kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def prepare_timestamp_micros(data, schema): """Converts datetime.datetime to int timestamp with microseconds""" if isinstance(data, datetime.datetime): if data.tzinfo is not None: delta = (data - epoch) return int(delta.total_seconds() * MCS_PER_SECOND) t = int(time.mktim...	[ "def", "prepare_timestamp_micros", "(", "data", ",", "schema", ")", ":", "if", "isinstance", "(", "data", ",", "datetime", ".", "datetime", ")", ":", "if", "data", ".", "tzinfo", "is", "not", "None", ":", "delta", "=", "(", "data", "-", "epoch", ")", ...	38.818182	14
def remap_overlapping_column_names(table_op, root_table, data_columns): """Return an ``OrderedDict`` mapping possibly suffixed column names to column names without suffixes. Parameters ---------- table_op : TableNode The ``TableNode`` we're selecting from. root_table : TableNode ...	[ "def", "remap_overlapping_column_names", "(", "table_op", ",", "root_table", ",", "data_columns", ")", ":", "if", "not", "isinstance", "(", "table_op", ",", "ops", ".", "Join", ")", ":", "return", "None", "left_root", ",", "right_root", "=", "ops", ".", "dis...	30.783784	19.351351
def get_section_relations(Section): """Find every relationship between section and the item model.""" all_rels = (Section._meta.get_all_related_objects() + Section._meta.get_all_related_many_to_many_objects()) return filter_item_rels(all_rels)	[ "def", "get_section_relations", "(", "Section", ")", ":", "all_rels", "=", "(", "Section", ".", "_meta", ".", "get_all_related_objects", "(", ")", "+", "Section", ".", "_meta", ".", "get_all_related_many_to_many_objects", "(", ")", ")", "return", "filter_item_rels...	53.4	10.8
def messageReceived(self, value, sender, target): """ An AMP-formatted message was received. Dispatch to the appropriate command responder, i.e. a method on this object exposed with L{commandMethod.expose}. @see IMessageReceiver.messageReceived """ if value.type...	[ "def", "messageReceived", "(", "self", ",", "value", ",", "sender", ",", "target", ")", ":", "if", "value", ".", "type", "!=", "AMP_MESSAGE_TYPE", ":", "raise", "UnknownMessageType", "(", ")", "inputBox", "=", "self", ".", "_boxFromData", "(", "value", "."...	45.56	16.92
def expect_loop(self, searcher, timeout=-1, searchwindowsize=-1): '''This is the common loop used inside expect. The 'searcher' should be an instance of searcher_re or searcher_string, which describes how and what to search for in the input. See expect() for other arguments, return valu...	[ "def", "expect_loop", "(", "self", ",", "searcher", ",", "timeout", "=", "-", "1", ",", "searchwindowsize", "=", "-", "1", ")", ":", "exp", "=", "Expecter", "(", "self", ",", "searcher", ",", "searchwindowsize", ")", "return", "exp", ".", "expect_loop", ...	47.888889	25.888889
def unregister_checker(self, checker): """Unregister a checker instance.""" if checker in self._checkers: self._checkers.remove(checker)	[ "def", "unregister_checker", "(", "self", ",", "checker", ")", ":", "if", "checker", "in", "self", ".", "_checkers", ":", "self", ".", "_checkers", ".", "remove", "(", "checker", ")" ]	40.25	1.75
def delete(cls, session, record, endpoint_override=None, out_type=None): """Delete a record. Args: session (requests.sessions.Session): Authenticated session. record (helpscout.BaseModel): The record to be deleted. endpoint_override (str, optional): Override the defa...	[ "def", "delete", "(", "cls", ",", "session", ",", "record", ",", "endpoint_override", "=", "None", ",", "out_type", "=", "None", ")", ":", "cls", ".", "_check_implements", "(", "'delete'", ")", "return", "cls", "(", "endpoint_override", "or", "'/%s/%s.json'"...	35.68	19.52
def reconfigure_bird(cmd): """Reconfigure BIRD daemon. Arguments: cmd (string): A command to trigger a reconfiguration of Bird daemon Notes: Runs 'birdc configure' to reconfigure BIRD. Some useful information on how birdc tool works: -- Returns a non-zero exit code only...	[ "def", "reconfigure_bird", "(", "cmd", ")", ":", "log", "=", "logging", ".", "getLogger", "(", "PROGRAM_NAME", ")", "cmd", "=", "shlex", ".", "split", "(", "cmd", ")", "log", ".", "info", "(", "\"reconfiguring BIRD by running %s\"", ",", "' '", ".", "join"...	42.574074	21.388889
def __extract_model_summary_value(model, value): """ Extract a model summary field value """ field_value = None if isinstance(value, _precomputed_field): field_value = value.field else: field_value = model._get(value) if isinstance(field_value, float): try: ...	[ "def", "__extract_model_summary_value", "(", "model", ",", "value", ")", ":", "field_value", "=", "None", "if", "isinstance", "(", "value", ",", "_precomputed_field", ")", ":", "field_value", "=", "value", ".", "field", "else", ":", "field_value", "=", "model"...	26.6	11.666667
def is_repository(self, path): """ Check if there is a Repository in path. :Parameters: #. path (string): The real path of the directory where to check if there is a repository. :Returns: #. result (boolean): Whether its a repository or not. """ ...	[ "def", "is_repository", "(", "self", ",", "path", ")", ":", "realPath", "=", "os", ".", "path", ".", "realpath", "(", "os", ".", "path", ".", "expanduser", "(", "path", ")", ")", "if", "not", "os", ".", "path", ".", "isdir", "(", "realPath", ")", ...	32.6875	19.6875
def decompress_G1(z: G1Compressed) -> G1Uncompressed: """ Recovers x and y coordinates from the compressed point. """ # b_flag == 1 indicates the infinity point b_flag = (z % POW_2_383) // POW_2_382 if b_flag == 1: return Z1 x = z % POW_2_381 # Try solving y coordinate from the ...	[ "def", "decompress_G1", "(", "z", ":", "G1Compressed", ")", "->", "G1Uncompressed", ":", "# b_flag == 1 indicates the infinity point", "b_flag", "=", "(", "z", "%", "POW_2_383", ")", "//", "POW_2_382", "if", "b_flag", "==", "1", ":", "return", "Z1", "x", "=", ...	31.304348	15.130435
def iter_bitstream(self, iter_duration_generator): """ iterate over self.iter_trigger() and yield the bits """ assert self.half_sinus == False # Allways trigger full sinus cycle # build min/max Hz values bit_nul_min_hz = self.cfg.BIT_NUL_HZ - self.cfg.HZ_VARIATIO...	[ "def", "iter_bitstream", "(", "self", ",", "iter_duration_generator", ")", ":", "assert", "self", ".", "half_sinus", "==", "False", "# Allways trigger full sinus cycle", "# build min/max Hz values", "bit_nul_min_hz", "=", "self", ".", "cfg", ".", "BIT_NUL_HZ", "-", "s...	38.916667	22
def _dihed_cos_low(a, b, c, deriv): """Similar to dihed_cos, but with relative vectors""" a = Vector3(9, deriv, a, (0, 1, 2)) b = Vector3(9, deriv, b, (3, 4, 5)) c = Vector3(9, deriv, c, (6, 7, 8)) b /= b.norm() tmp = b.copy() tmp = dot(a, b) a -= tmp tmp = b.copy() tmp = dot(c...	[ "def", "_dihed_cos_low", "(", "a", ",", "b", ",", "c", ",", "deriv", ")", ":", "a", "=", "Vector3", "(", "9", ",", "deriv", ",", "a", ",", "(", "0", ",", "1", ",", "2", ")", ")", "b", "=", "Vector3", "(", "9", ",", "deriv", ",", "b", ",",...	26	15.133333
def main(): '''Main routine.''' # validate command line arguments arg_parser = argparse.ArgumentParser() arg_parser.add_argument('--name', '-n', required=True, action='store', help='Name') arg_parser.add_argument('--rgname', '-g', required=True, action='store', help='Res...	[ "def", "main", "(", ")", ":", "# validate command line arguments", "arg_parser", "=", "argparse", ".", "ArgumentParser", "(", ")", "arg_parser", ".", "add_argument", "(", "'--name'", ",", "'-n'", ",", "required", "=", "True", ",", "action", "=", "'store'", ","...	37.9375	23.705357
def get_sample(self, res, resMode='abs', DL=None, method='sum', ind=None, compact=False): """ Return a linear sampling of the LOS The LOS is sampled into a series a points and segments lengths The resolution (segments length) is <= res The sampling can be done accordin...	[ "def", "get_sample", "(", "self", ",", "res", ",", "resMode", "=", "'abs'", ",", "DL", "=", "None", ",", "method", "=", "'sum'", ",", "ind", "=", "None", ",", "compact", "=", "False", ")", ":", "ind", "=", "self", ".", "_check_indch", "(", "ind", ...	43.125	21.443182
def _unfuse(self): """Unfuses the fused RNN in to a stack of rnn cells.""" assert not self._projection_size, "_unfuse does not support projection layer yet!" assert not self._lstm_state_clip_min and not self._lstm_state_clip_max, \ "_unfuse does not support state clipping yet!" ...	[ "def", "_unfuse", "(", "self", ")", ":", "assert", "not", "self", ".", "_projection_size", ",", "\"_unfuse does not support projection layer yet!\"", "assert", "not", "self", ".", "_lstm_state_clip_min", "and", "not", "self", ".", "_lstm_state_clip_max", ",", "\"_unfu...	57.289474	29.421053
def _get_signature_type_and_params(self, request): """Extracts parameters from query, headers and body. Signature type is set to the source in which parameters were found. """ # Per RFC5849, only the Authorization header may contain the 'realm' # optional parameter. heade...	[ "def", "_get_signature_type_and_params", "(", "self", ",", "request", ")", ":", "# Per RFC5849, only the Authorization header may contain the 'realm'", "# optional parameter.", "header_params", "=", "signature", ".", "collect_parameters", "(", "headers", "=", "request", ".", ...	47.853659	22.341463
def mail_sent_content(self, text, part): """ Test an email contains (assert text in) the given text in the relevant message part (accessible as an attribute on the email object). This step strictly applies whitespace. Syntax: I have sent an email with "`text`" in the `part` Example: ...	[ "def", "mail_sent_content", "(", "self", ",", "text", ",", "part", ")", ":", "if", "not", "any", "(", "text", "in", "getattr", "(", "email", ",", "part", ")", "for", "email", "in", "mail", ".", "outbox", ")", ":", "dump_emails", "(", "part", ")", "...	28.428571	23.571429
def generate_code(max_length, max_nest, ops): """Generates code samples. Args: max_length: int. max literal length. max_nest: int. max nesting level. ops: CodeOp. set of allowable operations. Returns: 1. (str) output value. 2. (str) Code operation. """ stack = [] def fetch_one(): ...	[ "def", "generate_code", "(", "max_length", ",", "max_nest", ",", "ops", ")", ":", "stack", "=", "[", "]", "def", "fetch_one", "(", ")", ":", "# Always use an existing nested value for one of the operands.", "if", "stack", ":", "return", "stack", ".", "pop", "(",...	29.25641	17.025641
