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x_train = df_train[train_columns] x_test = df_test[train_columns] y_train = df_train["winPlacePerc"].astype('float' )<set_options>
ship['High_Fare'] = [1 if x > 50 else 0 for x in ship['Fare']] print('High Fare column created.' )
Titanic - Machine Learning from Disaster
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del df_train; del df_test gc.collect()<split>
ship.drop(['Age_was_missing'],axis=1,inplace=True) print('Dropped "Age_was_missing" column from dataset.' )
Titanic - Machine Learning from Disaster
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folds = KFold(n_splits=5,random_state=6) oof_preds = np.zeros(x_train.shape[0]) sub_preds = np.zeros(x_test.shape[0]) start = time.time() valid_score = 0 importances = pd.DataFrame() for n_fold,(trn_idx, val_idx)in enumerate(folds.split(x_train, y_train)) : trn_x, trn_y = x_train.iloc[trn_idx], y_train[trn_idx] val_...
ship.drop(['Age'],axis=1,inplace=True )
Titanic - Machine Learning from Disaster
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test_pred = pd.DataFrame({"Id":test_idx}) test_pred["winPlacePerc"] = sub_preds test_pred.columns = ["Id", "winPlacePerc"] test_pred.to_csv("lgb_base_model.csv", index=False )<set_options>
from sklearn.linear_model import LogisticRegression from sklearn.ensemble import RandomForestClassifier
Titanic - Machine Learning from Disaster
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def is_interactive() : return 'runtime' in get_ipython().config.IPKernelApp.connection_file print('Interactive?', is_interactive()) debug = False use_amp = True<set_options>
df_tr = ship[ship.Survived.notnull() ] df_tr.head()
Titanic - Machine Learning from Disaster
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def seed_everything(seed): random.seed(seed) os.environ['PYTHONHASHSEED'] = str(seed) np.random.seed(seed) torch.manual_seed(seed) torch.cuda.manual_seed(seed) torch.backends.cudnn.deterministic = True seed_everything(21 )<import_modules>
df_te = ship[ship.Survived.isnull() ] df_te.drop(['Survived'], axis=1, inplace=True) df_te = df_te.reset_index(drop=True) df_te.head()
Titanic - Machine Learning from Disaster
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torch.__version__, ignite.__version__<set_options>
x_train = df_tr.drop("Survived",axis=1) y_train = df_tr["Survived"] x_test = df_te.copy() print('Test and Train ML variables are ready.' )
Titanic - Machine Learning from Disaster
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%%time if use_amp: try: except ImportError: !pip install -v --no-cache-dir --global-option="--cpp_ext" --global-option="--cuda_ext".. /input/nvidia-apex/repository/* <normalization>
logreg = LogisticRegression() logreg.fit(x_train, y_train) y_pred = logreg.predict(x_test) logreg.score(x_train, y_train )
Titanic - Machine Learning from Disaster
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class Swish(nn.Module): def forward(self, x): return x * torch.sigmoid(x) class Flatten(nn.Module): def forward(self, x): return x.reshape(x.shape[0], -1 )<define_search_model>
random_forest = RandomForestClassifier(n_estimators=300) random_forest.fit(x_train, y_train) y_pred = random_forest.predict(x_test ).astype(int) random_forest.score(x_train, y_train )
Titanic - Machine Learning from Disaster
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class SqueezeExcitation(nn.Module): def __init__(self, inplanes, se_planes): super(SqueezeExcitation, self ).__init__() self.reduce_expand = nn.Sequential( nn.Conv2d(inplanes, se_planes, kernel_size=1, stride=1, padding=0, bias=True), Swish() , nn.Conv2d(se_planes, inplanes, kernel_size=1, stride=1, padding=0, bias=Tr...
df_test['Survived'] = y_pred.astype(int) df_test.to_csv('SurvivedList.csv') df_test
Titanic - Machine Learning from Disaster
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class MBConv(nn.Module): def __init__(self, inplanes, planes, kernel_size, stride, expand_rate=1.0, se_rate=0.25, drop_connect_rate=0.2): super(MBConv, self ).__init__() expand_planes = int(inplanes * expand_rate) se_planes = max(1, int(inplanes * se_rate)) self.expansion_conv = None if expand_rate > 1.0: self.expansi...
submission = df_test[["PassengerId", "Survived"]]
Titanic - Machine Learning from Disaster
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<choose_model_class><EOS>
submission.to_csv('titanic.csv', index=False, header=['PassengerID', 'Survived'] )
Titanic - Machine Learning from Disaster
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<train_model>
import numpy as np import pandas as pd import seaborn as seaborn from sklearn import preprocessing from sklearn import tree from sklearn.metrics import accuracy_score import matplotlib.pyplot as plt
Titanic - Machine Learning from Disaster
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def print_num_params(model, display_all_modules=False): total_num_params = 0 for n, p in model.named_parameters() : num_params = 1 for s in p.shape: num_params *= s if display_all_modules: print("{}: {}".format(n, num_params)) total_num_params += num_params print("-" * 50) print("Total number of parameters: {:.2e}".fo...
train = pd.read_csv(".. /input/train.csv") test = pd.read_csv(".. /input/test.csv") train.info() test.info()
Titanic - Machine Learning from Disaster
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from torchvision.models.resnet import resnet18, resnet34, resnet50<find_best_params>
def dummies(col,train,test): train_dum = pd.get_dummies(train[col]) test_dum = pd.get_dummies(test[col]) train = pd.concat([train, train_dum], axis=1) test = pd.concat([test,test_dum],axis=1) train.drop(col,axis=1,inplace=True) test.drop(col,axis=1,inplace=True) return train, test dropping = ['PassengerId', 'Name...
