kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def get_first_part_id_for_assessment(assessment_id, runtime=None, proxy=None, create=False, bank_id=None): """Gets the first part id, which represents the first section, of assessment""" if create and bank_id is None: raise NullArgument('Bank Id must be provided for create option') try: retu...	[ "def", "get_first_part_id_for_assessment", "(", "assessment_id", ",", "runtime", "=", "None", ",", "proxy", "=", "None", ",", "create", "=", "False", ",", "bank_id", "=", "None", ")", ":", "if", "create", "and", "bank_id", "is", "None", ":", "raise", "Null...	49.909091	28.909091
def make_logger(name, stream_type, jobs): """Create a logger component. :param name: name of logger child, i.e. logger will be named `noodles.<name>`. :type name: str :param stream_type: type of the stream that this logger will be inserted into, should be \|pull_map\| or \|push_map\|. :...	[ "def", "make_logger", "(", "name", ",", "stream_type", ",", "jobs", ")", ":", "logger", "=", "logging", ".", "getLogger", "(", "'noodles'", ")", ".", "getChild", "(", "name", ")", "# logger.setLevel(logging.DEBUG)", "@", "stream_type", "def", "log_message", "(...	34.346939	19.489796
def _tile(self, n): """Get the update tile surrounding particle `n` """ pos = self._trans(self.pos[n]) return Tile(pos, pos).pad(self.support_pad)	[ "def", "_tile", "(", "self", ",", "n", ")", ":", "pos", "=", "self", ".", "_trans", "(", "self", ".", "pos", "[", "n", "]", ")", "return", "Tile", "(", "pos", ",", "pos", ")", ".", "pad", "(", "self", ".", "support_pad", ")" ]	41.75	8.5
def _map_purchase_request_to_func(self, purchase_request_type): """Provides appropriate parameters to the on_purchase functions.""" if purchase_request_type in self._intent_view_funcs: view_func = self._intent_view_funcs[purchase_request_type] else: raise NotImpl...	[ "def", "_map_purchase_request_to_func", "(", "self", ",", "purchase_request_type", ")", ":", "if", "purchase_request_type", "in", "self", ".", "_intent_view_funcs", ":", "view_func", "=", "self", ".", "_intent_view_funcs", "[", "purchase_request_type", "]", "else", ":...	52.214286	30.714286
def start(self): """ Start a producer/consumer service """ component = Component(self.config, self.handlers) component.run()	[ "def", "start", "(", "self", ")", ":", "component", "=", "Component", "(", "self", ".", "config", ",", "self", ".", "handlers", ")", "component", ".", "run", "(", ")" ]	26.5	9.833333
def replace_header(self, _name, _value): """Replace a header. Replace the first matching header found in the message, retaining header order and case. If no matching header was found, a KeyError is raised. """ _name = _name.lower() for i, (k, v) in zip(range(len...	[ "def", "replace_header", "(", "self", ",", "_name", ",", "_value", ")", ":", "_name", "=", "_name", ".", "lower", "(", ")", "for", "i", ",", "(", "k", ",", "v", ")", "in", "zip", "(", "range", "(", "len", "(", "self", ".", "_headers", ")", ")",...	37.285714	19.5
def zs_to_ws(zs, MWs): r'''Converts a list of mole fractions to mass fractions. Requires molecular weights for all species. .. math:: w_i = \frac{z_i MW_i}{MW_{avg}} MW_{avg} = \sum_i z_i MW_i Parameters ---------- zs : iterable Mole fractions [-] MWs : iterable ...	[ "def", "zs_to_ws", "(", "zs", ",", "MWs", ")", ":", "Mavg", "=", "sum", "(", "zi", "", "MWi", "for", "zi", ",", "MWi", "in", "zip", "(", "zs", ",", "MWs", ")", ")", "ws", "=", "[", "zi", "", "MWi", "/", "Mavg", "for", "zi", ",", "MWi", ...	21.882353	24.058824
def get_allow_repeat_items_metadata(self): """get the metadata for allow repeat items""" metadata = dict(self._allow_repeat_items_metadata) metadata.update({'existing_id_values': self.my_osid_object_form._my_map['allowRepeatItems']}) return Metadata(**metadata)	[ "def", "get_allow_repeat_items_metadata", "(", "self", ")", ":", "metadata", "=", "dict", "(", "self", ".", "_allow_repeat_items_metadata", ")", "metadata", ".", "update", "(", "{", "'existing_id_values'", ":", "self", ".", "my_osid_object_form", ".", "_my_map", "...	57.8	17.2
def _processEscapeSequences(replaceText): """Replace symbols like \n \\, etc """ def _replaceFunc(escapeMatchObject): char = escapeMatchObject.group(0)[1] if char in _escapeSequences: return _escapeSequences[char] return escapeMatchObject.group(0) # no any replacements,...	[ "def", "_processEscapeSequences", "(", "replaceText", ")", ":", "def", "_replaceFunc", "(", "escapeMatchObject", ")", ":", "char", "=", "escapeMatchObject", ".", "group", "(", "0", ")", "[", "1", "]", "if", "char", "in", "_escapeSequences", ":", "return", "_...	35.272727	13.727273
def _get_retention_policy_value(self): """ Sets the deletion policy on this resource. The default is 'Retain'. :return: value for the DeletionPolicy attribute. """ if self.RetentionPolicy is None or self.RetentionPolicy.lower() == self.RETAIN.lower(): return self.RE...	[ "def", "_get_retention_policy_value", "(", "self", ")", ":", "if", "self", ".", "RetentionPolicy", "is", "None", "or", "self", ".", "RetentionPolicy", ".", "lower", "(", ")", "==", "self", ".", "RETAIN", ".", "lower", "(", ")", ":", "return", "self", "."...	49.2	26.666667
def render_category_averages(obj, normalize_to=100): """Renders all the sub-averages for each category.""" context = {'reviewed_item': obj} ctype = ContentType.objects.get_for_model(obj) reviews = models.Review.objects.filter( content_type=ctype, object_id=obj.id) category_averages = {} ...	[ "def", "render_category_averages", "(", "obj", ",", "normalize_to", "=", "100", ")", ":", "context", "=", "{", "'reviewed_item'", ":", "obj", "}", "ctype", "=", "ContentType", ".", "objects", ".", "get_for_model", "(", "obj", ")", "reviews", "=", "models", ...	47.225806	15.387097
def run_in_order(l, show_output=True, show_err=True, ignore_err=False, args=(), *kwargs): ''' Processes each element of l in order: if it is a string: execute it as a shell command elif it is a callable, call it with args, **kwargs l-->list: Each elem is either a string (...	[ "def", "run_in_order", "(", "l", ",", "show_output", "=", "True", ",", "show_err", "=", "True", ",", "ignore_err", "=", "False", ",", "args", "=", "(", ")", ",", "", "", "kwargs", ")", ":", "# Set defaults", "if", "show_output", "is", "None", ":", ...	39.782609	19.086957
def path(self, which=None): """Extend ``nailgun.entity_mixins.Entity.path``. The format of the returned path depends on the value of ``which``: smart_class_parameters /api/puppetclasses/:puppetclass_id/smart_class_parameters Otherwise, call ``super``. """ i...	[ "def", "path", "(", "self", ",", "which", "=", "None", ")", ":", "if", "which", "in", "(", "'smart_class_parameters'", ",", "'smart_variables'", ")", ":", "return", "'{0}/{1}'", ".", "format", "(", "super", "(", "PuppetClass", ",", "self", ")", ".", "pat...	34.25	19.9375
def process_mavlink_packet(self, m): '''handle an incoming mavlink packet''' mtype = m.get_type() # if you add processing for an mtype here, remember to add it # to mavlink_packet, above if mtype in ['WAYPOINT_COUNT','MISSION_COUNT']: if (self.num_wps_expected == 0):...	[ "def", "process_mavlink_packet", "(", "self", ",", "m", ")", ":", "mtype", "=", "m", ".", "get_type", "(", ")", "# if you add processing for an mtype here, remember to add it", "# to mavlink_packet, above", "if", "mtype", "in", "[", "'WAYPOINT_COUNT'", ",", "'MISSION_CO...	51.15	21.05
def describe_identity_pools(IdentityPoolName, IdentityPoolId=None, region=None, key=None, keyid=None, profile=None): ''' Given an identity pool name, (optionally if an identity pool id is given, the given name will be ignored) Returns a list of matched identity pool name's pool properti...	[ "def", "describe_identity_pools", "(", "IdentityPoolName", ",", "IdentityPoolId", "=", "None", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", "conn", "=", "_get_conn", "(", "region", ...	34.242424	27.69697
def recursive_symlink_dirs(source_d, destination_d): ''' Create dirs and symlink all files recursively from source_d, ignoring errors (e.g. existing files) ''' func = os.symlink if os.name == 'nt': # NOTE: need to verify that default perms only allow admins to create # symlinks o...	[ "def", "recursive_symlink_dirs", "(", "source_d", ",", "destination_d", ")", ":", "func", "=", "os", ".", "symlink", "if", "os", ".", "name", "==", "'nt'", ":", "# NOTE: need to verify that default perms only allow admins to create", "# symlinks on Windows", "func", "="...	36.846154	19.461538
def intuition(args): ''' Main simulation wrapper Load the configuration, run the engine and return the analyze. ''' # Use the provided context builder to fill: # - config: General behavior # - strategy: Modules properties # - market: The universe we will trade on with setup.Co...	[ "def", "intuition", "(", "args", ")", ":", "# Use the provided context builder to fill:", "# - config: General behavior", "# - strategy: Modules properties", "# - market: The universe we will trade on", "with", "setup", ".", "Context", "(", "args", "[", "'context'", "]", ...	35.977273	16.613636
def instance_norm(attrs, inputs, proto_obj): """Instance Normalization.""" new_attrs = translation_utils._fix_attribute_names(attrs, {'epsilon' : 'eps'}) new_attrs['eps'] = attrs.get('epsilon', 1e-5) return 'InstanceNorm', new_attrs, inputs	[ "def", "instance_norm", "(", "attrs", ",", "inputs", ",", "proto_obj", ")", ":", "new_attrs", "=", "translation_utils", ".", "_fix_attribute_names", "(", "attrs", ",", "{", "'epsilon'", ":", "'eps'", "}", ")", "new_attrs", "[", "'eps'", "]", "=", "attrs", ...	50.4	11.8
def callAfter(func, args, *kwargs): """call a function on the main thread (async)""" pool = NSAutoreleasePool.alloc().init() obj = PyObjCAppHelperCaller_wrap.alloc().initWithArgs_((func, args, kwargs)) obj.callAfter_(None) del obj del pool	[ "def", "callAfter", "(", "func", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "pool", "=", "NSAutoreleasePool", ".", "alloc", "(", ")", ".", "init", "(", ")", "obj", "=", "PyObjCAppHelperCaller_wrap", ".", "alloc", "(", ")", ".", "initWithArgs_...	37	17
def touch_log(log, cwd='.'): """ Touches the log file. Creates if not exists OR updates the modification date if exists. :param log: :return: nothing """ logfile = '%s/%s' % (cwd, log) with open(logfile, 'a'): os.utime(logfile, None)	[ "def", "touch_log", "(", "log", ",", "cwd", "=", "'.'", ")", ":", "logfile", "=", "'%s/%s'", "%", "(", "cwd", ",", "log", ")", "with", "open", "(", "logfile", ",", "'a'", ")", ":", "os", ".", "utime", "(", "logfile", ",", "None", ")" ]	27	16.111111
