text stringlengths 89 104k | code_tokens list | avg_line_len float64 7.91 980 | score float64 0 630 |
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def lbest_idx(state, idx):
""" lbest Neighbourhood topology function.
Neighbourhood size is determined by state.params['n_s'].
Args:
state: cipy.algorithms.pso.State: The state of the PSO algorithm.
idx: int: index of the particle in the swarm.
Returns:
int: The index of the l... | [
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def read(self, input_stream, kmip_version=enums.KMIPVersion.KMIP_1_0):
"""
Read the data encoding the GetUsageAllocation request payload and
decode it into its constituent parts.
Args:
input_stream (stream): A data stream containing encoded object
data, suppo... | [
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def domains(request):
"""
A page with number of services and layers faceted on domains.
"""
url = ''
query = '*:*&facet=true&facet.limit=-1&facet.pivot=domain_name,service_id&wt=json&indent=true&rows=0'
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def encode_file_header(boundary, paramname, filesize, filename=None,
filetype=None):
"""Returns the leading data for a multipart/form-data field that contains
file data.
``boundary`` is the boundary string used throughout a single request to
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def _CheckCacheFileForMatch(self, cache_filename, scopes):
"""Checks the cache file to see if it matches the given credentials.
Args:
cache_filename: Cache filename to check.
scopes: Scopes for the desired credentials.
Returns:
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def kunc_p(v, v0, k0, k0p, order=5):
"""
calculate Kunc EOS
see Dorogokupets 2015 for detail
:param v: unit-cell volume in A^3
:param v0: unit-cell volume in A^3 at 1 bar
:param k0: bulk modulus at reference conditions
:param k0p: pressure derivative of bulk modulus at reference conditions
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def save(self, project):
'''
Saves an AnswerFactory Project
Args:
project (dict): Dictionary specifying an AnswerFactory Project.
Returns:
AnswerFactory Project id
'''
# test if this is a create vs. an update
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def plot(self,xdata,ydata=[],logScale=False,disp=True,**kwargs):
'''Graphs a line plot.
xdata: list of independent variable data. Can optionally include a header, see testGraph.py in https://github.com/Dfenestrator/GooPyCharts for an example.
ydata: list of dependent variable data. Can ... | [
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def mps_device_memory_limit():
"""
Returns the memory size in bytes that can be effectively allocated on the
MPS device that will be used, or None if no suitable device is available.
"""
lib = _load_tcmps_lib()
if lib is None:
return None
c_size = _ctypes.c_uint64()
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def render_error_debug(request, exception, is_html):
'''Render the ``exception`` traceback
'''
error = Html('div', cn='well well-lg') if is_html else []
for trace in format_traceback(exception):
counter = 0
for line in trace.split('\n'):
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def get_signature(self, signature):
"""Retrieve one signature, discriminated by name or id.
Note that signature name is not case sensitive.
:param: a zobjects.Signature describing the signature
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def augment_send(self, send_func):
"""
:param send_func:
a function that sends messages, such as :meth:`.Bot.send\*`
:return:
a function that wraps around ``send_func`` and examines whether the
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def set_last_position(self, last_position):
"""
Called from the manager, it is in charge of updating the last position of data commited
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def set(self, value):
"""Set a GValue.
The value is converted to the type of the GValue, if possible, and
assigned.
"""
# logger.debug('GValue.set: value = %s', value)
gtype = self.gvalue.g_type
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def find_related_modules(package, related_name_re='.+',
ignore_exceptions=False):
"""Find matching modules using a package and a module name pattern."""
warnings.warn('find_related_modules has been deprecated.',
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def handle(cls, value, **kwargs):
"""Use a value from the environment or fall back to a default if the
environment doesn't contain the variable.
Format of value:
<env_var>::<default value>
For example:
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def cli(env, identifier, path, name):
"""Adds an attachment to an existing ticket."""
mgr = SoftLayer.TicketManager(env.client)
ticket_id = helpers.resolve_id(mgr.resolve_ids, identifier, 'ticket')
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def js_on_change(self, event, *callbacks):
''' Attach a ``CustomJS`` callback to an arbitrary BokehJS model event.
