kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def participate(self): """Finish reading and send text""" try: while True: left = WebDriverWait(self.driver, 10).until( EC.element_to_be_clickable((By.ID, "left_button")) ) right = WebDriverWait(self.driver, 10).until( ...	[ "def", "participate", "(", "self", ")", ":", "try", ":", "while", "True", ":", "left", "=", "WebDriverWait", "(", "self", ".", "driver", ",", "10", ")", ".", "until", "(", "EC", ".", "element_to_be_clickable", "(", "(", "By", ".", "ID", ",", "\"left_...	35.6	19.733333
def esxcli(host, user, pwd, cmd, protocol=None, port=None, esxi_host=None, credstore=None): ''' Shell out and call the specified esxcli commmand, parse the result and return something sane. :param host: ESXi or vCenter host to connect to :param user: User to connect as, usually root :param pwd:...	[ "def", "esxcli", "(", "host", ",", "user", ",", "pwd", ",", "cmd", ",", "protocol", "=", "None", ",", "port", "=", "None", ",", "esxi_host", "=", "None", ",", "credstore", "=", "None", ")", ":", "esx_cmd", "=", "salt", ".", "utils", ".", "path", ...	42.618182	25.890909
def _file_path(self, uid): """Create and return full file path for DayOne entry""" file_name = '%s.doentry' % (uid) return os.path.join(self.dayone_journal_path, file_name)	[ "def", "_file_path", "(", "self", ",", "uid", ")", ":", "file_name", "=", "'%s.doentry'", "%", "(", "uid", ")", "return", "os", ".", "path", ".", "join", "(", "self", ".", "dayone_journal_path", ",", "file_name", ")" ]	48.25	9.5
def main(argv=None): """Entry point for Rewind. Parses input and calls run() for the real work. Parameters: argv -- sys.argv arguments. Can be set for testing purposes. returns -- the proposed exit code for the program. """ parser = argparse.ArgumentParser( description='Event ...	[ "def", "main", "(", "argv", "=", "None", ")", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", "description", "=", "'Event storage and event proxy.'", ",", "usage", "=", "'%(prog)s <configfile>'", ")", "parser", ".", "add_argument", "(", "'--exit-codewo...	30.965517	21.137931
def rc_channels_scaled_send(self, time_boot_ms, port, chan1_scaled, chan2_scaled, chan3_scaled, chan4_scaled, chan5_scaled, chan6_scaled, chan7_scaled, chan8_scaled, rssi, force_mavlink1=False): ''' The scaled values of the RC channels received. (-100%) -10000, (0%) 0, (1...	[ "def", "rc_channels_scaled_send", "(", "self", ",", "time_boot_ms", ",", "port", ",", "chan1_scaled", ",", "chan2_scaled", ",", "chan3_scaled", ",", "chan4_scaled", ",", "chan5_scaled", ",", "chan6_scaled", ",", "chan7_scaled", ",", "chan8_scaled", ",", "rssi", ",...	107.85	81.05
def is_group_name_exists(self, group_name): """ check if group with given name is already exists """ groups = self.m["groups"] for g in groups: if (g["group_name"] == group_name): return True return False	[ "def", "is_group_name_exists", "(", "self", ",", "group_name", ")", ":", "groups", "=", "self", ".", "m", "[", "\"groups\"", "]", "for", "g", "in", "groups", ":", "if", "(", "g", "[", "\"group_name\"", "]", "==", "group_name", ")", ":", "return", "True...	36.857143	9.428571
def sample_stats_prior_to_xarray(self): """Extract sample_stats from fit.""" dtypes = {"divergent__": bool, "n_leapfrog__": np.int64, "treedepth__": np.int64} # copy dims and coords dims = deepcopy(self.dims) if self.dims is not None else {} coords = deepcopy(self.coords) if sel...	[ "def", "sample_stats_prior_to_xarray", "(", "self", ")", ":", "dtypes", "=", "{", "\"divergent__\"", ":", "bool", ",", "\"n_leapfrog__\"", ":", "np", ".", "int64", ",", "\"treedepth__\"", ":", "np", ".", "int64", "}", "# copy dims and coords", "dims", "=", "de...	49.1	20
def move_partition(self, partition, broker_destination): """Move partition to destination broker and adjust replicas.""" self.remove_partition(partition) broker_destination.add_partition(partition)	[ "def", "move_partition", "(", "self", ",", "partition", ",", "broker_destination", ")", ":", "self", ".", "remove_partition", "(", "partition", ")", "broker_destination", ".", "add_partition", "(", "partition", ")" ]	54.5	6.75
def refine_pi_cation_laro(self, all_picat, stacks): """Just important for constellations with histidine involved. If the histidine ring is positioned in stacking position to an aromatic ring in the ligand, there is in most cases stacking and pi-cation interaction reported as histidine also carri...	[ "def", "refine_pi_cation_laro", "(", "self", ",", "all_picat", ",", "stacks", ")", ":", "i_set", "=", "[", "]", "for", "picat", "in", "all_picat", ":", "exclude", "=", "False", "for", "stack", "in", "stacks", ":", "if", "whichrestype", "(", "stack", ".",...	52.5	22.785714
def patch_python_logging_handlers(): ''' Patch the python logging handlers with out mixed-in classes ''' logging.StreamHandler = StreamHandler logging.FileHandler = FileHandler logging.handlers.SysLogHandler = SysLogHandler logging.handlers.WatchedFileHandler = WatchedFileHandler logging...	[ "def", "patch_python_logging_handlers", "(", ")", ":", "logging", ".", "StreamHandler", "=", "StreamHandler", "logging", ".", "FileHandler", "=", "FileHandler", "logging", ".", "handlers", ".", "SysLogHandler", "=", "SysLogHandler", "logging", ".", "handlers", ".", ...	40.818182	15.181818
def _find_node_by_indices(self, point): """"Find the GSNode that is refered to by the given indices. See GSNode::_indices() """ path_index, node_index = point path = self.paths[int(path_index)] node = path.nodes[int(node_index)] return node	[ "def", "_find_node_by_indices", "(", "self", ",", "point", ")", ":", "path_index", ",", "node_index", "=", "point", "path", "=", "self", ".", "paths", "[", "int", "(", "path_index", ")", "]", "node", "=", "path", ".", "nodes", "[", "int", "(", "node_in...	32.111111	8.666667