def _cache_metrics_metadata(self, instance): """ Get all the performance counters metadata meaning name/group/description... from the server instance, attached with the corresponding ID """ # ## <TEST-INSTRUMENTATION> t = Timer() # ## </TEST-INSTRUMENTATION> ...	[ "def", "_cache_metrics_metadata", "(", "self", ",", "instance", ")", ":", "# ## <TEST-INSTRUMENTATION>", "t", "=", "Timer", "(", ")", "# ## </TEST-INSTRUMENTATION>", "i_key", "=", "self", ".", "_instance_key", "(", "instance", ")", "self", ".", "metadata_cache", "...	52.690476	28.833333
def mutual_info_score(self, reference_clusters): """ Calculates the MI (mutual information) w.r.t. the reference clusters (explicit evaluation) :param reference_clusters: Clusters that are to be used as reference :return: The resulting MI score. """ return mutual_info_sc...	[ "def", "mutual_info_score", "(", "self", ",", "reference_clusters", ")", ":", "return", "mutual_info_score", "(", "self", ".", "get_labels", "(", "self", ")", ",", "self", ".", "get_labels", "(", "reference_clusters", ")", ")" ]	47	24.25
def get_doc(self, objtxt): """Get object documentation dictionary""" obj, valid = self._eval(objtxt) if valid: return getdoc(obj)	[ "def", "get_doc", "(", "self", ",", "objtxt", ")", ":", "obj", ",", "valid", "=", "self", ".", "_eval", "(", "objtxt", ")", "if", "valid", ":", "return", "getdoc", "(", "obj", ")" ]	33	9
def idxmax(self,skipna=True, axis=0): """ Get the index of the max value in a column or row :param bool skipna: If True (default), then NAs are ignored during the search. Otherwise presence of NAs renders the entire result NA. :param int axis: Direction of finding the max in...	[ "def", "idxmax", "(", "self", ",", "skipna", "=", "True", ",", "axis", "=", "0", ")", ":", "return", "H2OFrame", ".", "_expr", "(", "expr", "=", "ExprNode", "(", "\"which.max\"", ",", "self", ",", "skipna", ",", "axis", ")", ")" ]	67.923077	39
def bind_top_down(lower, upper, __fval=None, **fval): """Bind 2 layers for building. When the upper layer is added as a payload of the lower layer, all the arguments # noqa: E501 will be applied to them. ex: >>> bind_top_down(Ether, SNAP, type=0x1234) >>> Ether()/SNAP() <Ether ...	[ "def", "bind_top_down", "(", "lower", ",", "upper", ",", "__fval", "=", "None", ",", "", "", "fval", ")", ":", "if", "__fval", "is", "not", "None", ":", "fval", ".", "update", "(", "__fval", ")", "upper", ".", "_overload_fields", "=", "upper", ".",...	35.285714	16.214286
def build_filter(self, filter): """ Tries to build a :class:`filter.Filter` instance from the given filter. Raises ValueError if the :class:`filter.Filter` object can't be build from the given filter. """ try: self.filter = Filter.from_string(filter, self.lim...	[ "def", "build_filter", "(", "self", ",", "filter", ")", ":", "try", ":", "self", ".", "filter", "=", "Filter", ".", "from_string", "(", "filter", ",", "self", ".", "limit", ")", "except", "ValueError", ":", "raise", "return", "self" ]	29	21.923077
def notification_message(self, title, content, icon=""): """This function sends "javascript" message to the client, that executes its content. In this particular code, a notification message is shown """ code = """ var options = { body: "%(content)s", ...	[ "def", "notification_message", "(", "self", ",", "title", ",", "content", ",", "icon", "=", "\"\"", ")", ":", "code", "=", "\"\"\"\n var options = {\n body: \"%(content)s\",\n icon: \"%(icon)s\"\n }\n if (!(\"Notification...	45	15.181818
def files(self): """Return list of files in root directory""" self._printer('\tFiles Walk') for directory in self.directory: for path in os.listdir(directory): full_path = os.path.join(directory, path) if os.path.isfile(full_path): ...	[ "def", "files", "(", "self", ")", ":", "self", ".", "_printer", "(", "'\\tFiles Walk'", ")", "for", "directory", "in", "self", ".", "directory", ":", "for", "path", "in", "os", ".", "listdir", "(", "directory", ")", ":", "full_path", "=", "os", ".", ...	43.3	8.3
def go_to_line(self): """ Moves current Script_Editor_tabWidget Widget tab Model editor cursor to user defined line. :return: Method success. :rtype: bool :note: May require user interaction. """ editor = self.get_current_editor() if not editor: ...	[ "def", "go_to_line", "(", "self", ")", ":", "editor", "=", "self", ".", "get_current_editor", "(", ")", "if", "not", "editor", ":", "return", "False", "line", ",", "state", "=", "QInputDialog", ".", "getInt", "(", "self", ",", "\"Goto Line Number\"", ",", ...	28.35	23.05
def _begin_write(session: UpdateSession, loop: asyncio.AbstractEventLoop, rootfs_file_path: str): """ Start the write process. """ session.set_progress(0) session.set_stage(Stages.WRITING) write_future = asyncio.ensure_future(loop.run_in_executor( None, file_act...	[ "def", "_begin_write", "(", "session", ":", "UpdateSession", ",", "loop", ":", "asyncio", ".", "AbstractEventLoop", ",", "rootfs_file_path", ":", "str", ")", ":", "session", ".", "set_progress", "(", "0", ")", "session", ".", "set_stage", "(", "Stages", ".",...	34.473684	14.263158
def pictures(self): """list[Picture]: List of embedded pictures""" return [b for b in self.metadata_blocks if b.code == Picture.code]	[ "def", "pictures", "(", "self", ")", ":", "return", "[", "b", "for", "b", "in", "self", ".", "metadata_blocks", "if", "b", ".", "code", "==", "Picture", ".", "code", "]" ]	36.75	23.75
def snooze(self, requester, duration): """Snooze incident. :param requester: The email address of the individual requesting snooze. """ path = '{0}/{1}/{2}'.format(self.collection.name, self.id, 'snooze') data = {"duration": duration} extra_headers = {"From": requester} ...	[ "def", "snooze", "(", "self", ",", "requester", ",", "duration", ")", ":", "path", "=", "'{0}/{1}/{2}'", ".", "format", "(", "self", ".", "collection", ".", "name", ",", "self", ".", "id", ",", "'snooze'", ")", "data", "=", "{", "\"duration\"", ":", ...	52.125	18.625
def lines_from_file(path, as_interned=False, encoding=None): """ Create a list of file lines from a given filepath. Args: path (str): File path as_interned (bool): List of "interned" strings (default False) Returns: strings (list): File line list """ lines = None wi...	[ "def", "lines_from_file", "(", "path", ",", "as_interned", "=", "False", ",", "encoding", "=", "None", ")", ":", "lines", "=", "None", "with", "io", ".", "open", "(", "path", ",", "encoding", "=", "encoding", ")", "as", "f", ":", "if", "as_interned", ...	28.555556	19.333333
def normalized_mutation_entropy(counts, total_cts=None): """Calculate the normalized mutation entropy based on a list/array of mutation counts. Note: Any grouping of mutation counts together should be done before hand Parameters ---------- counts : np.array_like array/list of mutation ...	[ "def", "normalized_mutation_entropy", "(", "counts", ",", "total_cts", "=", "None", ")", ":", "cts", "=", "np", ".", "asarray", "(", "counts", ",", "dtype", "=", "float", ")", "if", "total_cts", "is", "None", ":", "total_cts", "=", "np", ".", "sum", "(...	27.074074	18.740741
def getName(self): r""" Returns the results name for this token expression. Useful when several different expressions might match at a particular location. Example:: integer = Word(nums) ssn_expr = Regex(r"\d\d\d-\d\d-\d\d\d\d") house_number_expr = S...	[ "def", "getName", "(", "self", ")", ":", "if", "self", ".", "__name", ":", "return", "self", ".", "__name", "elif", "self", ".", "__parent", ":", "par", "=", "self", ".", "__parent", "(", ")", "if", "par", ":", "return", "par", ".", "__lookup", "("...	32.179487	18.358974
def getWifiInfo(self, wifiInterfaceId=1, timeout=1): """Execute GetInfo action to get Wifi basic information's. :param int wifiInterfaceId: the id of the Wifi interface :param float timeout: the timeout to wait for the action to be executed :return: the basic informations :rtype...	[ "def", "getWifiInfo", "(", "self", ",", "wifiInterfaceId", "=", "1", ",", "timeout", "=", "1", ")", ":", "namespace", "=", "Wifi", ".", "getServiceType", "(", "\"getWifiInfo\"", ")", "+", "str", "(", "wifiInterfaceId", ")", "uri", "=", "self", ".", "getC...	40.785714	20.285714
def _compute_log_acceptance_correction(current_state_parts, proposed_state_parts, current_volatility_parts, proposed_volatility_parts, current_drift_parts, ...	[ "def", "_compute_log_acceptance_correction", "(", "current_state_parts", ",", "proposed_state_parts", ",", "current_volatility_parts", ",", "proposed_volatility_parts", ",", "current_drift_parts", ",", "proposed_drift_parts", ",", "step_size_parts", ",", "independent_chain_ndims", ...	40.860656	23.081967
def namedb_get_names_owned_by_address( cur, address, current_block ): """ Get the list of non-expired, non-revoked names owned by an address. Only works if there is a singular address for the name. """ unexpired_fragment, unexpired_args = namedb_select_where_unexpired_names( current_block ) ...	[ "def", "namedb_get_names_owned_by_address", "(", "cur", ",", "address", ",", "current_block", ")", ":", "unexpired_fragment", ",", "unexpired_args", "=", "namedb_select_where_unexpired_names", "(", "current_block", ")", "select_query", "=", "\"SELECT name FROM name_records JO...	36.5	29.136364
def get_by_code(self, code): """ Retrieve a language by a code. :param code: iso code (any of the three) or its culture code :return: a Language object """ if any(x in code for x in ('_', '-')): cc = CultureCode.objects.get(code=code.replace('_', '-')) ...	[ "def", "get_by_code", "(", "self", ",", "code", ")", ":", "if", "any", "(", "x", "in", "code", "for", "x", "in", "(", "'_'", ",", "'-'", ")", ")", ":", "cc", "=", "CultureCode", ".", "objects", ".", "get", "(", "code", "=", "code", ".", "replac...	32.666667	17.238095
def build(self, text): """ :param text: Content of the paragraph """ super(Paragraph, self).build() self.content = text	[ "def", "build", "(", "self", ",", "text", ")", ":", "super", "(", "Paragraph", ",", "self", ")", ".", "build", "(", ")", "self", ".", "content", "=", "text" ]	25.666667	6.333333
def loop_check(self): """Check if we have a loop in the graph :return: Nodes in loop :rtype: list """ in_loop = [] # Add the tag for dfs check for node in list(self.nodes.values()): node['dfs_loop_status'] = 'DFS_UNCHECKED' # Now do the job ...	[ "def", "loop_check", "(", "self", ")", ":", "in_loop", "=", "[", "]", "# Add the tag for dfs check", "for", "node", "in", "list", "(", "self", ".", "nodes", ".", "values", "(", ")", ")", ":", "node", "[", "'dfs_loop_status'", "]", "=", "'DFS_UNCHECKED'", ...	32.2	15.96