On the BokehJS side, change events for model properties have the
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def get(
self, uri, host=None, strict_slashes=None, version=None, name=None
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"""
Add an API URL under the **GET** *HTTP* method
:param uri: URL to be tagged to **GET** method of *HTTP*
:param host: Host IP or FQDN for the service to use
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def is_connected(self):
r"""Check if the graph is connected (cached).
A graph is connected if and only if there exists a (directed) path
between any two vertices.
Returns
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connected : bool
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def confindr_reporter(self, analysistype='confindr'):
"""
Creates a final report of all the ConFindr results
"""
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data = 'Strain,Genus,NumContamSNVs,ContamStatus,PercentContam,PercentContamSTD\n'
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def layer_mapproxy(request, catalog_slug, layer_uuid, path_info):
"""
Get Layer with matching catalog and uuid
"""
layer = get_object_or_404(Layer,
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def _normalized(self, data):
"""
Does a normalization of sorts on image type data so that values
that should be integers are converted from strings
"""
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def _spintaylor_aligned_prec_swapper(**p):
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def QA_util_datetime_to_strdate(dt):
"""
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def GetAmi(ec2, ami_spec):
""" Get the boto ami object given a AmiSpecification object. """
images = ec2.get_all_images(owners=[ami_spec.owner_id] )
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def _update_config_sets(self,directory,files=None):
"""
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only reads first line. Format is comma separated eg.
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def _conn_string_odbc(self, db_key, instance=None, conn_key=None, db_name=None):
''' Return a connection string to use with odbc
'''
if instance:
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def write(self, path, data, offset=0, timeout=0):
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path is a string, data binary; it is responsability of the caller
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def render_revalidation_failure(self, failed_step, form, **kwargs):
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When a step fails, we have to redirect the user to the first failing
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def find_disulfide_bridges(self, representatives_only=True):
"""Run Biopython's disulfide bridge finder and store found bridges.
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def _is_collinear(self, x, y):
"""
Checks if first three points are collinear
"""
pts = np.column_stack([x[:3], y[:3], np.ones(3)])
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def to_nullable_boolean(value):
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Converts value into boolean or returns None when conversion is not possible.
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Sets an option from an SConscript file.
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def commit(self, message=None):
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def dependencies(self, sort=False):
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def ignore_cxx(self) -> bool:
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def snapshots(self, space_id, environment_id, resource_id, resource_kind='entries'):
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Provides access to snapshot management methods.
API reference: https://www.contentful.com/developers/docs/references/content-management-api/#/reference/snapshots
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def query_versions(self, version=None):
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def cmd_build(conf: Config, run_tests: bool=False):
"""Build requested targets, and their dependencies."""
build_context = BuildContext(conf)
populate_targets_graph(build_context, conf)
build_context.build_graph(run_tests=run_tests)
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def close_connection(self, connection, force=False):
"""overriding the baseclass function, this routine will decline to
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def list_project(self, offset=0, size=100):
""" list the project
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def residmap(self, prefix='', **kwargs):
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def baltree(ntips, treeheight=1.0):
"""
Returns a balanced tree topology.
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# require even number of tips
if ntips % 2:
raise ToytreeError("balanced trees must have even number of tips.")
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def read_namespaced_network_policy(self, name, namespace, **kwargs):
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read the specified NetworkPolicy
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def __unLock(self):
"""Unlock sending requests to projector."""
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def plot_validate(self, figure_list):
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def _merge_extra_filerefs(*args):
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Takes a list of filerefs and returns a merged list
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def _decode_embedded_dict(src):
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Convert enbedded bytes to strings if possible.
Dict helper.
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def pre_delete(cls, sender, instance, *args, **kwargs):
"""Deletes the CC email marketing campaign associated with me.