Titanic - Machine Learning from Disaster
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print_num_params(resnet18(pretrained=False, num_classes=1000)) print_num_params(resnet34(pretrained=False, num_classes=1000)) print_num_params(resnet50(pretrained=False, num_classes=1000))<load_pretrained>
print(train.Pclass.value_counts()) seaborn.factorplot("Pclass",'Survived',data=train,order=[1,2,3]) train, test = dummies('Pclass',train,test )
Titanic - Machine Learning from Disaster
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model_state = torch.load("/kaggle/input/efficientnet-pytorch/efficientnet-b4-e116e8b3.pth") mapping = { k: v for k, v in zip(model_state.keys() , model.state_dict().keys()) } mapped_model_state = OrderedDict([ (mapping[k], v)for k, v in model_state.items() ]) model.load_state_dict(mapped_model_state, strict=False )...
print(train.Sex.value_counts(dropna=False)) seaborn.factorplot('Sex','Survived',data=train) train,test = dummies('Sex',train,test) train.drop('male',axis=1,inplace=True) test.drop('male',axis=1,inplace=True)
Titanic - Machine Learning from Disaster
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with open("/kaggle/input/efficientnet-pytorch/efficientnet-pytorch/EfficientNet-PyTorch-master/examples/simple/labels_map.txt", "r")as h: labels = json.load(h) img = Image.open("/kaggle/input/efficientnet-pytorch/efficientnet-pytorch/EfficientNet-PyTorch-master/examples/simple/img.jpg") tfms = transforms.Compose([tra...
print(train.Cabin.isnull().sum()) print(test.Cabin.isnull().sum()) train.drop('Cabin',axis=1,inplace=True) test.drop('Cabin',axis=1,inplace=True )
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model.eval() with torch.no_grad() : y_pred = model(x) print('-----') for idx in torch.topk(y_pred, k=5)[1].squeeze(0 ).tolist() : prob = torch.softmax(y_pred, dim=1)[0, idx].item() print('{label:<75}({p:.2f}%)'.format(label=labels[str(idx)], p=prob*100))<import_modules>
def modeling(clf,ft,target): acc = cross_val_score(clf,ft,target,cv=kf) acc_lst.append(acc.mean()) return accuracy = [] def ml(ft,target,time): accuracy.append(acc_lst) logreg = LogisticRegression() modeling(logreg,ft,target) rf = RandomForestClassifier(n_estimators=50,min_samples_split=4,min_samples_leaf=2) model...
Titanic - Machine Learning from Disaster
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from torchvision.transforms import * from torch.utils.data import Subset import torchvision.utils as vutils import pandas as pd from sklearn.utils import shuffle<load_from_csv>
train_ft = train.drop('Survived',axis=1) train_y = train['Survived'] kf = KFold(n_splits=3,random_state=1) acc_lst = [] ml(train_ft,train_y,'test_1')
Titanic - Machine Learning from Disaster
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df_train = pd.read_csv('.. /input/aptos2019-blindness-detection/train.csv') df_test = pd.read_csv('.. /input/aptos2019-blindness-detection/test.csv') x = df_train['id_code'] y = df_train['diagnosis'] x, y = shuffle(x, y) _ = y.hist() n_classes = int(y.max() +1) class_weights = len(y)/ df_train.groupby('diagnosis' )...
train_ft_2=train.drop(['Survived','young'],axis=1) test_2 = test.drop('young',axis=1) train_ft.head() kf = KFold(n_splits=3,random_state=1) acc_lst=[] ml(train_ft_2,train_y,'test_2')
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train_x, valid_x, train_y, valid_y = train_test_split(x.values, y.values, test_size=0.10, stratify=y, random_state=42) test_x = df_test.id_code.values if debug: train_x, train_y = train_x[:128], train_y[:128] valid_x, valid_y = valid_x[:64], valid_y[:64] print(train_x.shape) print(train_y.shape) print(valid_x.shape)...
train_ft_3=train.drop(['Survived','young','C'],axis=1) test_3 = test.drop(['young','C'],axis=1) train_ft.head() kf = KFold(n_splits=3,random_state=1) acc_lst = [] ml(train_ft_3,train_y,'test_3')
Titanic - Machine Learning from Disaster
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class ImageDataset(torch.utils.data.Dataset): def __init__(self, root, path_list, targets=None, transform=None, extension='.png'): super().__init__() self.root = root self.path_list = path_list self.targets = targets self.transform = transform self.extension = extension if targets is not None: assert len(self.path_list...
train_ft_4=train.drop(['Survived','Fare'],axis=1) test_4 = test.drop(['Fare'],axis=1) train_ft.head() kf = KFold(n_splits=3,random_state=1) acc_lst = [] ml(train_ft_4,train_y,'test_4')
Titanic - Machine Learning from Disaster
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train_transform = Compose([ Resize([resolution]*2, BICUBIC), ColorJitter(brightness=0.05, contrast=0.05, saturation=0.01, hue=0), RandomAffine(degrees=15, translate=(0.01, 0.01), scale=(1.0, 1.25), fillcolor=(0,0,0), resample=BICUBIC), RandomHorizontalFlip() , ToTensor() , Normalize(*img_stats) ]) test_transform = Co...
accuracy_df=pd.DataFrame(data=accuracy, index=['test1','test2','test3','test4'], columns=['logistic','rf','svc1','svc2','knn', 'mlp']) accuracy_df
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train_batch_size = 32 eval_batch_size = 16 num_workers = os.cpu_count() print('num_workers:', num_workers) train_loader = DataLoader(train_dataset, batch_size=train_batch_size, num_workers=num_workers, shuffle=True, drop_last=True, pin_memory=True) test_loader = DataLoader(test_dataset, batch_size=eval_batch_size, nu...