def _get_metadata(self, key='', default=None, builtin=True): """ get_metadata([key, default, simple]) Retrieve metadata with nested keys separated by dots. This is useful to avoid repeatedly checking if a dict exists, as the frontmatter might not have the keys that we expect. With ``builtin=T...	[ "def", "_get_metadata", "(", "self", ",", "key", "=", "''", ",", "default", "=", "None", ",", "builtin", "=", "True", ")", ":", "# Retrieve metadata", "assert", "isinstance", "(", "key", ",", "str", ")", "meta", "=", "self", ".", "metadata", "# Retrieve ...	35.8	27.15
def encodeMessage(self, events): """Encode a list of Tensor events with protobuf""" message = proto_pb2.Msg( events=[self.encodeEvent(e) for e in events if e._type=='riemann'] ) return message.SerializeToString()	[ "def", "encodeMessage", "(", "self", ",", "events", ")", ":", "message", "=", "proto_pb2", ".", "Msg", "(", "events", "=", "[", "self", ".", "encodeEvent", "(", "e", ")", "for", "e", "in", "events", "if", "e", ".", "_type", "==", "'riemann'", "]", ...	31.375	20.875
def pop(self, count): """Returns new context stack, which doesn't contain few levels """ if len(self._contexts) - 1 < count: _logger.error("#pop value is too big %d", len(self._contexts)) if len(self._contexts) > 1: return ContextStack(self._contexts[:1], ...	[ "def", "pop", "(", "self", ",", "count", ")", ":", "if", "len", "(", "self", ".", "_contexts", ")", "-", "1", "<", "count", ":", "_logger", ".", "error", "(", "\"#pop value is too big %d\"", ",", "len", "(", "self", ".", "_contexts", ")", ")", "if", ...	40.545455	17.909091
def serverUrl(self, value): """gets/sets the server url""" if value.lower() != self._serverUrl.lower(): self._serverUrl = value	[ "def", "serverUrl", "(", "self", ",", "value", ")", ":", "if", "value", ".", "lower", "(", ")", "!=", "self", ".", "_serverUrl", ".", "lower", "(", ")", ":", "self", ".", "_serverUrl", "=", "value" ]	38	7.5
def PauseHunt(hunt_id, reason=None): """Pauses a hunt with a given id.""" hunt_obj = data_store.REL_DB.ReadHuntObject(hunt_id) if hunt_obj.hunt_state != hunt_obj.HuntState.STARTED: raise OnlyStartedHuntCanBePausedError(hunt_obj) data_store.REL_DB.UpdateHuntObject( hunt_id, hunt_state=hunt_obj.HuntSt...	[ "def", "PauseHunt", "(", "hunt_id", ",", "reason", "=", "None", ")", ":", "hunt_obj", "=", "data_store", ".", "REL_DB", ".", "ReadHuntObject", "(", "hunt_id", ")", "if", "hunt_obj", ".", "hunt_state", "!=", "hunt_obj", ".", "HuntState", ".", "STARTED", ":"...	38.583333	19.916667
def _split_sched_block_instance(self, scheduling_block): """Split the scheduling block data into multiple names before adding to the configuration database""" # Initialise empty list _scheduling_block_data = {} _processing_block_data = {} _processing_block_id = [] ...	[ "def", "_split_sched_block_instance", "(", "self", ",", "scheduling_block", ")", ":", "# Initialise empty list", "_scheduling_block_data", "=", "{", "}", "_processing_block_data", "=", "{", "}", "_processing_block_id", "=", "[", "]", "for", "block", "in", "scheduling_...	40.1875	19.0625
def applications(self): """returns all the group applications to join""" url = self._url + "/applications" params = {"f" : "json"} res = self._get(url=url, param_dict=params, proxy_url=self._proxy_url, proxy...	[ "def", "applications", "(", "self", ")", ":", "url", "=", "self", ".", "_url", "+", "\"/applications\"", "params", "=", "{", "\"f\"", ":", "\"json\"", "}", "res", "=", "self", ".", "_get", "(", "url", "=", "url", ",", "param_dict", "=", "params", ","...	43.777778	15.111111
async def _on_progress_notification(self, progress): """Callback function called when a progress notification is received. Args: progress (dict): The received notification containing the progress information """ conn_string = progress.get('connection_string') done =...	[ "async", "def", "_on_progress_notification", "(", "self", ",", "progress", ")", ":", "conn_string", "=", "progress", ".", "get", "(", "'connection_string'", ")", "done", "=", "progress", ".", "get", "(", "'done_count'", ")", "total", "=", "progress", ".", "g...	39.153846	21.153846
def delete_bams(job, bams, patient_id): """ Delete the bams from the job Store once their purpose has been achieved (i.e. after all mutation calling steps). Will also delete the chimeric junction file from Star. :param dict bams: Dict of bam and bai files :param str patient_id: The ID of the patien...	[ "def", "delete_bams", "(", "job", ",", "bams", ",", "patient_id", ")", ":", "bams", "=", "{", "b", ":", "v", "for", "b", ",", "v", "in", "bams", ".", "items", "(", ")", "if", "(", "b", ".", "endswith", "(", "'.bam'", ")", "or", "b", ".", "end...	49.041667	23.541667
def pop( self, args, *kwargs): """ Removes and returns item at specified index (default= ``last``). Supports both ``list`` and ``dict`` semantics for ``pop()``. If passed no argument or an integer argument, it will use ``list`` semantics and pop tokens from the list of parsed t...	[ "def", "pop", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "not", "args", ":", "args", "=", "[", "-", "1", "]", "for", "k", ",", "v", "in", "kwargs", ".", "items", "(", ")", ":", "if", "k", "==", "'default'", ":",...	37.611111	20.981481
def fastMean(img, f=10, inplace=False): ''' for bigger ksizes it if often faster to resize an image rather than blur it... ''' s0,s1 = img.shape[:2] ss0 = int(round(s0/f)) ss1 = int(round(s1/f)) small = cv2.resize(img,(ss1,ss0), interpolation=cv2.INTER_AREA) #bigger ...	[ "def", "fastMean", "(", "img", ",", "f", "=", "10", ",", "inplace", "=", "False", ")", ":", "s0", ",", "s1", "=", "img", ".", "shape", "[", ":", "2", "]", "ss0", "=", "int", "(", "round", "(", "s0", "/", "f", ")", ")", "ss1", "=", "int", ...	28.6	18.333333
def get_ec2_info(instance_id, region, access_key_id, secret_access_key, username): """ queries EC2 for details about a particular instance_id """ conn = connect_to_ec2(region, access_key_id, secret_access_key) instance = conn.get_only_i...	[ "def", "get_ec2_info", "(", "instance_id", ",", "region", ",", "access_key_id", ",", "secret_access_key", ",", "username", ")", ":", "conn", "=", "connect_to_ec2", "(", "region", ",", "access_key_id", ",", "secret_access_key", ")", "instance", "=", "conn", ".", ...	35.333333	16.230769
def get(self, query, parameters, *kwparameters): """Returns the first row returned for the given query.""" rows = self._query(query, parameters, kwparameters) if not rows: return None elif not isinstance(rows, list): raise MySQLError("Query is not a select query...	[ "def", "get", "(", "self", ",", "query", ",", "", "parameters", ",", "", "*", "kwparameters", ")", ":", "rows", "=", "self", ".", "_query", "(", "query", ",", "parameters", ",", "kwparameters", ")", "if", "not", "rows", ":", "return", "None", "elif...	41.909091	16.181818
def present(name, tablespace=None, encoding=None, lc_collate=None, lc_ctype=None, owner=None, owner_recurse=False, template=None, user=None, maintenance_db=None, db_password=None, db_host=...	[ "def", "present", "(", "name", ",", "tablespace", "=", "None", ",", "encoding", "=", "None", ",", "lc_collate", "=", "None", ",", "lc_ctype", "=", "None", ",", "owner", "=", "None", ",", "owner_recurse", "=", "False", ",", "template", "=", "None", ",",...	30.411765	22.735294
async def _retrieve_messages_around_strategy(self, retrieve): """Retrieve messages using around parameter.""" if self.around: around = self.around.id if self.around else None data = await self.logs_from(self.channel.id, retrieve, around=around) self.around = None ...	[ "async", "def", "_retrieve_messages_around_strategy", "(", "self", ",", "retrieve", ")", ":", "if", "self", ".", "around", ":", "around", "=", "self", ".", "around", ".", "id", "if", "self", ".", "around", "else", "None", "data", "=", "await", "self", "....	43.75	18.625
def degree(self, vertex): """ Return the degree of a vertex """ try: return len(self.vertices[vertex]) except KeyError: raise GraphInsertError("Vertex %s doesn't exist." % (vertex,))	[ "def", "degree", "(", "self", ",", "vertex", ")", ":", "try", ":", "return", "len", "(", "self", ".", "vertices", "[", "vertex", "]", ")", "except", "KeyError", ":", "raise", "GraphInsertError", "(", "\"Vertex %s doesn't exist.\"", "%", "(", "vertex", ",",...	30.75	12.25
def word_break(s, word_dict): """ :type s: str :type word_dict: Set[str] :rtype: bool """ dp = [False] * (len(s)+1) dp[0] = True for i in range(1, len(s)+1): for j in range(0, i): if dp[j] and s[j:i] in word_dict: dp[i] = True break ...	[ "def", "word_break", "(", "s", ",", "word_dict", ")", ":", "dp", "=", "[", "False", "]", "*", "(", "len", "(", "s", ")", "+", "1", ")", "dp", "[", "0", "]", "=", "True", "for", "i", "in", "range", "(", "1", ",", "len", "(", "s", ")", "+",...	22.928571	13.071429
def keyReleaseEvent(self, event): """Override Qt method.""" if event.key() == Qt.Key_Alt: self._alt_key_is_down = False self.update()	[ "def", "keyReleaseEvent", "(", "self", ",", "event", ")", ":", "if", "event", ".", "key", "(", ")", "==", "Qt", ".", "Key_Alt", ":", "self", ".", "_alt_key_is_down", "=", "False", "self", ".", "update", "(", ")" ]	33.8	5.2
def generate_type_docs(types): """Parse an object of types and generate RAML documentation for them. Expects each type to be either a regular type or a list/array. If a type is a list, it must specify what type to use for each item. """ output = StringIO() indent = " " # 2 # loop through...	[ "def", "generate_type_docs", "(", "types", ")", ":", "output", "=", "StringIO", "(", ")", "indent", "=", "\" \"", "# 2", "# loop through the basic types and add them to the RAML formatted output", "for", "type_name", "in", "types", ":", "if", "types", "[", "type_name...	35.439024	24.073171
def build_database_sortmerna(fasta_path, max_pos=None, output_dir=None, temp_dir=tempfile.gettempdir(), HALT_EXEC=False): """ Build sortmerna db from fasta_path; return db name and list of fil...	[ "def", "build_database_sortmerna", "(", "fasta_path", ",", "max_pos", "=", "None", ",", "output_dir", "=", "None", ",", "temp_dir", "=", "tempfile", ".", "gettempdir", "(", ")", ",", "HALT_EXEC", "=", "False", ")", ":", "if", "fasta_path", "is", "None", ":...	33.985915	17.464789