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cc = ConstantContact()
response = cc.delete_email_marketing_campaign(instance)
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def get_provider(self, name):
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if name not in self.providers:
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def run_json(self):
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def from_raw(self, file_names=None, **kwargs):
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def search_anime(self, query):
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def filter_google_songs(songs, include_filters=None, exclude_filters=None, all_includes=False, all_excludes=False):
"""Match a Google Music song dict against a set of metadata filters.
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songs (list): Google Music song dicts to filter.
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def generate_random_nhs_number() -> int:
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"""
check_digit = 10 # NHS numbers with this check digit are all invalid
while check_digit == 10:
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def parse_text(text: str, schema: dict) -> Any:
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def filter_publisher_references(root, head, update):
"""Remove references from ``update`` if there are any in ``head``.
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def parse(representation):
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word : str
A word to strip punctuation from
Returns
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str
The word stripped of punctuation
Examples
------... | [
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"strip... | 23.88 | 19.48 |
def element_text_should_be(self, locator, expected, message=''):
"""Verifies element identified by ``locator`` exactly contains text ``expected``.
In contrast to `Element Should Contain Text`, this keyword does not try
a substring match but an exact match on the element identified by ``loca... | [
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"=... | 47.631579 | 22.684211 |
def calc_coverage(ref, start, end, length, nucs):
"""
calculate coverage for positions in range start -> end
"""
ref = ref[start - 1:end]
bases = 0
for pos in ref:
for base, count in list(pos.items()):
if base in nucs:
bases += count
return float(bases)/fl... | [
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"in"... | 29.181818 | 10.636364 |
def find_value_in_object(attr, obj):
"""Return values for any key coincidence with attr in obj or any other
nested dict.
"""
# Carry on inspecting inside the list or tuple
if isinstance(obj, (collections.Iterator, list)):
for item in obj:
yield from find_value_in_object(attr, it... | [
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... | 32.9 | 19 |
async def _on_report_notification(self, event):
"""Callback function called when a report event is received.
Args:
event (dict): The report_event
"""
conn_string = event.get('connection_string')
report = self._report_parser.deserialize_report(event.get('serialized_r... | [
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... | 34.181818 | 21 |
def has_source_contents(self, src_id):
"""Checks if some sources exist."""
return bool(rustcall(_lib.lsm_view_has_source_contents,
self._get_ptr(), src_id)) | [
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] | 49.5 | 9.75 |
def get_needs_provenance(parameters):
"""Get the provenance of minimum needs.
:param parameters: A dictionary of impact function parameters.
:type parameters: dict
:returns: A parameter of provenance
:rtype: TextParameter
"""
if 'minimum needs' not in parameters:
return None
ne... | [
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def compute_memory_contents_under_schedule(self, schedule):
"""The in-memory tensors present when executing each operation in schedule.
Simulates running operations in the order given by a schedule. Keeps track
of the tensors in memory at every point in time, and outputs a list (one
entry for each poin... | [
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... | 42.926829 | 22.97561 |
def publishFeatureCollections(self, configs):
"""Publishes feature collections to a feature service.
Args:
configs (list): A list of JSON configuration feature service details to publish.
Returns:
dict: A dictionary of results objects.
"""
if sel... | [
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... | 29.517241 | 21.465517 |
def _calculate_distance(latlon1, latlon2):
"""Calculates the distance between two points on earth.
"""
lat1, lon1 = latlon1
lat2, lon2 = latlon2
dlon = lon2 - lon1
dlat = lat2 - lat1
R = 6371 # radius of the earth in kilometers
a = np.sin(dlat / 2)**2 + np.cos(lat1) * np.cos(lat2) * (np... | [
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"# radius of the earth... | 37.272727 | 16 |
def _update_dest_ip(self):
'''如果未指定DEST_IP,默认与RTSP使用相同IP'''
global DEST_IP
if not DEST_IP:
DEST_IP = self._sock.getsockname()[0]
PRINT('DEST_IP: %s\n'%DEST_IP, CYAN) | [
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] | 34.666667 | 11 |
def decode(string, encoding=None, errors=None):
"""Decode from specified encoding.
