kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def style_classpath(self, products, scheduler): """Returns classpath as paths for scalastyle.""" classpath_entries = self._tool_classpath('scalastyle', products, scheduler) return [classpath_entry.path for classpath_entry in classpath_entries]	[ "def", "style_classpath", "(", "self", ",", "products", ",", "scheduler", ")", ":", "classpath_entries", "=", "self", ".", "_tool_classpath", "(", "'scalastyle'", ",", "products", ",", "scheduler", ")", "return", "[", "classpath_entry", ".", "path", "for", "cl...	63	20
def is_canonical_address(address: Any) -> bool: """ Returns `True` if the `value` is an address in its canonical form. """ if not is_bytes(address) or len(address) != 20: return False return address == to_canonical_address(address)	[ "def", "is_canonical_address", "(", "address", ":", "Any", ")", "->", "bool", ":", "if", "not", "is_bytes", "(", "address", ")", "or", "len", "(", "address", ")", "!=", "20", ":", "return", "False", "return", "address", "==", "to_canonical_address", "(", ...	36.142857	11.285714
def build_columns(self, X, verbose=False): """construct the model matrix columns for the term Parameters ---------- X : array-like Input dataset with n rows verbose : bool whether to show warnings Returns ------- scipy sparse arr...	[ "def", "build_columns", "(", "self", ",", "X", ",", "verbose", "=", "False", ")", ":", "return", "sp", ".", "sparse", ".", "csc_matrix", "(", "X", "[", ":", ",", "self", ".", "feature", "]", "[", ":", ",", "np", ".", "newaxis", "]", ")" ]	25.125	18.1875
def cancel(self, job_ids): """Cancel the jobs specified by a list of job ids. Parameters ---------- job_ids : list of str List of of job identifiers Returns ------- list of bool Each entry in the list will contain False if the operation f...	[ "def", "cancel", "(", "self", ",", "job_ids", ")", ":", "if", "self", ".", "linger", "is", "True", ":", "logger", ".", "debug", "(", "\"Ignoring cancel requests due to linger mode\"", ")", "return", "[", "False", "for", "x", "in", "job_ids", "]", "try", ":...	30.727273	23.666667
def get_link_mappings(link_id, link_2_id=None, **kwargs): """ Get all the resource attribute mappings in a network. If another network is specified, only return the mappings between the two networks. """ qry = db.DBSession.query(ResourceAttrMap).filter( or_( and_( ...	[ "def", "get_link_mappings", "(", "link_id", ",", "link_2_id", "=", "None", ",", "", "", "kwargs", ")", ":", "qry", "=", "db", ".", "DBSession", ".", "query", "(", "ResourceAttrMap", ")", ".", "filter", "(", "or_", "(", "and_", "(", "ResourceAttrMap", ...	38.48	20.48
def strip_prompt(self, a_string): """Strip the trailing router prompt from the output.""" expect_string = r"^(OK\|ERROR\|Command not recognized\.)$" response_list = a_string.split(self.RESPONSE_RETURN) last_line = response_list[-1] if re.search(expect_string, last_line): ...	[ "def", "strip_prompt", "(", "self", ",", "a_string", ")", ":", "expect_string", "=", "r\"^(OK\|ERROR\|Command not recognized\\.)$\"", "response_list", "=", "a_string", ".", "split", "(", "self", ".", "RESPONSE_RETURN", ")", "last_line", "=", "response_list", "[", "-",...	45.333333	13.888889
def learn(self, args, kwargs): """[DEPRECATED] Use 'fit_predict'. """ warnings.warn("learn is deprecated, {}.fit_predict " "instead".format(self.__class__.__name__)) return self.fit_predict(args, **kwargs)	[ "def", "learn", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "warnings", ".", "warn", "(", "\"learn is deprecated, {}.fit_predict \"", "\"instead\"", ".", "format", "(", "self", ".", "__class__", ".", "__name__", ")", ")", "return", "s...	36.857143	14.142857
def optimal_t(self, seq_p, seq_ch, pattern_multiplicity=None, ignore_gaps=False): ''' Find the optimal distance between the two sequences Parameters ---------- seq_p : character array Parent sequence seq_c : character array Child sequence ...	[ "def", "optimal_t", "(", "self", ",", "seq_p", ",", "seq_ch", ",", "pattern_multiplicity", "=", "None", ",", "ignore_gaps", "=", "False", ")", ":", "seq_pair", ",", "multiplicity", "=", "self", ".", "compress_sequence_pair", "(", "seq_p", ",", "seq_ch", ",",...	38.407407	28.555556
def create_server_rackspace(connection, distribution, disk_name, disk_size, ami, region, key_pair, instance_type, ...	[ "def", "create_server_rackspace", "(", "connection", ",", "distribution", ",", "disk_name", ",", "disk_size", ",", "ami", ",", "region", ",", "key_pair", ",", "instance_type", ",", "instance_name", ",", "tags", "=", "{", "}", ",", "security_groups", "=", "None...	33.723404	16.574468
def set_property_filter(filter_proto, name, op, value): """Set property filter contraint in the given datastore.Filter proto message. Args: filter_proto: datastore.Filter proto message name: property name op: datastore.PropertyFilter.Operation value: property value Returns: the same datastor...	[ "def", "set_property_filter", "(", "filter_proto", ",", "name", ",", "op", ",", "value", ")", ":", "filter_proto", ".", "Clear", "(", ")", "pf", "=", "filter_proto", ".", "property_filter", "pf", ".", "property", ".", "name", "=", "name", "pf", ".", "op"...	26.818182	18.818182
def start(self, positionals=None): '''start the helper flow. We check helper system configurations to determine components that should be collected for the submission. This is where the client can also pass on any extra (positional) arguments in a list from the user. '''...	[ "def", "start", "(", "self", ",", "positionals", "=", "None", ")", ":", "bot", ".", "info", "(", "'[helpme\|%s]'", "%", "(", "self", ".", "name", ")", ")", "self", ".", "speak", "(", ")", "self", ".", "_start", "(", "positionals", ")" ]	45.666667	19.666667
def clear_scroll(self, scroll_id=None, body=None, **query_params): """ Clear the scroll request created by specifying the scroll parameter to search. `<http://www.elastic.co/guide/en/elasticsearch/reference/current/search-request-scroll.html>`_ :param scroll_id: A comma-separated...	[ "def", "clear_scroll", "(", "self", ",", "scroll_id", "=", "None", ",", "body", "=", "None", ",", "", "", "query_params", ")", ":", "if", "scroll_id", "in", "NULL_VALUES", "and", "body", "in", "NULL_VALUES", ":", "raise", "ValueError", "(", "\"You need t...	50.052632	24.789474
def unfollow(user, obj): """ Make a user unfollow an object """ try: follow = Follow.objects.get_follows(obj).get(user=user) follow.delete() return follow except Follow.DoesNotExist: pass	[ "def", "unfollow", "(", "user", ",", "obj", ")", ":", "try", ":", "follow", "=", "Follow", ".", "objects", ".", "get_follows", "(", "obj", ")", ".", "get", "(", "user", "=", "user", ")", "follow", ".", "delete", "(", ")", "return", "follow", "excep...	28.125	17.875
def cfgGetBool(theObj, name, dflt): """ Get a stringified val from a ConfigObj obj and return it as bool """ strval = theObj.get(name, None) if strval is None: return dflt return strval.lower().strip() == 'true'	[ "def", "cfgGetBool", "(", "theObj", ",", "name", ",", "dflt", ")", ":", "strval", "=", "theObj", ".", "get", "(", "name", ",", "None", ")", "if", "strval", "is", "None", ":", "return", "dflt", "return", "strval", ".", "lower", "(", ")", ".", "strip...	38.333333	8.666667
def strip_between(self, string, start, end): """Deletes everything between regexes start and end from string""" regex = start + r'.?' + end + r'\s' res = re.sub(regex, '', string, flags=re.DOTALL\|re.IGNORECASE\|re.MULTILINE) return res	[ "def", "strip_between", "(", "self", ",", "string", ",", "start", ",", "end", ")", ":", "regex", "=", "start", "+", "r'.?'", "+", "end", "+", "r'\\s'", "res", "=", "re", ".", "sub", "(", "regex", ",", "''", ",", "string", ",", "flags", "=", "re...	47.333333	9.333333
def get_template_folder(): """Get path to the folder where th HTML templates are.""" cfg = get_project_configuration() if 'templates' not in cfg: home = os.path.expanduser("~") rcfile = os.path.join(home, ".hwrtrc") cfg['templates'] = pkg_resources.resource_filename('hwrt', ...	[ "def", "get_template_folder", "(", ")", ":", "cfg", "=", "get_project_configuration", "(", ")", "if", "'templates'", "not", "in", "cfg", ":", "home", "=", "os", ".", "path", ".", "expanduser", "(", "\"~\"", ")", "rcfile", "=", "os", ".", "path", ".", "...	44.909091	11.363636
def source_expand(self, source): '''Expand the wildcards for an S3 path. This emulates the shall expansion for wildcards if the input is local path. ''' result = [] if not isinstance(source, list): source = [source] for src in source: # XXX Hacky: We need to disable recursive wh...	[ "def", "source_expand", "(", "self", ",", "source", ")", ":", "result", "=", "[", "]", "if", "not", "isinstance", "(", "source", ",", "list", ")", ":", "source", "=", "[", "source", "]", "for", "src", "in", "source", ":", "# XXX Hacky: We need to disable...	32.818182	22.636364
def tokenize(self, sentence, normalize=True, is_feature=False, is_surface=False, return_list=False, func_normalizer=text_preprocess.normalize_text): # type: (text_type, bool, bool, bool, bool, Callable[[str],str]) -> Union[List...	[ "def", "tokenize", "(", "self", ",", "sentence", ",", "normalize", "=", "True", ",", "is_feature", "=", "False", ",", "is_surface", "=", "False", ",", "return_list", "=", "False", ",", "func_normalizer", "=", "text_preprocess", ".", "normalize_text", ")", ":...	39.947368	19.078947
def validate(self, collection: BioCCollection): """Validate a single collection.""" for document in collection.documents: self.validate_doc(document)	[ "def", "validate", "(", "self", ",", "collection", ":", "BioCCollection", ")", ":", "for", "document", "in", "collection", ".", "documents", ":", "self", ".", "validate_doc", "(", "document", ")" ]	43.5	3.25
async def download_cot_artifacts(chain): """Call ``download_cot_artifact`` in parallel for each "upstreamArtifacts". Optional artifacts are allowed to not be downloaded. Args: chain (ChainOfTrust): the chain of trust object Returns: list: list of full paths to downloaded artifacts. Fa...	[ "async", "def", "download_cot_artifacts", "(", "chain", ")", ":", "upstream_artifacts", "=", "chain", ".", "task", "[", "'payload'", "]", ".", "get", "(", "'upstreamArtifacts'", ",", "[", "]", ")", "all_artifacts_per_task_id", "=", "get_all_artifacts_per_task_id", ...	40.410256	29.179487