def get_all_memberships( self, limit_to=100, max_calls=None, parameters=None, since_when=None, start_record=0, verbose=False): """ Retrieve all memberships updated since "since_when" Loop over queries of size limit_to until either a non-full queryset is returned,...	[ "def", "get_all_memberships", "(", "self", ",", "limit_to", "=", "100", ",", "max_calls", "=", "None", ",", "parameters", "=", "None", ",", "since_when", "=", "None", ",", "start_record", "=", "0", ",", "verbose", "=", "False", ")", ":", "if", "not", "...	36.511628	20.093023
def accel_toggle_transparency(self, *args): """Callback to toggle transparency. """ self.transparency_toggled = not self.transparency_toggled self.settings.styleBackground.triggerOnChangedValue( self.settings.styleBackground, 'transparency' ) return True	[ "def", "accel_toggle_transparency", "(", "self", ",", "*", "args", ")", ":", "self", ".", "transparency_toggled", "=", "not", "self", ".", "transparency_toggled", "self", ".", "settings", ".", "styleBackground", ".", "triggerOnChangedValue", "(", "self", ".", "s...	38.375	14.625
def explore_server(server_url, username, password): """ Demo of exploring a cim server for characteristics defined by the server class """ print("WBEM server URL:\n %s" % server_url) conn = WBEMConnection(server_url, (username, password), no_verification=True) se...	[ "def", "explore_server", "(", "server_url", ",", "username", ",", "password", ")", ":", "print", "(", "\"WBEM server URL:\\n %s\"", "%", "server_url", ")", "conn", "=", "WBEMConnection", "(", "server_url", ",", "(", "username", ",", "password", ")", ",", "no_...	34.449275	16.623188
def replace_bytes(self, m): """Replace escapes.""" esc = m.group(0) value = esc if m.group('special'): value = BACK_SLASH_TRANSLATION[esc] elif m.group('char'): try: value = chr(int(esc[2:], 16)) except Exception: ...	[ "def", "replace_bytes", "(", "self", ",", "m", ")", ":", "esc", "=", "m", ".", "group", "(", "0", ")", "value", "=", "esc", "if", "m", ".", "group", "(", "'special'", ")", ":", "value", "=", "BACK_SLASH_TRANSLATION", "[", "esc", "]", "elif", "m", ...	28.5	12.5
def get_sshconfig(): r''' Read user's SSH configuration file ''' with open(os.path.expanduser('~/.ssh/config')) as f: cfg = paramiko.SSHConfig() cfg.parse(f) ret_dict = {} for d in cfg._config: _copy = dict(d) # Avoid buggy behavior with strange h...	[ "def", "get_sshconfig", "(", ")", ":", "with", "open", "(", "os", ".", "path", ".", "expanduser", "(", "'~/.ssh/config'", ")", ")", "as", "f", ":", "cfg", "=", "paramiko", ".", "SSHConfig", "(", ")", "cfg", ".", "parse", "(", "f", ")", "ret_dict", ...	27.944444	18.388889
def circuit_to_pdf_using_qcircuit_via_tex(circuit: circuits.Circuit, filepath: str, pdf_kwargs=None, qcircuit_kwargs=None, clean_ext=('dvi', 'ps'), ...	[ "def", "circuit_to_pdf_using_qcircuit_via_tex", "(", "circuit", ":", "circuits", ".", "Circuit", ",", "filepath", ":", "str", ",", "pdf_kwargs", "=", "None", ",", "qcircuit_kwargs", "=", "None", ",", "clean_ext", "=", "(", "'dvi'", ",", "'ps'", ")", ",", "do...	48.205882	16.882353
def read_contents(self, name, conn): '''Read schema tables''' sql = '''select c.relname, d.description, case c.relkind when 'r' then 'table' when 'v' then 'view' when 'm' then 'm...	[ "def", "read_contents", "(", "self", ",", "name", ",", "conn", ")", ":", "sql", "=", "'''select c.relname,\n d.description,\n case c.relkind\n when 'r' then 'table'\n when 'v' then 'view'\n ...	45.413793	12.655172
def is_API_online(self): """ Returns True if the OWM Weather API is currently online. A short timeout is used to determine API service availability. :returns: bool """ params = {'q': 'London,GB'} uri = http_client.HttpClient.to_url(OBSERVATION_URL, ...	[ "def", "is_API_online", "(", "self", ")", ":", "params", "=", "{", "'q'", ":", "'London,GB'", "}", "uri", "=", "http_client", ".", "HttpClient", ".", "to_url", "(", "OBSERVATION_URL", ",", "self", ".", "_API_key", ",", "self", ".", "_subscription_type", ")...	35.411765	20
def shutdown(self): """ Signals worker to shutdown (via sentinel) then cleanly joins the thread """ self.shutdownLocal() newJobsQueue = self.newJobsQueue self.newJobsQueue = None newJobsQueue.put(None) self.worker.join()	[ "def", "shutdown", "(", "self", ")", ":", "self", ".", "shutdownLocal", "(", ")", "newJobsQueue", "=", "self", ".", "newJobsQueue", "self", ".", "newJobsQueue", "=", "None", "newJobsQueue", ".", "put", "(", "None", ")", "self", ".", "worker", ".", "join"...	27.6	14.4
def artifact_cache_dir(self): """Note that this is unrelated to the general pants artifact cache.""" return (self.get_options().artifact_cache_dir or os.path.join(self.scratch_dir, 'artifacts'))	[ "def", "artifact_cache_dir", "(", "self", ")", ":", "return", "(", "self", ".", "get_options", "(", ")", ".", "artifact_cache_dir", "or", "os", ".", "path", ".", "join", "(", "self", ".", "scratch_dir", ",", "'artifacts'", ")", ")" ]	52.75	9.75
def long_click(self): ''' Perform a long click action on the object. Usage: d(text="Image").long_click() # long click on the center of the ui object d(text="Image").long_click.topleft() # long click on the topleft of the ui object d(text="Image").long_click.bottomright(...	[ "def", "long_click", "(", "self", ")", ":", "@", "param_to_property", "(", "corner", "=", "[", "\"tl\"", ",", "\"topleft\"", ",", "\"br\"", ",", "\"bottomright\"", "]", ")", "def", "_long_click", "(", "corner", "=", "None", ")", ":", "info", "=", "self",...	48.448276	22.931034
def submit_file_content(self, method, url, data, headers, params, halt_on_error=True): """Submit File Content for Documents and Reports to ThreatConnect API. Args: method (str): The HTTP method for the request (POST, PUT). url (str): The URL for the request. data (st...	[ "def", "submit_file_content", "(", "self", ",", "method", ",", "url", ",", "data", ",", "headers", ",", "params", ",", "halt_on_error", "=", "True", ")", ":", "r", "=", "None", "try", ":", "r", "=", "self", ".", "tcex", ".", "session", ".", "request"...	45.15	26.4
def item(self): """ ToDo >>> from hydpy.core.examples import prepare_full_example_1 >>> prepare_full_example_1() >>> from hydpy import HydPy, TestIO, XMLInterface, pub >>> hp = HydPy('LahnH') >>> pub.timegrids = '1996-01-01', '1996-01-06', '1d' >>> with TestIO()...	[ "def", "item", "(", "self", ")", ":", "target", "=", "f'{self.master.name}.{self.name}'", "if", "self", ".", "master", ".", "name", "==", "'nodes'", ":", "master", "=", "self", ".", "master", ".", "name", "itemgroup", "=", "self", ".", "master", ".", "ma...	42.735537	20.826446
def can_add_lv_load_area(self, node): # TODO: check docstring """Sums up peak load of LV stations That is, total peak load for satellite string Args ---- node: GridDing0 Descr Returns ------- bool ...	[ "def", "can_add_lv_load_area", "(", "self", ",", "node", ")", ":", "# TODO: check docstring", "# get power factor for loads", "cos_phi_load", "=", "cfg_ding0", ".", "get", "(", "'assumptions'", ",", "'cos_phi_load'", ")", "lv_load_area", "=", "node", ".", "lv_load_are...	33.178571	24.214286
def _dump_query_timestamps(self, current_time: float): """Output the number of GraphQL queries grouped by their query_hash within the last time.""" windows = [10, 11, 15, 20, 30, 60] print("GraphQL requests:", file=sys.stderr) for query_hash, times in self._graphql_query_timestamps.items...	[ "def", "_dump_query_timestamps", "(", "self", ",", "current_time", ":", "float", ")", ":", "windows", "=", "[", "10", ",", "11", ",", "15", ",", "20", ",", "30", ",", "60", "]", "print", "(", "\"GraphQL requests:\"", ",", "file", "=", "sys", ".", "st...	68.666667	23.333333
def get_scores(self, args): ''' In this case, parameters a and b aren't used, since this information is taken directly from the corpus categories. Returns ------- ''' def jelinek_mercer_smoothing(cat): p_hat_w = self.tdf_[cat] 1. / self.tdf_[cat].sum() c_hat_w = (self.smoothing_lambda_) * self...	[ "def", "get_scores", "(", "self", ",", "", "args", ")", ":", "def", "jelinek_mercer_smoothing", "(", "cat", ")", ":", "p_hat_w", "=", "self", ".", "tdf_", "[", "cat", "]", "", "1.", "/", "self", ".", "tdf_", "[", "cat", "]", ".", "sum", "(", ")...	28.347826	26.086957
def set_secondary_vehicle_position(self, m): '''store second vehicle position for filtering purposes''' if m.get_type() != 'GLOBAL_POSITION_INT': return (lat, lon, heading) = (m.lat1.0e-7, m.lon1.0e-7, m.hdg*0.01) if abs(lat) < 1.0e-3 and abs(lon) < 1.0e-3: retu...	[ "def", "set_secondary_vehicle_position", "(", "self", ",", "m", ")", ":", "if", "m", ".", "get_type", "(", ")", "!=", "'GLOBAL_POSITION_INT'", ":", "return", "(", "lat", ",", "lon", ",", "heading", ")", "=", "(", "m", ".", "lat", "*", "1.0e-7", ",", ...	44.625	15.625
def get_ips(self, instance_id): """Retrieves all IP addresses associated to a given instance. :return: tuple (IPs) """ self._init_os_api() instance = self._load_instance(instance_id) try: ip_addrs = set([self.floating_ip]) except AttributeError: ...	[ "def", "get_ips", "(", "self", ",", "instance_id", ")", ":", "self", ".", "_init_os_api", "(", ")", "instance", "=", "self", ".", "_load_instance", "(", "instance_id", ")", "try", ":", "ip_addrs", "=", "set", "(", "[", "self", ".", "floating_ip", "]", ...	35.133333	13.8
def get_chebi_name_from_id(chebi_id, offline=False): """Return a ChEBI name corresponding to the given ChEBI ID. Parameters ---------- chebi_id : str The ChEBI ID whose name is to be returned. offline : Optional[bool] Choose whether to allow an online lookup if the local lookup fail...	[ "def", "get_chebi_name_from_id", "(", "chebi_id", ",", "offline", "=", "False", ")", ":", "chebi_name", "=", "chebi_id_to_name", ".", "get", "(", "chebi_id", ")", "if", "chebi_name", "is", "None", "and", "not", "offline", ":", "chebi_name", "=", "get_chebi_nam...	33.190476	19.47619
def _convert(x, factor1, factor2): """ Converts mixing ratio x in comp1 - comp2 tie line to that in c1 - c2 tie line. Args: x (float): Mixing ratio x in comp1 - comp2 tie line, a float between 0 and 1. factor1 (float): Compositional ratio between ...	[ "def", "_convert", "(", "x", ",", "factor1", ",", "factor2", ")", ":", "return", "x", "", "factor2", "/", "(", "(", "1", "-", "x", ")", "", "factor1", "+", "x", "*", "factor2", ")" ]	40.611111	21.611111