def scramble_string(self, length): """Return random string""" return fake.text(length) if length > 5 else ''.join([fake.random_letter() for n in range(0, length)])	[ "def", "scramble_string", "(", "self", ",", "length", ")", ":", "return", "fake", ".", "text", "(", "length", ")", "if", "length", ">", "5", "else", "''", ".", "join", "(", "[", "fake", ".", "random_letter", "(", ")", "for", "n", "in", "range", "("...	59	25
def add_header_callback(self, cb, port, channel, port_mask=0xFF, channel_mask=0xFF): """ Add a callback for a specific port/header callback with the possibility to add a mask for channel and port for multiple hits for same callback. """ self.cb...	[ "def", "add_header_callback", "(", "self", ",", "cb", ",", "port", ",", "channel", ",", "port_mask", "=", "0xFF", ",", "channel_mask", "=", "0xFF", ")", ":", "self", ".", "cb", ".", "append", "(", "_CallbackContainer", "(", "port", ",", "port_mask", ",",...	47.222222	15.666667
def eval(self, data, data_store, *, exclude=None): """ Return a new object in which callable parameters have been evaluated. Native types are not touched and simply returned, while callable methods are executed and their return value is returned. Args: data (MultiTaskData):...	[ "def", "eval", "(", "self", ",", "data", ",", "data_store", ",", "*", ",", "exclude", "=", "None", ")", ":", "exclude", "=", "[", "]", "if", "exclude", "is", "None", "else", "exclude", "result", "=", "{", "}", "for", "key", ",", "value", "in", "s...	41.419355	22.322581
def setup( hosts, default_keyspace, consistency=ConsistencyLevel.ONE, lazy_connect=False, retry_connect=False, **kwargs): """ Records the hosts and connects to one of them :param hosts: list of hosts, see http://datastax.github.io/python-driver/api/cassandra/...	[ "def", "setup", "(", "hosts", ",", "default_keyspace", ",", "consistency", "=", "ConsistencyLevel", ".", "ONE", ",", "lazy_connect", "=", "False", ",", "retry_connect", "=", "False", ",", "", "", "kwargs", ")", ":", "global", "cluster", ",", "session", "...	35.188679	18.54717
def sphergal_to_rectgal(l,b,d,vr,pmll,pmbb,degree=False): """ NAME: sphergal_to_rectgal PURPOSE: transform phase-space coordinates in spherical Galactic coordinates to rectangular Galactic coordinates (can take vector inputs) INPUT: l - Galactic longitude (rad) b - Gala...	[ "def", "sphergal_to_rectgal", "(", "l", ",", "b", ",", "d", ",", "vr", ",", "pmll", ",", "pmbb", ",", "degree", "=", "False", ")", ":", "XYZ", "=", "lbd_to_XYZ", "(", "l", ",", "b", ",", "d", ",", "degree", "=", "degree", ")", "vxvyvz", "=", "v...	23.909091	27.5
def generate_thumbnail(source, outname, box, delay, fit=True, options=None, converter='ffmpeg'): """Create a thumbnail image for the video source, based on ffmpeg.""" logger = logging.getLogger(__name__) tmpfile = outname + ".tmp.jpg" # dump an image of the video cmd = [conv...	[ "def", "generate_thumbnail", "(", "source", ",", "outname", ",", "box", ",", "delay", ",", "fit", "=", "True", ",", "options", "=", "None", ",", "converter", "=", "'ffmpeg'", ")", ":", "logger", "=", "logging", ".", "getLogger", "(", "__name__", ")", "...	40.705882	18.764706
def setColor(self, vehID, color): """setColor(string, (integer, integer, integer, integer)) sets color for vehicle with the given ID. i.e. (255,0,0,0) for the color red. The fourth integer (alpha) is only used when drawing vehicles with raster images """ self._connection....	[ "def", "setColor", "(", "self", ",", "vehID", ",", "color", ")", ":", "self", ".", "_connection", ".", "_beginMessage", "(", "tc", ".", "CMD_SET_VEHICLE_VARIABLE", ",", "tc", ".", "VAR_COLOR", ",", "vehID", ",", "1", "+", "1", "+", "1", "+", "1", "+"...	53.545455	15.909091
def register_backend(name, backend, allow_overwrite=False): """Register new backend. Args: name (str): The name of backend. gateclass (type): The type object of backend allow_overwrite (bool, optional): If True, allow to overwrite the existing backend. ...	[ "def", "register_backend", "(", "name", ",", "backend", ",", "allow_overwrite", "=", "False", ")", ":", "if", "hasattr", "(", "Circuit", ",", "\"run_with_\"", "+", "name", ")", ":", "if", "allow_overwrite", ":", "warnings", ".", "warn", "(", "f\"Circuit has ...	42.772727	21.636364
def let_variable(self, frame_id, var_name, expression_value): """ Let a frame's var with a value by building then eval a let expression with breakoints disabled. """ breakpoints_backup = IKBreakpoint.backup_breakpoints_state() IKBreakpoint.disable_all_breakpoints() let_...	[ "def", "let_variable", "(", "self", ",", "frame_id", ",", "var_name", ",", "expression_value", ")", ":", "breakpoints_backup", "=", "IKBreakpoint", ".", "backup_breakpoints_state", "(", ")", "IKBreakpoint", ".", "disable_all_breakpoints", "(", ")", "let_expression", ...	38.137931	15.931034
def fromhdf5sorted(source, where=None, name=None, sortby=None, checkCSI=False, start=None, stop=None, step=None): """ Provides access to an HDF5 table, sorted by an indexed column, e.g.:: >>> import petl as etl >>> import tables >>> # set up a new hdf5 table to demons...	[ "def", "fromhdf5sorted", "(", "source", ",", "where", "=", "None", ",", "name", "=", "None", ",", "sortby", "=", "None", ",", "checkCSI", "=", "False", ",", "start", "=", "None", ",", "stop", "=", "None", ",", "step", "=", "None", ")", ":", "assert...	37.980769	17.211538