def time_plots(df, path, title=None, color="#4CB391", figformat="png", log_length=False, plot_settings=None): """Making plots of time vs read length, time vs quality and cumulative yield.""" dfs = check_valid_time_and_sort(df, "start_time") logging.info("Nanoplotter: Creating timeplots using ...	[ "def", "time_plots", "(", "df", ",", "path", ",", "title", "=", "None", ",", "color", "=", "\"#4CB391\"", ",", "figformat", "=", "\"png\"", ",", "log_length", "=", "False", ",", "plot_settings", "=", "None", ")", ":", "dfs", "=", "check_valid_time_and_sort...	57.818182	15.818182
def stop_broadcast(self, broadcast_id): """ Use this method to stop a live broadcast of an OpenTok session :param String broadcast_id: The ID of the broadcast you want to stop :rtype A Broadcast object, which contains information of the broadcast: id, sessionId projectId, creat...	[ "def", "stop_broadcast", "(", "self", ",", "broadcast_id", ")", ":", "endpoint", "=", "self", ".", "endpoints", ".", "broadcast_url", "(", "broadcast_id", ",", "stop", "=", "True", ")", "response", "=", "requests", ".", "post", "(", "endpoint", ",", "heade...	40.387097	18.258065
def download_patric_genomes(self, ids, force_rerun=False): """Download genome files from PATRIC given a list of PATRIC genome IDs and load them as strains. Args: ids (str, list): PATRIC ID or list of PATRIC IDs force_rerun (bool): If genome files should be downloaded again even ...	[ "def", "download_patric_genomes", "(", "self", ",", "ids", ",", "force_rerun", "=", "False", ")", ":", "ids", "=", "ssbio", ".", "utils", ".", "force_list", "(", "ids", ")", "counter", "=", "0", "log", ".", "info", "(", "'Downloading sequences from PATRIC......	47.708333	28.833333
def check_access_token(self, request_token): """Checks that the token contains only safe characters and is no shorter than lower and no longer than upper. """ lower, upper = self.access_token_length return (set(request_token) <= self.safe_characters and lower <= l...	[ "def", "check_access_token", "(", "self", ",", "request_token", ")", ":", "lower", ",", "upper", "=", "self", ".", "access_token_length", "return", "(", "set", "(", "request_token", ")", "<=", "self", ".", "safe_characters", "and", "lower", "<=", "len", "(",...	48.714286	9.714286
def demo(nums=[]): "Print a few usage examples on stdout." nums = nums or [3, 1, 4, 1, 5, 9, 2, 6] fmt = lambda num: '{0:g}'.format(num) if isinstance(num, (float, int)) else 'None' nums1 = list(map(fmt, nums)) if __name__ == '__main__': prog = sys.argv[0] else: prog = 'sparkli...	[ "def", "demo", "(", "nums", "=", "[", "]", ")", ":", "nums", "=", "nums", "or", "[", "3", ",", "1", ",", "4", ",", "1", ",", "5", ",", "9", ",", "2", ",", "6", "]", "fmt", "=", "lambda", "num", ":", "'{0:g}'", ".", "format", "(", "num", ...	37.431818	24.431818
def retry(self, f, args, kwargs): """ Retries the given function self.tries times on NetworkErros """ backoff = random.random() / 100 # 5ms on average for _ in range(self.tries - 1): try: return f(args, **kwargs) except NetworkError: ...	[ "def", "retry", "(", "self", ",", "f", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "backoff", "=", "random", ".", "random", "(", ")", "/", "100", "# 5ms on average", "for", "_", "in", "range", "(", "self", ".", "tries", "-", "1", ")", ...	33.833333	8.833333
def get_coinc_def_id(self, search, search_coinc_type, create_new = True, description = None): """ Return the coinc_def_id for the row in the table whose search string and search_coinc_type integer have the values given. If a matching row is not found, the default behaviour is to create a new row and return t...	[ "def", "get_coinc_def_id", "(", "self", ",", "search", ",", "search_coinc_type", ",", "create_new", "=", "True", ",", "description", "=", "None", ")", ":", "# look for the ID", "rows", "=", "[", "row", "for", "row", "in", "self", "if", "(", "row", ".", "...	39.806452	20.580645
def doDirectPayment(self, params): """Call PayPal DoDirectPayment method.""" defaults = {"method": "DoDirectPayment", "paymentaction": "Sale"} required = ["creditcardtype", "acct", "expdate", "cvv2", "ipaddress", ...	[ "def", "doDirectPayment", "(", "self", ",", "params", ")", ":", "defaults", "=", "{", "\"method\"", ":", "\"DoDirectPayment\"", ",", "\"paymentaction\"", ":", "\"Sale\"", "}", "required", "=", "[", "\"creditcardtype\"", ",", "\"acct\"", ",", "\"expdate\"", ",", ...	40.444444	14.407407
def doc_dir(self): """The absolute directory of the document""" from os.path import abspath if not self.ref: return None u = parse_app_url(self.ref) return abspath(dirname(u.path))	[ "def", "doc_dir", "(", "self", ")", ":", "from", "os", ".", "path", "import", "abspath", "if", "not", "self", ".", "ref", ":", "return", "None", "u", "=", "parse_app_url", "(", "self", ".", "ref", ")", "return", "abspath", "(", "dirname", "(", "u", ...	25.111111	16.222222
def delete_as(access_token, subscription_id, resource_group, as_name): '''Delete availability set. Args: access_token (str): A valid Azure authentication token. subscription_id (str): Azure subscription id. resource_group (str): Azure resource group name. as_name (str): Name of ...	[ "def", "delete_as", "(", "access_token", ",", "subscription_id", ",", "resource_group", ",", "as_name", ")", ":", "endpoint", "=", "''", ".", "join", "(", "[", "get_rm_endpoint", "(", ")", ",", "'/subscriptions/'", ",", "subscription_id", ",", "'/resourceGroups/...	39.555556	21.666667
def retrofitted(self): """ :returns: the asset retrofitted value """ return self.calc('structural', {'structural': self._retrofitted}, self.area, self.number)	[ "def", "retrofitted", "(", "self", ")", ":", "return", "self", ".", "calc", "(", "'structural'", ",", "{", "'structural'", ":", "self", ".", "_retrofitted", "}", ",", "self", ".", "area", ",", "self", ".", "number", ")" ]	35	10.666667
def horizontal(y, xmin=0, xmax=1, color=None, width=None, dash=None, opacity=None): """Draws a horizontal line from `xmin` to `xmax`. Parameters ---------- xmin : int, optional xmax : int, optional color : str, optional width : number, optional Returns ------- Chart """ ...	[ "def", "horizontal", "(", "y", ",", "xmin", "=", "0", ",", "xmax", "=", "1", ",", "color", "=", "None", ",", "width", "=", "None", ",", "dash", "=", "None", ",", "opacity", "=", "None", ")", ":", "lineattr", "=", "{", "}", "if", "color", ":", ...	22.407407	24.185185
def calc_ethsw_port(self, port_num, port_def): """ Split and create the port entry for an Ethernet Switch :param port_num: port number :type port_num: str or int :param str port_def: port definition """ # Port String - access 1 SW2 1 # 0: type 1: vlan 2: ...	[ "def", "calc_ethsw_port", "(", "self", ",", "port_num", ",", "port_def", ")", ":", "# Port String - access 1 SW2 1", "# 0: type 1: vlan 2: destination device 3: destination port", "port_def", "=", "port_def", ".", "split", "(", "' '", ")", "if", "len", "(", "port_def", ...	36.925926	9.666667
def get_one(cls, execution_date, key=None, task_id=None, dag_id=None, include_prior_dates=False, session=None): """ Retrieve an XCom value, optionally meeting certain criteria. TODO: "pickling" has be...	[ "def", "get_one", "(", "cls", ",", "execution_date", ",", "key", "=", "None", ",", "task_id", "=", "None", ",", "dag_id", "=", "None", ",", "include_prior_dates", "=", "False", ",", "session", "=", "None", ")", ":", "filters", "=", "[", "]", "if", "k...	37.622222	19.622222
def dictfetchall(cursor): """Returns all rows from a cursor as a dict (rather than a headerless table) From Django Documentation: https://docs.djangoproject.com/en/dev/topics/db/sql/ """ desc = cursor.description return [dict(zip([col[0] for col in desc], row)) for row in cursor.fetchall()]	[ "def", "dictfetchall", "(", "cursor", ")", ":", "desc", "=", "cursor", ".", "description", "return", "[", "dict", "(", "zip", "(", "[", "col", "[", "0", "]", "for", "col", "in", "desc", "]", ",", "row", ")", ")", "for", "row", "in", "cursor", "."...	43.714286	21.571429
def GetFileSystemTypeIndicators(cls, path_spec, resolver_context=None): """Determines if a file contains a supported file system types. Args: path_spec (PathSpec): path specification. resolver_context (Optional[Context]): resolver context, where None represents the built-in context which ...	[ "def", "GetFileSystemTypeIndicators", "(", "cls", ",", "path_spec", ",", "resolver_context", "=", "None", ")", ":", "if", "(", "cls", ".", "_file_system_remainder_list", "is", "None", "or", "cls", ".", "_file_system_store", "is", "None", ")", ":", "specification...	39.961538	18.038462
def flag_forgotten_entries(session, today=None): """Flag any entries from previous days where users forgot to sign out. :param session: SQLAlchemy session through which to access the database. :param today: (optional) The current date as a `datetime.date` object. Used for testing. """ # noqa to...	[ "def", "flag_forgotten_entries", "(", "session", ",", "today", "=", "None", ")", ":", "# noqa", "today", "=", "date", ".", "today", "(", ")", "if", "today", "is", "None", "else", "today", "forgotten", "=", "(", "session", ".", "query", "(", "Entry", ")...	31.130435	21.434783
def generate_action(args): """Generate action.""" controller = args.get('<controller>') action = args.get('<action>') with_template = args.get('-t') current_path = os.getcwd() logger.info('Start generating action.') controller_file_path = os.path.join(current_path, 'application/controllers...	[ "def", "generate_action", "(", "args", ")", ":", "controller", "=", "args", ".", "get", "(", "'<controller>'", ")", "action", "=", "args", ".", "get", "(", "'<action>'", ")", "with_template", "=", "args", ".", "get", "(", "'-t'", ")", "current_path", "="...	46.344828	27.62069
def texture_from_image(renderer, image_name): """Create an SDL2 Texture from an image file""" soft_surface = ext.load_image(image_name) texture = SDL_CreateTextureFromSurface(renderer.renderer, soft_surface) SDL_FreeSurface(soft_surface) return texture	[ "def", "texture_from_image", "(", "renderer", ",", "image_name", ")", ":", "soft_surface", "=", "ext", ".", "load_image", "(", "image_name", ")", "texture", "=", "SDL_CreateTextureFromSurface", "(", "renderer", ".", "renderer", ",", "soft_surface", ")", "SDL_FreeS...	44.5	12.333333
def add_virtual_columns_proper_motion_gal2eq(self, long_in="ra", lat_in="dec", pm_long="pm_l", pm_lat="pm_b", pm_long_out="pm_ra", pm_lat_out="pm_dec", name_prefix="__proper_motion_gal2eq", right_ascension_galactic_pole=192.85, ...	[ "def", "add_virtual_columns_proper_motion_gal2eq", "(", "self", ",", "long_in", "=", "\"ra\"", ",", "lat_in", "=", "\"dec\"", ",", "pm_long", "=", "\"pm_l\"", ",", "pm_lat", "=", "\"pm_b\"", ",", "pm_long_out", "=", "\"pm_ra\"", ",", "pm_lat_out", "=", "\"pm_dec...	57.642857	28.785714