def sigmasq(htilde, psd = None, low_frequency_cutoff=None, high_frequency_cutoff=None): """Return the loudness of the waveform. This is defined (see Duncan Brown's thesis) as the unnormalized matched-filter of the input waveform, htilde, with itself. This quantity is usually referred to as (sigm...	[ "def", "sigmasq", "(", "htilde", ",", "psd", "=", "None", ",", "low_frequency_cutoff", "=", "None", ",", "high_frequency_cutoff", "=", "None", ")", ":", "htilde", "=", "make_frequency_series", "(", "htilde", ")", "N", "=", "(", "len", "(", "htilde", ")", ...	34.853659	20.853659
def get_tx_out(self, tx_hash, vout_id, id=None, endpoint=None): """ Gets a transaction output by specified transaction hash and output index Args: tx_hash: (str) hash in the form '58c634f81fbd4ae2733d7e3930a9849021840fc19dc6af064d6f2812a333f91d' vout_id: (int) index of th...	[ "def", "get_tx_out", "(", "self", ",", "tx_hash", ",", "vout_id", ",", "id", "=", "None", ",", "endpoint", "=", "None", ")", ":", "return", "self", ".", "_call_endpoint", "(", "GET_TX_OUT", ",", "params", "=", "[", "tx_hash", ",", "vout_id", "]", ",", ...	57.75	31.083333
def _to_dict(self): """Return a json dictionary representing this model.""" _dict = {} if hasattr(self, 'name') and self.name is not None: _dict['name'] = self.name if hasattr(self, 'description') and self.description is not None: _dict['description'] = self.descr...	[ "def", "_to_dict", "(", "self", ")", ":", "_dict", "=", "{", "}", "if", "hasattr", "(", "self", ",", "'name'", ")", "and", "self", ".", "name", "is", "not", "None", ":", "_dict", "[", "'name'", "]", "=", "self", ".", "name", "if", "hasattr", "(",...	54.405405	21.405405
def _normalize_options(self, options): """ Generator of 2-tuples (option-key, option-value). When options spec is a list, generate a 2-tuples per list item. :param options: dict {option: value} returns: iterator (option-key, option-value) - option names lowe...	[ "def", "_normalize_options", "(", "self", ",", "options", ")", ":", "for", "key", ",", "value", "in", "list", "(", "options", ".", "items", "(", ")", ")", ":", "if", "'--'", "in", "key", ":", "normalized_key", "=", "self", ".", "_normalize_arg", "(", ...	36.652174	17.26087
def prepare_to_generate(self, data_dir, tmp_dir): """Make sure that the data is prepared and the vocab is generated.""" self.get_or_create_vocab(data_dir, tmp_dir) self.train_text_filepaths(tmp_dir) self.dev_text_filepaths(tmp_dir)	[ "def", "prepare_to_generate", "(", "self", ",", "data_dir", ",", "tmp_dir", ")", ":", "self", ".", "get_or_create_vocab", "(", "data_dir", ",", "tmp_dir", ")", "self", ".", "train_text_filepaths", "(", "tmp_dir", ")", "self", ".", "dev_text_filepaths", "(", "t...	48.6	4.4
def smart_search(cls, query_string, search_options=None, extra_query = None): """ Perform a smart VRF search. Maps to the function :py:func:`nipap.backend.Nipap.smart_search_vrf` in the backend. Please see the documentation for the backend function for informatio...	[ "def", "smart_search", "(", "cls", ",", "query_string", ",", "search_options", "=", "None", ",", "extra_query", "=", "None", ")", ":", "if", "search_options", "is", "None", ":", "search_options", "=", "{", "}", "xmlrpc", "=", "XMLRPCConnection", "(", ")", ...	39.029412	17.794118
def downside_risk(returns, required_return=0, period=DAILY): """ Determines the downside deviation below a threshold Parameters ---------- returns : pd.Series or pd.DataFrame Daily returns of the strategy, noncumulative. - See full explanation in :func:`~pyfolio.timeseries.cum_retur...	[ "def", "downside_risk", "(", "returns", ",", "required_return", "=", "0", ",", "period", "=", "DAILY", ")", ":", "return", "ep", ".", "downside_risk", "(", "returns", ",", "required_return", "=", "required_return", ",", "period", "=", "period", ")" ]	30.142857	18.428571
def parse(self, url): """ Return a configuration dict from a URL """ parsed_url = urlparse.urlparse(url) try: default_config = self.CONFIG[parsed_url.scheme] except KeyError: raise ValueError( 'unrecognised URL scheme for {}: {}'.fo...	[ "def", "parse", "(", "self", ",", "url", ")", ":", "parsed_url", "=", "urlparse", ".", "urlparse", "(", "url", ")", "try", ":", "default_config", "=", "self", ".", "CONFIG", "[", "parsed_url", ".", "scheme", "]", "except", "KeyError", ":", "raise", "Va...	37	11.714286
def get_opcodes_from_bp_table(bp): """Given a 2d list structure, collect the opcodes from the best path.""" x = len(bp) - 1 y = len(bp[0]) - 1 opcodes = [] while x != 0 or y != 0: this_bp = bp[x][y] opcodes.append(this_bp) if this_bp[0] == EQUAL or this_bp[0] == REPLACE: ...	[ "def", "get_opcodes_from_bp_table", "(", "bp", ")", ":", "x", "=", "len", "(", "bp", ")", "-", "1", "y", "=", "len", "(", "bp", "[", "0", "]", ")", "-", "1", "opcodes", "=", "[", "]", "while", "x", "!=", "0", "or", "y", "!=", "0", ":", "thi...	29.294118	14.705882
def is_allowed(self, request: AxesHttpRequest, credentials: dict = None) -> bool: """ Checks if the user is allowed to access or use given functionality such as a login view or authentication. This method is abstract and other backends can specialize it as needed, but the default implementation...	[ "def", "is_allowed", "(", "self", ",", "request", ":", "AxesHttpRequest", ",", "credentials", ":", "dict", "=", "None", ")", "->", "bool", ":", "if", "self", ".", "is_blacklisted", "(", "request", ",", "credentials", ")", ":", "return", "False", "if", "s...	46.56	36.88
def a_list(label=None, kwargs=None, attributes=None): """Return assembled DOT a_list string. >>> a_list('spam', {'spam': None, 'ham': 'ham ham', 'eggs': ''}) 'label=spam eggs="" ham="ham ham"' """ result = ['label=%s' % quote(label)] if label is not None else [] if kwargs: items = ['%s=...	[ "def", "a_list", "(", "label", "=", "None", ",", "kwargs", "=", "None", ",", "attributes", "=", "None", ")", ":", "result", "=", "[", "'label=%s'", "%", "quote", "(", "label", ")", "]", "if", "label", "is", "not", "None", "else", "[", "]", "if", ...	39.055556	14.888889
def save(nifti_filename, numpy_data): """ Export a numpy array to a nifti file. TODO: currently using dummy headers and identity matrix affine transform. This can be expanded. Arguments: nifti_filename (str): A filename to which to save the nifti data numpy_data (numpy.ndarray): The nu...	[ "def", "save", "(", "nifti_filename", ",", "numpy_data", ")", ":", "# Expand filename to be absolute", "nifti_filename", "=", "os", ".", "path", ".", "expanduser", "(", "nifti_filename", ")", "try", ":", "nifti_img", "=", "nib", ".", "Nifti1Image", "(", "numpy_d...	34.272727	22.909091
def count(keys, axis=semantics.axis_default): """count the number of times each key occurs in the input set Arguments --------- keys : indexable object Returns ------- unique : ndarray, [groups, ...] unique keys count : ndarray, [groups], int the number of times each ke...	[ "def", "count", "(", "keys", ",", "axis", "=", "semantics", ".", "axis_default", ")", ":", "index", "=", "as_index", "(", "keys", ",", "axis", ",", "base", "=", "True", ")", "return", "index", ".", "unique", ",", "index", ".", "count" ]	26.142857	19.190476
def write_touchstone(fname, options, data, noise=None, frac_length=10, exp_length=2): r""" Write a `Touchstone`_ file. Parameter data is first resized to an :code:`points` x :code:`nports` x :code:`nports` where :code:`points` represents the number of frequency points and :code:`nports` represents ...	[ "def", "write_touchstone", "(", "fname", ",", "options", ",", "data", ",", "noise", "=", "None", ",", "frac_length", "=", "10", ",", "exp_length", "=", "2", ")", ":", "# pylint: disable=R0913", "# Exceptions definitions", "exnports", "=", "pexdoc", ".", "exh",...	36.261682	20.233645
def get_interpolation_function(self, times, series): """ Initializes interpolation model :param times: Array of reference times in second relative to the first timestamp :type times: numpy.array :param series: One dimensional array of time series :type series: numpy.array ...	[ "def", "get_interpolation_function", "(", "self", ",", "times", ",", "series", ")", ":", "return", "self", ".", "interpolation_object", "(", "times", ",", "series", ",", "", "", "self", ".", "interpolation_parameters", ")" ]	46	19.6
def update(self, options=None, attribute_options=None): """ Updates this mapping with the given option and attribute option maps. :param dict options: Maps representer options to their values. :param dict attribute_options: Maps attribute names to dictionaries mapping attribut...	[ "def", "update", "(", "self", ",", "options", "=", "None", ",", "attribute_options", "=", "None", ")", ":", "attr_map", "=", "self", ".", "__get_attribute_map", "(", "self", ".", "__mapped_cls", ",", "None", ",", "0", ")", "for", "attributes", "in", "att...	50.888889	18.777778
def update_configuration(app): """Update parameters which are dependent on information from the project-specific conf.py (including its location on the filesystem)""" config = app.config project = config.project config_dir = app.env.srcdir sys.path.insert(0, os.path.join(config_dir, '..')) ...	[ "def", "update_configuration", "(", "app", ")", ":", "config", "=", "app", ".", "config", "project", "=", "config", ".", "project", "config_dir", "=", "app", ".", "env", ".", "srcdir", "sys", ".", "path", ".", "insert", "(", "0", ",", "os", ".", "pat...	39.622642	19.433962
def morelikethis(self, index, doc_type, id, fields, **query_params): """ Execute a "more like this" search query against one or more fields and get back search hits. """ path = make_path(index, doc_type, id, '_mlt') query_params['mlt_fields'] = ','.join(fields) body = que...	[ "def", "morelikethis", "(", "self", ",", "index", ",", "doc_type", ",", "id", ",", "fields", ",", "", "", "query_params", ")", ":", "path", "=", "make_path", "(", "index", ",", "doc_type", ",", "id", ",", "'_mlt'", ")", "query_params", "[", "'mlt_fie...	55.625	22.875
def __checkSPKTimestamp(self): """ Check whether the SPK is too old and generate a new one in that case. """ if time.time() - self.__spk["timestamp"] > self.__spk_timeout: self.__generateSPK()	[ "def", "__checkSPKTimestamp", "(", "self", ")", ":", "if", "time", ".", "time", "(", ")", "-", "self", ".", "__spk", "[", "\"timestamp\"", "]", ">", "self", ".", "__spk_timeout", ":", "self", ".", "__generateSPK", "(", ")" ]	33	17.857143