def mkconstraints(): """ Make constraint list for binary constraint problem. """ constraints = [] for j in range(1, 10): vars = ["%s%d" % (i, j) for i in uppercase[:9]] constraints.extend((c, const_different) for c in combinations(vars, 2)) for i in uppercase[:9]: vars ...	[ "def", "mkconstraints", "(", ")", ":", "constraints", "=", "[", "]", "for", "j", "in", "range", "(", "1", ",", "10", ")", ":", "vars", "=", "[", "\"%s%d\"", "%", "(", "i", ",", "j", ")", "for", "i", "in", "uppercase", "[", ":", "9", "]", "]",...	33.571429	21.095238
def add_path(self, nodes, attr): """In replacement for Deprecated add_path method""" if nx.__version__[0] == "1": return super().add_path(nodes, attr) else: return nx.add_path(self, nodes, **attr)	[ "def", "add_path", "(", "self", ",", "nodes", ",", "", "", "attr", ")", ":", "if", "nx", ".", "__version__", "[", "0", "]", "==", "\"1\"", ":", "return", "super", "(", ")", ".", "add_path", "(", "nodes", ",", "", "", "attr", ")", "else", ":...	40.5	9.666667
def delete_report(server, report_number, timeout=HQ_DEFAULT_TIMEOUT): """ Delete a specific crash report from the server. :param report_number: Report Number :return: server response """ try: r = requests.post(server + "/reports/delete/%d" % report_number, timeout=timeout) except Exc...	[ "def", "delete_report", "(", "server", ",", "report_number", ",", "timeout", "=", "HQ_DEFAULT_TIMEOUT", ")", ":", "try", ":", "r", "=", "requests", ".", "post", "(", "server", "+", "\"/reports/delete/%d\"", "%", "report_number", ",", "timeout", "=", "timeout",...	29.230769	19.384615
async def set(self, args, *kwargs): """ Set Secret Set the secret associated with some key. If the secret already exists, it is updated instead. This method takes input: ``v1/secret.json#`` This method is ``stable`` """ return await self._makeApiCal...	[ "async", "def", "set", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "return", "await", "self", ".", "_makeApiCall", "(", "self", ".", "funcinfo", "[", "\"set\"", "]", ",", "", "args", ",", "", "", "kwargs", ")" ]	26.769231	23.230769
def _get_style_of_faulting_term(self, C, rup): """ Returns the style-of-faulting scaling term defined in equations 4 to 6 """ if (rup.rake > 30.0) and (rup.rake < 150.): frv = 1.0 fnm = 0.0 elif (rup.rake > -150.0) and (rup.rake < -30.0): fnm =...	[ "def", "_get_style_of_faulting_term", "(", "self", ",", "C", ",", "rup", ")", ":", "if", "(", "rup", ".", "rake", ">", "30.0", ")", "and", "(", "rup", ".", "rake", "<", "150.", ")", ":", "frv", "=", "1.0", "fnm", "=", "0.0", "elif", "(", "rup", ...	28.636364	17
def _thread_loop(self): """Background thread used when Sender is in asynchronous/interval mode.""" last_check_time = time.time() messages = [] while True: # Get first message from queue, blocking until the next time we # should be sending time_since_la...	[ "def", "_thread_loop", "(", "self", ")", ":", "last_check_time", "=", "time", ".", "time", "(", ")", "messages", "=", "[", "]", "while", "True", ":", "# Get first message from queue, blocking until the next time we", "# should be sending", "time_since_last_check", "=", ...	41.382979	16.659574
def _print_SCALAR_TYPES(self, expr, args, *kwargs): """Render scalars""" adjoint = kwargs.get('adjoint', False) if adjoint: expr = expr.conjugate() if isinstance(expr, SympyBasic): self._sympy_printer._print_level = self._print_level + 1 res = self._...	[ "def", "_print_SCALAR_TYPES", "(", "self", ",", "expr", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "adjoint", "=", "kwargs", ".", "get", "(", "'adjoint'", ",", "False", ")", "if", "adjoint", ":", "expr", "=", "expr", ".", "conjugate", "(", ...	41.434783	15.173913
def _cloglog_utility_transform(systematic_utilities, alt_IDs, rows_to_alts, shape_params, intercept_params, intercept_ref_pos=None, *a...	[ "def", "_cloglog_utility_transform", "(", "systematic_utilities", ",", "alt_IDs", ",", "rows_to_alts", ",", "shape_params", ",", "intercept_params", ",", "intercept_ref_pos", "=", "None", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "# Calculate the data dep...	49.946237	21.989247
def get(ctx): """Get build job. Uses [Caching](/references/polyaxon-cli/#caching) Examples: \b ```bash $ polyaxon build -b 1 get ``` \b ```bash $ polyaxon build --build=1 --project=project_name get ``` """ user, project_name, _build = get_build_or_local(ctx.obj.ge...	[ "def", "get", "(", "ctx", ")", ":", "user", ",", "project_name", ",", "_build", "=", "get_build_or_local", "(", "ctx", ".", "obj", ".", "get", "(", "'project'", ")", ",", "ctx", ".", "obj", ".", "get", "(", "'build'", ")", ")", "try", ":", "respons...	28.518519	28.888889
def list_installed_files(self): """ Iterates over the ``installed-files.txt`` entries and returns a tuple ``(path, hash, size)`` for each line. :returns: a list of (path, hash, size) """ def _md5(path): f = open(path, 'rb') try: c...	[ "def", "list_installed_files", "(", "self", ")", ":", "def", "_md5", "(", "path", ")", ":", "f", "=", "open", "(", "path", ",", "'rb'", ")", "try", ":", "content", "=", "f", ".", "read", "(", ")", "finally", ":", "f", ".", "close", "(", ")", "r...	37.432432	16.891892
def get_reference_types(self): """Return the reference types. Zotero.item_types() caches data after the first API call. """ item_types = self._zotero_lib.item_types() return sorted([x["itemType"] for x in item_types])	[ "def", "get_reference_types", "(", "self", ")", ":", "item_types", "=", "self", ".", "_zotero_lib", ".", "item_types", "(", ")", "return", "sorted", "(", "[", "x", "[", "\"itemType\"", "]", "for", "x", "in", "item_types", "]", ")" ]	36	14.714286
def disassemble(self, data, address, architecture_mode=None): """Disassemble the data into an instruction. """ # TODO: Improve this code! if architecture_mode is None: if self._arch_mode is None: architecture_mode = ARCH_ARM_MODE_THUMB else: ...	[ "def", "disassemble", "(", "self", ",", "data", ",", "address", ",", "architecture_mode", "=", "None", ")", ":", "# TODO: Improve this code!", "if", "architecture_mode", "is", "None", ":", "if", "self", ".", "_arch_mode", "is", "None", ":", "architecture_mode", ...	30.833333	17.791667
def setup_default_permissions(session, instance): """Setup default permissions on newly created entities according to. :attr:`Entity.__default_permissions__`. """ if instance not in session.new or not isinstance(instance, Entity): return if not current_app: # working outside app_co...	[ "def", "setup_default_permissions", "(", "session", ",", "instance", ")", ":", "if", "instance", "not", "in", "session", ".", "new", "or", "not", "isinstance", "(", "instance", ",", "Entity", ")", ":", "return", "if", "not", "current_app", ":", "# working ou...	30.384615	19.538462
def field(self, type, field, default=None): '''convenient function for returning an arbitrary MAVLink field with a default''' if not type in self.messages: return default return getattr(self.messages[type], field, default)	[ "def", "field", "(", "self", ",", "type", ",", "field", ",", "default", "=", "None", ")", ":", "if", "not", "type", "in", "self", ".", "messages", ":", "return", "default", "return", "getattr", "(", "self", ".", "messages", "[", "type", "]", ",", "...	44	11.666667
def print_loop(self, sf, sftag, f=sys.stdout, file_format="nmrstar", tw=3): """Print loop into a file or stdout. :param str sf: Saveframe name. :param str sftag: Saveframe tag, i.e. field name. :param io.StringIO f: writable file-like stream. :param str file_format: Format to us...	[ "def", "print_loop", "(", "self", ",", "sf", ",", "sftag", ",", "f", "=", "sys", ".", "stdout", ",", "file_format", "=", "\"nmrstar\"", ",", "tw", "=", "3", ")", ":", "if", "file_format", "==", "\"nmrstar\"", ":", "# First print the fields", "for", "fiel...	48.52	23.6
def on_mouse_event(self, event): '''handle mouse events''' pos = event.GetPosition() if event.RightDown() and self.popup_menu is not None: self.show_popup_menu(pos) return if event.Leaving(): self.mouse_pos = None else: self.mouse_p...	[ "def", "on_mouse_event", "(", "self", ",", "event", ")", ":", "pos", "=", "event", ".", "GetPosition", "(", ")", "if", "event", ".", "RightDown", "(", ")", "and", "self", ".", "popup_menu", "is", "not", "None", ":", "self", ".", "show_popup_menu", "(",...	34.066667	15
def format(self, record): """ The formatting function :param record: The record object :return: The string representation of the record """ try: n = record.n except AttributeError: n = 'default' try: message = record....	[ "def", "format", "(", "self", ",", "record", ")", ":", "try", ":", "n", "=", "record", ".", "n", "except", "AttributeError", ":", "n", "=", "'default'", "try", ":", "message", "=", "record", ".", "message", "except", "AttributeError", ":", "message", "...	24.461538	18
def open(self, **params): """Open telnet connection Args: params (dict), must contain two parameters "ip" - ip address or hostname and "port" - port number Example: params = {'port': 23, 'ip': 'localhost'} """ logger.info('opening telnet') self.p...	[ "def", "open", "(", "self", ",", "", "", "params", ")", ":", "logger", ".", "info", "(", "'opening telnet'", ")", "self", ".", "port", "=", "params", "[", "'port'", "]", "self", ".", "ip", "=", "params", "[", "'ip'", "]", "self", ".", "tn", "="...	28.714286	20.285714
def _pretty_format(self, statement, result): """ Format the return value of a query for humans """ if result is None: return "Success" ret = result if statement.action in ("SELECT", "SCAN"): if statement.save_file: filename = statement.save_file[0]...	[ "def", "_pretty_format", "(", "self", ",", "statement", ",", "result", ")", ":", "if", "result", "is", "None", ":", "return", "\"Success\"", "ret", "=", "result", "if", "statement", ".", "action", "in", "(", "\"SELECT\"", ",", "\"SCAN\"", ")", ":", "if",...	45.105263	13.815789
def load_cufflinks_dict(args, *kwargs): """ Returns dictionary mapping feature identifier (either transcript or gene ID) to a DataFrame row with fields: id : str novel : bool fpkm : float chr : str start : int end : int gene_names : str list """ ...	[ "def", "load_cufflinks_dict", "(", "", "args", ",", "", "", "kwargs", ")", ":", "return", "{", "row", ".", "id", ":", "row", "for", "(", "_", ",", "row", ")", "in", "load_cufflinks_dataframe", "(", "", "args", ",", "", "", "kwargs", ")", ".",...	25.117647	18.529412