def integer_based_slice(self, ts): """ Transform a :class:`TimeSlice` into integer indices that numpy can work with Args: ts (slice, TimeSlice): the time slice to translate into integer indices """ if isinstance(ts, slice): try: ...	[ "def", "integer_based_slice", "(", "self", ",", "ts", ")", ":", "if", "isinstance", "(", "ts", ",", "slice", ")", ":", "try", ":", "start", "=", "Seconds", "(", "0", ")", "if", "ts", ".", "start", "is", "None", "else", "ts", ".", "start", "if", "...	36.047619	21.047619
def popUpItem(self, args): """Return the specified item in a pop up menu.""" self.Press() time.sleep(.5) return self._menuItem(self, args)	[ "def", "popUpItem", "(", "self", ",", "", "args", ")", ":", "self", ".", "Press", "(", ")", "time", ".", "sleep", "(", ".5", ")", "return", "self", ".", "_menuItem", "(", "self", ",", "", "args", ")" ]	33.6	10.6
def get_run(session, dag_id, execution_date): """ :param dag_id: DAG ID :type dag_id: unicode :param execution_date: execution date :type execution_date: datetime :return: DagRun corresponding to the given dag_id and execution date if one exists. None otherwis...	[ "def", "get_run", "(", "session", ",", "dag_id", ",", "execution_date", ")", ":", "qry", "=", "session", ".", "query", "(", "DagRun", ")", ".", "filter", "(", "DagRun", ".", "dag_id", "==", "dag_id", ",", "DagRun", ".", "external_trigger", "==", "False",...	36.3125	9.4375
def nacm_rule_list_cmdrule_context(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") nacm = ET.SubElement(config, "nacm", xmlns="urn:ietf:params:xml:ns:yang:ietf-netconf-acm") rule_list = ET.SubElement(nacm, "rule-list") name_key = ET.SubElement(ru...	[ "def", "nacm_rule_list_cmdrule_context", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "nacm", "=", "ET", ".", "SubElement", "(", "config", ",", "\"nacm\"", ",", "xmlns", "=", "\"urn:ietf:param...	45.9375	14.875
def parse_exac_genes(lines): """Parse lines with exac formated genes This is designed to take a dump with genes from exac. This is downloaded from: ftp.broadinstitute.org/pub/ExAC_release//release0.3/functional_gene_constraint/ fordist_cleaned_exac_r03_march16_z_pli...	[ "def", "parse_exac_genes", "(", "lines", ")", ":", "header", "=", "[", "]", "logger", ".", "info", "(", "\"Parsing exac genes...\"", ")", "for", "index", ",", "line", "in", "enumerate", "(", "lines", ")", ":", "if", "index", "==", "0", ":", "header", "...	36.090909	18.909091
def _(c: Concept, cutoff: float = 0.7) -> bool: """Check if a concept has a high grounding score. """ return is_grounded(c) and (top_grounding_score(c) >= cutoff)	[ "def", "_", "(", "c", ":", "Concept", ",", "cutoff", ":", "float", "=", "0.7", ")", "->", "bool", ":", "return", "is_grounded", "(", "c", ")", "and", "(", "top_grounding_score", "(", "c", ")", ">=", "cutoff", ")" ]	42	17.75
def get_default_value(self, check): """ Given a check, return the default value for the check (converted to the right type). If the check doesn't specify a default value then a ``KeyError`` will be raised. """ fun_name, fun_args, fun_kwargs, default = self._parse...	[ "def", "get_default_value", "(", "self", ",", "check", ")", ":", "fun_name", ",", "fun_args", ",", "fun_kwargs", ",", "default", "=", "self", ".", "_parse_with_caching", "(", "check", ")", "if", "default", "is", "None", ":", "raise", "KeyError", "(", "'Che...	39.4	15.933333
def remove_column(conn, table, column_name, schema=None): """ Removes given `activity` jsonb data column key. This function is useful when you are doing schema changes that require removing a column. Let's say you've been using PostgreSQL-Audit for a while for a table called article. Now you want t...	[ "def", "remove_column", "(", "conn", ",", "table", ",", "column_name", ",", "schema", "=", "None", ")", ":", "activity_table", "=", "get_activity_table", "(", "schema", "=", "schema", ")", "remove", "=", "sa", ".", "cast", "(", "column_name", ",", "sa", ...	30.833333	22.214286
def check_lazy_load_wegsegment(f): ''' Decorator function to lazy load a :class:`Wegsegment`. ''' def wrapper(*args): wegsegment = args[0] if ( wegsegment._methode_id is None or wegsegment._geometrie is None or wegsegment._metadata is None ): ...	[ "def", "check_lazy_load_wegsegment", "(", "f", ")", ":", "def", "wrapper", "(", "*", "args", ")", ":", "wegsegment", "=", "args", "[", "0", "]", "if", "(", "wegsegment", ".", "_methode_id", "is", "None", "or", "wegsegment", ".", "_geometrie", "is", "None...	35.105263	16.157895
def new_character(self, name, data=None, kwargs): """Create and return a new :class:`Character`.""" self.add_character(name, data, kwargs) return self.character[name]	[ "def", "new_character", "(", "self", ",", "name", ",", "data", "=", "None", ",", "", "", "kwargs", ")", ":", "self", ".", "add_character", "(", "name", ",", "data", ",", "", "", "kwargs", ")", "return", "self", ".", "character", "[", "name", "]...	47.75	6
def convert(self, to_mag, from_mag=None): """ Converts magnitudes using UBVRIJHKLMNQ photometry in Taurus-Auriga (Kenyon+ 1995) ReadMe+ftp1995ApJS..101..117K Colors for main-sequence stars If from_mag isn't specified the program will cycle through provided magnitudes and choose one. Note that...	[ "def", "convert", "(", "self", ",", "to_mag", ",", "from_mag", "=", "None", ")", ":", "allowed_mags", "=", "\"UBVJIHKLMN\"", "if", "from_mag", ":", "if", "to_mag", "==", "'V'", ":", "# If V mag is requested (1/3) - from mag specified", "return", "self", ".", "_c...	48.488889	26.266667
def _build_date_header_string(self, date_value): """Gets the date_value (may be None, basestring, float or datetime.datetime instance) and returns a valid date string as per RFC 2822.""" if isinstance(date_value, datetime): date_value = time.mktime(date_value.timetuple()) if not isinstance(date_value, base...	[ "def", "_build_date_header_string", "(", "self", ",", "date_value", ")", ":", "if", "isinstance", "(", "date_value", ",", "datetime", ")", ":", "date_value", "=", "time", ".", "mktime", "(", "date_value", ".", "timetuple", "(", ")", ")", "if", "not", "isin...	45	9.636364
def generate_delete_view(self): """Generate class based view for DeleteView""" name = model_class_form(self.model + 'DeleteView') delete_args = dict( model=self.get_model_class, template_name=self.get_template('delete'), permissions=self.view_permission('dele...	[ "def", "generate_delete_view", "(", "self", ")", ":", "name", "=", "model_class_form", "(", "self", ".", "model", "+", "'DeleteView'", ")", "delete_args", "=", "dict", "(", "model", "=", "self", ".", "get_model_class", ",", "template_name", "=", "self", ".",...	43.294118	19.764706
def _messageFromSender(self, sender, messageID): """ Locate a previously queued message by a given sender and messageID. """ return self.store.findUnique( _QueuedMessage, AND(_QueuedMessage.senderUsername == sender.localpart, _QueuedMessage.senderD...	[ "def", "_messageFromSender", "(", "self", ",", "sender", ",", "messageID", ")", ":", "return", "self", ".", "store", ".", "findUnique", "(", "_QueuedMessage", ",", "AND", "(", "_QueuedMessage", ".", "senderUsername", "==", "sender", ".", "localpart", ",", "_...	41.6	13.6
def flush(name, table='filter', family='ipv4', **kwargs): ''' .. versionadded:: 2014.1.0 Flush current iptables state table The table that owns the chain that should be modified family Networking family, either ipv4 or ipv6 ''' ret = {'name': name, 'changes': {...	[ "def", "flush", "(", "name", ",", "table", "=", "'filter'", ",", "family", "=", "'ipv4'", ",", "", "", "kwargs", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'changes'", ":", "{", "}", ",", "'result'", ":", "None", ",", "'comment'", ...	26.697674	22.930233
def months_per_hour(self): """A list of tuples representing months per hour in this analysis period.""" month_hour = [] hour_range = xrange(self.st_hour, self.end_hour + 1) for month in self.months_int: month_hour.extend([(month, hr) for hr in hour_range]) return mont...	[ "def", "months_per_hour", "(", "self", ")", ":", "month_hour", "=", "[", "]", "hour_range", "=", "xrange", "(", "self", ".", "st_hour", ",", "self", ".", "end_hour", "+", "1", ")", "for", "month", "in", "self", ".", "months_int", ":", "month_hour", "."...	45.714286	13.428571
def populateFromRow(self, featureSetRecord): """ Populates the instance variables of this FeatureSet from the specified DB row. """ self._dbFilePath = featureSetRecord.dataurl self.setAttributesJson(featureSetRecord.attributes) self.populateFromFile(self._dbFilePa...	[ "def", "populateFromRow", "(", "self", ",", "featureSetRecord", ")", ":", "self", ".", "_dbFilePath", "=", "featureSetRecord", ".", "dataurl", "self", ".", "setAttributesJson", "(", "featureSetRecord", ".", "attributes", ")", "self", ".", "populateFromFile", "(", ...	39.5	13
def to_timedelta(value, strict=True): """ converts duration string to timedelta strict=True (by default) raises StrictnessError if either hours, minutes or seconds in duration string exceed allowed values """ if isinstance(value, int): return timedelta(seconds=value) # assuming it's se...	[ "def", "to_timedelta", "(", "value", ",", "strict", "=", "True", ")", ":", "if", "isinstance", "(", "value", ",", "int", ")", ":", "return", "timedelta", "(", "seconds", "=", "value", ")", "# assuming it's seconds", "elif", "isinstance", "(", "value", ",",...	34.086957	14.434783
def toLily(self): ''' Method which converts the object instance, its attributes and children to a string of lilypond code :return: str of lilypond code ''' lilystring = "" if self.duration > 0: lilystring += "r" + str(self.duration) return lilystring	[ "def", "toLily", "(", "self", ")", ":", "lilystring", "=", "\"\"", "if", "self", ".", "duration", ">", "0", ":", "lilystring", "+=", "\"r\"", "+", "str", "(", "self", ".", "duration", ")", "return", "lilystring" ]	31	24.4
def fromkeys (cls, iterable, value=None): """Construct new caseless dict from given data.""" d = cls() for k in iterable: dict.__setitem__(d, k.lower(), value) return d	[ "def", "fromkeys", "(", "cls", ",", "iterable", ",", "value", "=", "None", ")", ":", "d", "=", "cls", "(", ")", "for", "k", "in", "iterable", ":", "dict", ".", "__setitem__", "(", "d", ",", "k", ".", "lower", "(", ")", ",", "value", ")", "retur...	34.5	11.833333
def _do_code_blocks(self, text): """Process Markdown `<pre><code>` blocks.""" code_block_re = re.compile(r''' (?:\n\n\|\A\n?) ( # $1 = the code block -- one or more lines, starting with a space/tab (?: (?:[ ]{%d} \| \t) # Lines must star...	[ "def", "_do_code_blocks", "(", "self", ",", "text", ")", ":", "code_block_re", "=", "re", ".", "compile", "(", "r'''\n (?:\\n\\n\|\\A\\n?)\n ( # $1 = the code block -- one or more lines, starting with a space/tab\n (?:\n (?:[...	44.714286	22.714286