def process(self): """ Loops over the underlying queue of events and processes them in order. """ assert self.queue is not None while True: event = self.queue.get() if self.pre_process_event(event): self.invoke_handlers(event) s...	[ "def", "process", "(", "self", ")", ":", "assert", "self", ".", "queue", "is", "not", "None", "while", "True", ":", "event", "=", "self", ".", "queue", ".", "get", "(", ")", "if", "self", ".", "pre_process_event", "(", "event", ")", ":", "self", "....	33.2	10.2
def purge_dict(idict): """Remove null items from a dictionary """ odict = {} for key, val in idict.items(): if is_null(val): continue odict[key] = val return odict	[ "def", "purge_dict", "(", "idict", ")", ":", "odict", "=", "{", "}", "for", "key", ",", "val", "in", "idict", ".", "items", "(", ")", ":", "if", "is_null", "(", "val", ")", ":", "continue", "odict", "[", "key", "]", "=", "val", "return", "odict" ...	25	15.75
def _generate_download_google_link(link): """ ----- Brief ----- Function that returns a direct download link of a file stored inside a Google Drive Repository. ----------- Description ----------- Generally a link from a Google Drive file is only for viewing purposes. If the...	[ "def", "_generate_download_google_link", "(", "link", ")", ":", "# Get file id.", "if", "\"id=\"", "not", "in", "link", ":", "# Split link into segments (split character --> /)", "split_link", "=", "link", ".", "split", "(", "\"/\"", ")", "file_id", "=", "split_link",...	26.568182	27.295455
def _open_fits_files(filenames): """ Given a {correlation: filename} mapping for filenames returns a {correlation: file handle} mapping """ kw = { 'mode' : 'update', 'memmap' : False } def _fh(fn): """ Returns a filehandle or None if file does not exist """ return fits.open(fn, ...	[ "def", "_open_fits_files", "(", "filenames", ")", ":", "kw", "=", "{", "'mode'", ":", "'update'", ",", "'memmap'", ":", "False", "}", "def", "_fh", "(", "fn", ")", ":", "\"\"\" Returns a filehandle or None if file does not exist \"\"\"", "return", "fits", ".", "...	34.5	14
def class_declaration(self, type_): """ Returns reference to the class declaration. """ utils.loggers.queries_engine.debug( "Container traits: searching class declaration for %s", type_) cls_declaration = self.get_container_or_none(type_) if not cls_declara...	[ "def", "class_declaration", "(", "self", ",", "type_", ")", ":", "utils", ".", "loggers", ".", "queries_engine", ".", "debug", "(", "\"Container traits: searching class declaration for %s\"", ",", "type_", ")", "cls_declaration", "=", "self", ".", "get_container_or_no...	32.2	16.866667
def filter_objects(self, objects, perm=None): """ Return only objects with specified permission in objects list. If perm not specified, 'view' perm will be used. """ if perm is None: perm = build_permission_name(self.model_class, 'view') return filter(lambda o: self.user.has_perm(per...	[ "def", "filter_objects", "(", "self", ",", "objects", ",", "perm", "=", "None", ")", ":", "if", "perm", "is", "None", ":", "perm", "=", "build_permission_name", "(", "self", ".", "model_class", ",", "'view'", ")", "return", "filter", "(", "lambda", "o", ...	67	16
def report(self): """Return a report about the pool state and configuration. :rtype: dict """ return { 'connections': { 'busy': len(self.busy_connections), 'closed': len(self.closed_connections), 'executing': len(self.executin...	[ "def", "report", "(", "self", ")", ":", "return", "{", "'connections'", ":", "{", "'busy'", ":", "len", "(", "self", ".", "busy_connections", ")", ",", "'closed'", ":", "len", "(", "self", ".", "closed_connections", ")", ",", "'executing'", ":", "len", ...	34.44	16.56
def to_python(self, data): """ Convert a data to python format. """ if data is None: return '' if isinstance(data, unicode): data = data.encode(DEFAULT_ENCODING) else: data = str(data) return data	[ "def", "to_python", "(", "self", ",", "data", ")", ":", "if", "data", "is", "None", ":", "return", "''", "if", "isinstance", "(", "data", ",", "unicode", ")", ":", "data", "=", "data", ".", "encode", "(", "DEFAULT_ENCODING", ")", "else", ":", "data",...	25.272727	10.909091
def open_data(self, text, colsep=u"\t", rowsep=u"\n", transpose=False, skiprows=0, comments='#'): """Open clipboard text as table""" if pd: self.pd_text = text self.pd_info = dict(sep=colsep, lineterminator=rowsep, skiprows=skiprows, commen...	[ "def", "open_data", "(", "self", ",", "text", ",", "colsep", "=", "u\"\\t\"", ",", "rowsep", "=", "u\"\\n\"", ",", "transpose", "=", "False", ",", "skiprows", "=", "0", ",", "comments", "=", "'#'", ")", ":", "if", "pd", ":", "self", ".", "pd_text", ...	52	18.75
def get_neighbor_sentence_ngrams( mention, d=1, attrib="words", n_min=1, n_max=1, lower=True ): """Get the ngrams that are in the neighoring Sentences of the given Mention. Note that if a candidate is passed in, all of its Mentions will be searched. :param mention: The Mention whose neighbor Sentences...	[ "def", "get_neighbor_sentence_ngrams", "(", "mention", ",", "d", "=", "1", ",", "attrib", "=", "\"words\"", ",", "n_min", "=", "1", ",", "n_max", "=", "1", ",", "lower", "=", "True", ")", ":", "spans", "=", "_to_spans", "(", "mention", ")", "for", "s...	41.37037	22.518519
def extend(*args): """shallow dictionary merge Args: a: dict to extend b: dict to apply to a Returns: new instance of the same type as _a_, with _a_ and _b_ merged. """ if not args: return {} first = args[0] rest = args[1:] out = type(first)(first) ...	[ "def", "extend", "(", "*", "args", ")", ":", "if", "not", "args", ":", "return", "{", "}", "first", "=", "args", "[", "0", "]", "rest", "=", "args", "[", "1", ":", "]", "out", "=", "type", "(", "first", ")", "(", "first", ")", "for", "each", ...	18.894737	22.052632
def _get_access_token(self): """Get access token using app_id, login and password OR service token (service token docs: https://vk.com/dev/service_token """ if self._service_token: logger.info('Use service token: %s', 5 * '*' + self._service_token[50:]...	[ "def", "_get_access_token", "(", "self", ")", ":", "if", "self", ".", "_service_token", ":", "logger", ".", "info", "(", "'Use service token: %s'", ",", "5", "", "''", "+", "self", ".", "_service_token", "[", "50", ":", "]", ")", "return", "self", ".",...	45	18.933333
def addTransitions(self, state, transitions): """ Create a new L{TransitionTable} with all the same transitions as this L{TransitionTable} plus a number of new transitions. @param state: The state for which the new transitions are defined. @param transitions: A L{dict} mapping i...	[ "def", "addTransitions", "(", "self", ",", "state", ",", "transitions", ")", ":", "table", "=", "self", ".", "_copy", "(", ")", "state", "=", "table", ".", "table", ".", "setdefault", "(", "state", ",", "{", "}", ")", "for", "(", "input", ",", "(",...	42.470588	21.294118
def _process(self, plugin, instance=None): """Produce `result` from `plugin` and `instance` :func:`process` shares state with :func:`_iterator` such that an instance/plugin pair can be fetched and processed in isolation. Arguments: plugin (pyblish.api.Plugin): Produce resul...	[ "def", "_process", "(", "self", ",", "plugin", ",", "instance", "=", "None", ")", ":", "self", ".", "processing", "[", "\"nextOrder\"", "]", "=", "plugin", ".", "order", "try", ":", "result", "=", "pyblish", ".", "plugin", ".", "process", "(", "plugin"...	33.517241	24.37931
def save(self, filename=None, v2_version=4, v23_sep='/'): """Save ID3v2 data to the AIFF file""" framedata = self._prepare_framedata(v2_version, v23_sep) framesize = len(framedata) if filename is None: filename = self.filename # Unlike the parent ID3.save method, w...	[ "def", "save", "(", "self", ",", "filename", "=", "None", ",", "v2_version", "=", "4", ",", "v23_sep", "=", "'/'", ")", ":", "framedata", "=", "self", ".", "_prepare_framedata", "(", "v2_version", ",", "v23_sep", ")", "framesize", "=", "len", "(", "fra...	34.097561	19.804878
def update_os_type(self): """Update os_type attribute.""" self.chain.connection.log("Detecting os type") os_type = self.driver.get_os_type(self.version_text) if os_type: self.chain.connection.log("SW Type: {}".format(os_type)) self.os_type = os_type	[ "def", "update_os_type", "(", "self", ")", ":", "self", ".", "chain", ".", "connection", ".", "log", "(", "\"Detecting os type\"", ")", "os_type", "=", "self", ".", "driver", ".", "get_os_type", "(", "self", ".", "version_text", ")", "if", "os_type", ":", ...	42.714286	14.857143
def _set_translated_fields(self, language_code=None, fields): """ Assign fields to the translated models. """ objects = [] # no generator, make sure objects are all filled first for parler_meta, model_fields in self._parler_meta._split_fields(fields): translation...	[ "def", "_set_translated_fields", "(", "self", ",", "language_code", "=", "None", ",", "", "", "fields", ")", ":", "objects", "=", "[", "]", "# no generator, make sure objects are all filled first", "for", "parler_meta", ",", "model_fields", "in", "self", ".", "_...	48.25	22.916667
def write_alignment(self, filename, file_format, interleaved=None): """ Write the alignment to file using Bio.AlignIO """ if file_format == 'phylip': file_format = 'phylip-relaxed' AlignIO.write(self._msa, filename, file_format)	[ "def", "write_alignment", "(", "self", ",", "filename", ",", "file_format", ",", "interleaved", "=", "None", ")", ":", "if", "file_format", "==", "'phylip'", ":", "file_format", "=", "'phylip-relaxed'", "AlignIO", ".", "write", "(", "self", ".", "_msa", ",",...	39.142857	8.857143
def delete_processing_block(processing_block_id): """Delete Processing Block with the specified ID""" scheduling_block_id = processing_block_id.split(':')[0] config = get_scheduling_block(scheduling_block_id) processing_blocks = config.get('processing_blocks') processing_block = list(filter( ...	[ "def", "delete_processing_block", "(", "processing_block_id", ")", ":", "scheduling_block_id", "=", "processing_block_id", ".", "split", "(", "':'", ")", "[", "0", "]", "config", "=", "get_scheduling_block", "(", "scheduling_block_id", ")", "processing_blocks", "=", ...	52.714286	18.214286
def _negotiateHandler(self, request): """ Negotiate a handler based on the content types acceptable to the client. :rtype: 2-`tuple` of `twisted.web.iweb.IResource` and `bytes` :return: Pair of a resource and the content type. """ accept = _parseAccept(request.re...	[ "def", "_negotiateHandler", "(", "self", ",", "request", ")", ":", "accept", "=", "_parseAccept", "(", "request", ".", "requestHeaders", ".", "getRawHeaders", "(", "'Accept'", ")", ")", "for", "contentType", "in", "accept", ".", "keys", "(", ")", ":", "han...	38.388889	16.277778