svc = SVC() svc.fit(train_ft_4,train_y) svc_pred = svc.predict(test_4) print(svc.score(train_ft_4,train_y)) submission_test = pd.read_csv(".. /input/test.csv") submission = pd.DataFrame({"PassengerId":submission_test['PassengerId'], "Survived":svc_pred}) submission.to_csv("kaggle_SVC.csv",index=False )
Titanic - Machine Learning from Disaster
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model.eval() with torch.no_grad() : y_pred = model.cuda()(batch[0][:1].cuda()) print('-----') for idx in torch.topk(y_pred, k=5)[1].squeeze(0 ).tolist() : prob = torch.softmax(y_pred, dim=1)[0, idx].item() print('{label:<75}({p:.2f}%)'.format(label=labels[str(idx)], p=prob*100))<set_options>
test_data_with_labels = pd.read_csv('.. /input/titanic-test-data/titanic.csv') test_data = pd.read_csv('.. /input/titanic/test.csv' )
Titanic - Machine Learning from Disaster
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del batch torch.cuda.empty_cache() gc.collect()<choose_model_class>
warnings.filterwarnings('ignore' )
Titanic - Machine Learning from Disaster
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model.head[6] = nn.Linear(in_features, n_classes+1) classes =('No DR', 'Mild', 'Moderate', 'Severe', 'Proliferative DR' )<set_options>
for i, name in enumerate(test_data_with_labels['name']): if '"' in name: test_data_with_labels['name'][i] = re.sub('"', '', name) for i, name in enumerate(test_data['Name']): if '"' in name: test_data['Name'][i] = re.sub('"', '', name )
Titanic - Machine Learning from Disaster
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assert torch.cuda.is_available() assert torch.backends.cudnn.enabled, "NVIDIA/Apex:Amp requires cudnn backend to be enabled." torch.backends.cudnn.benchmark = True device = "cuda"<train_model>
survived = [] for name in test_data['Name']: survived.append(int(test_data_with_labels.loc[test_data_with_labels['name'] == name]['survived'].values[-1]))
Titanic - Machine Learning from Disaster
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<compute_train_metric><EOS>
submission = pd.read_csv('.. /input/titanic/gender_submission.csv') submission['Survived'] = survived submission.to_csv('submission.csv', index=False )
Titanic - Machine Learning from Disaster
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<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<compute_test_metric>
df_train = pd.read_csv('.. /input/titanic/train.csv') df_test = pd.read_csv('.. /input/titanic/test.csv') df_sub = pd.read_csv('.. /input/titanic/gender_submission.csv' )
Titanic - Machine Learning from Disaster
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activation = lambda y: y def cont_kappa(input, targets, activation=None): n = len(targets) y = targets.float().unsqueeze(0) pred = input.float().squeeze(-1 ).unsqueeze(0) if activation is not None: pred = activation(pred) wo =(pred - y)**2 we =(pred - y.t())**2 return 1 -(n * wo.sum() / we.sum()) <compute_test_me...
df_train.drop(['Name','Ticket','Cabin'],axis=1,inplace=True) df_test.drop(['Name','Ticket','Cabin'],axis=1,inplace=True) sex = pd.get_dummies(df_train['Sex'],drop_first=True) embark = pd.get_dummies(df_train['Embarked'],drop_first=True) df_train = pd.concat([df_train,sex,embark],axis=1) df_train.drop(['Sex','Embar...
Titanic - Machine Learning from Disaster
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kappa_loss = lambda pred, y: 1 - cont_kappa(pred, y )<compute_test_metric>
import torch import torch.nn as nn from torch.nn import functional as F from torch.autograd import Variable
Titanic - Machine Learning from Disaster
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y = torch.from_numpy(np.random.randint(5, size=6)) preds = torch.ones_like(y.float())* 2 print(y.tolist()) print(preds.tolist()) print(activation(preds ).tolist()) cont_kappa(preds, y), kappa_loss(preds, y), F.mse_loss(preds, y.float() )<compute_train_metric>
class Net(nn.Module): def __init__(self): super(Net, self ).__init__() self.fc1 = nn.Linear(8, 512) self.fc2 = nn.Linear(512, 512) self.fc3 = nn.Linear(512, 2) self.dropout = nn.Dropout(0.2) def forward(self, x): x = F.relu(self.fc1(x)) x = self.dropout(x) x = F.relu(self.fc2(x)) x = self.dropout(x) x = self.fc3(...
Titanic - Machine Learning from Disaster
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class MultiTaskLoss(FocalLoss): def __init__(self, alpha=None, gamma=2.0, second_loss=F.mse_loss, second_mult=0.1): super().__init__(alpha, gamma) self.second_loss = second_loss self.second_mult = second_mult def forward(self, inputs, targets): loss = super().forward(inputs[...,:-1], targets) loss += self.second_mult...
criterion = nn.CrossEntropyLoss()
Titanic - Machine Learning from Disaster
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criterion = MultiTaskLoss(gamma=2., alpha=class_weights, second_loss=kappa_loss, second_mult=0.5) lr = 1e-2 optimizer = optim.SGD([ { "params": chain(model.stem.parameters() , model.blocks.parameters()), "lr": lr * 0.1, }, { "params": model.head[:6].parameters() , "lr": lr * 0.2, }, { "params": model.head[6].parameter...
optimizer = torch.optim.SGD(model.parameters() , lr=0.01 )
Titanic - Machine Learning from Disaster
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if use_amp: model, optimizer = amp.initialize(model, optimizer, opt_level="O2", num_losses=1 )<train_model>
batch_size = 64 n_epochs = 500 batch_no = len(X_train)// batch_size train_loss = 0 train_loss_min = np.Inf for epoch in range(n_epochs): for i in range(batch_no): start = i*batch_size end = start+batch_size x_var = Variable(torch.FloatTensor(X_train[start:end])) y_var = Variable(torch.LongTensor(y_train[start:end])) op...
