-Za-z]+)\.') test['Title'] = 0 for salut in test: test['Title'] = test.Name.str.extract('([A-Za-z]+)\.' )
Titanic - Machine Learning from Disaster
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train=prepare_features(train) test=prepare_features(test) train.head(3 )<count_unique_values>
mapping = {'Mlle': 'Miss', 'Major': 'Mr', 'Col': 'Mr', 'Sir': 'Mr', 'Don': 'Mr', 'Mme': 'Miss', 'Jonkheer': 'Mr', 'Lady': 'Mrs', 'Capt': 'Mr', 'Countess': 'Mrs', 'Ms': 'Miss', 'Dona': 'Mrs' } train.replace({'Title': mapping}, inplace=True) test.replace({'Title': mapping}, inplace=True )
Titanic - Machine Learning from Disaster
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train['Country_Region'].nunique()<load_from_csv>
data_df = train.append(test) titles = ['Dr', 'Master', 'Miss', 'Mr', 'Mrs', 'Rev'] for title in titles: age_to_impute = data_df.groupby('Title')['Age'].median() [titles.index(title)] data_df.loc[(data_df['Age'].isnull())&(data_df['Title'] == title), 'Age'] = age_to_impute
Titanic - Machine Learning from Disaster
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cols_to_keep=['Country Name','Population ages 0-14, total', 'Population ages 15-64, female','Population ages 15-64, male', 'Population ages 15-64, total','Population ages 65 and above, total', 'Population ages 80 and above, female(% of female population)', 'Population ages 80 and above, male(% of male population)','Pop...
train['Age'] = data_df['Age'][:891] test['Age'] = data_df['Age'][891:]
Titanic - Machine Learning from Disaster
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add_inf['Country Name'].replace({'bahamasthe':'bahamas','bruneidarussalam':'bahamas','czechrepublic':'czechia', 'congodemrep':'congokinshasa','congorep':'congobrazzaville','egyptarabrep':'egypt', 'gambiathe':'gambia','iranislamicrep':'iran','korearep':'koreasouth','unitedstates':'us', 'kyrgyzrepublic':'kyrgyzstan','rus...
plt.style.use('default' )
Titanic - Machine Learning from Disaster
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print('From train:{} ; From add_inf:{} ; intersection:{}'.format(train['Country_Region'].nunique() ,add_inf['Country Name'].nunique() , len(set(train['Country_Region'])& set(add_inf['Country Name'])))) print('From test:{} ; From add_inf:{} ; intersection:{}'.format(test['Country_Region'].nunique() ,add_inf['Country Nam...
train['AgeCategory'] = pd.qcut(train['Age'], 4) test['AgeCategory'] = pd.qcut(test['Age'], 4 )
Titanic - Machine Learning from Disaster
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def scale_popultaion_features(data): data['Population ages 0-14, total'].replace(0,data['Population ages 0-14, total'].mode() ,inplace=True) data['Population ages 15-64, total'].replace(0,data['Population ages 15-64, total'].mode() ,inplace=True) data['Population ages 65 and above, total'].replace(0,data['Population ...
train['Age_Code'] = LabelEncoder().fit_transform(train['AgeCategory']) test['Age_Code'] = LabelEncoder().fit_transform(test['AgeCategory'] )
Titanic - Machine Learning from Disaster
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print('train shape: {} ; test shape: {}'.format(train.shape,test.shape)) train=train.merge(add_inf,left_on='Country_Region',right_on='Country Name',how='left') test=test.merge(add_inf,left_on='Country_Region',right_on='Country Name',how='left') print('train shape: {} ; test shape: {}'.format(train.shape,test.shape)) ...
data_df['Last_Name'] = data_df['Name'].apply(lambda x: str.split(x, ",")[0]) DEFAULT_SURVIVAL_VALUE = 0.5 data_df['Family_Survival'] = DEFAULT_SURVIVAL_VALUE for grp, grp_df in data_df[['Survived','Name', 'Last_Name', 'Fare', 'Ticket', 'PassengerId', 'SibSp', 'Parch', 'Age', 'Cabin']].groupby(['Last_Name', 'Fare']): i...
Titanic - Machine Learning from Disaster
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cols_to_keep=['country', 'total_covid_19_tests', 'total_covid_19_tests_per_million_people', 'inform_risk', 'inform_p2p_hazard_and_exposure_dimension', 'people_using_at_least_basic_sanitation_services', 'inform_vulnerability', 'inform_health_conditions', 'inform_epidemic_vulnerability', 'mortality_rate_under_5', 'preval...
for _, grp_df in data_df.groupby('Ticket'): if(len(grp_df)!= 1): for ind, row in grp_df.iterrows() : if(row['Family_Survival'] == 0)|(row['Family_Survival']== 0.5): smax = grp_df.drop(ind)['Survived'].max() smin = grp_df.drop(ind)['Survived'].min() passID = row['PassengerId'] if(smax == 1.0): data_df.loc[data_df['Passe...