def boolean_input(self, question, default=None): ''' Method for yes/no boolean inputs ''' result = input("%s: " % question) if not result and default is not None: return default while len(result) < 1 or result[0].lower() not in "yn": result...	[ "def", "boolean_input", "(", "self", ",", "question", ",", "default", "=", "None", ")", ":", "result", "=", "input", "(", "\"%s: \"", "%", "question", ")", "if", "not", "result", "and", "default", "is", "not", "None", ":", "return", "default", "while", ...	38.9	12.9
def nt_db_search(self, files, base, unpack, euk_check, search_method, maximum_range, threads, evalue): ''' Nucleotide database search pipeline - pipeline where reads are searched as nucleotides, and hits are identified using nhmmer searches Parameters ------...	[ "def", "nt_db_search", "(", "self", ",", "files", ",", "base", ",", "unpack", ",", "euk_check", ",", "search_method", ",", "maximum_range", ",", "threads", ",", "evalue", ")", ":", "# Define outputs", "hmmsearch_output_table", "=", "files", ".", "hmmsearch_outpu...	46	23.92
def create_from_textgrid(self,word_list): """ Fills the ParsedResponse object with a list of TextGrid.Word objects originally from a .TextGrid file. :param list word_list: List of TextGrid.Word objects corresponding to words/tokens in the subject response. Modifies: - self.timing_i...	[ "def", "create_from_textgrid", "(", "self", ",", "word_list", ")", ":", "self", ".", "timing_included", "=", "True", "for", "i", ",", "entry", "in", "enumerate", "(", "word_list", ")", ":", "self", ".", "unit_list", ".", "append", "(", "Unit", "(", "entr...	49.571429	24.380952
def iter_records_for(self, package_name): """ Iterate records for a specific package. """ entry_points = self.packages.get(package_name, NotImplemented) if entry_points is NotImplemented: logger.debug( "package '%s' has not declared any entry points f...	[ "def", "iter_records_for", "(", "self", ",", "package_name", ")", ":", "entry_points", "=", "self", ".", "packages", ".", "get", "(", "package_name", ",", "NotImplemented", ")", "if", "entry_points", "is", "NotImplemented", ":", "logger", ".", "debug", "(", ...	36.05	17.45
def start_external_instances(self, late_start=False): """Launch external instances that are load correctly :param late_start: If late_start, don't look for last_init_try :type late_start: bool :return: None """ for instance in [i for i in self.instances if i.is_external]...	[ "def", "start_external_instances", "(", "self", ",", "late_start", "=", "False", ")", ":", "for", "instance", "in", "[", "i", "for", "i", "in", "self", ".", "instances", "if", "i", ".", "is_external", "]", ":", "# But maybe the init failed a bit, so bypass this ...	44.5	21.333333
def set_log_level(self, level): """Set the logging level. Parameters ---------- level : logging level constant The value to set the logging level to. """ self._log_level = level if self._python_logger: try: level = self.PY...	[ "def", "set_log_level", "(", "self", ",", "level", ")", ":", "self", ".", "_log_level", "=", "level", "if", "self", ".", "_python_logger", ":", "try", ":", "level", "=", "self", ".", "PYTHON_LEVEL", ".", "get", "(", "level", ")", "except", "ValueError", ...	30.25	15
def post_helper(form_tag=True, edit_mode=False): """ Post's form layout helper """ helper = FormHelper() helper.form_action = '.' helper.attrs = {'data_abide': ''} helper.form_tag = form_tag fieldsets = [ Row( Column( 'text', css_c...	[ "def", "post_helper", "(", "form_tag", "=", "True", ",", "edit_mode", "=", "False", ")", ":", "helper", "=", "FormHelper", "(", ")", "helper", ".", "form_action", "=", "'.'", "helper", ".", "attrs", "=", "{", "'data_abide'", ":", "''", "}", "helper", "...	20.794872	18.230769
def get_mysql_connection(host, user, port, password, database, ssl={}): """ MySQL connection """ return pymysql.connect(host=host, user=user, port=port, password=password, db=database, ...	[ "def", "get_mysql_connection", "(", "host", ",", "user", ",", "port", ",", "password", ",", "database", ",", "ssl", "=", "{", "}", ")", ":", "return", "pymysql", ".", "connect", "(", "host", "=", "host", ",", "user", "=", "user", ",", "port", "=", ...	42.153846	13.538462
def execute(self, command, blocking=True, exec_create_kwargs=None, exec_start_kwargs=None): """ Execute a command in this container -- the container needs to be running. If the command fails, a ConuException is thrown. This is a blocking call by default and writes output of the command...	[ "def", "execute", "(", "self", ",", "command", ",", "blocking", "=", "True", ",", "exec_create_kwargs", "=", "None", ",", "exec_start_kwargs", "=", "None", ")", ":", "logger", ".", "info", "(", "\"running command %s\"", ",", "command", ")", "exec_create_kwargs...	44.979167	25.604167
def _parse_vertex_tuple(s): """Parse vertex indices in '/' separated form (like 'i/j/k', 'i//k' ...).""" vt = [0, 0, 0] for i, c in enumerate(s.split('/')): if c: vt[i] = int(c) return tuple(vt)	[ "def", "_parse_vertex_tuple", "(", "s", ")", ":", "vt", "=", "[", "0", ",", "0", ",", "0", "]", "for", "i", ",", "c", "in", "enumerate", "(", "s", ".", "split", "(", "'/'", ")", ")", ":", "if", "c", ":", "vt", "[", "i", "]", "=", "int", "...	29.428571	16
def clear_request(name=None): ''' .. versionadded:: 2017.7.3 Clear out the state execution request without executing it CLI Example: .. code-block:: bash salt '*' state.clear_request ''' notify_path = os.path.join(__opts__['cachedir'], 'req_state.p') serial = salt.payload.Ser...	[ "def", "clear_request", "(", "name", "=", "None", ")", ":", "notify_path", "=", "os", ".", "path", ".", "join", "(", "__opts__", "[", "'cachedir'", "]", ",", "'req_state.p'", ")", "serial", "=", "salt", ".", "payload", ".", "Serial", "(", "__opts__", "...	29.55	20.3