Titanic - Machine Learning from Disaster
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def update_fn(engine, batch): x = convert_tensor(batch[0], device=device, non_blocking=True) y = convert_tensor(batch[1], device=device, non_blocking=True) model.train() y_pred = model(x) loss = criterion(y_pred, y) optimizer.zero_grad() if use_amp: with amp.scale_loss(loss, optimizer, loss_id=0)as scaled_loss: sca...
X_test = df_test.iloc[:,1:].values X_test_var = Variable(torch.FloatTensor(X_test), requires_grad=False) with torch.no_grad() : test_result = model(X_test_var) values, labels = torch.max(test_result, 1) survived = labels.data.numpy()
Titanic - Machine Learning from Disaster
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torch.cuda.empty_cache() gc.collect() try: batch = next(iter(train_loader)) res = update_fn(engine=None, batch=batch) print(res) finally: print('max_memory_allocated:', torch.cuda.max_memory_allocated()) del batch torch.cuda.empty_cache() _ = gc.collect()<import_modules>
submission = pd.DataFrame({'PassengerId': df_sub['PassengerId'], 'Survived': survived}) submission.to_csv('submission.csv', index=False )
Titanic - Machine Learning from Disaster
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from ignite.engine import Engine, Events, create_supervised_evaluator from ignite.metrics import RunningAverage, Accuracy, Precision, Recall, Loss, TopKCategoricalAccuracy from ignite.contrib.handlers import TensorboardLogger from ignite.contrib.handlers.tensorboard_logger import OutputHandler, OptimizerParamsHandler<c...
train = pd.read_csv('/kaggle/input/titanic/train.csv') test = pd.read_csv('/kaggle/input/titanic/test.csv') train_final = pd.read_csv('/kaggle/input/titanic/train.csv') test_final = pd.read_csv('/kaggle/input/titanic/test.csv' )
Titanic - Machine Learning from Disaster
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def qw_kappa(pred, y): return cohen_kappa_score(torch.argmax(pred[...,:-1], dim=1 ).cpu().numpy() , y.cpu().numpy() , weights='quadratic') def cl_accuracy(pred, y): return accuracy_score(torch.argmax(pred[...,:-1], dim=1 ).cpu().numpy() , y.cpu().numpy()) trainer = Engine(update_fn) metrics = { 'Loss': Loss(criterio...
train = train.drop(columns= ['Name','Ticket','Cabin']) test = test.drop(columns= ['Name','Ticket','Cabin'] )
Titanic - Machine Learning from Disaster
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log_path = "./log" tb_logger = TensorboardLogger(log_dir=log_path) tb_logger.attach(trainer, log_handler=OutputHandler('training', ['batchloss', ]), event_name=Events.ITERATION_COMPLETED )<init_hyperparams>
train['Embarked_S'] =(train['Embarked'] == 'S' ).astype(int) train['Embarked_C'] =(train['Embarked'] == 'C' ).astype(int) train['Embarked_Q'] =(train['Embarked'] == 'Q' ).astype(int) train['Gender'] =(train['Sex'] == 'male' ).astype(int )
Titanic - Machine Learning from Disaster
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weight_decay = 1e-4 cycle_mult = 2 sim_epochs = 31 epoch_size = len(train_loader) lr_sched_params = {'param_name':'lr', 'cycle_size':epoch_size, 'cycle_mult':cycle_mult, 'start_value_mult':0.8, 'end_value_mult':0.25} mom_sched_params = {'param_name':'momentum', 'cycle_size':epoch_size, 'cycle_mult':cycle_mult, 'start_...
test['Embarked_S'] =(test['Embarked'] == 'S' ).astype(int) test['Embarked_C'] =(test['Embarked'] == 'C' ).astype(int) test['Embarked_Q'] =(test['Embarked'] == 'Q' ).astype(int) test['Gender'] =(test['Sex'] == 'male' ).astype(int )
Titanic - Machine Learning from Disaster
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scheduler = ParamGroupScheduler(schedulers=schedulers, names=names) trainer.add_event_handler(Events.ITERATION_STARTED, scheduler )<train_model>
train = train.drop(columns = ['Sex']) test = test.drop(columns = ['Sex'] )
Titanic - Machine Learning from Disaster
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tb_logger.attach(trainer, log_handler=OptimizerParamsHandler(optimizer, "lr"), event_name=Events.EPOCH_STARTED )<set_options>
train = train.drop(columns = ['Embarked']) test = test.drop(columns = ['Embarked'] )
Titanic - Machine Learning from Disaster
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def setup_logger(logger): handler = logging.StreamHandler() formatter = logging.Formatter("%(asctime)s %(name)-12s %(levelname)-8s %(message)s") handler.setFormatter(formatter) logger.addHandler(handler) logger.setLevel(logging.INFO )<choose_model_class>
train.isnull().sum()
Titanic - Machine Learning from Disaster
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trainer.add_event_handler(Events.ITERATION_COMPLETED, TerminateOnNan()) def default_score_fn(engine): score = engine.state.metrics['ClKappa'] return score best_model_handler = ModelCheckpoint(dirname=log_path, filename_prefix="best", n_saved=10, score_name="ClKappa", score_function=default_score_fn, require_empty=Fals...