def get_undefined_namespace_names(graph: BELGraph, namespace: str) -> Set[str]: """Get the names from a namespace that wasn't actually defined. :return: The set of all names from the undefined namespace """ return { exc.name for _, exc, _ in graph.warnings if isinstance(exc, Und...	[ "def", "get_undefined_namespace_names", "(", "graph", ":", "BELGraph", ",", "namespace", ":", "str", ")", "->", "Set", "[", "str", "]", ":", "return", "{", "exc", ".", "name", "for", "_", ",", "exc", ",", "_", "in", "graph", ".", "warnings", "if", "i...	37.1	23.3
def __looks_like_html(response): """Guesses entity type when Content-Type header is missing. Since Content-Type is not strictly required, some servers leave it out. """ text = response.text.lstrip().lower() return text.startswith('<html') or text.startswith('<!doctype')	[ "def", "__looks_like_html", "(", "response", ")", ":", "text", "=", "response", ".", "text", ".", "lstrip", "(", ")", ".", "lower", "(", ")", "return", "text", ".", "startswith", "(", "'<html'", ")", "or", "text", ".", "startswith", "(", "'<!doctype'", ...	50.833333	13.833333
def request(self, method, apikey, args, *kwargs): """ Make a xml-rpc call to remote API. """ dry_run = kwargs.get('dry_run', False) return_dry_run = kwargs.get('return_dry_run', False) if return_dry_run: args[-1]['--dry-run'] = True try: func = getattr(...	[ "def", "request", "(", "self", ",", "method", ",", "apikey", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "dry_run", "=", "kwargs", ".", "get", "(", "'dry_run'", ",", "False", ")", "return_dry_run", "=", "kwargs", ".", "get", "(", "'return_dr...	42.347826	12.26087
def energy_prof(step): """Energy flux. This computation takes sphericity into account if necessary. Args: step (:class:`~stagpy.stagyydata._Step`): a step of a StagyyData instance. Returns: tuple of :class:`numpy.array`: the energy flux and the radial position at wh...	[ "def", "energy_prof", "(", "step", ")", ":", "diff", ",", "rad", "=", "diffs_prof", "(", "step", ")", "adv", ",", "_", "=", "advts_prof", "(", "step", ")", "return", "(", "diff", "+", "np", ".", "append", "(", "adv", ",", "0", ")", ")", ",", "r...	29.333333	19.866667
def serialize(self): """ Converts the credentials to a percent encoded string to be stored for later use. :returns: :class:`string` """ if self.provider_id is None: raise ConfigError( 'To serialize credentials you need to specify...	[ "def", "serialize", "(", "self", ")", ":", "if", "self", ".", "provider_id", "is", "None", ":", "raise", "ConfigError", "(", "'To serialize credentials you need to specify a '", "'unique integer under the \"id\" key in the config '", "'for each provider!'", ")", "# Get the pr...	29.9	20.966667
def batch_flatten(x): """ Flatten the tensor except the first dimension. """ shape = x.get_shape().as_list()[1:] if None not in shape: return tf.reshape(x, [-1, int(np.prod(shape))]) return tf.reshape(x, tf.stack([tf.shape(x)[0], -1]))	[ "def", "batch_flatten", "(", "x", ")", ":", "shape", "=", "x", ".", "get_shape", "(", ")", ".", "as_list", "(", ")", "[", "1", ":", "]", "if", "None", "not", "in", "shape", ":", "return", "tf", ".", "reshape", "(", "x", ",", "[", "-", "1", ",...	32.5	9.5
def is_thin_archieve(self): """ Return the is thin archieve attribute of the BFD file being processed. """ if not self._ptr: raise BfdException("BFD not initialized") return _bfd.get_bfd_attribute( self._ptr, BfdAttributes.IS_THIN_ARCHIEVE)	[ "def", "is_thin_archieve", "(", "self", ")", ":", "if", "not", "self", ".", "_ptr", ":", "raise", "BfdException", "(", "\"BFD not initialized\"", ")", "return", "_bfd", ".", "get_bfd_attribute", "(", "self", ".", "_ptr", ",", "BfdAttributes", ".", "IS_THIN_ARC...	33	15
def power(self, n): """Return the compose of a QuantumChannel with itself n times. Args: n (int): compute the matrix power of the superoperator matrix. Returns: SuperOp: the n-times composition channel as a SuperOp object. Raises: QiskitError: if th...	[ "def", "power", "(", "self", ",", "n", ")", ":", "if", "not", "isinstance", "(", "n", ",", "(", "int", ",", "np", ".", "integer", ")", ")", ":", "raise", "QiskitError", "(", "\"Can only power with integer powers.\"", ")", "if", "self", ".", "_input_dim",...	40.818182	23.409091
def _scheduled_check_for_summaries(self): """Present the results if they have become available or timed out.""" if self._analysis_process is None: return # handle time out timed_out = time.time() - self._analyze_start_time > self.time_limit if timed_out: s...	[ "def", "_scheduled_check_for_summaries", "(", "self", ")", ":", "if", "self", ".", "_analysis_process", "is", "None", ":", "return", "# handle time out", "timed_out", "=", "time", ".", "time", "(", ")", "-", "self", ".", "_analyze_start_time", ">", "self", "."...	47.217391	17.956522
def _template(node_id, value=None): "Check if a template is assigned to it and render that with the value" result = [] select_template_from_node = fetch_query_string('select_template_from_node.sql') try: result = db.execute(text(select_template_from_node), node_id=node_id) template_resul...	[ "def", "_template", "(", "node_id", ",", "value", "=", "None", ")", ":", "result", "=", "[", "]", "select_template_from_node", "=", "fetch_query_string", "(", "'select_template_from_node.sql'", ")", "try", ":", "result", "=", "db", ".", "execute", "(", "text",...	40.1	21.7
def validate_character_instance_valid_for_arc(sender, instance, action, reverse, pk_set, args, *kwargs): ''' Evaluate attempts to assign a character instance to ensure it is from same outline. ''' if action == 'pre_add': if reverse: # Fetch arc definition through link. ...	[ "def", "validate_character_instance_valid_for_arc", "(", "sender", ",", "instance", ",", "action", ",", "reverse", ",", "pk_set", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "action", "==", "'pre_add'", ":", "if", "reverse", ":", "# Fetch arc ...	50.470588	31.058824
def delete(path, regex=None, recurse=False, test=False): """Deletes the file or directory at `path`. If `path` is a directory and `regex` is provided, matching files will be deleted; `recurse` controls whether subdirectories are recursed. A list of deleted items is returned. If `test` is true, nothing w...	[ "def", "delete", "(", "path", ",", "regex", "=", "None", ",", "recurse", "=", "False", ",", "test", "=", "False", ")", ":", "deleted", "=", "[", "]", "if", "op", ".", "isfile", "(", "path", ")", ":", "if", "not", "test", ":", "os", ".", "remove...	39.4	15.04
def one_version(self, index=0): ''' Leaves only one version for each object. :param index: List-like index of the version. 0 == first; -1 == last ''' def prep(df): start = sorted(df._start.tolist())[index] return df[df._start == start] return pd...	[ "def", "one_version", "(", "self", ",", "index", "=", "0", ")", ":", "def", "prep", "(", "df", ")", ":", "start", "=", "sorted", "(", "df", ".", "_start", ".", "tolist", "(", ")", ")", "[", "index", "]", "return", "df", "[", "df", ".", "_start"...	33.272727	23.454545
def get_exif_data(filename): """Return a dict with the raw EXIF data.""" logger = logging.getLogger(__name__) img = _read_image(filename) try: exif = img._getexif() or {} except ZeroDivisionError: logger.warning('Failed to read EXIF data.') return None data = {TAGS.ge...	[ "def", "get_exif_data", "(", "filename", ")", ":", "logger", "=", "logging", ".", "getLogger", "(", "__name__", ")", "img", "=", "_read_image", "(", "filename", ")", "try", ":", "exif", "=", "img", ".", "_getexif", "(", ")", "or", "{", "}", "except", ...	29.125	20.25
def audio_detection_sensitivity(self): """Sensitivity level of Camera audio detection.""" if not self.triggers: return None for trigger in self.triggers: if trigger.get("type") != "audioAmplitude": continue sensitivity = trigger.get("sensitiv...	[ "def", "audio_detection_sensitivity", "(", "self", ")", ":", "if", "not", "self", ".", "triggers", ":", "return", "None", "for", "trigger", "in", "self", ".", "triggers", ":", "if", "trigger", ".", "get", "(", "\"type\"", ")", "!=", "\"audioAmplitude\"", "...	29.357143	17.071429
async def _on_status_change(self, update): """Update a service that has its status updated.""" info = update['payload'] new_number = info['new_status'] name = update['service'] if name not in self.services: return with self._state_lock: is_chang...	[ "async", "def", "_on_status_change", "(", "self", ",", "update", ")", ":", "info", "=", "update", "[", "'payload'", "]", "new_number", "=", "info", "[", "'new_status'", "]", "name", "=", "update", "[", "'service'", "]", "if", "name", "not", "in", "self",...	36.294118	20.117647
def generate_csv(path, out): """\ Walks through the `path` and generates the CSV file `out` """ def is_berlin_cable(filename): return 'BERLIN' in filename writer = UnicodeWriter(open(out, 'wb'), delimiter=';') writer.writerow(('Reference ID', 'Created', 'Origin', 'Subject')) for cabl...	[ "def", "generate_csv", "(", "path", ",", "out", ")", ":", "def", "is_berlin_cable", "(", "filename", ")", ":", "return", "'BERLIN'", "in", "filename", "writer", "=", "UnicodeWriter", "(", "open", "(", "out", ",", "'wb'", ")", ",", "delimiter", "=", "';'"...	46.7	17.8
def concatenate(self, tpl, axis=None): """ Concatenates sparse tensors. Parameters ---------- tpl : tuple of sparse tensors Tensors to be concatenated. axis : int, optional Axis along which concatenation should take place """ if ...	[ "def", "concatenate", "(", "self", ",", "tpl", ",", "axis", "=", "None", ")", ":", "if", "axis", "is", "None", ":", "raise", "NotImplementedError", "(", "'Sparse tensor concatenation without axis argument is not supported'", ")", "T", "=", "self", "for", "i", "i...	30.631579	14.842105
def read_reporting_revisions_get(self, project=None, fields=None, types=None, continuation_token=None, start_date_time=None, include_identity_ref=None, include_deleted=None, include_tag_ref=None, include_latest_only=None, expand=None, include_discussion_changes_only=None, max_page_size=None): """ReadReportingRe...	[ "def", "read_reporting_revisions_get", "(", "self", ",", "project", "=", "None", ",", "fields", "=", "None", ",", "types", "=", "None", ",", "continuation_token", "=", "None", ",", "start_date_time", "=", "None", ",", "include_identity_ref", "=", "None", ",", ...	84.666667	48.431373