def scramble(expnums, ccd, version='p', dry_run=False): """run the plant script on this combination of exposures""" mjds = [] fobjs = [] for expnum in expnums: filename = storage.get_image(expnum, ccd=ccd, version=version) fobjs.append(fits.open(filename)) # Pull out values to r...	[ "def", "scramble", "(", "expnums", ",", "ccd", ",", "version", "=", "'p'", ",", "dry_run", "=", "False", ")", ":", "mjds", "=", "[", "]", "fobjs", "=", "[", "]", "for", "expnum", "in", "expnums", ":", "filename", "=", "storage", ".", "get_image", "...	36.677419	16.516129
def peek_string(self, lpBaseAddress, fUnicode = False, dwMaxSize = 0x1000): """ Tries to read an ASCII or Unicode string from the address space of the process. @see: L{read_string} @type lpBaseAddress: int @param lpBaseAddress: Memory address to begin reading. ...	[ "def", "peek_string", "(", "self", ",", "lpBaseAddress", ",", "fUnicode", "=", "False", ",", "dwMaxSize", "=", "0x1000", ")", ":", "# Validate the parameters.", "if", "not", "lpBaseAddress", "or", "dwMaxSize", "==", "0", ":", "if", "fUnicode", ":", "return", ...	32.894737	20.789474
def _set_zoning(self, v, load=False): """ Setter method for zoning, mapped from YANG variable /zoning (container) If this variable is read-only (config: false) in the source YANG file, then _set_zoning is considered as a private method. Backends looking to populate this variable should do so via...	[ "def", "_set_zoning", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ",", "base", ...	74.909091	34.409091
def plantloopfieldlists(data): """return the plantloopfield list""" objkey = 'plantloop'.upper() numobjects = len(data.dt[objkey]) return [[ 'Name', 'Plant Side Inlet Node Name', 'Plant Side Outlet Node Name', 'Plant Side Branch List Name', 'Demand Side Inlet Node...	[ "def", "plantloopfieldlists", "(", "data", ")", ":", "objkey", "=", "'plantloop'", ".", "upper", "(", ")", "numobjects", "=", "len", "(", "data", ".", "dt", "[", "objkey", "]", ")", "return", "[", "[", "'Name'", ",", "'Plant Side Inlet Node Name'", ",", ...	34.166667	8
def _extend_spikes(spike_ids, spike_clusters): """Return all spikes belonging to the clusters containing the specified spikes.""" # We find the spikes belonging to modified clusters. # What are the old clusters that are modified by the assignment? old_spike_clusters = spike_clusters[spike_ids] u...	[ "def", "_extend_spikes", "(", "spike_ids", ",", "spike_clusters", ")", ":", "# We find the spikes belonging to modified clusters.", "# What are the old clusters that are modified by the assignment?", "old_spike_clusters", "=", "spike_clusters", "[", "spike_ids", "]", "unique_clusters...	53.384615	14.384615
def find_profile(self, bitarray, eep_rorg, rorg_func, rorg_type, direction=None, command=None): ''' Find profile and data description, matching RORG, FUNC and TYPE ''' if not self.init_ok: self.logger.warn('EEP.xml not loaded!') return None if eep_rorg not in self.telegr...	[ "def", "find_profile", "(", "self", ",", "bitarray", ",", "eep_rorg", ",", "rorg_func", ",", "rorg_type", ",", "direction", "=", "None", ",", "command", "=", "None", ")", ":", "if", "not", "self", ".", "init_ok", ":", "self", ".", "logger", ".", "warn"...	42.972222	25.638889
def assert_instance_deleted(self, model_class, **kwargs): """ Checks if the model instance was deleted from the database. For example:: >>> with self.assert_instance_deleted(Article, slug='lorem-ipsum'): ... Article.objects.get(slug='lorem-ipsum').delete() """ ...	[ "def", "assert_instance_deleted", "(", "self", ",", "model_class", ",", "", "", "kwargs", ")", ":", "return", "_InstanceContext", "(", "self", ".", "assert_instance_exists", ",", "self", ".", "assert_instance_does_not_exist", ",", "model_class", ",", "", "", ...	31.933333	19
def destroy(self, force=False): """UnmanagedLXC Destructor. It requires force to be true in order to work. Otherwise it throws an error. """ if force: super(UnmanagedLXC, self).destroy() else: raise UnmanagedLXCError('Destroying an unmanaged LXC m...	[ "def", "destroy", "(", "self", ",", "force", "=", "False", ")", ":", "if", "force", ":", "super", "(", "UnmanagedLXC", ",", "self", ")", ".", "destroy", "(", ")", "else", ":", "raise", "UnmanagedLXCError", "(", "'Destroying an unmanaged LXC might not '", "'w...	36.090909	21.909091
def pad(data_to_pad, block_size, style='pkcs7'): """Apply standard padding. :Parameters: data_to_pad : byte string The data that needs to be padded. block_size : integer The block boundary to use for padding. The output length is guaranteed to be a multiple of ``block_size``...	[ "def", "pad", "(", "data_to_pad", ",", "block_size", ",", "style", "=", "'pkcs7'", ")", ":", "padding_len", "=", "block_size", "-", "len", "(", "data_to_pad", ")", "%", "block_size", "if", "style", "==", "'pkcs7'", ":", "padding", "=", "bchr", "(", "padd...	35.52	17.8
def _getApplication(self): """Get the base application UIElement. If the UIElement is a child of the application, it will try to get the AXParent until it reaches the top application level element. """ app = self while True: try: app =...	[ "def", "_getApplication", "(", "self", ")", ":", "app", "=", "self", "while", "True", ":", "try", ":", "app", "=", "app", ".", "AXParent", "except", "_a11y", ".", "ErrorUnsupported", ":", "break", "return", "app" ]	28.857143	17.928571
def list_pools(self, retrieve_all=True, _params): """Fetches a list of all load balancer pools for a project.""" # Pass filters in "params" argument to do_request return self.list('pools', self.pools_path, retrieve_all, _params)	[ "def", "list_pools", "(", "self", ",", "retrieve_all", "=", "True", ",", "", "", "_params", ")", ":", "# Pass filters in \"params\" argument to do_request", "return", "self", ".", "list", "(", "'pools'", ",", "self", ".", "pools_path", ",", "retrieve_all", ","...	55.4	11.4