def folderitem(self, obj, item, index): """Service triggered each time an item is iterated in folderitems. The use of this service prevents the extra-loops in child objects. :obj: the instance of the class to be foldered :item: dict containing the properties of the object to be used by...	[ "def", "folderitem", "(", "self", ",", "obj", ",", "item", ",", "index", ")", ":", "title", "=", "obj", ".", "Title", "(", ")", "description", "=", "obj", ".", "Description", "(", ")", "url", "=", "obj", ".", "absolute_url", "(", ")", "item", "[", ...	34.657895	18.263158
def save(self, filename, binary=True): """ Writes a rectilinear grid to disk. Parameters ---------- filename : str Filename of grid to be written. The file extension will select the type of writer to use. ".vtk" will use the legacy writer, while ...	[ "def", "save", "(", "self", ",", "filename", ",", "binary", "=", "True", ")", ":", "filename", "=", "os", ".", "path", ".", "abspath", "(", "os", ".", "path", ".", "expanduser", "(", "filename", ")", ")", "# Use legacy writer if vtk is in filename", "if", ...	34.051282	19.641026
def fromimage(im, flatten=False, mode=None): """ Return a copy of a PIL image as a numpy array. Parameters ---------- im : PIL image Input image. flatten : bool If true, convert the output to grey-scale. mode : str, optional Mode to convert image to, e.g. ``'RGB'``. ...	[ "def", "fromimage", "(", "im", ",", "flatten", "=", "False", ",", "mode", "=", "None", ")", ":", "if", "not", "Image", ".", "isImageType", "(", "im", ")", ":", "raise", "TypeError", "(", "\"Input is not a PIL image.\"", ")", "if", "mode", "is", "not", ...	31.705882	20.215686
def cf_to_proj(var): r"""Convert a Variable with projection information to a Proj.4 Projection instance. The attributes of this Variable must conform to the Climate and Forecasting (CF) netCDF conventions. Parameters ---------- var : Variable The projection variable with appropriate at...	[ "def", "cf_to_proj", "(", "var", ")", ":", "import", "pyproj", "kwargs", "=", "{", "'lat_0'", ":", "var", ".", "latitude_of_projection_origin", ",", "'a'", ":", "var", ".", "earth_radius", ",", "'b'", ":", "var", ".", "earth_radius", "}", "if", "var", "....	38.314286	16.942857
def chinese_remainder(n, a): """ Solves CRT for moduli and remainders :param n: :param a: :return: """ sum = 0 prod = reduce(lambda a, b: a * b, n) for n_i, a_i in zip(n, a): p = prod // n_i sum += a_i * DlogFprint.mul_inv(...	[ "def", "chinese_remainder", "(", "n", ",", "a", ")", ":", "sum", "=", "0", "prod", "=", "reduce", "(", "lambda", "a", ",", "b", ":", "a", "*", "b", ",", "n", ")", "for", "n_i", ",", "a_i", "in", "zip", "(", "n", ",", "a", ")", ":", "p", "...	24.571429	14.571429
def get_configurable_by_name(self, name): """ Returns the registered configurable with the specified name or ``None`` if no such configurator exists. """ l = [c for c in self.configurables if c.name == name] if l: return l[0]	[ "def", "get_configurable_by_name", "(", "self", ",", "name", ")", ":", "l", "=", "[", "c", "for", "c", "in", "self", ".", "configurables", "if", "c", ".", "name", "==", "name", "]", "if", "l", ":", "return", "l", "[", "0", "]" ]	34.75	14.75
def unique(lst): """Unique with keeping sort/order ["a", "c", "b", "c", "c", ["d", "e"]] Results in ["a", "c", "b", "d", "e"] """ nl = [] [(nl.append(e) if type(e) is not list else nl.extend(e)) \ for e in lst if e not in nl] return nl	[ "def", "unique", "(", "lst", ")", ":", "nl", "=", "[", "]", "[", "(", "nl", ".", "append", "(", "e", ")", "if", "type", "(", "e", ")", "is", "not", "list", "else", "nl", ".", "extend", "(", "e", ")", ")", "for", "e", "in", "lst", "if", "e...	24.636364	17
async def unsubscribe(self, topic: str): """Unsubscribe from a topic :param topic: required :returns: None Sample ws response .. code-block:: python { "id": "1545910840805", "type": "ack" } """ req_msg...	[ "async", "def", "unsubscribe", "(", "self", ",", "topic", ":", "str", ")", ":", "req_msg", "=", "{", "'type'", ":", "'unsubscribe'", ",", "'topic'", ":", "topic", ",", "'response'", ":", "True", "}", "await", "self", ".", "_conn", ".", "send_message", ...	18	21.12
def get_activity(self, name): """ Retrieve an activity given its name. :param name: The name of the activity. :returns: The activity. """ return [a for a in self.activities if a.name == name][0]	[ "def", "get_activity", "(", "self", ",", "name", ")", ":", "return", "[", "a", "for", "a", "in", "self", ".", "activities", "if", "a", ".", "name", "==", "name", "]", "[", "0", "]" ]	23.6	17.4
def run(self): """ Start monitoring operation policy files. """ self.initialize_tracking_structures() if self.live_monitoring: self.logger.info("Starting up the operation policy file monitor.") while not self.halt_trigger.is_set(): time.sl...	[ "def", "run", "(", "self", ")", ":", "self", ".", "initialize_tracking_structures", "(", ")", "if", "self", ".", "live_monitoring", ":", "self", ".", "logger", ".", "info", "(", "\"Starting up the operation policy file monitor.\"", ")", "while", "not", "self", "...	33.785714	15.642857
def patch_compat(config): """ Support older config values. """ if 'web_host' in config: config['host'] = config.pop('web_host') if 'web_port' in config: config['port'] = config.pop('web_port')	[ "def", "patch_compat", "(", "config", ")", ":", "if", "'web_host'", "in", "config", ":", "config", "[", "'host'", "]", "=", "config", ".", "pop", "(", "'web_host'", ")", "if", "'web_port'", "in", "config", ":", "config", "[", "'port'", "]", "=", "confi...	24.25	7.25
def stationarystate(self, k): """See docs for `Model` abstract base class.""" assert 0 <= k < self.ncats return self._models[k].stationarystate	[ "def", "stationarystate", "(", "self", ",", "k", ")", ":", "assert", "0", "<=", "k", "<", "self", ".", "ncats", "return", "self", ".", "_models", "[", "k", "]", ".", "stationarystate" ]	41	5.75
def main(): """ %prog database.fa query.fa [options] Wrapper for NCBI BLAST+. """ p = OptionParser(main.__doc__) p.add_option("--format", default=" \'6 qseqid sseqid pident length " \ "mismatch gapopen qstart qend sstart send evalue bitscore\' ", help="0-11, learn more ...	[ "def", "main", "(", ")", ":", "p", "=", "OptionParser", "(", "main", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--format\"", ",", "default", "=", "\" \\'6 qseqid sseqid pident length \"", "\"mismatch gapopen qstart qend sstart send evalue bitscore\\' \"", ",",...	33.373494	19.879518
def registerEditor(self, name, op, cls=None, defaultValue=None, flags=0): """ Registers an editor for the given operator as the given name. If no editor class is supplied, ...	[ "def", "registerEditor", "(", "self", ",", "name", ",", "op", ",", "cls", "=", "None", ",", "defaultValue", "=", "None", ",", "flags", "=", "0", ")", ":", "registry", "=", "XEditorRegistry", "(", "op", "=", "op", ",", "cls", "=", "cls", ",", "defau...	41.5	14.5
def _prop_name(self): """ Calculate property name from tag name, e.g. a:schemeClr -> schemeClr. """ if ':' in self._nsptagname: start = self._nsptagname.index(':') + 1 else: start = 0 return self._nsptagname[start:]	[ "def", "_prop_name", "(", "self", ")", ":", "if", "':'", "in", "self", ".", "_nsptagname", ":", "start", "=", "self", ".", "_nsptagname", ".", "index", "(", "':'", ")", "+", "1", "else", ":", "start", "=", "0", "return", "self", ".", "_nsptagname", ...	31	13.222222
def construct_request(self, request_args=None, **kwargs): """ The method where everything is setup for sending the request. The request information is gathered and the where and how of sending the request is decided. :param request_args: Initial request arguments :param ...	[ "def", "construct_request", "(", "self", ",", "request_args", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "request_args", "is", "None", ":", "request_args", "=", "{", "}", "# remove arguments that should not be included in the request", "# _args = dict(", ...	39.842105	21.105263
def refresh_all_state_machines(self): """ Refreshes all state machine tabs """ self.refresh_state_machines(list(self.model.state_machine_manager.state_machines.keys()))	[ "def", "refresh_all_state_machines", "(", "self", ")", ":", "self", ".", "refresh_state_machines", "(", "list", "(", "self", ".", "model", ".", "state_machine_manager", ".", "state_machines", ".", "keys", "(", ")", ")", ")" ]	47.25	15
def threadpooled( func: None = None, *, loop_getter: typing.Union[None, typing.Callable[..., asyncio.AbstractEventLoop], asyncio.AbstractEventLoop] = None, loop_getter_need_context: bool = False, ) -> ThreadPooled: """Overload: No function."""	[ "def", "threadpooled", "(", "func", ":", "None", "=", "None", ",", "*", ",", "loop_getter", ":", "typing", ".", "Union", "[", "None", ",", "typing", ".", "Callable", "[", "...", ",", "asyncio", ".", "AbstractEventLoop", "]", ",", "asyncio", ".", "Abstr...	36.714286	25.571429
def register_parameters(self, *parameters): """ Register parameters. """ for param in parameters: self.parameter_count += np.prod(param.get_value().shape) self.parameters.extend(parameters)	[ "def", "register_parameters", "(", "self", ",", "*", "parameters", ")", ":", "for", "param", "in", "parameters", ":", "self", ".", "parameter_count", "+=", "np", ".", "prod", "(", "param", ".", "get_value", "(", ")", ".", "shape", ")", "self", ".", "pa...	33.571429	7.571429
def cache(self, CachableItem): """Updates cache area with latest information """ _cachedItem = self.get(CachableItem) if not _cachedItem: _dirtyCachedItem = self.mapper.get(CachableItem) logger.debug("new cachable item added to sql cache area {id: %s, type: %s}", ...	[ "def", "cache", "(", "self", ",", "CachableItem", ")", ":", "_cachedItem", "=", "self", ".", "get", "(", "CachableItem", ")", "if", "not", "_cachedItem", ":", "_dirtyCachedItem", "=", "self", ".", "mapper", ".", "get", "(", "CachableItem", ")", "logger", ...	54.333333	24.777778
def disassemble(self, lineno_width=3, mark_as_current=False, asm_format=False, show_bytes=False): """Format instruction details for inclusion in disassembly output lineno_width sets the width of the line number field (0 omits it) *ma...	[ "def", "disassemble", "(", "self", ",", "lineno_width", "=", "3", ",", "mark_as_current", "=", "False", ",", "asm_format", "=", "False", ",", "show_bytes", "=", "False", ")", ":", "fields", "=", "[", "]", "if", "asm_format", ":", "indexed_operand", "=", ...	38.543478	13.021739