def post_parse_response(self, response, **kwargs): """ Add scope claim to response, from the request, if not present in the response :param response: The response :param kwargs: Extra Keyword arguments :return: A possibly augmented response """ if "scope...	[ "def", "post_parse_response", "(", "self", ",", "response", ",", "", "", "kwargs", ")", ":", "if", "\"scope\"", "not", "in", "response", ":", "try", ":", "_key", "=", "kwargs", "[", "'state'", "]", "except", "KeyError", ":", "pass", "else", ":", "if"...	32.083333	16
def _AsMessageList(msg): """Convert the provided list-as-JsonValue to a list.""" # This really needs to live in extra_types, but extra_types needs # to import this file to be able to register codecs. # TODO(craigcitro): Split out a codecs module and fix this ugly # import. from apitools.base.py ...	[ "def", "_AsMessageList", "(", "msg", ")", ":", "# This really needs to live in extra_types, but extra_types needs", "# to import this file to be able to register codecs.", "# TODO(craigcitro): Split out a codecs module and fix this ugly", "# import.", "from", "apitools", ".", "base", "."...	38.217391	16.869565
def run(self): """ Returns the sum of unread messages across all registered backends """ unread = 0 current_unread = 0 for id, backend in enumerate(self.backends): temp = backend.unread or 0 unread = unread + temp if id == self.current_...	[ "def", "run", "(", "self", ")", ":", "unread", "=", "0", "current_unread", "=", "0", "for", "id", ",", "backend", "in", "enumerate", "(", "self", ".", "backends", ")", ":", "temp", "=", "backend", ".", "unread", "or", "0", "unread", "=", "unread", ...	29.545455	18.575758
def draw_rand_pos(self, radius, z_min, z_max, min_r=np.array([0]), min_cell_interdist=10., **args): """ Draw some random location within radius, z_min, z_max, and constrained by min_r and the minimum cell interdistance. Returned argument is a list of dicts [{'xpos',...	[ "def", "draw_rand_pos", "(", "self", ",", "radius", ",", "z_min", ",", "z_max", ",", "min_r", "=", "np", ".", "array", "(", "[", "0", "]", ")", ",", "min_cell_interdist", "=", "10.", ",", "", "", "args", ")", ":", "x", "=", "(", "np", ".", "r...	36.472527	20.692308
def source(self, value): """ Setter for self.__source attribute. :param value: Attribute value. :type value: unicode """ if value is not None: assert type(value) is unicode, "'{0}' attribute: '{1}' type is not 'unicode'!".format( "source"...	[ "def", "source", "(", "self", ",", "value", ")", ":", "if", "value", "is", "not", "None", ":", "assert", "type", "(", "value", ")", "is", "unicode", ",", "\"'{0}' attribute: '{1}' type is not 'unicode'!\"", ".", "format", "(", "\"source\"", ",", "value", ")"...	35.230769	21.230769
def make_internal_signing_service(config, entity_id): """ Given configuration initiate an InternalSigningService instance :param config: The signing service configuration :param entity_id: The entity identifier :return: A InternalSigningService instance """ _args = dict([(k, v) for k, v in...	[ "def", "make_internal_signing_service", "(", "config", ",", "entity_id", ")", ":", "_args", "=", "dict", "(", "[", "(", "k", ",", "v", ")", "for", "k", ",", "v", "in", "config", ".", "items", "(", ")", "if", "k", "in", "KJ_SPECS", "]", ")", "_kj", ...	32.692308	17.615385
def dvds_top_rentals(self, **kwargs): """Gets the current opening movies from the API. Args: limit (optional): limits the number of movies returned, default=10 country (optional): localized data for selected country, default="us" Returns: A dict respresentation of...	[ "def", "dvds_top_rentals", "(", "self", ",", "", "", "kwargs", ")", ":", "path", "=", "self", ".", "_get_path", "(", "'dvds_top_rentals'", ")", "response", "=", "self", ".", "_GET", "(", "path", ",", "kwargs", ")", "self", ".", "_set_attrs_to_values", ...	34.133333	20.466667
def synchronize(self, pid, vendorSpecific=None): """See Also: synchronizeResponse() Args: pid: vendorSpecific: Returns: """ response = self.synchronizeResponse(pid, vendorSpecific) return self._read_boolean_response(response)	[ "def", "synchronize", "(", "self", ",", "pid", ",", "vendorSpecific", "=", "None", ")", ":", "response", "=", "self", ".", "synchronizeResponse", "(", "pid", ",", "vendorSpecific", ")", "return", "self", ".", "_read_boolean_response", "(", "response", ")" ]	32.5	18.5
def get_edge_citation(self, u: BaseEntity, v: BaseEntity, key: str) -> Optional[CitationDict]: """Get the citation for a given edge.""" return self._get_edge_attr(u, v, key, CITATION)	[ "def", "get_edge_citation", "(", "self", ",", "u", ":", "BaseEntity", ",", "v", ":", "BaseEntity", ",", "key", ":", "str", ")", "->", "Optional", "[", "CitationDict", "]", ":", "return", "self", ".", "_get_edge_attr", "(", "u", ",", "v", ",", "key", ...	65.666667	23
def spher_harms(l, m, inclination): """Return spherical harmonic polarizations """ # FIXME: we are using spin -2 weighted spherical harmonics for now, # when possible switch to spheroidal harmonics. Y_lm = lal.SpinWeightedSphericalHarmonic(inclination, 0., -2, l, m).real Y_lminusm = lal.SpinWei...	[ "def", "spher_harms", "(", "l", ",", "m", ",", "inclination", ")", ":", "# FIXME: we are using spin -2 weighted spherical harmonics for now,", "# when possible switch to spheroidal harmonics.", "Y_lm", "=", "lal", ".", "SpinWeightedSphericalHarmonic", "(", "inclination", ",", ...	39.416667	18.333333
def delete_all(self, model_class): '''Drop all records from the table model_class.__name__.lower() ''' assert hasattr(model_class, '_fields'), 'Not a valid model class' table = model_class.__name__.lower() with Session() as conn: SQL = f'DELETE FROM {table}' ...	[ "def", "delete_all", "(", "self", ",", "model_class", ")", ":", "assert", "hasattr", "(", "model_class", ",", "'_fields'", ")", ",", "'Not a valid model class'", "table", "=", "model_class", ".", "__name__", ".", "lower", "(", ")", "with", "Session", "(", ")...	36.7	16.9
def json_data(self, instance, default=None): """Get a JSON compatible value """ value = self.get(instance) return value or default	[ "def", "json_data", "(", "self", ",", "instance", ",", "default", "=", "None", ")", ":", "value", "=", "self", ".", "get", "(", "instance", ")", "return", "value", "or", "default" ]	31.6	3.8
def clear_rr_ce_entries(self): # type: () -> None ''' A method to clear out all of the extent locations of all Rock Ridge Continuation Entries that the PVD is tracking. This can be used to reset all data before assigning new data. Parameters: None. Retu...	[ "def", "clear_rr_ce_entries", "(", "self", ")", ":", "# type: () -> None", "if", "not", "self", ".", "_initialized", ":", "raise", "pycdlibexception", ".", "PyCdlibInternalError", "(", "'This Primary Volume Descriptor is not yet initialized'", ")", "for", "block", "in", ...	33.411765	24.470588
def _gen_3spec(op, path, xattr=False): """ Returns a Spec tuple suitable for passing to the underlying C extension. This variant is called for operations that lack an input value. :param str path: The path to fetch :param bool xattr: Whether this is an extended attribute :return: a spec suitabl...	[ "def", "_gen_3spec", "(", "op", ",", "path", ",", "xattr", "=", "False", ")", ":", "flags", "=", "0", "if", "xattr", ":", "flags", "\|=", "_P", ".", "SDSPEC_F_XATTR", "return", "Spec", "(", "op", ",", "path", ",", "flags", ")" ]	35	17.307692
def handle_request(self, request, **resources): """ Get a method for request and execute. :return object: method result """ if not request.method in self._meta.callmap.keys(): raise HttpError( 'Unknown or unsupported method \'%s\'' % request.method, ...	[ "def", "handle_request", "(", "self", ",", "request", ",", "", "", "resources", ")", ":", "if", "not", "request", ".", "method", "in", "self", ".", "_meta", ".", "callmap", ".", "keys", "(", ")", ":", "raise", "HttpError", "(", "'Unknown or unsupported...	34.625	19.375
def run_interactive(query, editor=None, just_count=False, default_no=False): """ Asks the user about each patch suggested by the result of the query. @param query An instance of the Query class. @param editor Name of editor to use for manual intervention, e.g. 'vim'...	[ "def", "run_interactive", "(", "query", ",", "editor", "=", "None", ",", "just_count", "=", "False", ",", "default_no", "=", "False", ")", ":", "global", "yes_to_all", "# Load start from bookmark, if appropriate.", "bookmark", "=", "_load_bookmark", "(", ")", "if"...	37.489796	18.591837
def execute_as(collector): """Execute a command (after the --) as an assumed role (specified by --artifact)""" # Gonna assume role anyway... collector.configuration['amazon']._validated = True # Find the arn we want to assume account_id = collector.configuration['accounts'][collector.configuration[...	[ "def", "execute_as", "(", "collector", ")", ":", "# Gonna assume role anyway...", "collector", ".", "configuration", "[", "'amazon'", "]", ".", "_validated", "=", "True", "# Find the arn we want to assume", "account_id", "=", "collector", ".", "configuration", "[", "'...	46.090909	25.772727
def main(argv=None): """Main entry point for the cdstar CLI.""" args = docopt(__doc__, version=pycdstar.__version__, argv=argv, options_first=True) subargs = [args['<command>']] + args['<args>'] if args['<command>'] in ['help', None]: cmd = None if len(subargs) > 1: cmd = CO...	[ "def", "main", "(", "argv", "=", "None", ")", ":", "args", "=", "docopt", "(", "__doc__", ",", "version", "=", "pycdstar", ".", "__version__", ",", "argv", "=", "argv", ",", "options_first", "=", "True", ")", "subargs", "=", "[", "args", "[", "'<comm...	28.238095	16.238095
def image_member(self): """ Returns a json-schema document that represents an image member entity. (a container of member entities). """ uri = "/%s/member" % self.uri_base resp, resp_body = self.api.method_get(uri) return resp_body	[ "def", "image_member", "(", "self", ")", ":", "uri", "=", "\"/%s/member\"", "%", "self", ".", "uri_base", "resp", ",", "resp_body", "=", "self", ".", "api", ".", "method_get", "(", "uri", ")", "return", "resp_body" ]	35	10.5
def add_code_challenge(request_args, service, **kwargs): """ PKCE RFC 7636 support To be added as a post_construct method to an :py:class:`oidcservice.oidc.service.Authorization` instance :param service: The service that uses this function :param request_args: Set of request arguments :para...	[ "def", "add_code_challenge", "(", "request_args", ",", "service", ",", "", "", "kwargs", ")", ":", "try", ":", "cv_len", "=", "service", ".", "service_context", ".", "config", "[", "'code_challenge'", "]", "[", "'length'", "]", "except", "KeyError", ":", ...	33.5	18.547619