def read_label_list(path): """ Reads labels from an Audacity label file and returns them wrapped in a :py:class:`audiomate.annotations.LabelList`. Args: path (str): Path to the Audacity label file Returns: audiomate.annotations.LabelList: Label list containing the labels """ ...	[ "def", "read_label_list", "(", "path", ")", ":", "ll", "=", "annotations", ".", "LabelList", "(", ")", "for", "record", "in", "read_label_file", "(", "path", ")", ":", "ll", ".", "add", "(", "annotations", ".", "Label", "(", "record", "[", "2", "]", ...	27.529412	22.941176
def get_contig_names(fasta_file): """ Gets contig names from a fasta file using SeqIO. :param fasta_file: Full path to uncompressed, fasta-formatted file :return: List of contig names. """ contig_names = list() for contig in SeqIO.parse(fasta_file, 'fasta'): contig_names.append(conti...	[ "def", "get_contig_names", "(", "fasta_file", ")", ":", "contig_names", "=", "list", "(", ")", "for", "contig", "in", "SeqIO", ".", "parse", "(", "fasta_file", ",", "'fasta'", ")", ":", "contig_names", ".", "append", "(", "contig", ".", "id", ")", "retur...	34	10
def list_drama_series(self, sort=META.SORT_ALPHA, limit=META.MAX_SERIES, offset=0): """Get a list of drama series @param str sort pick how results should be sorted, should be one of META.SORT_* @param int limit limit number of series to return, there doesn...	[ "def", "list_drama_series", "(", "self", ",", "sort", "=", "META", ".", "SORT_ALPHA", ",", "limit", "=", "META", ".", "MAX_SERIES", ",", "offset", "=", "0", ")", ":", "result", "=", "self", ".", "_android_api", ".", "list_series", "(", "media_type", "=",...	43.9375	19.0625
def user_has_super_roles(): """Return whether the current belongs to superuser roles """ member = api.get_current_user() super_roles = ["LabManager", "Manager"] diff = filter(lambda role: role in super_roles, member.getRoles()) return len(diff) > 0	[ "def", "user_has_super_roles", "(", ")", ":", "member", "=", "api", ".", "get_current_user", "(", ")", "super_roles", "=", "[", "\"LabManager\"", ",", "\"Manager\"", "]", "diff", "=", "filter", "(", "lambda", "role", ":", "role", "in", "super_roles", ",", ...	38	9.571429
def dispatch_line(self, frame): """Handle line action and return the next line callback.""" callback = TerminalPdb.dispatch_line(self, frame) # If the ipdb session ended, don't return a callback for the next line if self.stoplineno == -1: return None return callback	[ "def", "dispatch_line", "(", "self", ",", "frame", ")", ":", "callback", "=", "TerminalPdb", ".", "dispatch_line", "(", "self", ",", "frame", ")", "# If the ipdb session ended, don't return a callback for the next line", "if", "self", ".", "stoplineno", "==", "-", "...	34.666667	20.555556
def ensure_valid_environment_config(module_name, config): """Exit if config is invalid.""" if not config.get('namespace'): LOGGER.fatal("staticsite: module %s's environment configuration is " "missing a namespace definition!", module_name) sys.exit(1)	[ "def", "ensure_valid_environment_config", "(", "module_name", ",", "config", ")", ":", "if", "not", "config", ".", "get", "(", "'namespace'", ")", ":", "LOGGER", ".", "fatal", "(", "\"staticsite: module %s's environment configuration is \"", "\"missing a namespace definit...	44.428571	14.428571
def add_data_point(self, x, y): """Adds a data point to the series. :param x: The numerical x value to be added. :param y: The numerical y value to be added.""" if not is_numeric(x): raise TypeError("x value must be numeric, not '%s'" % str(x)) if not is_numeric(y):...	[ "def", "add_data_point", "(", "self", ",", "x", ",", "y", ")", ":", "if", "not", "is_numeric", "(", "x", ")", ":", "raise", "TypeError", "(", "\"x value must be numeric, not '%s'\"", "%", "str", "(", "x", ")", ")", "if", "not", "is_numeric", "(", "y", ...	39.5	16.5
def parse_uploaded_image(field): '''Parse an uploaded image and save into a db.ImageField()''' args = image_parser.parse_args() image = args['file'] if image.mimetype not in IMAGES_MIMETYPES: api.abort(400, 'Unsupported image format') bbox = args.get('bbox', None) if bbox: bbox ...	[ "def", "parse_uploaded_image", "(", "field", ")", ":", "args", "=", "image_parser", ".", "parse_args", "(", ")", "image", "=", "args", "[", "'file'", "]", "if", "image", ".", "mimetype", "not", "in", "IMAGES_MIMETYPES", ":", "api", ".", "abort", "(", "40...	35	15.181818
def write_property(fh, key, value): """ Write a single property to the file in Java properties format. :param fh: a writable file-like object :param key: the key to write :param value: the value to write """ if key is COMMENT: write_comment(fh, value) return _require_string(key, 'keys'...	[ "def", "write_property", "(", "fh", ",", "key", ",", "value", ")", ":", "if", "key", "is", "COMMENT", ":", "write_comment", "(", "fh", ",", "value", ")", "return", "_require_string", "(", "key", ",", "'keys'", ")", "_require_string", "(", "value", ",", ...	22.947368	16.315789
def determine_device(kal_out): """Extract and return device from scan results.""" device = "" while device == "": for line in kal_out.splitlines(): if "Using device " in line: device = str(line.split(' ', 2)[-1]) if device == "": device = None retu...	[ "def", "determine_device", "(", "kal_out", ")", ":", "device", "=", "\"\"", "while", "device", "==", "\"\"", ":", "for", "line", "in", "kal_out", ".", "splitlines", "(", ")", ":", "if", "\"Using device \"", "in", "line", ":", "device", "=", "str", "(", ...	32	12