Titanic - Machine Learning from Disaster
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who_data['country'].replace({'capeverde':'caboverde','czechrepublic':'czechia','myanmar':'burma', 'congodemrep':'congokinshasa','congorep':'congobrazzaville','guinea':'guineabissau', 'swaziland':'eswatini','southkorea':'koreasouth','macedonia':'northmacedonia', 'timor':'timorleste','unitedstates':'us','unitedstatesvirg...
train['Sex'].replace(['male','female'],[0,1],inplace=True) test['Sex'].replace(['male','female'],[0,1],inplace=True )
Titanic - Machine Learning from Disaster
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print('From train:{} ; From who-data:{} ; intersection:{}'.format(train['Country_Region'].nunique() ,who_data['country'].nunique() , len(set(train['Country_Region'])& set(who_data['country'])))) print('From test:{} ; From who-data:{} ; intersection:{}'.format(test['Country_Region'].nunique() ,who_data['country'].nuniqu...
drop_elements = ['PassengerId', 'Name', 'SibSp', 'Parch','Ticket', 'Cabin', 'FareCategory', 'AgeCategory','Age', 'Fare', 'Title', 'Embarked']
Titanic - Machine Learning from Disaster
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who_data.select_dtypes(include='number' ).isnull().sum() /who_data.shape[0]<merge>
train = train.drop(drop_elements, axis=1) test = test.drop(drop_elements, axis=1 )
Titanic - Machine Learning from Disaster
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print('train shape: {} ; test shape: {}'.format(train.shape,test.shape)) train=train.merge(who_data,left_on='Country_Region',right_on='country',how='left') test=test.merge(who_data,left_on='Country_Region',right_on='country',how='left') train.fillna(train.quantile (.15 ).to_dict() ,inplace=True) test.fillna(train.qu...
y = train['Survived']
Titanic - Machine Learning from Disaster
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train['Date'] = pd.to_datetime(train['Date'], format = '%Y-%m-%d') test['Date'] = pd.to_datetime(test['Date'], format = '%Y-%m-%d' )<feature_engineering>
X = train[train.columns[1:]]
Titanic - Machine Learning from Disaster
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def create_date_features(df): df['day'] = df['Date'].dt.day df['month'] = df['Date'].dt.month df['dayofweek'] = df['Date'].dt.dayofweek df['dayofyear'] = df['Date'].dt.dayofyear df['weekofyear'] = df['Date'].dt.weekofyear df['Date_day_month'] = df['Date'].dt.strftime("%m%d" ).astype(int) return df train=create_date_fe...
from sklearn.compose import ColumnTransformer from sklearn.pipeline import Pipeline from sklearn.model_selection import train_test_split, GridSearchCV from sklearn.impute import SimpleImputer from sklearn.preprocessing import StandardScaler
Titanic - Machine Learning from Disaster
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train['Province_State']=train['Country_Region']+' '+train['Province_State'] test['Province_State']=test['Country_Region']+' '+test['Province_State'] train['Province_State']=train['Province_State'].str.replace(' ','') test['Province_State']=test['Province_State'].str.replace(' ','') train.drop(columns=['Country Name',...
all_features = ['Pclass', 'Sex', 'FamilySize', 'Fare_Code', 'Age_Code', 'Family_Survival']
Titanic - Machine Learning from Disaster
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train['measures_applied']=(train.Date.dt.strftime('%Y-%m-%d')>=train['entry_date'] ).astype(int) test['measures_applied']=(test.Date.dt.strftime('%Y-%m-%d')>=test['entry_date'] ).astype(int) train.drop(columns=['entry_date'],inplace=True) test.drop(columns=['entry_date'],inplace=True) train.head(3 )<categorify>
all_preprocess = ColumnTransformer( transformers = [ ('allfeatures', all_transformer, all_features), ] )
Titanic - Machine Learning from Disaster
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train=pd.get_dummies(columns=['category','measure','global-school-closures'],data=train) test=pd.get_dummies(columns=['category','measure','global-school-closures'],data=test) train.head(3 )<count_unique_values>
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.2, stratify=train['Survived'] )
Titanic - Machine Learning from Disaster
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s=test.select_dtypes(include='number' ).nunique() binary_features=s[s==2].index.values binary_features<categorify>
from sklearn.linear_model import LogisticRegression from sklearn.ensemble import RandomForestClassifier from sklearn.svm import SVC from sklearn.neighbors import KNeighborsClassifier from sklearn.linear_model import SGDClassifier from sklearn.model_selection import cross_val_score
Titanic - Machine Learning from Disaster
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train.fillna({col:0 for col in binary_features},inplace=True) test.fillna({col:0 for col in binary_features},inplace=True) filling_dict=train.median().to_dict() train.fillna(filling_dict,inplace=True) test.fillna(filling_dict,inplace=True) train.head(2 )<prepare_x_and_y>
classifiers = [ LogisticRegression(random_state=42), RandomForestClassifier(random_state=42), SVC(random_state=42), KNeighborsClassifier() , SGDClassifier(random_state=42), ]
Titanic - Machine Learning from Disaster
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out = pd.DataFrame({'ForecastId': [], 'ConfirmedCases': [], 'Fatalities': []}) for province in tqdm(train['Province_State'].unique()): train_province = train.loc[(train['Province_State'] == province)].copy() y_Conf_true = train_province['ConfirmedCases'] y_Fat_true = train_province['Fatalities'] X_train_prov = train_p...
first_round_scores = {} for classifier in classifiers: pipe = Pipeline(steps=[('preprocessor', all_preprocess), ('classifier', classifier)]) pipe.fit(X_train, y_train) print(classifier) score = pipe.score(X_test, y_test) first_round_scores[classifier.__class__.__name__[:10]] = score print("model score: %.3f" % sco...
Titanic - Machine Learning from Disaster
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out.to_csv('submission.csv',index=False )<set_options>
grid_scores = {} log_clf = Pipeline(steps=[('preprocessor', all_preprocess), ('classifier', LogisticRegression(random_state=42)) ]) log_param_grid = { 'classifier__C': [0.01, 0.1, 1.0, 10], 'classifier__solver' : ['liblinear','lbfgs','sag', 'saga'], 'classifier__max_iter' : [500], } log_grid_search = GridSearchCV(log...
Titanic - Machine Learning from Disaster