train.isnull().sum()
Titanic - Machine Learning from Disaster
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@trainer.on(Events.EPOCH_STARTED) def tweak_bn_momenta(engine): epoch = engine.state.epoch if epoch <= 6: momentum = 0.06 / epoch pbar.log_message(f"setting bn momentum to {momentum}") for module in model.modules() : if isinstance(module, nn.modules.batchnorm._BatchNorm): module.momentum = momentum<train_model>
train.fillna(0,inplace=True) test.fillna(0,inplace=True )
Titanic - Machine Learning from Disaster
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num_epochs = 7 if debug else sim_epochs state = trainer.run(train_loader, max_epochs=num_epochs )<find_best_params>
X = train.drop(columns = ['Survived']) y = train['Survived']
Titanic - Machine Learning from Disaster
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evaluator.state.metrics<find_best_params>
scaler = MinMaxScaler() scaled_X = scaler.fit_transform(X )
Titanic - Machine Learning from Disaster
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!ls {log_path} checkpoints = next(os.walk(log_path)) [2] checkpoints = sorted(filter(lambda f: f.endswith(".pth"), checkpoints)) scores = [c.split('=')[-1][:-4] for c in checkpoints] best_epoch = np.argmax(scores) print(best_epoch, scores) if not checkpoints: print('No weight files in {}'.format(log_path)) else: mode...
from sklearn.model_selection import StratifiedKFold from sklearn.svm import SVC
Titanic - Machine Learning from Disaster
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best_model = model best_model.load_state_dict(torch.load(model_path)) best_model = best_model.cuda().eval()<find_best_params>
scores = [] best_svc = SVC(kernel='rbf') cv = StratifiedKFold(n_splits =10, random_state=42, shuffle=True) for train_index, test_index in cv.split(scaled_X, y): print("Train Index: ",train_index) print("Test Index: ",test_index) X_train, X_test, y_train, y_test = scaled_X[train_index], scaled_X[test_index], y[train...
Titanic - Machine Learning from Disaster
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with torch.no_grad() : y_pred = best_model(batch[0][:16].cuda()) print('Regressor activations:') print(activation(y_pred[:16,-1] ).reshape([2,8] ).cpu() , ' ') print('Predictions for first item:') for idx in torch.topk(y_pred[0,:-1], k=n_classes)[1].squeeze(0 ).tolist() : prob = torch.softmax(y_pred, dim=-1)[0, idx...
print("Overall Score: ",np.mean(scores))
Titanic - Machine Learning from Disaster
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del batch<predict_on_test>
scores_alt = cross_val_score(best_svc, scaled_X, y, cv=10) print("Overall Score: ",np.mean(scores_alt))
Titanic - Machine Learning from Disaster
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use_regressor = False def inference_update_with_tta(engine, batch, use_regressor=use_regressor): global preds, targets best_model.eval() with torch.no_grad() : x, y = batch x = x.cuda() if use_regressor: y_pred1 = best_model(x)[...,-1] y_pred2 = best_model(x.flip(dims=(-1,)))[...,-1] curr_pred =(activation(y_pred1)+ ac...
clf = RandomForestClassifier(n_estimators=1000) cbc = CatBoostClassifier(eval_metric = 'Accuracy', random_seed = 42, learning_rate=0.01) xgb = XGBClassifier(n_estimators=1000, learning_rate=0.01, max_depth=3) lgbm = LGBMClassifier(n_estimators=1000, learning_rate=0.01) clf_scores = cross_val_score(clf, scaled_X, y,...
Titanic - Machine Learning from Disaster
9,726,384
preds, targets = [], [] result_state = inferencer.run(eval_train_loader, max_epochs=1) print('valid accuracy:',(np.array(preds)== np.array(targets)).mean() )<predict_on_test>
print("Random Forest: ",np.mean(clf_scores)) print("CatBoost: ",np.mean(cbc_scores)) print("XGBoost: ",np.mean(xgb_scores)) print("LightGBM: ",np.mean(lgbm_scores))
Titanic - Machine Learning from Disaster
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class KappaOptimizer(nn.Module): def __init__(self): super().__init__() self.coef = [0.5, 1.5, 2.5, 3.5] self.func = self.quad_kappa def predict(self, preds): return self._predict(self.coef, preds) @classmethod def _predict(cls, coef, preds): if type(preds ).__name__ == 'Tensor': y_hat = preds.clone().view(-1) else: ...
train_final.fillna(-999,inplace=True) X = train_final.drop(columns = ['Survived']) y = train_final['Survived'] X_train, X_test, y_train, y_test = train_test_split(X, y, train_size=0.85, random_state=1234) features = np.where(X.dtypes!=float)[0] cbc = CatBoostClassifier(eval_metric = 'Accuracy', random_seed = 42, use...
Titanic - Machine Learning from Disaster
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preds, targets = [], [] result_state = inferencer.run(test_loader, max_epochs=1 )<predict_on_test>
pred = cbc.predict(X_test) accuracy_score(y_test, pred )
Titanic - Machine Learning from Disaster
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if use_regressor: preds = kappa_opt.predict(preds ).tolist()<load_from_csv>
test_final.fillna(-999,inplace=True) predictions = cbc.predict(test_final) predictions
Titanic - Machine Learning from Disaster
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submission = pd.DataFrame({'id_code': pd.read_csv('.. /input/aptos2019-blindness-detection/sample_submission.csv' ).id_code.values, 'diagnosis': np.squeeze(preds ).astype(np.int32)}) submission.hist() submission.head()<save_to_csv>
result = pd.DataFrame({'PassengerId':test['PassengerId'],'Survived':predictions} )
Titanic - Machine Learning from Disaster
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submission.to_csv('submission.csv', index=False )<save_to_csv>
result.to_csv("submission.csv", index=False )
Titanic - Machine Learning from Disaster
10,577,883
submission.to_csv('submission.csv', index=False )<set_options>
train_data = pd.read_csv("/kaggle/input/titanic/train.csv") train_data_drop = pd.read_csv("/kaggle/input/titanic/train.csv") train_data['Died'] = 1 - train_data['Survived'] train_data.head()
Titanic - Machine Learning from Disaster
10,577,883
%reload_ext autoreload %autoreload 2 %matplotlib inline %matplotlib inline package_path = '.. /input/efficientnet-pytorch/efficientnet-pytorch/EfficientNet-PyTorch-master' sys.path.append(package_path) <load_pretrained>
test_data = pd.read_csv("/kaggle/input/titanic/test.csv") test_data.head()
Titanic - Machine Learning from Disaster
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md_ef = EfficientNet.from_pretrained('efficientnet-b5', num_classes=1 )<init_hyperparams>
women = train_data.loc[train_data.Sex == 'female']["Survived"] rate_women = sum(women)/len(women) print("% of women survived:", rate_women) men = train_data.loc[train_data.Sex == 'male']["Survived"] rate_men = sum(men)/len(men) print("% of men survived:", rate_men )
Titanic - Machine Learning from Disaster
10,577,883
class ImagePreprocessor(object): def __init__(self, root_dir: str, save_dir: str, img_size: int, tolerance: int = 10, remove_outer_pixels: float = 0.0): if remove_outer_pixels > 0.50: print("ERROR: eroding more than 50% of image") raise InterruptedError self.root_dir = root_dir self.img_size = img_size self.toleranc...