def main_hrun(): """ parse command line options and run commands.""" parser = argparse.ArgumentParser(description="Tools for http(s) test. Base on rtsf.") parser.add_argument( '--log-level', default='INFO', help="Specify logging level, default is INFO.") p...	[ "def", "main_hrun", "(", ")", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", "description", "=", "\"Tools for http(s) test. Base on rtsf.\"", ")", "parser", ".", "add_argument", "(", "'--log-level'", ",", "default", "=", "'INFO'", ",", "help", "=", ...	33.75	19.833333
def contents(self): """Get svg string """ c = self._header[:] c.append(' font-weight="{}"'.format(self.font_weight)) c.append(' font-family="{}"'.format(self.font_family)) c.append(' width="{}" height="{}"'.format(self.screen_size)) sclw = self.original_size[0] ...	[ "def", "contents", "(", "self", ")", ":", "c", "=", "self", ".", "_header", "[", ":", "]", "c", ".", "append", "(", "' font-weight=\"{}\"'", ".", "format", "(", "self", ".", "font_weight", ")", ")", "c", ".", "append", "(", "' font-family=\"{}\"'", "."...	45.772727	15.227273
def from_directory_as_inmemory_db(cls, gtfs_directory): """ Instantiate a GTFS object by computing Parameters ---------- gtfs_directory: str path to the directory for importing the database """ # this import is here to avoid circular imports (which tu...	[ "def", "from_directory_as_inmemory_db", "(", "cls", ",", "gtfs_directory", ")", ":", "# this import is here to avoid circular imports (which turned out to be a problem)", "from", "gtfspy", ".", "import_gtfs", "import", "import_gtfs", "conn", "=", "sqlite3", ".", "connect", "(...	35.176471	14.235294
def p_new_expr_nobf(self, p): """new_expr_nobf : member_expr_nobf \| NEW new_expr """ if len(p) == 2: p[0] = p[1] else: p[0] = self.asttypes.NewExpr(p[2]) p[0].setpos(p)	[ "def", "p_new_expr_nobf", "(", "self", ",", "p", ")", ":", "if", "len", "(", "p", ")", "==", "2", ":", "p", "[", "0", "]", "=", "p", "[", "1", "]", "else", ":", "p", "[", "0", "]", "=", "self", ".", "asttypes", ".", "NewExpr", "(", "p", "...	28.111111	10.333333
def to_seconds(value, time_unit): """ :param value: (Number), value to be translated to seconds :param time_unit: Time duration in seconds :return: Value of the value in seconds """ if isinstance(value, bool): # bool is a subclass of int. Don't let bool and fl...	[ "def", "to_seconds", "(", "value", ",", "time_unit", ")", ":", "if", "isinstance", "(", "value", ",", "bool", ")", ":", "# bool is a subclass of int. Don't let bool and float multiplication.", "raise", "TypeError", "return", "float", "(", "value", ")", "*", "time_un...	39.8	10.8
def __calculate_weight(self, stimulus1, stimulus2): """! @brief Calculate weight between neurons that have external stimulus1 and stimulus2. @param[in] stimulus1 (list): External stimulus of the first neuron. @param[in] stimulus2 (list): External stimulus of the second neur...	[ "def", "__calculate_weight", "(", "self", ",", "stimulus1", ",", "stimulus2", ")", ":", "distance", "=", "euclidean_distance_square", "(", "stimulus1", ",", "stimulus2", ")", "return", "math", ".", "exp", "(", "-", "distance", "/", "(", "2.0", "*", "self", ...	44.307692	27.615385
def clean(dry_run='n'): """Wipes compiled and cached python files. To simulate: pynt clean[dry_run=y]""" file_patterns = ['.pyc', '.pyo', '*~'] dir_patterns = ['__pycache__'] recursive_pattern_delete(project_paths.root, file_patterns, dir_patterns, dry_run=bool(dry_run.lower() == 'y'))	[ "def", "clean", "(", "dry_run", "=", "'n'", ")", ":", "file_patterns", "=", "[", "'.pyc'", ",", "'.pyo'", ",", "'*~'", "]", "dir_patterns", "=", "[", "'__pycache__'", "]", "recursive_pattern_delete", "(", "project_paths", ".", "root", ",", "file_patterns", ...	60	20.4
def create_routes(routes: Tuple[HTTPMethod], handle_http: Callable, default_base_handler_class: Any) -> List[Tuple[str, Any]]: """Creates handler routes from the provided routes. :param routes: A tuple containing the route and another tuple with all http methods allowed for the route....	[ "def", "create_routes", "(", "routes", ":", "Tuple", "[", "HTTPMethod", "]", ",", "handle_http", ":", "Callable", ",", "default_base_handler_class", ":", "Any", ")", "->", "List", "[", "Tuple", "[", "str", ",", "Any", "]", "]", ":", "created_routes", "=", ...	44.446429	18.125
def wait_for_host(port, interval=1, timeout=30, to_start=True, queue=None, ssl_pymongo_options=None): """ Ping server and wait for response. Ping a mongod or mongos every `interval` seconds until it responds, or `timeout` seconds have passed. If `to_start` is set to False, will wait f...	[ "def", "wait_for_host", "(", "port", ",", "interval", "=", "1", ",", "timeout", "=", "30", ",", "to_start", "=", "True", ",", "queue", "=", "None", ",", "ssl_pymongo_options", "=", "None", ")", ":", "host", "=", "'localhost:%i'", "%", "port", "start_time...	34.421053	18.210526
def param_to_array(*param): """ Convert an arbitrary number of parameters to :class:ndarray class objects. This is for converting parameter objects to numpy arrays, when using scipy.weave.inline routine. In scipy.weave.blitz there is no automatic array detection (even when the array inherits from :...	[ "def", "param_to_array", "(", "*", "param", ")", ":", "import", "warnings", "warnings", ".", "warn", "(", "\"Please use param.values, as this function will be deprecated in the next release.\"", ",", "DeprecationWarning", ")", "assert", "len", "(", "param", ")", ">", "0...	49.538462	22.461538
def also_restrict_to(self, restriction): """ Works like restict_to but offers an additional restriction. Playbooks use this to implement serial behavior. """ if type(restriction) != list: restriction = [ restriction ] self._also_restriction = restriction	[ "def", "also_restrict_to", "(", "self", ",", "restriction", ")", ":", "if", "type", "(", "restriction", ")", "!=", "list", ":", "restriction", "=", "[", "restriction", "]", "self", ".", "_also_restriction", "=", "restriction" ]	38.5	7.25
def deblur(input_seqs, mean_error=0.005, error_dist=None, indel_prob=0.01, indel_max=3): """Deblur the reads Parameters ---------- input_seqs : iterable of (str, str) The list of input sequences in (label, sequence) format. The label should include the sequence cou...	[ "def", "deblur", "(", "input_seqs", ",", "mean_error", "=", "0.005", ",", "error_dist", "=", "None", ",", "indel_prob", "=", "0.01", ",", "indel_max", "=", "3", ")", ":", "logger", "=", "logging", ".", "getLogger", "(", "__name__", ")", "if", "error_dist...	37.773109	22.176471
def write_file(fname, *lines): 'write lines to a file' yield 'touch {}'.format(fname) for line in lines: yield "echo {} >> {}".format(line, fname)	[ "def", "write_file", "(", "fname", ",", "*", "lines", ")", ":", "yield", "'touch {}'", ".", "format", "(", "fname", ")", "for", "line", "in", "lines", ":", "yield", "\"echo {} >> {}\"", ".", "format", "(", "line", ",", "fname", ")" ]	32.4	11.2
def validateStr(value, blank=False, strip=None, allowlistRegexes=None, blocklistRegexes=None, excMsg=None): """Raises ValidationException if value is not a string. This function is identical to the built-in input() function, but also offers the PySimpleValidate features of not allowing blank values by defau...	[ "def", "validateStr", "(", "value", ",", "blank", "=", "False", ",", "strip", "=", "None", ",", "allowlistRegexes", "=", "None", ",", "blocklistRegexes", "=", "None", ",", "excMsg", "=", "None", ")", ":", "# Validate parameters.", "_validateGenericParameters", ...	49.326087	32.456522
def delete(instance, disconnect=True): ''' Delete an instance from its metaclass instance pool and optionally disconnect it from any links it might be connected to. ''' if not isinstance(instance, Class): raise DeleteException("the provided argument is not an xtuml instance") ...	[ "def", "delete", "(", "instance", ",", "disconnect", "=", "True", ")", ":", "if", "not", "isinstance", "(", "instance", ",", "Class", ")", ":", "raise", "DeleteException", "(", "\"the provided argument is not an xtuml instance\"", ")", "return", "get_metaclass", "...	41.888889	23.444444
def p_statement_namespace(self, p): """ statement : css_namespace t_ws word css_string t_semicolon """ p[0] = Statement(list(p)[1:], p.lineno(1)) p[0].parse(None)	[ "def", "p_statement_namespace", "(", "self", ",", "p", ")", ":", "p", "[", "0", "]", "=", "Statement", "(", "list", "(", "p", ")", "[", "1", ":", "]", ",", "p", ".", "lineno", "(", "1", ")", ")", "p", "[", "0", "]", ".", "parse", "(", "None...	40.2	6.2
def parse_text(infile, xpath=None, filter_words=None, attributes=None): """Filter text using XPath, regex keywords, and tag attributes. Keyword arguments: infile -- HTML or text content to parse (list) xpath -- an XPath expression (str) filter_words -- regex keywords (list) attributes -- HTML t...	[ "def", "parse_text", "(", "infile", ",", "xpath", "=", "None", ",", "filter_words", "=", "None", ",", "attributes", "=", "None", ")", ":", "infiles", "=", "[", "]", "text", "=", "[", "]", "if", "xpath", "is", "not", "None", ":", "infile", "=", "par...	34.75	17.25
def validate_arg(f, arg_name, validation_func, # type: ValidationFuncs *kwargs ): # type: (...) -> Callable """ A decorator to apply function input validation for the given argument name, with the provided base validation function(s)...	[ "def", "validate_arg", "(", "f", ",", "arg_name", ",", "", "validation_func", ",", "# type: ValidationFuncs", "", "", "kwargs", ")", ":", "# type: (...) -> Callable", "return", "decorate_with_validation", "(", "f", ",", "arg_name", ",", "", "validation_func", ...	67.464286	40.392857
def senses(self, bestonly=False): """Returns a list of all predicted senses""" l = [] for word_id, senses,distance in self: for sense, confidence in senses: if not sense in l: l.append(sense) if bestonly: break return l	[ "def", "senses", "(", "self", ",", "bestonly", "=", "False", ")", ":", "l", "=", "[", "]", "for", "word_id", ",", "senses", ",", "distance", "in", "self", ":", "for", "sense", ",", "confidence", "in", "senses", ":", "if", "not", "sense", "in", "l",...	34.111111	11.444444
def stream(self): """Iterate over the messages from the computation's output. Control and metadata messages are intercepted and interpreted to enhance this Computation's object knowledge of the computation's context. Data and event messages are yielded back to the caller as a ge...	[ "def", "stream", "(", "self", ")", ":", "iterator", "=", "iter", "(", "self", ".", "_stream", ")", "while", "self", ".", "_state", "<", "Computation", ".", "STATE_COMPLETED", ":", "try", ":", "message", "=", "next", "(", "iterator", ")", "except", "Sto...	39.946809	21.031915