def style_classpath(self, products, scheduler): """Returns classpath as paths for scalastyle.""" classpath_entries = self._tool_classpath('scalastyle', products, scheduler) return [classpath_entry.path for classpath_entry in classpath_entries]

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63

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def is_canonical_address(address: Any) -> bool: """ Returns `True` if the `value` is an address in its canonical form. """ if not is_bytes(address) or len(address) != 20: return False return address == to_canonical_address(address)

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def build_columns(self, X, verbose=False): """construct the model matrix columns for the term Parameters ---------- X : array-like Input dataset with n rows verbose : bool whether to show warnings Returns ------- scipy sparse arr...

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def cancel(self, job_ids): """Cancel the jobs specified by a list of job ids. Parameters ---------- job_ids : list of str List of of job identifiers Returns ------- list of bool Each entry in the list will contain False if the operation f...

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def get_link_mappings(link_id, link_2_id=None, **kwargs): """ Get all the resource attribute mappings in a network. If another network is specified, only return the mappings between the two networks. """ qry = db.DBSession.query(ResourceAttrMap).filter( or_( and_( ...

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38.48

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def strip_prompt(self, a_string): """Strip the trailing router prompt from the output.""" expect_string = r"^(OK|ERROR|Command not recognized\.)$" response_list = a_string.split(self.RESPONSE_RETURN) last_line = response_list[-1] if re.search(expect_string, last_line): ...

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45.333333

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def learn(self, *args, **kwargs): """[DEPRECATED] Use 'fit_predict'. """ warnings.warn("learn is deprecated, {}.fit_predict " "instead".format(self.__class__.__name__)) return self.fit_predict(*args, **kwargs)

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36.857143

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def optimal_t(self, seq_p, seq_ch, pattern_multiplicity=None, ignore_gaps=False): ''' Find the optimal distance between the two sequences Parameters ---------- seq_p : character array Parent sequence seq_c : character array Child sequence ...

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38.407407

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def create_server_rackspace(connection, distribution, disk_name, disk_size, ami, region, key_pair, instance_type, ...

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33.723404

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def set_property_filter(filter_proto, name, op, value): """Set property filter contraint in the given datastore.Filter proto message. Args: filter_proto: datastore.Filter proto message name: property name op: datastore.PropertyFilter.Operation value: property value Returns: the same datastor...

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26.818182

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def start(self, positionals=None): '''start the helper flow. We check helper system configurations to determine components that should be collected for the submission. This is where the client can also pass on any extra (positional) arguments in a list from the user. '''...

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45.666667

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def clear_scroll(self, scroll_id=None, body=None, **query_params): """ Clear the scroll request created by specifying the scroll parameter to search. `<http://www.elastic.co/guide/en/elasticsearch/reference/current/search-request-scroll.html>`_ :param scroll_id: A comma-separated...

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50.052632

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def unfollow(user, obj): """ Make a user unfollow an object """ try: follow = Follow.objects.get_follows(obj).get(user=user) follow.delete() return follow except Follow.DoesNotExist: pass

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28.125

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def cfgGetBool(theObj, name, dflt): """ Get a stringified val from a ConfigObj obj and return it as bool """ strval = theObj.get(name, None) if strval is None: return dflt return strval.lower().strip() == 'true'

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38.333333

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def strip_between(self, string, start, end): """Deletes everything between regexes start and end from string""" regex = start + r'.*?' + end + r'\s*' res = re.sub(regex, '', string, flags=re.DOTALL|re.IGNORECASE|re.MULTILINE) return res

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47.333333

9.333333

def get_template_folder(): """Get path to the folder where th HTML templates are.""" cfg = get_project_configuration() if 'templates' not in cfg: home = os.path.expanduser("~") rcfile = os.path.join(home, ".hwrtrc") cfg['templates'] = pkg_resources.resource_filename('hwrt', ...

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44.909091

11.363636

def source_expand(self, source): '''Expand the wildcards for an S3 path. This emulates the shall expansion for wildcards if the input is local path. ''' result = [] if not isinstance(source, list): source = [source] for src in source: # XXX Hacky: We need to disable recursive wh...

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32.818182

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def tokenize(self, sentence, normalize=True, is_feature=False, is_surface=False, return_list=False, func_normalizer=text_preprocess.normalize_text): # type: (text_type, bool, bool, bool, bool, Callable[[str],str]) -> Union[List...

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39.947368

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def validate(self, collection: BioCCollection): """Validate a single collection.""" for document in collection.documents: self.validate_doc(document)

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43.5

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async def download_cot_artifacts(chain): """Call ``download_cot_artifact`` in parallel for each "upstreamArtifacts". Optional artifacts are allowed to not be downloaded. Args: chain (ChainOfTrust): the chain of trust object Returns: list: list of full paths to downloaded artifacts. Fa...