test_data["Fare"] = test_data["Fare"].fillna(test_data["Fare"].median()) train_data['FareGroup'] = pd.cut(train_data['Fare'],4) print(train_data[['FareGroup', 'Survived']].groupby('FareGroup', as_index=False ).mean().sort_values('Survived', ascending=False)) def group_fare(fare): if fare <= 128: return 0 if fare > 12...
Titanic - Machine Learning from Disaster
10,577,883
def get_df() : base_image_dir = os.path.join('.. ', 'input/aptos2019-blindness-detection/') train_dir = os.path.join(base_image_dir,'train_images/') df = pd.read_csv(os.path.join(base_image_dir, 'train.csv')) df['path'] = df['id_code'].map(lambda x: os.path.join(train_dir,'{}.png'.format(x))) df = df.drop(columns=['...
y = train_data["Survived"] features = ["Pclass", "Sex", "SibSp", "Parch", "Age","Embarked","Fare Group"] X = pd.get_dummies(train_data[features]) X_test = pd.get_dummies(test_data[features]) imp = SimpleImputer() imp_X = imp.fit_transform(X) imp_X_test = imp.transform(X_test) model1 = RandomForestClassifier(n_estim...
Titanic - Machine Learning from Disaster
10,577,883
bs = 64 sz = 224 tfms = get_transforms(do_flip=True,flip_vert=True )<compute_test_metric>
model2 = GradientBoostingClassifier(random_state=42) model2.fit(imp_X,y) predictions2 = model2.predict(imp_X_test) model2_preds = cross_val_predict(model2, imp_X, y) model2_acc = accuracy_score(y, model2_preds) print("Gradient Booster Accuracy:", model2_acc )
Titanic - Machine Learning from Disaster
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def qk(y_pred, y): return torch.tensor(cohen_kappa_score(torch.round(y_pred), y, weights='quadratic'), device='cuda:0' )<load_pretrained>
model3 = XGBClassifier(max_depth=3, n_estimators=1000, learning_rate=0.05) model3.fit(imp_X, y) predictions3 = model3.predict(imp_X_test) model3_preds = cross_val_predict(model3, imp_X, y) model3_acc = accuracy_score(y, model3_preds) print("XGBoost Accuracy:", model3_acc )
Titanic - Machine Learning from Disaster
10,577,883
learn = Learner(data, md_ef, metrics = [qk], model_dir="models") learn.data.add_test(ImageList.from_df(test_df, 'test_processed/', folder='', suffix='.png', )) learn.load('abcdef') pass<categorify>
model4 = SVC(random_state = 1) model4.fit(imp_X, y) predictions4 = model4.predict(imp_X_test) model4_preds = cross_val_predict(model4, imp_X, y) model4_acc = accuracy_score(y, model4_preds) print("SVC Accuracy:", model4_acc )
Titanic - Machine Learning from Disaster
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learn.to_fp32() pass<compute_test_metric>
output = pd.DataFrame({'PassengerId': test_data.PassengerId, 'Survived': predictions1}) output.to_csv('my_submission.csv', index=False) print("Your submission was succesfully saved!" )
Titanic - Machine Learning from Disaster
7,824,947
class OptimizedRounder(object): def __init__(self): self.coef_ = 0 def _kappa_loss(self, coef, X, y): X_p = np.copy(X) for i, pred in enumerate(X_p): if pred < coef[0]: X_p[i] = 0 elif pred >= coef[0] and pred < coef[1]: X_p[i] = 1 elif pred >= coef[1] and pred < coef[2]: X_p[i] = 2 elif pred >=coef[2] and pred < coef...
train_data = pd.read_csv("/kaggle/input/titanic/train.csv") train_data.head(10) train_data.tail(10) train_data.query('Cabin == Cabin' ).shape test_data = pd.read_csv("/kaggle/input/titanic/test.csv") test_data.head()
Titanic - Machine Learning from Disaster
7,824,947
learn.dl(DatasetType.Test ).dataset.tfms=[] op = _TTA(learn,ds_type=DatasetType.Test) op_1 = [2*p-4 for p in op]<load_pretrained>
len(train_data.loc[(train_data.Sex == 'female')&(train_data.Survived == 1)]["Survived"]) train_data.loc[:,["Name", "Age", "Pclass"]] train_data[["Name", "Age", "Pclass"]] women = train_data.loc[train_data.Sex == 'female']["Survived"] rate_women = sum(women)/len(women) print("% of women who survived:", rate_women) me...