def prepare_timestamp_micros(data, schema): """Converts datetime.datetime to int timestamp with microseconds""" if isinstance(data, datetime.datetime): if data.tzinfo is not None: delta = (data - epoch) return int(delta.total_seconds() * MCS_PER_SECOND) t = int(time.mktim...

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38.818182

14

def remap_overlapping_column_names(table_op, root_table, data_columns): """Return an ``OrderedDict`` mapping possibly suffixed column names to column names without suffixes. Parameters ---------- table_op : TableNode The ``TableNode`` we're selecting from. root_table : TableNode ...

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30.783784

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def get_section_relations(Section): """Find every relationship between section and the item model.""" all_rels = (Section._meta.get_all_related_objects() + Section._meta.get_all_related_many_to_many_objects()) return filter_item_rels(all_rels)

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53.4

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def messageReceived(self, value, sender, target): """ An AMP-formatted message was received. Dispatch to the appropriate command responder, i.e. a method on this object exposed with L{commandMethod.expose}. @see IMessageReceiver.messageReceived """ if value.type...

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45.56

16.92

def expect_loop(self, searcher, timeout=-1, searchwindowsize=-1): '''This is the common loop used inside expect. The 'searcher' should be an instance of searcher_re or searcher_string, which describes how and what to search for in the input. See expect() for other arguments, return valu...

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47.888889

25.888889

def unregister_checker(self, checker): """Unregister a checker instance.""" if checker in self._checkers: self._checkers.remove(checker)

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40.25

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def delete(cls, session, record, endpoint_override=None, out_type=None): """Delete a record. Args: session (requests.sessions.Session): Authenticated session. record (helpscout.BaseModel): The record to be deleted. endpoint_override (str, optional): Override the defa...

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35.68

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def reconfigure_bird(cmd): """Reconfigure BIRD daemon. Arguments: cmd (string): A command to trigger a reconfiguration of Bird daemon Notes: Runs 'birdc configure' to reconfigure BIRD. Some useful information on how birdc tool works: -- Returns a non-zero exit code only...

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42.574074

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def __extract_model_summary_value(model, value): """ Extract a model summary field value """ field_value = None if isinstance(value, _precomputed_field): field_value = value.field else: field_value = model._get(value) if isinstance(field_value, float): try: ...

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26.6

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def is_repository(self, path): """ Check if there is a Repository in path. :Parameters: #. path (string): The real path of the directory where to check if there is a repository. :Returns: #. result (boolean): Whether its a repository or not. """ ...

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32.6875

19.6875

def decompress_G1(z: G1Compressed) -> G1Uncompressed: """ Recovers x and y coordinates from the compressed point. """ # b_flag == 1 indicates the infinity point b_flag = (z % POW_2_383) // POW_2_382 if b_flag == 1: return Z1 x = z % POW_2_381 # Try solving y coordinate from the ...

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31.304348

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def iter_bitstream(self, iter_duration_generator): """ iterate over self.iter_trigger() and yield the bits """ assert self.half_sinus == False # Allways trigger full sinus cycle # build min/max Hz values bit_nul_min_hz = self.cfg.BIT_NUL_HZ - self.cfg.HZ_VARIATIO...

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38.916667

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def _dihed_cos_low(a, b, c, deriv): """Similar to dihed_cos, but with relative vectors""" a = Vector3(9, deriv, a, (0, 1, 2)) b = Vector3(9, deriv, b, (3, 4, 5)) c = Vector3(9, deriv, c, (6, 7, 8)) b /= b.norm() tmp = b.copy() tmp *= dot(a, b) a -= tmp tmp = b.copy() tmp *= dot(c...

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26

15.133333

def main(): '''Main routine.''' # validate command line arguments arg_parser = argparse.ArgumentParser() arg_parser.add_argument('--name', '-n', required=True, action='store', help='Name') arg_parser.add_argument('--rgname', '-g', required=True, action='store', help='Res...

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37.9375

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def get_sample(self, res, resMode='abs', DL=None, method='sum', ind=None, compact=False): """ Return a linear sampling of the LOS The LOS is sampled into a series a points and segments lengths The resolution (segments length) is <= res The sampling can be done accordin...

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43.125

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def _unfuse(self): """Unfuses the fused RNN in to a stack of rnn cells.""" assert not self._projection_size, "_unfuse does not support projection layer yet!" assert not self._lstm_state_clip_min and not self._lstm_state_clip_max, \ "_unfuse does not support state clipping yet!" ...

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57.289474

29.421053

def _get_signature_type_and_params(self, request): """Extracts parameters from query, headers and body. Signature type is set to the source in which parameters were found. """ # Per RFC5849, only the Authorization header may contain the 'realm' # optional parameter. heade...

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47.853659

22.341463

def mail_sent_content(self, text, part): """ Test an email contains (assert text in) the given text in the relevant message part (accessible as an attribute on the email object). This step strictly applies whitespace. Syntax: I have sent an email with "`text`" in the `part` Example: ...