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40.410256

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def time_plots(df, path, title=None, color="#4CB391", figformat="png", log_length=False, plot_settings=None): """Making plots of time vs read length, time vs quality and cumulative yield.""" dfs = check_valid_time_and_sort(df, "start_time") logging.info("Nanoplotter: Creating timeplots using ...

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57.818182

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def stop_broadcast(self, broadcast_id): """ Use this method to stop a live broadcast of an OpenTok session :param String broadcast_id: The ID of the broadcast you want to stop :rtype A Broadcast object, which contains information of the broadcast: id, sessionId projectId, creat...

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40.387097

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def download_patric_genomes(self, ids, force_rerun=False): """Download genome files from PATRIC given a list of PATRIC genome IDs and load them as strains. Args: ids (str, list): PATRIC ID or list of PATRIC IDs force_rerun (bool): If genome files should be downloaded again even ...

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47.708333

28.833333

def check_access_token(self, request_token): """Checks that the token contains only safe characters and is no shorter than lower and no longer than upper. """ lower, upper = self.access_token_length return (set(request_token) <= self.safe_characters and lower <= l...

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48.714286

9.714286

def demo(nums=[]): "Print a few usage examples on stdout." nums = nums or [3, 1, 4, 1, 5, 9, 2, 6] fmt = lambda num: '{0:g}'.format(num) if isinstance(num, (float, int)) else 'None' nums1 = list(map(fmt, nums)) if __name__ == '__main__': prog = sys.argv[0] else: prog = 'sparkli...

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37.431818

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def retry(self, f, *args, **kwargs): """ Retries the given function self.tries times on NetworkErros """ backoff = random.random() / 100 # 5ms on average for _ in range(self.tries - 1): try: return f(*args, **kwargs) except NetworkError: ...

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33.833333

8.833333

def get_coinc_def_id(self, search, search_coinc_type, create_new = True, description = None): """ Return the coinc_def_id for the row in the table whose search string and search_coinc_type integer have the values given. If a matching row is not found, the default behaviour is to create a new row and return t...

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39.806452

20.580645

def doDirectPayment(self, params): """Call PayPal DoDirectPayment method.""" defaults = {"method": "DoDirectPayment", "paymentaction": "Sale"} required = ["creditcardtype", "acct", "expdate", "cvv2", "ipaddress", ...

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40.444444

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def doc_dir(self): """The absolute directory of the document""" from os.path import abspath if not self.ref: return None u = parse_app_url(self.ref) return abspath(dirname(u.path))

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25.111111

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def delete_as(access_token, subscription_id, resource_group, as_name): '''Delete availability set. Args: access_token (str): A valid Azure authentication token. subscription_id (str): Azure subscription id. resource_group (str): Azure resource group name. as_name (str): Name of ...

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39.555556

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def retrofitted(self): """ :returns: the asset retrofitted value """ return self.calc('structural', {'structural': self._retrofitted}, self.area, self.number)

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35

10.666667

def horizontal(y, xmin=0, xmax=1, color=None, width=None, dash=None, opacity=None): """Draws a horizontal line from `xmin` to `xmax`. Parameters ---------- xmin : int, optional xmax : int, optional color : str, optional width : number, optional Returns ------- Chart """ ...

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22.407407

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def calc_ethsw_port(self, port_num, port_def): """ Split and create the port entry for an Ethernet Switch :param port_num: port number :type port_num: str or int :param str port_def: port definition """ # Port String - access 1 SW2 1 # 0: type 1: vlan 2: ...

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def get_one(cls, execution_date, key=None, task_id=None, dag_id=None, include_prior_dates=False, session=None): """ Retrieve an XCom value, optionally meeting certain criteria. TODO: "pickling" has be...

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def dictfetchall(cursor): """Returns all rows from a cursor as a dict (rather than a headerless table) From Django Documentation: https://docs.djangoproject.com/en/dev/topics/db/sql/ """ desc = cursor.description return [dict(zip([col[0] for col in desc], row)) for row in cursor.fetchall()]

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def GetFileSystemTypeIndicators(cls, path_spec, resolver_context=None): """Determines if a file contains a supported file system types. Args: path_spec (PathSpec): path specification. resolver_context (Optional[Context]): resolver context, where None represents the built-in context which ...

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def flag_forgotten_entries(session, today=None): """Flag any entries from previous days where users forgot to sign out. :param session: SQLAlchemy session through which to access the database. :param today: (optional) The current date as a `datetime.date` object. Used for testing. """ # noqa to...

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def generate_action(args): """Generate action.""" controller = args.get('<controller>') action = args.get('<action>') with_template = args.get('-t') current_path = os.getcwd() logger.info('Start generating action.') controller_file_path = os.path.join(current_path, 'application/controllers...

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def texture_from_image(renderer, image_name): """Create an SDL2 Texture from an image file""" soft_surface = ext.load_image(image_name) texture = SDL_CreateTextureFromSurface(renderer.renderer, soft_surface) SDL_FreeSurface(soft_surface) return texture

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def add_virtual_columns_proper_motion_gal2eq(self, long_in="ra", lat_in="dec", pm_long="pm_l", pm_lat="pm_b", pm_long_out="pm_ra", pm_lat_out="pm_dec", name_prefix="__proper_motion_gal2eq", right_ascension_galactic_pole=192.85, ...

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def integer_based_slice(self, ts): """ Transform a :class:`TimeSlice` into integer indices that numpy can work with Args: ts (slice, TimeSlice): the time slice to translate into integer indices """ if isinstance(ts, slice): try: ...

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36.047619

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def popUpItem(self, *args): """Return the specified item in a pop up menu.""" self.Press() time.sleep(.5) return self._menuItem(self, *args)

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def get_run(session, dag_id, execution_date): """ :param dag_id: DAG ID :type dag_id: unicode :param execution_date: execution date :type execution_date: datetime :return: DagRun corresponding to the given dag_id and execution date if one exists. None otherwis...

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def nacm_rule_list_cmdrule_context(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") nacm = ET.SubElement(config, "nacm", xmlns="urn:ietf:params:xml:ns:yang:ietf-netconf-acm") rule_list = ET.SubElement(nacm, "rule-list") name_key = ET.SubElement(ru...

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def parse_exac_genes(lines): """Parse lines with exac formated genes This is designed to take a dump with genes from exac. This is downloaded from: ftp.broadinstitute.org/pub/ExAC_release//release0.3/functional_gene_constraint/ fordist_cleaned_exac_r03_march16_z_pli...

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def _(c: Concept, cutoff: float = 0.7) -> bool: """Check if a concept has a high grounding score. """ return is_grounded(c) and (top_grounding_score(c) >= cutoff)

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def get_default_value(self, check): """ Given a check, return the default value for the check (converted to the right type). If the check doesn't specify a default value then a ``KeyError`` will be raised. """ fun_name, fun_args, fun_kwargs, default = self._parse...

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def remove_column(conn, table, column_name, schema=None): """ Removes given `activity` jsonb data column key. This function is useful when you are doing schema changes that require removing a column. Let's say you've been using PostgreSQL-Audit for a while for a table called article. Now you want t...

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def check_lazy_load_wegsegment(f): ''' Decorator function to lazy load a :class:`Wegsegment`. ''' def wrapper(*args): wegsegment = args[0] if ( wegsegment._methode_id is None or wegsegment._geometrie is None or wegsegment._metadata is None ): ...

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def new_character(self, name, data=None, **kwargs): """Create and return a new :class:`Character`.""" self.add_character(name, data, **kwargs) return self.character[name]

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def convert(self, to_mag, from_mag=None): """ Converts magnitudes using UBVRIJHKLMNQ photometry in Taurus-Auriga (Kenyon+ 1995) ReadMe+ftp1995ApJS..101..117K Colors for main-sequence stars If from_mag isn't specified the program will cycle through provided magnitudes and choose one. Note that...

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def _build_date_header_string(self, date_value): """Gets the date_value (may be None, basestring, float or datetime.datetime instance) and returns a valid date string as per RFC 2822.""" if isinstance(date_value, datetime): date_value = time.mktime(date_value.timetuple()) if not isinstance(date_value, base...

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def generate_delete_view(self): """Generate class based view for DeleteView""" name = model_class_form(self.model + 'DeleteView') delete_args = dict( model=self.get_model_class, template_name=self.get_template('delete'), permissions=self.view_permission('dele...

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def _messageFromSender(self, sender, messageID): """ Locate a previously queued message by a given sender and messageID. """ return self.store.findUnique( _QueuedMessage, AND(_QueuedMessage.senderUsername == sender.localpart, _QueuedMessage.senderD...

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41.6

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def flush(name, table='filter', family='ipv4', **kwargs): ''' .. versionadded:: 2014.1.0 Flush current iptables state table The table that owns the chain that should be modified family Networking family, either ipv4 or ipv6 ''' ret = {'name': name, 'changes': {...

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def months_per_hour(self): """A list of tuples representing months per hour in this analysis period.""" month_hour = [] hour_range = xrange(self.st_hour, self.end_hour + 1) for month in self.months_int: month_hour.extend([(month, hr) for hr in hour_range]) return mont...

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def populateFromRow(self, featureSetRecord): """ Populates the instance variables of this FeatureSet from the specified DB row. """ self._dbFilePath = featureSetRecord.dataurl self.setAttributesJson(featureSetRecord.attributes) self.populateFromFile(self._dbFilePa...

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def to_timedelta(value, strict=True): """ converts duration string to timedelta strict=True (by default) raises StrictnessError if either hours, minutes or seconds in duration string exceed allowed values """ if isinstance(value, int): return timedelta(seconds=value) # assuming it's se...

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def toLily(self): ''' Method which converts the object instance, its attributes and children to a string of lilypond code :return: str of lilypond code ''' lilystring = "" if self.duration > 0: lilystring += "r" + str(self.duration) return lilystring

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31

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def fromkeys (cls, iterable, value=None): """Construct new caseless dict from given data.""" d = cls() for k in iterable: dict.__setitem__(d, k.lower(), value) return d

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34.5

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def _do_code_blocks(self, text): """Process Markdown `<pre><code>` blocks.""" code_block_re = re.compile(r''' (?:\n\n|\A\n?) ( # $1 = the code block -- one or more lines, starting with a space/tab (?: (?:[ ]{%d} | \t) # Lines must star...