Titanic - Machine Learning from Disaster
7,824,947
!cp.. /input/l1-aptos/L1.pkl export.pkl learn = load_learner('',test=ImageList.from_df(test_df, 'test_processed/', folder='', suffix='.png', )) learn.dl(DatasetType.Test ).dataset.tfms=[] op_2 = _TTA(learn,ds_type=DatasetType.Test )<feature_engineering>
y = train_data["Survived"] features = ["Pclass", "Sex", "SibSp", "Parch"] X = pd.get_dummies(train_data[features]) X_test = pd.get_dummies(test_data[features]) model = RandomForestClassifier(n_estimators=100, max_depth=5, random_state=1) model.fit(X, y) actual = model.predict(X) predictions = model.predict(X_test)...
Titanic - Machine Learning from Disaster
7,824,947
p = [0] * len(op_1) for i in range(len(op_1)) : p[i] =(op_1[i]+op_2[i])/2<save_to_csv>
y = train_data["Survived"] features = ["Pclass", "Sex", "SibSp", "Parch", "Embarked"] X = pd.get_dummies(train_data[features]) X_test = pd.get_dummies(test_data[features]) X['Age'] = train_data['Age'] X['Fare'] = train_data['Fare'] X['Cabin'] = np.where(train_data['Cabin'].isna() ==True,0,1) X.groupby('Cabin' ).coun...
Titanic - Machine Learning from Disaster
7,824,947
<groupby><EOS>
np.random.seed(7)
Titanic - Machine Learning from Disaster
9,762,575
<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<import_modules>
for dirname, _, filenames in os.walk('/kaggle/input'): for filename in filenames: print(os.path.join(dirname, filename))
Titanic - Machine Learning from Disaster
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import numpy as np import pandas as pd import matplotlib.pyplot as plt import seaborn as sns from sklearn.preprocessing import LabelEncoder from itertools import product from sklearn.feature_extraction.text import TfidfVectorizer import re from xgboost import XGBRegressor from sklearn.ensemble import RandomForestClassi...
train = pd.read_csv(".. /input/titanic/train.csv") test = pd.read_csv(".. /input/titanic/test.csv") data_cleaner = [train, test] train.describe(include="all") sub = test['PassengerId']
Titanic - Machine Learning from Disaster
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train = pd.read_csv(".. /input/competitive-data-science-predict-future-sales/sales_train.csv") test = pd.read_csv(".. /input/competitive-data-science-predict-future-sales/test.csv") item_category = pd.read_csv(".. /input/competitive-data-science-predict-future-sales/item_categories.csv") item = pd.read_csv(".. /inpu...
print(pd.isnull(train ).sum())
Titanic - Machine Learning from Disaster
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<import_modules>
print(pd.isnull(test ).sum())
Titanic - Machine Learning from Disaster
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<choose_model_class>
for data in data_cleaner: print(data.isnull().sum()) print(' ')
Titanic - Machine Learning from Disaster
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<save_to_csv>
age_ref = pd.DataFrame(data=[train.groupby('Pclass')['Age'].mean() ],columns=train['Pclass'].unique()) age_ref
Titanic - Machine Learning from Disaster
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<data_type_conversions>
def fill_age(pclass,age): if pd.isnull(age): return float(age_ref[pclass]) else: return age for data in data_cleaner: data['Age'] = train.apply(lambda x: fill_age(x['Pclass'],x['Age']), axis=1)
Titanic - Machine Learning from Disaster
9,762,575
train['date'] = pd.to_datetime(train['date'],format = '%d.%m.%Y' )<filter>
def fill_fare(fare): if pd.isnull(fare): return train['Fare'].mean() else: return fare def fill_embark(embark): if pd.isnull(embark): return train['Embarked'].mode().iloc[0] else: return embark for data in data_cleaner: data['Fare'] = train.apply(lambda x: fill_fare(x['Fare']), axis=1) data['Embarked'] = train.apply(l...
Titanic - Machine Learning from Disaster
9,762,575
train[train.item_price > 100000]<filter>
for data in data_cleaner: data.drop(['Cabin'],axis=1,inplace=True )
Titanic - Machine Learning from Disaster
9,762,575
train[train.item_price < 0]<filter>
for data in data_cleaner: print(data.isnull().sum()) print(' ' )
Titanic - Machine Learning from Disaster
9,762,575
train[train.item_cnt_day >= 1000]<filter>
title_list = list() for data in data_cleaner: for title in data['Name']: title = title.split('.')[0].split(',')[1] title_list.append(title) data['Title'] = title_list title_list = list()
Titanic - Machine Learning from Disaster
9,762,575
train[train.item_cnt_day < 0]<feature_engineering>
train['Title'] = train['Title'].replace([ ' Don', ' Rev', ' Dr', ' Mme',' Ms', ' Major', ' Lady', ' Sir', ' Mlle', ' Col', ' Capt', ' the Countess', ' Jonkheer'], 'Others') train['Title'].value_counts()
Titanic - Machine Learning from Disaster
9,762,575
shop["city"] = shop.shop_name.str.split(" " ).map(lambda x: x[0]) shop["type"] = shop.shop_name.str.split(" " ).map(lambda x: x[1] )<categorify>
test['Title'] = test['Title'].replace([ ' Don', ' Rev', ' Dr', ' Mme',' Ms', ' Major', ' Lady', ' Sir', ' Mlle', ' Col', ' Capt', ' the Countess', ' Jonkheer',' Dona'], 'Others') test['Title'].value_counts()
Titanic - Machine Learning from Disaster
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shop["shop_type"] = LabelEncoder().fit_transform(shop.type) shop["shop_city"] = LabelEncoder().fit_transform(shop.city) shop.head()<feature_engineering>
def get_size(df): if df['SibSp'] + df['Parch'] + 1 == 1: return 'Single' if df['SibSp'] + df['Parch'] + 1 > 1: return 'Small' if df['SibSp'] + df['Parch'] + 1 > 4: return 'Big' for data in data_cleaner: data['FamilySize'] = data.apply(get_size,axis=1) for data in data_cleaner: data['IsAlone'] = 1 data['IsAlone'].loc[d...