def get_first_part_id_for_assessment(assessment_id, runtime=None, proxy=None, create=False, bank_id=None): """Gets the first part id, which represents the first section, of assessment""" if create and bank_id is None: raise NullArgument('Bank Id must be provided for create option') try: retu...

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49.909091

28.909091

def make_logger(name, stream_type, jobs): """Create a logger component. :param name: name of logger child, i.e. logger will be named `noodles.<name>`. :type name: str :param stream_type: type of the stream that this logger will be inserted into, should be |pull_map| or |push_map|. :...

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34.346939

19.489796

def _tile(self, n): """Get the update tile surrounding particle `n` """ pos = self._trans(self.pos[n]) return Tile(pos, pos).pad(self.support_pad)

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41.75

8.5

def _map_purchase_request_to_func(self, purchase_request_type): """Provides appropriate parameters to the on_purchase functions.""" if purchase_request_type in self._intent_view_funcs: view_func = self._intent_view_funcs[purchase_request_type] else: raise NotImpl...

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52.214286

30.714286

def start(self): """ Start a producer/consumer service """ component = Component(self.config, self.handlers) component.run()

[ "def", "start", "(", "self", ")", ":", "component", "=", "Component", "(", "self", ".", "config", ",", "self", ".", "handlers", ")", "component", ".", "run", "(", ")" ]

26.5

9.833333

def replace_header(self, _name, _value): """Replace a header. Replace the first matching header found in the message, retaining header order and case. If no matching header was found, a KeyError is raised. """ _name = _name.lower() for i, (k, v) in zip(range(len...

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37.285714

19.5

def zs_to_ws(zs, MWs): r'''Converts a list of mole fractions to mass fractions. Requires molecular weights for all species. .. math:: w_i = \frac{z_i MW_i}{MW_{avg}} MW_{avg} = \sum_i z_i MW_i Parameters ---------- zs : iterable Mole fractions [-] MWs : iterable ...

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21.882353

24.058824

def get_allow_repeat_items_metadata(self): """get the metadata for allow repeat items""" metadata = dict(self._allow_repeat_items_metadata) metadata.update({'existing_id_values': self.my_osid_object_form._my_map['allowRepeatItems']}) return Metadata(**metadata)

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57.8

17.2

def _processEscapeSequences(replaceText): """Replace symbols like \n \\, etc """ def _replaceFunc(escapeMatchObject): char = escapeMatchObject.group(0)[1] if char in _escapeSequences: return _escapeSequences[char] return escapeMatchObject.group(0) # no any replacements,...

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35.272727

13.727273

def _get_retention_policy_value(self): """ Sets the deletion policy on this resource. The default is 'Retain'. :return: value for the DeletionPolicy attribute. """ if self.RetentionPolicy is None or self.RetentionPolicy.lower() == self.RETAIN.lower(): return self.RE...

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49.2

26.666667

def render_category_averages(obj, normalize_to=100): """Renders all the sub-averages for each category.""" context = {'reviewed_item': obj} ctype = ContentType.objects.get_for_model(obj) reviews = models.Review.objects.filter( content_type=ctype, object_id=obj.id) category_averages = {} ...

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47.225806

15.387097

def run_in_order(l, show_output=True, show_err=True, ignore_err=False, args=(), **kwargs): ''' Processes each element of l in order: if it is a string: execute it as a shell command elif it is a callable, call it with *args, **kwargs l-->list: Each elem is either a string (...

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39.782609

19.086957

def path(self, which=None): """Extend ``nailgun.entity_mixins.Entity.path``. The format of the returned path depends on the value of ``which``: smart_class_parameters /api/puppetclasses/:puppetclass_id/smart_class_parameters Otherwise, call ``super``. """ i...

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34.25

19.9375

def process_mavlink_packet(self, m): '''handle an incoming mavlink packet''' mtype = m.get_type() # if you add processing for an mtype here, remember to add it # to mavlink_packet, above if mtype in ['WAYPOINT_COUNT','MISSION_COUNT']: if (self.num_wps_expected == 0):...

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51.15

21.05

def describe_identity_pools(IdentityPoolName, IdentityPoolId=None, region=None, key=None, keyid=None, profile=None): ''' Given an identity pool name, (optionally if an identity pool id is given, the given name will be ignored) Returns a list of matched identity pool name's pool properti...

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34.242424

27.69697

def recursive_symlink_dirs(source_d, destination_d): ''' Create dirs and symlink all files recursively from source_d, ignoring errors (e.g. existing files) ''' func = os.symlink if os.name == 'nt': # NOTE: need to verify that default perms only allow admins to create # symlinks o...

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36.846154

19.461538

def intuition(args): ''' Main simulation wrapper Load the configuration, run the engine and return the analyze. ''' # Use the provided context builder to fill: # - config: General behavior # - strategy: Modules properties # - market: The universe we will trade on with setup.Co...