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def get_undefined_namespace_names(graph: BELGraph, namespace: str) -> Set[str]: """Get the names from a namespace that wasn't actually defined. :return: The set of all names from the undefined namespace """ return { exc.name for _, exc, _ in graph.warnings if isinstance(exc, Und...

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def __looks_like_html(response): """Guesses entity type when Content-Type header is missing. Since Content-Type is not strictly required, some servers leave it out. """ text = response.text.lstrip().lower() return text.startswith('<html') or text.startswith('<!doctype')

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def request(self, method, apikey, *args, **kwargs): """ Make a xml-rpc call to remote API. """ dry_run = kwargs.get('dry_run', False) return_dry_run = kwargs.get('return_dry_run', False) if return_dry_run: args[-1]['--dry-run'] = True try: func = getattr(...

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def energy_prof(step): """Energy flux. This computation takes sphericity into account if necessary. Args: step (:class:`~stagpy.stagyydata._Step`): a step of a StagyyData instance. Returns: tuple of :class:`numpy.array`: the energy flux and the radial position at wh...

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def serialize(self): """ Converts the credentials to a percent encoded string to be stored for later use. :returns: :class:`string` """ if self.provider_id is None: raise ConfigError( 'To serialize credentials you need to specify...

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29.9

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def batch_flatten(x): """ Flatten the tensor except the first dimension. """ shape = x.get_shape().as_list()[1:] if None not in shape: return tf.reshape(x, [-1, int(np.prod(shape))]) return tf.reshape(x, tf.stack([tf.shape(x)[0], -1]))

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def is_thin_archieve(self): """ Return the is thin archieve attribute of the BFD file being processed. """ if not self._ptr: raise BfdException("BFD not initialized") return _bfd.get_bfd_attribute( self._ptr, BfdAttributes.IS_THIN_ARCHIEVE)

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33

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def power(self, n): """Return the compose of a QuantumChannel with itself n times. Args: n (int): compute the matrix power of the superoperator matrix. Returns: SuperOp: the n-times composition channel as a SuperOp object. Raises: QiskitError: if th...

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40.818182

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def _scheduled_check_for_summaries(self): """Present the results if they have become available or timed out.""" if self._analysis_process is None: return # handle time out timed_out = time.time() - self._analyze_start_time > self.time_limit if timed_out: s...

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def _template(node_id, value=None): "Check if a template is assigned to it and render that with the value" result = [] select_template_from_node = fetch_query_string('select_template_from_node.sql') try: result = db.execute(text(select_template_from_node), node_id=node_id) template_resul...

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40.1

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def validate_character_instance_valid_for_arc(sender, instance, action, reverse, pk_set, *args, **kwargs): ''' Evaluate attempts to assign a character instance to ensure it is from same outline. ''' if action == 'pre_add': if reverse: # Fetch arc definition through link. ...

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50.470588

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def delete(path, regex=None, recurse=False, test=False): """Deletes the file or directory at `path`. If `path` is a directory and `regex` is provided, matching files will be deleted; `recurse` controls whether subdirectories are recursed. A list of deleted items is returned. If `test` is true, nothing w...

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39.4

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def one_version(self, index=0): ''' Leaves only one version for each object. :param index: List-like index of the version. 0 == first; -1 == last ''' def prep(df): start = sorted(df._start.tolist())[index] return df[df._start == start] return pd...

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def get_exif_data(filename): """Return a dict with the raw EXIF data.""" logger = logging.getLogger(__name__) img = _read_image(filename) try: exif = img._getexif() or {} except ZeroDivisionError: logger.warning('Failed to read EXIF data.') return None data = {TAGS.ge...

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29.125

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def audio_detection_sensitivity(self): """Sensitivity level of Camera audio detection.""" if not self.triggers: return None for trigger in self.triggers: if trigger.get("type") != "audioAmplitude": continue sensitivity = trigger.get("sensitiv...

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29.357143

17.071429

async def _on_status_change(self, update): """Update a service that has its status updated.""" info = update['payload'] new_number = info['new_status'] name = update['service'] if name not in self.services: return with self._state_lock: is_chang...

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36.294118

20.117647

def generate_csv(path, out): """\ Walks through the `path` and generates the CSV file `out` """ def is_berlin_cable(filename): return 'BERLIN' in filename writer = UnicodeWriter(open(out, 'wb'), delimiter=';') writer.writerow(('Reference ID', 'Created', 'Origin', 'Subject')) for cabl...

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46.7

17.8

def concatenate(self, tpl, axis=None): """ Concatenates sparse tensors. Parameters ---------- tpl : tuple of sparse tensors Tensors to be concatenated. axis : int, optional Axis along which concatenation should take place """ if ...

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30.631579

14.842105

def read_reporting_revisions_get(self, project=None, fields=None, types=None, continuation_token=None, start_date_time=None, include_identity_ref=None, include_deleted=None, include_tag_ref=None, include_latest_only=None, expand=None, include_discussion_changes_only=None, max_page_size=None): """ReadReportingRe...

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84.666667

48.431373

def post_parse_response(self, response, **kwargs): """ Add scope claim to response, from the request, if not present in the response :param response: The response :param kwargs: Extra Keyword arguments :return: A possibly augmented response """ if "scope...

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32.083333

16

def _AsMessageList(msg): """Convert the provided list-as-JsonValue to a list.""" # This really needs to live in extra_types, but extra_types needs # to import this file to be able to register codecs. # TODO(craigcitro): Split out a codecs module and fix this ugly # import. from apitools.base.py ...

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38.217391

16.869565

def run(self): """ Returns the sum of unread messages across all registered backends """ unread = 0 current_unread = 0 for id, backend in enumerate(self.backends): temp = backend.unread or 0 unread = unread + temp if id == self.current_...

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29.545455

18.575758

def draw_rand_pos(self, radius, z_min, z_max, min_r=np.array([0]), min_cell_interdist=10., **args): """ Draw some random location within radius, z_min, z_max, and constrained by min_r and the minimum cell interdistance. Returned argument is a list of dicts [{'xpos',...

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36.472527

20.692308

def source(self, value): """ Setter for **self.__source** attribute. :param value: Attribute value. :type value: unicode """ if value is not None: assert type(value) is unicode, "'{0}' attribute: '{1}' type is not 'unicode'!".format( "source"...

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35.230769

21.230769

def make_internal_signing_service(config, entity_id): """ Given configuration initiate an InternalSigningService instance :param config: The signing service configuration :param entity_id: The entity identifier :return: A InternalSigningService instance """ _args = dict([(k, v) for k, v in...

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32.692308

17.615385

def dvds_top_rentals(self, **kwargs): """Gets the current opening movies from the API. Args: limit (optional): limits the number of movies returned, default=10 country (optional): localized data for selected country, default="us" Returns: A dict respresentation of...

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34.133333

20.466667

def synchronize(self, pid, vendorSpecific=None): """See Also: synchronizeResponse() Args: pid: vendorSpecific: Returns: """ response = self.synchronizeResponse(pid, vendorSpecific) return self._read_boolean_response(response)

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32.5

18.5

def get_edge_citation(self, u: BaseEntity, v: BaseEntity, key: str) -> Optional[CitationDict]: """Get the citation for a given edge.""" return self._get_edge_attr(u, v, key, CITATION)

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65.666667

23

def spher_harms(l, m, inclination): """Return spherical harmonic polarizations """ # FIXME: we are using spin -2 weighted spherical harmonics for now, # when possible switch to spheroidal harmonics. Y_lm = lal.SpinWeightedSphericalHarmonic(inclination, 0., -2, l, m).real Y_lminusm = lal.SpinWei...

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39.416667

18.333333

def delete_all(self, model_class): '''Drop all records from the table model_class.__name__.lower() ''' assert hasattr(model_class, '_fields'), 'Not a valid model class' table = model_class.__name__.lower() with Session() as conn: SQL = f'DELETE FROM {table}' ...

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36.7

16.9

def json_data(self, instance, default=None): """Get a JSON compatible value """ value = self.get(instance) return value or default

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31.6

3.8

def clear_rr_ce_entries(self): # type: () -> None ''' A method to clear out all of the extent locations of all Rock Ridge Continuation Entries that the PVD is tracking. This can be used to reset all data before assigning new data. Parameters: None. Retu...

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33.411765

24.470588

def _gen_3spec(op, path, xattr=False): """ Returns a Spec tuple suitable for passing to the underlying C extension. This variant is called for operations that lack an input value. :param str path: The path to fetch :param bool xattr: Whether this is an extended attribute :return: a spec suitabl...

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35

17.307692

def handle_request(self, request, **resources): """ Get a method for request and execute. :return object: method result """ if not request.method in self._meta.callmap.keys(): raise HttpError( 'Unknown or unsupported method \'%s\'' % request.method, ...

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34.625

19.375

def run_interactive(query, editor=None, just_count=False, default_no=False): """ Asks the user about each patch suggested by the result of the query. @param query An instance of the Query class. @param editor Name of editor to use for manual intervention, e.g. 'vim'...

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37.489796

18.591837

def execute_as(collector): """Execute a command (after the --) as an assumed role (specified by --artifact)""" # Gonna assume role anyway... collector.configuration['amazon']._validated = True # Find the arn we want to assume account_id = collector.configuration['accounts'][collector.configuration[...

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46.090909

25.772727

def main(argv=None): """Main entry point for the cdstar CLI.""" args = docopt(__doc__, version=pycdstar.__version__, argv=argv, options_first=True) subargs = [args['<command>']] + args['<args>'] if args['<command>'] in ['help', None]: cmd = None if len(subargs) > 1: cmd = CO...

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28.238095

16.238095

def image_member(self): """ Returns a json-schema document that represents an image member entity. (a container of member entities). """ uri = "/%s/member" % self.uri_base resp, resp_body = self.api.method_get(uri) return resp_body

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35

10.5

def add_code_challenge(request_args, service, **kwargs): """ PKCE RFC 7636 support To be added as a post_construct method to an :py:class:`oidcservice.oidc.service.Authorization` instance :param service: The service that uses this function :param request_args: Set of request arguments :para...

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33.5

18.547619