Titanic - Machine Learning from Disaster
9,762,575
item_category['item_type'] = item_category['item_category_name'].str.split('-' ).map(lambda x: x[0]) item_category['item_name'] = item_category['item_category_name'].str.split('-' ).map(lambda x: x[1].strip() if len(x)> 1 else x[0].strip()) item_category.head()<categorify>
sex = pd.get_dummies(train['Sex'],drop_first=True) embark = pd.get_dummies(train['Embarked'],drop_first=True) title = pd.get_dummies(train['Title'],drop_first=True) Pclass = pd.get_dummies(train['Pclass'],drop_first=True) FamilySize = pd.get_dummies(train['FamilySize'],drop_first=True) sex2 = pd.get_dummies(test['...
Titanic - Machine Learning from Disaster
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item_category['item_type_code'] = LabelEncoder().fit_transform(item_category.item_type) item_category['item_name_code'] = LabelEncoder().fit_transform(item_category.item_name) item_category.head()<drop_column>
X = train.drop('Survived',axis=1) y = train['Survived'] x_test = test
Titanic - Machine Learning from Disaster
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item_category = item_category[['item_category_id', 'item_type_code', 'item_name_code']] item_category.head()<string_transform>
warnings.simplefilter("ignore" )
Titanic - Machine Learning from Disaster
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def clean_text(item_name): item_name = item_name.lower() item_name = re.sub(r'[^\w\s]', '', item_name) item_name = re.sub(r'\d+', '', item_name) item_name = re.sub(' +', ' ', item_name) item_name = item_name.strip() return item_name<feature_engineering>
logreg = LogisticRegression(class_weight='balanced') param = {'C':[0.001,0.003,0.005,0.01,0.03,0.05,0.1,0.3,0.5,1,2,3,3,4,5,10,20]} clf = GridSearchCV(logreg,param,scoring='roc_auc',refit=True,cv=10) clf.fit(X,y) print('Best roc_auc: {:.4}, with best C: {}'.format(clf.best_score_, clf.best_params_))
Titanic - Machine Learning from Disaster
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item['clean_item_name'] = item['item_name'].apply(clean_text) item.head()<feature_engineering>
seed = 60 kf = StratifiedKFold(n_splits=5,shuffle=True,random_state=seed) pred_test_full =0 cv_score =[] i=1 for train_index,test_index in kf.split(X,y): print('{} of KFold {}'.format(i,kf.n_splits)) xtr,xvl = X.loc[train_index],X.loc[test_index] ytr,yvl = y.loc[train_index],y.loc[test_index] lr = LogisticRegression(C...
Titanic - Machine Learning from Disaster
9,762,575
item['sub_name1'] = item['clean_item_name'].str.split(' ' ).map(lambda x: x[0]) item['sub_name2'] = item['clean_item_name'].str.split(' ' ).map(lambda x: x[1].strip() if len(x)> 1 else x[0].strip()) item.head()<count_unique_values>
print('Confusion matrix ',confusion_matrix(yvl,lr.predict(xvl))) print('Cv',cv_score,' Mean cv Score',np.mean(cv_score))
Titanic - Machine Learning from Disaster
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<count_unique_values><EOS>
y_pred = pred_test_full/5 submit = pd.DataFrame({'PassengerId':sub,'Survived':y_pred}) submit['Survived'] = submit['Survived'].apply(lambda x: 1 if x>0.5 else 0) submit.to_csv('lr_titanic.csv',index=False) submit
Titanic - Machine Learning from Disaster
9,963,645
<SOS> metric: categorizationaccuracy Kaggle data source: titanic-machine-learning-from-disaster<categorify>
import numpy as np import pandas as pd from sklearn.ensemble import RandomForestClassifier from sklearn.model_selection import GridSearchCV
Titanic - Machine Learning from Disaster
9,963,645
item['sub_name_1'] = LabelEncoder().fit_transform(item.sub_name1) item['sub_name_2'] = LabelEncoder().fit_transform(item.sub_name2) item.head()<concatenate>
df_train = pd.read_csv('/kaggle/input/titanic/train.csv') df_test = pd.read_csv('/kaggle/input/titanic/test.csv') id_train = df_train['PassengerId'] id_test = df_test['PassengerId'] df = pd.concat([df_train, df_test]) df = df.set_index('PassengerId') df.info() df
Titanic - Machine Learning from Disaster
9,963,645
len(set(test.item_id)- set(test.item_id ).intersection(set(train.item_id)) )<data_type_conversions>
def category_to_one_hot(df, name_column): one_hot = pd.get_dummies(df[name_column], prefix=name_column, prefix_sep='-') df = pd.concat([df, one_hot], axis=1) df = df.drop(name_column, axis=1) return df, one_hot def exclude_low_category(df, name_column, threshold_using_category): df_value_counts = df[name_column].val...
Titanic - Machine Learning from Disaster
9,963,645
matrix = [] cols = ['date_block_num','shop_id','item_id'] for i in range(34): sales = train[train.date_block_num==i] matrix.append(np.array(list(product([i], sales.shop_id.unique() , sales.item_id.unique())) , dtype='int16')) matrix = pd.DataFrame(np.vstack(matrix), columns=cols) matrix['date_block_num'] = matrix['dat...
name_column = 'Pclass' print(df[name_column].value_counts(dropna=False)) df, one_hot = category_to_one_hot(df, name_column) one_hot
Titanic - Machine Learning from Disaster