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35.977273

16.613636

def instance_norm(attrs, inputs, proto_obj): """Instance Normalization.""" new_attrs = translation_utils._fix_attribute_names(attrs, {'epsilon' : 'eps'}) new_attrs['eps'] = attrs.get('epsilon', 1e-5) return 'InstanceNorm', new_attrs, inputs

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50.4

11.8

def callAfter(func, *args, **kwargs): """call a function on the main thread (async)""" pool = NSAutoreleasePool.alloc().init() obj = PyObjCAppHelperCaller_wrap.alloc().initWithArgs_((func, args, kwargs)) obj.callAfter_(None) del obj del pool

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37

17

def touch_log(log, cwd='.'): """ Touches the log file. Creates if not exists OR updates the modification date if exists. :param log: :return: nothing """ logfile = '%s/%s' % (cwd, log) with open(logfile, 'a'): os.utime(logfile, None)

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27

16.111111

def _cache_metrics_metadata(self, instance): """ Get all the performance counters metadata meaning name/group/description... from the server instance, attached with the corresponding ID """ # ## <TEST-INSTRUMENTATION> t = Timer() # ## </TEST-INSTRUMENTATION> ...

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52.690476

28.833333

def mutual_info_score(self, reference_clusters): """ Calculates the MI (mutual information) w.r.t. the reference clusters (explicit evaluation) :param reference_clusters: Clusters that are to be used as reference :return: The resulting MI score. """ return mutual_info_sc...

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47

24.25

def get_doc(self, objtxt): """Get object documentation dictionary""" obj, valid = self._eval(objtxt) if valid: return getdoc(obj)

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33

9

def idxmax(self,skipna=True, axis=0): """ Get the index of the max value in a column or row :param bool skipna: If True (default), then NAs are ignored during the search. Otherwise presence of NAs renders the entire result NA. :param int axis: Direction of finding the max in...

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67.923077

39

def bind_top_down(lower, upper, __fval=None, **fval): """Bind 2 layers for building. When the upper layer is added as a payload of the lower layer, all the arguments # noqa: E501 will be applied to them. ex: >>> bind_top_down(Ether, SNAP, type=0x1234) >>> Ether()/SNAP() <Ether ...

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35.285714

16.214286

def build_filter(self, filter): """ Tries to build a :class:`filter.Filter` instance from the given filter. Raises ValueError if the :class:`filter.Filter` object can't be build from the given filter. """ try: self.filter = Filter.from_string(filter, self.lim...

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29

21.923077

def notification_message(self, title, content, icon=""): """This function sends "javascript" message to the client, that executes its content. In this particular code, a notification message is shown """ code = """ var options = { body: "%(content)s", ...

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45

15.181818

def files(self): """Return list of files in root directory""" self._printer('\tFiles Walk') for directory in self.directory: for path in os.listdir(directory): full_path = os.path.join(directory, path) if os.path.isfile(full_path): ...

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43.3

8.3

def go_to_line(self): """ Moves current **Script_Editor_tabWidget** Widget tab Model editor cursor to user defined line. :return: Method success. :rtype: bool :note: May require user interaction. """ editor = self.get_current_editor() if not editor: ...

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28.35

23.05

def _begin_write(session: UpdateSession, loop: asyncio.AbstractEventLoop, rootfs_file_path: str): """ Start the write process. """ session.set_progress(0) session.set_stage(Stages.WRITING) write_future = asyncio.ensure_future(loop.run_in_executor( None, file_act...

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34.473684

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def pictures(self): """list[Picture]: List of embedded pictures""" return [b for b in self.metadata_blocks if b.code == Picture.code]

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def snooze(self, requester, duration): """Snooze incident. :param requester: The email address of the individual requesting snooze. """ path = '{0}/{1}/{2}'.format(self.collection.name, self.id, 'snooze') data = {"duration": duration} extra_headers = {"From": requester} ...

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def lines_from_file(path, as_interned=False, encoding=None): """ Create a list of file lines from a given filepath. Args: path (str): File path as_interned (bool): List of "interned" strings (default False) Returns: strings (list): File line list """ lines = None wi...

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def normalized_mutation_entropy(counts, total_cts=None): """Calculate the normalized mutation entropy based on a list/array of mutation counts. Note: Any grouping of mutation counts together should be done before hand Parameters ---------- counts : np.array_like array/list of mutation ...

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def getName(self): r""" Returns the results name for this token expression. Useful when several different expressions might match at a particular location. Example:: integer = Word(nums) ssn_expr = Regex(r"\d\d\d-\d\d-\d\d\d\d") house_number_expr = S...

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def getWifiInfo(self, wifiInterfaceId=1, timeout=1): """Execute GetInfo action to get Wifi basic information's. :param int wifiInterfaceId: the id of the Wifi interface :param float timeout: the timeout to wait for the action to be executed :return: the basic informations :rtype...

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def _compute_log_acceptance_correction(current_state_parts, proposed_state_parts, current_volatility_parts, proposed_volatility_parts, current_drift_parts, ...

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def namedb_get_names_owned_by_address( cur, address, current_block ): """ Get the list of non-expired, non-revoked names owned by an address. Only works if there is a *singular* address for the name. """ unexpired_fragment, unexpired_args = namedb_select_where_unexpired_names( current_block ) ...

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def get_by_code(self, code): """ Retrieve a language by a code. :param code: iso code (any of the three) or its culture code :return: a Language object """ if any(x in code for x in ('_', '-')): cc = CultureCode.objects.get(code=code.replace('_', '-')) ...

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def build(self, text): """ :param text: Content of the paragraph """ super(Paragraph, self).build() self.content = text

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def loop_check(self): """Check if we have a loop in the graph :return: Nodes in loop :rtype: list """ in_loop = [] # Add the tag for dfs check for node in list(self.nodes.values()): node['dfs_loop_status'] = 'DFS_UNCHECKED' # Now do the job ...

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def get_all_memberships( self, limit_to=100, max_calls=None, parameters=None, since_when=None, start_record=0, verbose=False): """ Retrieve all memberships updated since "since_when" Loop over queries of size limit_to until either a non-full queryset is returned,...

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def accel_toggle_transparency(self, *args): """Callback to toggle transparency. """ self.transparency_toggled = not self.transparency_toggled self.settings.styleBackground.triggerOnChangedValue( self.settings.styleBackground, 'transparency' ) return True

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def explore_server(server_url, username, password): """ Demo of exploring a cim server for characteristics defined by the server class """ print("WBEM server URL:\n %s" % server_url) conn = WBEMConnection(server_url, (username, password), no_verification=True) se...

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def replace_bytes(self, m): """Replace escapes.""" esc = m.group(0) value = esc if m.group('special'): value = BACK_SLASH_TRANSLATION[esc] elif m.group('char'): try: value = chr(int(esc[2:], 16)) except Exception: ...

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def get_sshconfig(): r''' Read user's SSH configuration file ''' with open(os.path.expanduser('~/.ssh/config')) as f: cfg = paramiko.SSHConfig() cfg.parse(f) ret_dict = {} for d in cfg._config: _copy = dict(d) # Avoid buggy behavior with strange h...

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def circuit_to_pdf_using_qcircuit_via_tex(circuit: circuits.Circuit, filepath: str, pdf_kwargs=None, qcircuit_kwargs=None, clean_ext=('dvi', 'ps'), ...

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def read_contents(self, name, conn): '''Read schema tables''' sql = '''select c.relname, d.description, case c.relkind when 'r' then 'table' when 'v' then 'view' when 'm' then 'm...

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def is_API_online(self): """ Returns True if the OWM Weather API is currently online. A short timeout is used to determine API service availability. :returns: bool """ params = {'q': 'London,GB'} uri = http_client.HttpClient.to_url(OBSERVATION_URL, ...

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def shutdown(self): """ Signals worker to shutdown (via sentinel) then cleanly joins the thread """ self.shutdownLocal() newJobsQueue = self.newJobsQueue self.newJobsQueue = None newJobsQueue.put(None) self.worker.join()

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def artifact_cache_dir(self): """Note that this is unrelated to the general pants artifact cache.""" return (self.get_options().artifact_cache_dir or os.path.join(self.scratch_dir, 'artifacts'))

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def long_click(self): ''' Perform a long click action on the object. Usage: d(text="Image").long_click() # long click on the center of the ui object d(text="Image").long_click.topleft() # long click on the topleft of the ui object d(text="Image").long_click.bottomright(...

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def submit_file_content(self, method, url, data, headers, params, halt_on_error=True): """Submit File Content for Documents and Reports to ThreatConnect API. Args: method (str): The HTTP method for the request (POST, PUT). url (str): The URL for the request. data (st...

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def item(self): """ ToDo >>> from hydpy.core.examples import prepare_full_example_1 >>> prepare_full_example_1() >>> from hydpy import HydPy, TestIO, XMLInterface, pub >>> hp = HydPy('LahnH') >>> pub.timegrids = '1996-01-01', '1996-01-06', '1d' >>> with TestIO()...

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def can_add_lv_load_area(self, node): # TODO: check docstring """Sums up peak load of LV stations That is, total peak load for satellite string Args ---- node: GridDing0 Descr Returns ------- bool ...

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def _dump_query_timestamps(self, current_time: float): """Output the number of GraphQL queries grouped by their query_hash within the last time.""" windows = [10, 11, 15, 20, 30, 60] print("GraphQL requests:", file=sys.stderr) for query_hash, times in self._graphql_query_timestamps.items...

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def get_scores(self, *args): ''' In this case, parameters a and b aren't used, since this information is taken directly from the corpus categories. Returns ------- ''' def jelinek_mercer_smoothing(cat): p_hat_w = self.tdf_[cat] * 1. / self.tdf_[cat].sum() c_hat_w = (self.smoothing_lambda_) * self...

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def set_secondary_vehicle_position(self, m): '''store second vehicle position for filtering purposes''' if m.get_type() != 'GLOBAL_POSITION_INT': return (lat, lon, heading) = (m.lat*1.0e-7, m.lon*1.0e-7, m.hdg*0.01) if abs(lat) < 1.0e-3 and abs(lon) < 1.0e-3: retu...

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def get_ips(self, instance_id): """Retrieves all IP addresses associated to a given instance. :return: tuple (IPs) """ self._init_os_api() instance = self._load_instance(instance_id) try: ip_addrs = set([self.floating_ip]) except AttributeError: ...