def repair(source, validate_archive=False): """Use auditwheel (https://github.com/pypa/auditwheel) to attempt and repair all wheels in a wagon. The repair process will: 1. Extract the wagon and its metadata 2. Repair all wheels 3. Update the metadata with the new wheel names and platform 4...	[ "def", "repair", "(", "source", ",", "validate_archive", "=", "False", ")", ":", "_assert_auditwheel_exists", "(", ")", "logger", ".", "info", "(", "'Repairing: %s'", ",", "source", ")", "processed_source", "=", "get_source", "(", "source", ")", "metadata", "=...	33.380952	13.452381
def getSpktSpkid(cellGids=[], timeRange=None, allCells=False): '''return spike ids and times; with allCells=True just need to identify slice of time so can omit cellGids''' from .. import sim import pandas as pd try: # Pandas 0.24 and later from pandas import _lib as pandaslib except: #...	[ "def", "getSpktSpkid", "(", "cellGids", "=", "[", "]", ",", "timeRange", "=", "None", ",", "allCells", "=", "False", ")", ":", "from", ".", ".", "import", "sim", "import", "pandas", "as", "pd", "try", ":", "# Pandas 0.24 and later", "from", "pandas", "im...	54.095238	32.952381
def old(self): """ The old value from the event. """ ori = self.original.action if isinstance(ori, ( types.ChannelAdminLogEventActionChangeAbout, types.ChannelAdminLogEventActionChangeTitle, types.ChannelAdminLogEventActionChangeUse...	[ "def", "old", "(", "self", ")", ":", "ori", "=", "self", ".", "original", ".", "action", "if", "isinstance", "(", "ori", ",", "(", "types", ".", "ChannelAdminLogEventActionChangeAbout", ",", "types", ".", "ChannelAdminLogEventActionChangeTitle", ",", "types", ...	44.25	17.9375
def get_views(self, app_id, include_standard_views=False): """ Get all of the views for the specified app :param app_id: the app containing the views :param include_standard_views: defaults to false. Set to true if you wish to include standard views. """ include_standard...	[ "def", "get_views", "(", "self", ",", "app_id", ",", "include_standard_views", "=", "False", ")", ":", "include_standard", "=", "\"true\"", "if", "include_standard_views", "is", "True", "else", "\"false\"", "return", "self", ".", "transport", ".", "GET", "(", ...	53.555556	28.888889
def fw_int_to_hex(args): """Pack integers into hex string. Use little-endian and unsigned int format. """ return binascii.hexlify( struct.pack('<{}H'.format(len(args)), args)).decode('utf-8')	[ "def", "fw_int_to_hex", "(", "", "args", ")", ":", "return", "binascii", ".", "hexlify", "(", "struct", ".", "pack", "(", "'<{}H'", ".", "format", "(", "len", "(", "args", ")", ")", ",", "", "args", ")", ")", ".", "decode", "(", "'utf-8'", ")" ]	30.285714	14.571429
def prt_goids(self, goids=None, prtfmt=None, sortby=True, prt=sys.stdout): """Given GO IDs, print decriptive info about each GO Term.""" if goids is None: goids = self.go_sources nts = self.get_nts(goids, sortby) if prtfmt is None: prtfmt = self.prt_attr['fmta'] ...	[ "def", "prt_goids", "(", "self", ",", "goids", "=", "None", ",", "prtfmt", "=", "None", ",", "sortby", "=", "True", ",", "prt", "=", "sys", ".", "stdout", ")", ":", "if", "goids", "is", "None", ":", "goids", "=", "self", ".", "go_sources", "nts", ...	41.545455	12.727273
def get_stream(self, channel): """Return the stream of the given channel :param channel: the channel that is broadcasting. Either name or models.Channel instance :type channel: :class:`str` \| :class:`models.Channel` :returns: the stream or None, if the channel is...	[ "def", "get_stream", "(", "self", ",", "channel", ")", ":", "if", "isinstance", "(", "channel", ",", "models", ".", "Channel", ")", ":", "channel", "=", "channel", ".", "name", "r", "=", "self", ".", "kraken_request", "(", "'GET'", ",", "'streams/'", "...	39.133333	15.8
def generate_single_kcorrection_listing( log, pathToOutputDirectory, pathToSpectralDatabase, model, restFrameFilter, redshift, temporalResolution=4.0): """ Given a redshift generate a dictionary of k-correction polynomials for the MCS. **Key Argumen...	[ "def", "generate_single_kcorrection_listing", "(", "log", ",", "pathToOutputDirectory", ",", "pathToSpectralDatabase", ",", "model", ",", "restFrameFilter", ",", "redshift", ",", "temporalResolution", "=", "4.0", ")", ":", "################ > IMPORTS ################", "## ...	42.463054	22.817734
def _upload_part(api, session, url, upload, part_number, part, retry_count, timeout): """ Used by the worker to upload a part to the storage service. :param api: Api instance. :param session: Storage service session. :param url: Part url. :param upload: Upload identifier. :p...	[ "def", "_upload_part", "(", "api", ",", "session", ",", "url", ",", "upload", ",", "part_number", ",", "part", ",", "retry_count", ",", "timeout", ")", ":", "part_url", "=", "retry", "(", "retry_count", ")", "(", "_get_part_url", ")", "(", "api", ",", ...	33.090909	15.454545
def main(): """Function to remove temperature effect from field data """ options = handle_options() # read in observed and synthetic data elecs, d_obs = readin_volt(options.d_obs) elecs, d_est = readin_volt(options.d_est) elecs, d_estTC = readin_volt(options.d_estTC) # calculate correct...	[ "def", "main", "(", ")", ":", "options", "=", "handle_options", "(", ")", "# read in observed and synthetic data", "elecs", ",", "d_obs", "=", "readin_volt", "(", "options", ".", "d_obs", ")", "elecs", ",", "d_est", "=", "readin_volt", "(", "options", ".", "...	30	11.421053