``encoding`` defaults to the preferred encoding.
``errors`` defaults to the preferred error handler.
"""
if encoding is None:
encoding = getpreferredencoding()
if errors is None:
errors = getprefe... | [
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def _get_stddevs(self, C, stddev_types, num_sites, mag, c1_rrup,
log_phi_ss, mean_phi_ss):
"""
Return standard deviations
"""
phi_ss = _compute_phi_ss(C, mag, c1_rrup, log_phi_ss, mean_phi_ss)
stddevs = []
for stddev_type in stddev_types:
... | [
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"... | 37.956522 | 18.304348 |
def unpack_reply(cls, header, payload):
"""Take already unpacked header and binary payload of received request reply and creates message instance
:param header: a namedtuple header object providing header information
:param payload: payload (BytesIO instance) of message
"""
reply... | [
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def reset(self):
"""Resets the iterator to the beginning of the data."""
self.curr_idx = 0
#shuffle data in each bucket
random.shuffle(self.idx)
for i, buck in enumerate(self.sentences):
self.indices[i], self.sentences[i], self.characters[i], self.label[i] = shuffle(s... | [
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def convolve_image(self, image_array, blurring_array):
"""For a given 1D regular array and blurring array, convolve the two using this convolver.
Parameters
-----------
image_array : ndarray
1D array of the regular values which are to be blurred with the convolver's PSF.
... | [
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"image_frame_le... | 57.307692 | 30.769231 |
def _read_requirements(filename, extra_packages):
"""Returns a list of package requirements read from the file."""
requirements_file = open(filename).read()
hard_requirements = []
for line in requirements_file.splitlines():
if _is_requirement(line):
if line.find(';') > -1:
... | [
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... | 41.692308 | 13.230769 |
def assert_create_update_delete_permission(f):
"""Access only by subjects with Create/Update/Delete permission and by trusted
infrastructure (CNs)."""
@functools.wraps(f)
def wrapper(request, *args, **kwargs):
d1_gmn.app.auth.assert_create_update_delete_permission(request)
return f(requ... | [
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"assert_c... | 35.2 | 16 |
def normalize_rgb(r, g, b, a):
"""Transform a rgb[a] color to #hex[a].
"""
r = int(r, 10)
g = int(g, 10)
b = int(b, 10)
if a:
a = float(a) * 256
if r > 255 or g > 255 or b > 255 or (a and a > 255):
return None
color = '#%02x%02x%02x' % (r, g, b)
if a:
color +=... | [
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def get_net(req):
"""Get the net of any 'next' and 'prev' querystrings."""
try:
nxt, prev = map(
int, (req.GET.get('cal_next', 0), req.GET.get('cal_prev', 0))
)
net = nxt - prev
except Exception:
net = 0
return net | [
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... | 26.5 | 22.1 |
def set_extension(self, name, value):
"""
Sets the value for an extension using a fully constructed
asn1crypto.core.Asn1Value object. Normally this should not be needed,
and the convenience attributes should be sufficient.