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35.133333

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def get_chebi_name_from_id(chebi_id, offline=False): """Return a ChEBI name corresponding to the given ChEBI ID. Parameters ---------- chebi_id : str The ChEBI ID whose name is to be returned. offline : Optional[bool] Choose whether to allow an online lookup if the local lookup fail...

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def _convert(x, factor1, factor2): """ Converts mixing ratio x in comp1 - comp2 tie line to that in c1 - c2 tie line. Args: x (float): Mixing ratio x in comp1 - comp2 tie line, a float between 0 and 1. factor1 (float): Compositional ratio between ...

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def sigmasq(htilde, psd = None, low_frequency_cutoff=None, high_frequency_cutoff=None): """Return the loudness of the waveform. This is defined (see Duncan Brown's thesis) as the unnormalized matched-filter of the input waveform, htilde, with itself. This quantity is usually referred to as (sigm...

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def get_tx_out(self, tx_hash, vout_id, id=None, endpoint=None): """ Gets a transaction output by specified transaction hash and output index Args: tx_hash: (str) hash in the form '58c634f81fbd4ae2733d7e3930a9849021840fc19dc6af064d6f2812a333f91d' vout_id: (int) index of th...

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def _to_dict(self): """Return a json dictionary representing this model.""" _dict = {} if hasattr(self, 'name') and self.name is not None: _dict['name'] = self.name if hasattr(self, 'description') and self.description is not None: _dict['description'] = self.descr...

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def _normalize_options(self, options): """ Generator of 2-tuples (option-key, option-value). When options spec is a list, generate a 2-tuples per list item. :param options: dict {option: value} returns: iterator (option-key, option-value) - option names lowe...

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def prepare_to_generate(self, data_dir, tmp_dir): """Make sure that the data is prepared and the vocab is generated.""" self.get_or_create_vocab(data_dir, tmp_dir) self.train_text_filepaths(tmp_dir) self.dev_text_filepaths(tmp_dir)

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def smart_search(cls, query_string, search_options=None, extra_query = None): """ Perform a smart VRF search. Maps to the function :py:func:`nipap.backend.Nipap.smart_search_vrf` in the backend. Please see the documentation for the backend function for informatio...

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def downside_risk(returns, required_return=0, period=DAILY): """ Determines the downside deviation below a threshold Parameters ---------- returns : pd.Series or pd.DataFrame Daily returns of the strategy, noncumulative. - See full explanation in :func:`~pyfolio.timeseries.cum_retur...

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def parse(self, url): """ Return a configuration dict from a URL """ parsed_url = urlparse.urlparse(url) try: default_config = self.CONFIG[parsed_url.scheme] except KeyError: raise ValueError( 'unrecognised URL scheme for {}: {}'.fo...

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def get_opcodes_from_bp_table(bp): """Given a 2d list structure, collect the opcodes from the best path.""" x = len(bp) - 1 y = len(bp[0]) - 1 opcodes = [] while x != 0 or y != 0: this_bp = bp[x][y] opcodes.append(this_bp) if this_bp[0] == EQUAL or this_bp[0] == REPLACE: ...

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def is_allowed(self, request: AxesHttpRequest, credentials: dict = None) -> bool: """ Checks if the user is allowed to access or use given functionality such as a login view or authentication. This method is abstract and other backends can specialize it as needed, but the default implementation...

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def a_list(label=None, kwargs=None, attributes=None): """Return assembled DOT a_list string. >>> a_list('spam', {'spam': None, 'ham': 'ham ham', 'eggs': ''}) 'label=spam eggs="" ham="ham ham"' """ result = ['label=%s' % quote(label)] if label is not None else [] if kwargs: items = ['%s=...

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def save(nifti_filename, numpy_data): """ Export a numpy array to a nifti file. TODO: currently using dummy headers and identity matrix affine transform. This can be expanded. Arguments: nifti_filename (str): A filename to which to save the nifti data numpy_data (numpy.ndarray): The nu...

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def count(keys, axis=semantics.axis_default): """count the number of times each key occurs in the input set Arguments --------- keys : indexable object Returns ------- unique : ndarray, [groups, ...] unique keys count : ndarray, [groups], int the number of times each ke...

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def write_touchstone(fname, options, data, noise=None, frac_length=10, exp_length=2): r""" Write a `Touchstone`_ file. Parameter data is first resized to an :code:`points` x :code:`nports` x :code:`nports` where :code:`points` represents the number of frequency points and :code:`nports` represents ...

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def get_interpolation_function(self, times, series): """ Initializes interpolation model :param times: Array of reference times in second relative to the first timestamp :type times: numpy.array :param series: One dimensional array of time series :type series: numpy.array ...

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def update(self, options=None, attribute_options=None): """ Updates this mapping with the given option and attribute option maps. :param dict options: Maps representer options to their values. :param dict attribute_options: Maps attribute names to dictionaries mapping attribut...

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def update_configuration(app): """Update parameters which are dependent on information from the project-specific conf.py (including its location on the filesystem)""" config = app.config project = config.project config_dir = app.env.srcdir sys.path.insert(0, os.path.join(config_dir, '..')) ...

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def morelikethis(self, index, doc_type, id, fields, **query_params): """ Execute a "more like this" search query against one or more fields and get back search hits. """ path = make_path(index, doc_type, id, '_mlt') query_params['mlt_fields'] = ','.join(fields) body = que...

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def __checkSPKTimestamp(self): """ Check whether the SPK is too old and generate a new one in that case. """ if time.time() - self.__spk["timestamp"] > self.__spk_timeout: self.__generateSPK()

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def process(self): """ Loops over the underlying queue of events and processes them in order. """ assert self.queue is not None while True: event = self.queue.get() if self.pre_process_event(event): self.invoke_handlers(event) s...

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def purge_dict(idict): """Remove null items from a dictionary """ odict = {} for key, val in idict.items(): if is_null(val): continue odict[key] = val return odict

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def _generate_download_google_link(link): """ ----- Brief ----- Function that returns a direct download link of a file stored inside a Google Drive Repository. ----------- Description ----------- Generally a link from a Google Drive file is only for viewing purposes. If the...

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def _open_fits_files(filenames): """ Given a {correlation: filename} mapping for filenames returns a {correlation: file handle} mapping """ kw = { 'mode' : 'update', 'memmap' : False } def _fh(fn): """ Returns a filehandle or None if file does not exist """ return fits.open(fn, ...

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34.5

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def class_declaration(self, type_): """ Returns reference to the class declaration. """ utils.loggers.queries_engine.debug( "Container traits: searching class declaration for %s", type_) cls_declaration = self.get_container_or_none(type_) if not cls_declara...

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def filter_objects(self, objects, perm=None): """ Return only objects with specified permission in objects list. If perm not specified, 'view' perm will be used. """ if perm is None: perm = build_permission_name(self.model_class, 'view') return filter(lambda o: self.user.has_perm(per...

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def report(self): """Return a report about the pool state and configuration. :rtype: dict """ return { 'connections': { 'busy': len(self.busy_connections), 'closed': len(self.closed_connections), 'executing': len(self.executin...

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def to_python(self, data): """ Convert a data to python format. """ if data is None: return '' if isinstance(data, unicode): data = data.encode(DEFAULT_ENCODING) else: data = str(data) return data

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def open_data(self, text, colsep=u"\t", rowsep=u"\n", transpose=False, skiprows=0, comments='#'): """Open clipboard text as table""" if pd: self.pd_text = text self.pd_info = dict(sep=colsep, lineterminator=rowsep, skiprows=skiprows, commen...

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def get_neighbor_sentence_ngrams( mention, d=1, attrib="words", n_min=1, n_max=1, lower=True ): """Get the ngrams that are in the neighoring Sentences of the given Mention. Note that if a candidate is passed in, all of its Mentions will be searched. :param mention: The Mention whose neighbor Sentences...

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def extend(*args): """shallow dictionary merge Args: a: dict to extend b: dict to apply to a Returns: new instance of the same type as _a_, with _a_ and _b_ merged. """ if not args: return {} first = args[0] rest = args[1:] out = type(first)(first) ...

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18.894737

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def _get_access_token(self): """Get access token using app_id, login and password OR service token (service token docs: https://vk.com/dev/service_token """ if self._service_token: logger.info('Use service token: %s', 5 * '*' + self._service_token[50:]...

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45

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def addTransitions(self, state, transitions): """ Create a new L{TransitionTable} with all the same transitions as this L{TransitionTable} plus a number of new transitions. @param state: The state for which the new transitions are defined. @param transitions: A L{dict} mapping i...

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def _process(self, plugin, instance=None): """Produce `result` from `plugin` and `instance` :func:`process` shares state with :func:`_iterator` such that an instance/plugin pair can be fetched and processed in isolation. Arguments: plugin (pyblish.api.Plugin): Produce resul...

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def save(self, filename=None, v2_version=4, v23_sep='/'): """Save ID3v2 data to the AIFF file""" framedata = self._prepare_framedata(v2_version, v23_sep) framesize = len(framedata) if filename is None: filename = self.filename # Unlike the parent ID3.save method, w...

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34.097561

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def update_os_type(self): """Update os_type attribute.""" self.chain.connection.log("Detecting os type") os_type = self.driver.get_os_type(self.version_text) if os_type: self.chain.connection.log("SW Type: {}".format(os_type)) self.os_type = os_type

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def _set_translated_fields(self, language_code=None, **fields): """ Assign fields to the translated models. """ objects = [] # no generator, make sure objects are all filled first for parler_meta, model_fields in self._parler_meta._split_fields(**fields): translation...

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def write_alignment(self, filename, file_format, interleaved=None): """ Write the alignment to file using Bio.AlignIO """ if file_format == 'phylip': file_format = 'phylip-relaxed' AlignIO.write(self._msa, filename, file_format)

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def delete_processing_block(processing_block_id): """Delete Processing Block with the specified ID""" scheduling_block_id = processing_block_id.split(':')[0] config = get_scheduling_block(scheduling_block_id) processing_blocks = config.get('processing_blocks') processing_block = list(filter( ...

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def _negotiateHandler(self, request): """ Negotiate a handler based on the content types acceptable to the client. :rtype: 2-`tuple` of `twisted.web.iweb.IResource` and `bytes` :return: Pair of a resource and the content type. """ accept = _parseAccept(request.re...

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