def revoke_group_permission( self, group_name, source_group_name, source_group_owner_id): """ This is a convenience function that wraps the "authorize group" functionality of the C{authorize_security_group} method. For an explanation of the parameters, see C{revoke_security_grou...	[ "def", "revoke_group_permission", "(", "self", ",", "group_name", ",", "source_group_name", ",", "source_group_owner_id", ")", ":", "d", "=", "self", ".", "revoke_security_group", "(", "group_name", ",", "source_group_name", "=", "source_group_name", ",", "source_grou...	39.230769	18.153846
def sha1(self): """ :return: The SHA1 hash of the DER-encoded bytes of this public key info """ if self._sha1 is None: self._sha1 = hashlib.sha1(byte_cls(self['public_key'])).digest() return self._sha1	[ "def", "sha1", "(", "self", ")", ":", "if", "self", ".", "_sha1", "is", "None", ":", "self", ".", "_sha1", "=", "hashlib", ".", "sha1", "(", "byte_cls", "(", "self", "[", "'public_key'", "]", ")", ")", ".", "digest", "(", ")", "return", "self", "...	28.666667	20.444444
def use_plenary_sequence_rule_enabler_rule_view(self): """Pass through to provider SequenceRuleEnablerRuleLookupSession.use_plenary_sequence_rule_enabler_rule_view""" self._object_views['sequence_rule_enabler_rule'] = PLENARY # self._get_provider_session('sequence_rule_enabler_rule_lookup_sessio...	[ "def", "use_plenary_sequence_rule_enabler_rule_view", "(", "self", ")", ":", "self", ".", "_object_views", "[", "'sequence_rule_enabler_rule'", "]", "=", "PLENARY", "# self._get_provider_session('sequence_rule_enabler_rule_lookup_session') # To make sure the session is tracked", "for",...	61.111111	23.444444
def _check_array_parms(is_array, array_size, value, element_kind, element_name): # pylint: disable=unused-argument # The array_size argument is unused. """ Check whether array-related parameters are ok. """ # The following case has been disabled because it cannot happen g...	[ "def", "_check_array_parms", "(", "is_array", ",", "array_size", ",", "value", ",", "element_kind", ",", "element_name", ")", ":", "# pylint: disable=unused-argument", "# The array_size argument is unused.", "# The following case has been disabled because it cannot happen given", "...	43.428571	15.642857
def create(handler, item_document): """Create a new item from a JSON document""" data = {'operation': 'create', 'item': json.load(item_document)} handler.invoke(data)	[ "def", "create", "(", "handler", ",", "item_document", ")", ":", "data", "=", "{", "'operation'", ":", "'create'", ",", "'item'", ":", "json", ".", "load", "(", "item_document", ")", "}", "handler", ".", "invoke", "(", "data", ")" ]	37.2	6.4
def Operation(self, x, y): """Whether x is fully contained in y.""" if x in y: return True # x might be an iterable # first we need to skip strings or we'll do silly things # pylint: disable=consider-merging-isinstance if isinstance(x, py2to3.STRING_TYPES) or isinstance(x, bytes): r...	[ "def", "Operation", "(", "self", ",", "x", ",", "y", ")", ":", "if", "x", "in", "y", ":", "return", "True", "# x might be an iterable", "# first we need to skip strings or we'll do silly things", "# pylint: disable=consider-merging-isinstance", "if", "isinstance", "(", ...	25.277778	21.055556
def from_xdr(cls, xdr): """Create an :class:`Asset` object from its base64 encoded XDR representation. :param bytes xdr: The base64 encoded XDR Asset object. :return: A new :class:`Asset` object from its encoded XDR representation. """ xdr_decoded = base64....	[ "def", "from_xdr", "(", "cls", ",", "xdr", ")", ":", "xdr_decoded", "=", "base64", ".", "b64decode", "(", "xdr", ")", "asset", "=", "Xdr", ".", "StellarXDRUnpacker", "(", "xdr_decoded", ")", "asset_xdr_object", "=", "asset", ".", "unpack_Asset", "(", ")", ...	33.133333	18
def dice_hard_coe(output, target, threshold=0.5, axis=(1, 2, 3), smooth=1e-5): """Non-differentiable Sørensen–Dice coefficient for comparing the similarity of two batch of data, usually be used for binary image segmentation i.e. labels are binary. The coefficient between 0 to 1, 1 if totally match. Par...	[ "def", "dice_hard_coe", "(", "output", ",", "target", ",", "threshold", "=", "0.5", ",", "axis", "=", "(", "1", ",", "2", ",", "3", ")", ",", "smooth", "=", "1e-5", ")", ":", "output", "=", "tf", ".", "cast", "(", "output", ">", "threshold", ",",...	38.756757	22.027027
def _parse_endofnames(client, command, actor, args): """Parse an ENDOFNAMES and dispatch a NAMES event for the channel.""" args = args.split(" :", 1)[0] # Strip off human-readable message _, _, channel = args.rpartition(' ') channel = client.server.get_channel(channel) or channel.lower() client.disp...	[ "def", "_parse_endofnames", "(", "client", ",", "command", ",", "actor", ",", "args", ")", ":", "args", "=", "args", ".", "split", "(", "\" :\"", ",", "1", ")", "[", "0", "]", "# Strip off human-readable message", "_", ",", "_", ",", "channel", "=", "a...	57.5	12
def GetReportDownloadHeaders(self, kwargs): """Returns a dictionary of headers for a report download request. Note that the given keyword arguments will override any settings configured from the googleads.yaml file. Args: kwargs: Optional keyword arguments. Keyword Arguments: clie...	[ "def", "GetReportDownloadHeaders", "(", "self", ",", "", "", "kwargs", ")", ":", "headers", "=", "self", ".", "_adwords_client", ".", "oauth2_client", ".", "CreateHttpHeader", "(", ")", "headers", ".", "update", "(", "{", "'Content-type'", ":", "self", "."...	41.948276	24.155172
def get_current_word_and_position(self, completion=False): """Return current word, i.e. word at cursor position, and the start position""" cursor = self.textCursor() if cursor.hasSelection(): # Removes the selection and moves the cursor to the left side ...	[ "def", "get_current_word_and_position", "(", "self", ",", "completion", "=", "False", ")", ":", "cursor", "=", "self", ".", "textCursor", "(", ")", "if", "cursor", ".", "hasSelection", "(", ")", ":", "# Removes the selection and moves the cursor to the left side\r", ...	52.304348	20.869565