See the definition of asn1crypto.ocsp.SingleResponseExte... | [
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... | 35.192 | 19.896 |
def get_splits_in_period(self, start: Datum, end: Datum) -> List[Split]:
""" returns splits only up to the given date """
# from gnucash_portfolio.lib import generic
query = (
self.book.session.query(Split)
.join(Transaction)
.filter(Split.account == self.acc... | [
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... | 38.357143 | 17.071429 |
def findSensor(self, sensors, sensor_name, device_type = None):
"""
Find a sensor in the provided list of sensors
@param sensors (list) - List of sensors to search in
@param sensor_name (string) - Name of sensor to find
@param device_type (strin... | [
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... | 38.904762 | 20.333333 |
def send_group_file(self, sender, receiver, media_id):
"""
发送群聊文件消息
:param sender: 发送人
:param receiver: 会话 ID
:param media_id: 文件id,可以调用上传素材文件接口获取, 文件须大于4字节
:return: 返回的 JSON 数据包
"""
return self.send_file(sender, 'group', receiver, media_id) | [
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def _get_roles_for_request(request, application):
""" Check the authentication of the current user. """
roles = application.get_roles_for_person(request.user)
if common.is_admin(request):
roles.add("is_admin")
roles.add('is_authorised')
return roles | [
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def clear_socket(self):
'''
delete socket if you have it
'''
if hasattr(self, '_socket'):
if isinstance(self.poller.sockets, dict):
sockets = list(self.poller.sockets.keys())
for socket in sockets:
log.trace('Unregistering s... | [
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... | 39.6 | 15.6 |
def listen_tta(self, target, timeout):
"""Listen *timeout* seconds for a Type A activation at 106 kbps. The
``sens_res``, ``sdd_res``, and ``sel_res`` response data must
be provided and ``sdd_res`` must be a 4 byte UID that starts
with ``08h``. Depending on ``sel_res`` an activation may
... | [
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def update_routing_table_from(self, *routers):
""" Try to update routing tables with the given routers.
:return: True if the routing table is successfully updated, otherwise False
"""
for router in routers:
new_routing_table = self.fetch_routing_table(router)
if ... | [
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def _validate_type(self): # type: () -> None
"""Validation to ensure value is the correct type"""
if not isinstance(self._value, self._type):
title = '{} has an invalid type'.format(self._key_name())
description = '{} must be a {}'.format(self._key_name(), self._type.__name__)
... | [
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def add_dockwidget(self, child):
"""Add QDockWidget and toggleViewAction"""
dockwidget, location = child.create_dockwidget()
if CONF.get('main', 'vertical_dockwidget_titlebars'):
dockwidget.setFeatures(dockwidget.features()|
QDockWidget.DockWid... | [
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"setF... | 52.75 | 13.875 |
def get_bad_rows_and_cols(df, validation_names, type_col_names,
value_col_names, verbose=False):
"""
Input: validated DataFrame, all validation names, names of the type columns,
names of the value columns, verbose (True or False).
Output: list of rows with bad values, list of c... | [
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def _read_result(self):
"""Parse read a response from the AGI and parse it.
:return dict: The AGI response parsed into a dict.
"""
response = yield from self.reader.readline()
return parse_agi_result(response.decode(self.encoding)[:-1]) | [
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... | 38.714286 | 16.428571 |
def options(self, context, module_options):
'''
LHOST IP hosting the handler
LPORT Handler port
PAYLOAD Payload to inject: reverse_http or reverse_https (default: reverse_https)
PROCID Process ID to inject into (default: current powershell process)
... | [
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"module_opti... | 36.4 | 23.84 |
def _em_conversion(orig_units, conv_data, to_units=None, unit_system=None):
"""Convert between E&M & MKS base units.
If orig_units is a CGS (or MKS) E&M unit, conv_data contains the
corresponding MKS (or CGS) unit and scale factor converting between them.
This must be done by replacing the expression o... | [
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def pre_dissect(self, s):
"""
Decrypt, verify and decompress the message.
"""
if len(s) < 5:
raise Exception("Invalid record: header is too short.")
if isinstance(self.tls_session.rcs.cipher, Cipher_NULL):
self.deciphered_len = None
return s
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... | 36.5 | 15.375 |
def get_checksum_by_target(self, target):
""" returns a checksum of a specific kind """
for csum in self.checksums:
if csum.target == target:
return csum
return None | [
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] | 35.333333 | 7.166667 |
def calculateOptionPrice(self, reqId, contract, volatility, underPrice):
"""calculateOptionPrice(EClient self, TickerId reqId, Contract contract, double volatility, double underPrice)"""
return _swigibpy.EClient_calculateOptionPrice(self, reqId, contract, volatility, underPrice) | [
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"underPrice... | 97.666667 | 30.666667 |
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