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28.428571

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def generate_code(max_length, max_nest, ops): """Generates code samples. Args: max_length: int. max literal length. max_nest: int. max nesting level. ops: CodeOp. set of allowable operations. Returns: 1. (str) output value. 2. (str) Code operation. """ stack = [] def fetch_one(): ...

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29.25641

17.025641

def _get_metadata(self, key='', default=None, builtin=True): """ get_metadata([key, default, simple]) Retrieve metadata with nested keys separated by dots. This is useful to avoid repeatedly checking if a dict exists, as the frontmatter might not have the keys that we expect. With ``builtin=T...

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35.8

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def encodeMessage(self, events): """Encode a list of Tensor events with protobuf""" message = proto_pb2.Msg( events=[self.encodeEvent(e) for e in events if e._type=='riemann'] ) return message.SerializeToString()

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31.375

20.875

def pop(self, count): """Returns new context stack, which doesn't contain few levels """ if len(self._contexts) - 1 < count: _logger.error("#pop value is too big %d", len(self._contexts)) if len(self._contexts) > 1: return ContextStack(self._contexts[:1], ...

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40.545455

17.909091

def serverUrl(self, value): """gets/sets the server url""" if value.lower() != self._serverUrl.lower(): self._serverUrl = value

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38

7.5

def PauseHunt(hunt_id, reason=None): """Pauses a hunt with a given id.""" hunt_obj = data_store.REL_DB.ReadHuntObject(hunt_id) if hunt_obj.hunt_state != hunt_obj.HuntState.STARTED: raise OnlyStartedHuntCanBePausedError(hunt_obj) data_store.REL_DB.UpdateHuntObject( hunt_id, hunt_state=hunt_obj.HuntSt...

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38.583333

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def _split_sched_block_instance(self, scheduling_block): """Split the scheduling block data into multiple names before adding to the configuration database""" # Initialise empty list _scheduling_block_data = {} _processing_block_data = {} _processing_block_id = [] ...

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40.1875

19.0625

def applications(self): """returns all the group applications to join""" url = self._url + "/applications" params = {"f" : "json"} res = self._get(url=url, param_dict=params, proxy_url=self._proxy_url, proxy...

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43.777778

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async def _on_progress_notification(self, progress): """Callback function called when a progress notification is received. Args: progress (dict): The received notification containing the progress information """ conn_string = progress.get('connection_string') done =...

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39.153846

21.153846

def delete_bams(job, bams, patient_id): """ Delete the bams from the job Store once their purpose has been achieved (i.e. after all mutation calling steps). Will also delete the chimeric junction file from Star. :param dict bams: Dict of bam and bai files :param str patient_id: The ID of the patien...

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49.041667

23.541667

def pop( self, *args, **kwargs): """ Removes and returns item at specified index (default= ``last``). Supports both ``list`` and ``dict`` semantics for ``pop()``. If passed no argument or an integer argument, it will use ``list`` semantics and pop tokens from the list of parsed t...

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37.611111

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def fastMean(img, f=10, inplace=False): ''' for bigger ksizes it if often faster to resize an image rather than blur it... ''' s0,s1 = img.shape[:2] ss0 = int(round(s0/f)) ss1 = int(round(s1/f)) small = cv2.resize(img,(ss1,ss0), interpolation=cv2.INTER_AREA) #bigger ...

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28.6

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def get_ec2_info(instance_id, region, access_key_id, secret_access_key, username): """ queries EC2 for details about a particular instance_id """ conn = connect_to_ec2(region, access_key_id, secret_access_key) instance = conn.get_only_i...

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35.333333

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def get(self, query, *parameters, **kwparameters): """Returns the first row returned for the given query.""" rows = self._query(query, parameters, kwparameters) if not rows: return None elif not isinstance(rows, list): raise MySQLError("Query is not a select query...

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def present(name, tablespace=None, encoding=None, lc_collate=None, lc_ctype=None, owner=None, owner_recurse=False, template=None, user=None, maintenance_db=None, db_password=None, db_host=...

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async def _retrieve_messages_around_strategy(self, retrieve): """Retrieve messages using around parameter.""" if self.around: around = self.around.id if self.around else None data = await self.logs_from(self.channel.id, retrieve, around=around) self.around = None ...

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def degree(self, vertex): """ Return the degree of a vertex """ try: return len(self.vertices[vertex]) except KeyError: raise GraphInsertError("Vertex %s doesn't exist." % (vertex,))

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30.75

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def word_break(s, word_dict): """ :type s: str :type word_dict: Set[str] :rtype: bool """ dp = [False] * (len(s)+1) dp[0] = True for i in range(1, len(s)+1): for j in range(0, i): if dp[j] and s[j:i] in word_dict: dp[i] = True break ...

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def keyReleaseEvent(self, event): """Override Qt method.""" if event.key() == Qt.Key_Alt: self._alt_key_is_down = False self.update()

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33.8

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def generate_type_docs(types): """Parse an object of types and generate RAML documentation for them. Expects each type to be either a regular type or a list/array. If a type is a list, it must specify what type to use for each item. """ output = StringIO() indent = " " # 2 # loop through...

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def build_database_sortmerna(fasta_path, max_pos=None, output_dir=None, temp_dir=tempfile.gettempdir(), HALT_EXEC=False): """ Build sortmerna db from fasta_path; return db name and list of fil...

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def mkconstraints(): """ Make constraint list for binary constraint problem. """ constraints = [] for j in range(1, 10): vars = ["%s%d" % (i, j) for i in uppercase[:9]] constraints.extend((c, const_different) for c in combinations(vars, 2)) for i in uppercase[:9]: vars ...

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33.571429

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def add_path(self, nodes, **attr): """In replacement for Deprecated add_path method""" if nx.__version__[0] == "1": return super().add_path(nodes, **attr) else: return nx.add_path(self, nodes, **attr)

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40.5

9.666667

def delete_report(server, report_number, timeout=HQ_DEFAULT_TIMEOUT): """ Delete a specific crash report from the server. :param report_number: Report Number :return: server response """ try: r = requests.post(server + "/reports/delete/%d" % report_number, timeout=timeout) except Exc...

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async def set(self, *args, **kwargs): """ Set Secret Set the secret associated with some key. If the secret already exists, it is updated instead. This method takes input: ``v1/secret.json#`` This method is ``stable`` """ return await self._makeApiCal...

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def _get_style_of_faulting_term(self, C, rup): """ Returns the style-of-faulting scaling term defined in equations 4 to 6 """ if (rup.rake > 30.0) and (rup.rake < 150.): frv = 1.0 fnm = 0.0 elif (rup.rake > -150.0) and (rup.rake < -30.0): fnm =...

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28.636364

17

def _thread_loop(self): """Background thread used when Sender is in asynchronous/interval mode.""" last_check_time = time.time() messages = [] while True: # Get first message from queue, blocking until the next time we # should be sending time_since_la...

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41.382979

16.659574

def _print_SCALAR_TYPES(self, expr, *args, **kwargs): """Render scalars""" adjoint = kwargs.get('adjoint', False) if adjoint: expr = expr.conjugate() if isinstance(expr, SympyBasic): self._sympy_printer._print_level = self._print_level + 1 res = self._...

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41.434783

15.173913

def _cloglog_utility_transform(systematic_utilities, alt_IDs, rows_to_alts, shape_params, intercept_params, intercept_ref_pos=None, *a...

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49.946237

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def get(ctx): """Get build job. Uses [Caching](/references/polyaxon-cli/#caching) Examples: \b ```bash $ polyaxon build -b 1 get ``` \b ```bash $ polyaxon build --build=1 --project=project_name get ``` """ user, project_name, _build = get_build_or_local(ctx.obj.ge...

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28.518519

28.888889

def list_installed_files(self): """ Iterates over the ``installed-files.txt`` entries and returns a tuple ``(path, hash, size)`` for each line. :returns: a list of (path, hash, size) """ def _md5(path): f = open(path, 'rb') try: c...

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def get_reference_types(self): """Return the reference types. Zotero.item_types() caches data after the first API call. """ item_types = self._zotero_lib.item_types() return sorted([x["itemType"] for x in item_types])

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36

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def disassemble(self, data, address, architecture_mode=None): """Disassemble the data into an instruction. """ # TODO: Improve this code! if architecture_mode is None: if self._arch_mode is None: architecture_mode = ARCH_ARM_MODE_THUMB else: ...

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def setup_default_permissions(session, instance): """Setup default permissions on newly created entities according to. :attr:`Entity.__default_permissions__`. """ if instance not in session.new or not isinstance(instance, Entity): return if not current_app: # working outside app_co...

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30.384615

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def field(self, type, field, default=None): '''convenient function for returning an arbitrary MAVLink field with a default''' if not type in self.messages: return default return getattr(self.messages[type], field, default)

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44

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def print_loop(self, sf, sftag, f=sys.stdout, file_format="nmrstar", tw=3): """Print loop into a file or stdout. :param str sf: Saveframe name. :param str sftag: Saveframe tag, i.e. field name. :param io.StringIO f: writable file-like stream. :param str file_format: Format to us...

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48.52

23.6

def on_mouse_event(self, event): '''handle mouse events''' pos = event.GetPosition() if event.RightDown() and self.popup_menu is not None: self.show_popup_menu(pos) return if event.Leaving(): self.mouse_pos = None else: self.mouse_p...

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def format(self, record): """ The formatting function :param record: The record object :return: The string representation of the record """ try: n = record.n except AttributeError: n = 'default' try: message = record....

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24.461538

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def open(self, **params): """Open telnet connection Args: params (dict), must contain two parameters "ip" - ip address or hostname and "port" - port number Example: params = {'port': 23, 'ip': 'localhost'} """ logger.info('opening telnet') self.p...

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28.714286

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def _pretty_format(self, statement, result): """ Format the return value of a query for humans """ if result is None: return "Success" ret = result if statement.action in ("SELECT", "SCAN"): if statement.save_file: filename = statement.save_file[0]...

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def load_cufflinks_dict(*args, **kwargs): """ Returns dictionary mapping feature identifier (either transcript or gene ID) to a DataFrame row with fields: id : str novel : bool fpkm : float chr : str start : int end : int gene_names : str list """ ...

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def folderitem(self, obj, item, index): """Service triggered each time an item is iterated in folderitems. The use of this service prevents the extra-loops in child objects. :obj: the instance of the class to be foldered :item: dict containing the properties of the object to be used by...

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34.657895

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def save(self, filename, binary=True): """ Writes a rectilinear grid to disk. Parameters ---------- filename : str Filename of grid to be written. The file extension will select the type of writer to use. ".vtk" will use the legacy writer, while ...

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34.051282

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def fromimage(im, flatten=False, mode=None): """ Return a copy of a PIL image as a numpy array. Parameters ---------- im : PIL image Input image. flatten : bool If true, convert the output to grey-scale. mode : str, optional Mode to convert image to, e.g. ``'RGB'``. ...

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def cf_to_proj(var): r"""Convert a Variable with projection information to a Proj.4 Projection instance. The attributes of this Variable must conform to the Climate and Forecasting (CF) netCDF conventions. Parameters ---------- var : Variable The projection variable with appropriate at...

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38.314286

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def chinese_remainder(n, a): """ Solves CRT for moduli and remainders :param n: :param a: :return: """ sum = 0 prod = reduce(lambda a, b: a * b, n) for n_i, a_i in zip(n, a): p = prod // n_i sum += a_i * DlogFprint.mul_inv(...

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24.571429

14.571429

def get_configurable_by_name(self, name): """ Returns the registered configurable with the specified name or ``None`` if no such configurator exists. """ l = [c for c in self.configurables if c.name == name] if l: return l[0]

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34.75

14.75

def unique(lst): """Unique with keeping sort/order ["a", "c", "b", "c", "c", ["d", "e"]] Results in ["a", "c", "b", "d", "e"] """ nl = [] [(nl.append(e) if type(e) is not list else nl.extend(e)) \ for e in lst if e not in nl] return nl

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24.636364

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async def unsubscribe(self, topic: str): """Unsubscribe from a topic :param topic: required :returns: None Sample ws response .. code-block:: python { "id": "1545910840805", "type": "ack" } """ req_msg...

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def get_activity(self, name): """ Retrieve an activity given its name. :param name: The name of the activity. :returns: The activity. """ return [a for a in self.activities if a.name == name][0]

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23.6

17.4

def run(self): """ Start monitoring operation policy files. """ self.initialize_tracking_structures() if self.live_monitoring: self.logger.info("Starting up the operation policy file monitor.") while not self.halt_trigger.is_set(): time.sl...

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33.785714

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def patch_compat(config): """ Support older config values. """ if 'web_host' in config: config['host'] = config.pop('web_host') if 'web_port' in config: config['port'] = config.pop('web_port')

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24.25

7.25

def stationarystate(self, k): """See docs for `Model` abstract base class.""" assert 0 <= k < self.ncats return self._models[k].stationarystate

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41

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def main(): """ %prog database.fa query.fa [options] Wrapper for NCBI BLAST+. """ p = OptionParser(main.__doc__) p.add_option("--format", default=" \'6 qseqid sseqid pident length " \ "mismatch gapopen qstart qend sstart send evalue bitscore\' ", help="0-11, learn more ...

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33.373494

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def registerEditor(self, name, op, cls=None, defaultValue=None, flags=0): """ Registers an editor for the given operator as the given name. If no editor class is supplied, ...

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41.5

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def _prop_name(self): """ Calculate property name from tag name, e.g. a:schemeClr -> schemeClr. """ if ':' in self._nsptagname: start = self._nsptagname.index(':') + 1 else: start = 0 return self._nsptagname[start:]

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31

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def construct_request(self, request_args=None, **kwargs): """ The method where everything is setup for sending the request. The request information is gathered and the where and how of sending the request is decided. :param request_args: Initial request arguments :param ...

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39.842105

21.105263

def refresh_all_state_machines(self): """ Refreshes all state machine tabs """ self.refresh_state_machines(list(self.model.state_machine_manager.state_machines.keys()))

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47.25

15

def threadpooled( func: None = None, *, loop_getter: typing.Union[None, typing.Callable[..., asyncio.AbstractEventLoop], asyncio.AbstractEventLoop] = None, loop_getter_need_context: bool = False, ) -> ThreadPooled: """Overload: No function."""

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def register_parameters(self, *parameters): """ Register parameters. """ for param in parameters: self.parameter_count += np.prod(param.get_value().shape) self.parameters.extend(parameters)

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33.571429

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def cache(self, CachableItem): """Updates cache area with latest information """ _cachedItem = self.get(CachableItem) if not _cachedItem: _dirtyCachedItem = self.mapper.get(CachableItem) logger.debug("new cachable item added to sql cache area {id: %s, type: %s}", ...

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def disassemble(self, lineno_width=3, mark_as_current=False, asm_format=False, show_bytes=False): """Format instruction details for inclusion in disassembly output *lineno_width* sets the width of the line number field (0 omits it) *ma...

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38.543478

13.021739

def main_hrun(): """ parse command line options and run commands.""" parser = argparse.ArgumentParser(description="Tools for http(s) test. Base on rtsf.") parser.add_argument( '--log-level', default='INFO', help="Specify logging level, default is INFO.") p...

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33.75

19.833333

def contents(self): """Get svg string """ c = self._header[:] c.append(' font-weight="{}"'.format(self.font_weight)) c.append(' font-family="{}"'.format(self.font_family)) c.append(' width="{}" height="{}"'.format(*self.screen_size)) sclw = self.original_size[0] *...

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45.772727

15.227273

def from_directory_as_inmemory_db(cls, gtfs_directory): """ Instantiate a GTFS object by computing Parameters ---------- gtfs_directory: str path to the directory for importing the database """ # this import is here to avoid circular imports (which tu...

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35.176471

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def p_new_expr_nobf(self, p): """new_expr_nobf : member_expr_nobf | NEW new_expr """ if len(p) == 2: p[0] = p[1] else: p[0] = self.asttypes.NewExpr(p[2]) p[0].setpos(p)

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28.111111

10.333333

def to_seconds(value, time_unit): """ :param value: (Number), value to be translated to seconds :param time_unit: Time duration in seconds :return: Value of the value in seconds """ if isinstance(value, bool): # bool is a subclass of int. Don't let bool and fl...

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39.8

10.8

def __calculate_weight(self, stimulus1, stimulus2): """! @brief Calculate weight between neurons that have external stimulus1 and stimulus2. @param[in] stimulus1 (list): External stimulus of the first neuron. @param[in] stimulus2 (list): External stimulus of the second neur...

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44.307692

27.615385

def clean(dry_run='n'): """Wipes compiled and cached python files. To simulate: pynt clean[dry_run=y]""" file_patterns = ['*.pyc', '*.pyo', '*~'] dir_patterns = ['__pycache__'] recursive_pattern_delete(project_paths.root, file_patterns, dir_patterns, dry_run=bool(dry_run.lower() == 'y'))

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60

20.4

def create_routes(routes: Tuple[HTTPMethod], handle_http: Callable, default_base_handler_class: Any) -> List[Tuple[str, Any]]: """Creates handler routes from the provided routes. :param routes: A tuple containing the route and another tuple with all http methods allowed for the route....

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44.446429

18.125

def wait_for_host(port, interval=1, timeout=30, to_start=True, queue=None, ssl_pymongo_options=None): """ Ping server and wait for response. Ping a mongod or mongos every `interval` seconds until it responds, or `timeout` seconds have passed. If `to_start` is set to False, will wait f...

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34.421053

18.210526

def param_to_array(*param): """ Convert an arbitrary number of parameters to :class:ndarray class objects. This is for converting parameter objects to numpy arrays, when using scipy.weave.inline routine. In scipy.weave.blitz there is no automatic array detection (even when the array inherits from :...

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49.538462

22.461538

def also_restrict_to(self, restriction): """ Works like restict_to but offers an additional restriction. Playbooks use this to implement serial behavior. """ if type(restriction) != list: restriction = [ restriction ] self._also_restriction = restriction

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38.5

7.25

def deblur(input_seqs, mean_error=0.005, error_dist=None, indel_prob=0.01, indel_max=3): """Deblur the reads Parameters ---------- input_seqs : iterable of (str, str) The list of input sequences in (label, sequence) format. The label should include the sequence cou...

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37.773109

22.176471

def write_file(fname, *lines): 'write lines to a file' yield 'touch {}'.format(fname) for line in lines: yield "echo {} >> {}".format(line, fname)

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32.4

11.2

def validateStr(value, blank=False, strip=None, allowlistRegexes=None, blocklistRegexes=None, excMsg=None): """Raises ValidationException if value is not a string. This function is identical to the built-in input() function, but also offers the PySimpleValidate features of not allowing blank values by defau...

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49.326087

32.456522

def delete(instance, disconnect=True): ''' Delete an *instance* from its metaclass instance pool and optionally *disconnect* it from any links it might be connected to. ''' if not isinstance(instance, Class): raise DeleteException("the provided argument is not an xtuml instance") ...

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41.888889

23.444444

def p_statement_namespace(self, p): """ statement : css_namespace t_ws word css_string t_semicolon """ p[0] = Statement(list(p)[1:], p.lineno(1)) p[0].parse(None)

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40.2

6.2

def parse_text(infile, xpath=None, filter_words=None, attributes=None): """Filter text using XPath, regex keywords, and tag attributes. Keyword arguments: infile -- HTML or text content to parse (list) xpath -- an XPath expression (str) filter_words -- regex keywords (list) attributes -- HTML t...

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34.75

17.25

def validate_arg(f, arg_name, *validation_func, # type: ValidationFuncs **kwargs ): # type: (...) -> Callable """ A decorator to apply function input validation for the given argument name, with the provided base validation function(s)...

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67.464286

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def senses(self, bestonly=False): """Returns a list of all predicted senses""" l = [] for word_id, senses,distance in self: for sense, confidence in senses: if not sense in l: l.append(sense) if bestonly: break return l

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34.111111

11.444444

def stream(self): """Iterate over the messages from the computation's output. Control and metadata messages are intercepted and interpreted to enhance this Computation's object knowledge of the computation's context. Data and event messages are yielded back to the caller as a ge...

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39.946809

21.031915