def get_access_token(self, code, state=None): ''' In callback url: http://host/callback?code=123&state=xyz use code and state to get an access token. ''' kw = dict(client_id=self._client_id, client_secret=self._client_secret, code=code) if self._redirect_uri: ...	[ "def", "get_access_token", "(", "self", ",", "code", ",", "state", "=", "None", ")", ":", "kw", "=", "dict", "(", "client_id", "=", "self", ".", "_client_id", ",", "client_secret", "=", "self", ".", "_client_secret", ",", "code", "=", "code", ")", "if"...	42.130435	18.826087
def check_signature(signature, key, data): """Compute the HMAC signature and test against a given hash.""" if isinstance(key, type(u'')): key = key.encode() digest = 'sha1=' + hmac.new(key, data, hashlib.sha1).hexdigest() # Covert everything to byte sequences if isinstance(digest, type(u''...	[ "def", "check_signature", "(", "signature", ",", "key", ",", "data", ")", ":", "if", "isinstance", "(", "key", ",", "type", "(", "u''", ")", ")", ":", "key", "=", "key", ".", "encode", "(", ")", "digest", "=", "'sha1='", "+", "hmac", ".", "new", ...	34.642857	14.571429
def findparent(self, inputtemplates): """Find the most suitable parent, that is: the first matching unique/multi inputtemplate""" for inputtemplate in inputtemplates: if self.unique == inputtemplate.unique: return inputtemplate.id return None	[ "def", "findparent", "(", "self", ",", "inputtemplates", ")", ":", "for", "inputtemplate", "in", "inputtemplates", ":", "if", "self", ".", "unique", "==", "inputtemplate", ".", "unique", ":", "return", "inputtemplate", ".", "id", "return", "None" ]	48.166667	6.666667
def write_pkg_file(self, file): """Write the PKG-INFO format data to a file object. """ version = self.get_metadata_version() if six.PY2: def write_field(key, value): file.write("%s: %s\n" % (key, self._encode_field(value))) else: def write_field(key, value): ...	[ "def", "write_pkg_file", "(", "self", ",", "file", ")", ":", "version", "=", "self", ".", "get_metadata_version", "(", ")", "if", "six", ".", "PY2", ":", "def", "write_field", "(", "key", ",", "value", ")", ":", "file", ".", "write", "(", "\"%s: %s\\n\...	32.72973	16.567568
def dry_lapse(pressure, temperature, ref_pressure=None): r"""Calculate the temperature at a level assuming only dry processes. This function lifts a parcel starting at `temperature`, conserving potential temperature. The starting pressure can be given by `ref_pressure`. Parameters ---------- p...	[ "def", "dry_lapse", "(", "pressure", ",", "temperature", ",", "ref_pressure", "=", "None", ")", ":", "if", "ref_pressure", "is", "None", ":", "ref_pressure", "=", "pressure", "[", "0", "]", "return", "temperature", "*", "(", "pressure", "/", "ref_pressure", ...	32.96875	22.65625
def require_auth(request: Request, exceptions: bool=True) -> User: """ Returns authenticated User. :param request: HttpRequest :param exceptions: Raise (NotAuthenticated) exception. Default is True. :return: User """ if not request.user or not request.user.is_authenticated: if except...	[ "def", "require_auth", "(", "request", ":", "Request", ",", "exceptions", ":", "bool", "=", "True", ")", "->", "User", ":", "if", "not", "request", ".", "user", "or", "not", "request", ".", "user", ".", "is_authenticated", ":", "if", "exceptions", ":", ...	32.916667	15.25
def write_output(output_report, sample_name, multi_positions, genus, percent_contam, contam_stddev, total_gene_length, database_download_date, snp_cutoff=3, cgmlst=None): """ Function that writes the output generated by ConFindr to a report file. Appends to a file that already exists, or cr...	[ "def", "write_output", "(", "output_report", ",", "sample_name", ",", "multi_positions", ",", "genus", ",", "percent_contam", ",", "contam_stddev", ",", "total_gene_length", ",", "database_download_date", ",", "snp_cutoff", "=", "3", ",", "cgmlst", "=", "None", ")...	70.583333	37.75
def _at_function(self, calculator, rule, scope, block): """ Implements @mixin and @function """ if not block.argument: raise SyntaxError("%s requires a function name (%s)" % (block.directive, rule.file_and_line)) funct, argspec_node = self._get_funct_def(rule, calcul...	[ "def", "_at_function", "(", "self", ",", "calculator", ",", "rule", ",", "scope", ",", "block", ")", ":", "if", "not", "block", ".", "argument", ":", "raise", "SyntaxError", "(", "\"%s requires a function name (%s)\"", "%", "(", "block", ".", "directive", ",...	41.188235	17.023529
def _ls_sites(path): """ List only sites in the domain_sites() to ensure we co-exist with other projects """ with cd(path): sites = run('ls').split('\n') doms = [d.name for d in domain_sites()] dom_sites = [] for s in sites: ds = s.split('-')[0] d...	[ "def", "_ls_sites", "(", "path", ")", ":", "with", "cd", "(", "path", ")", ":", "sites", "=", "run", "(", "'ls'", ")", ".", "split", "(", "'\\n'", ")", "doms", "=", "[", "d", ".", "name", "for", "d", "in", "domain_sites", "(", ")", "]", "dom_si...	31.214286	12.642857
def CreateSession( cls, artifact_filter_names=None, command_line_arguments=None, debug_mode=False, filter_file_path=None, preferred_encoding='utf-8', preferred_time_zone=None, preferred_year=None): """Creates a session attribute container. Args: artifact_filter_names (Optional[list[str]...	[ "def", "CreateSession", "(", "cls", ",", "artifact_filter_names", "=", "None", ",", "command_line_arguments", "=", "None", ",", "debug_mode", "=", "False", ",", "filter_file_path", "=", "None", ",", "preferred_encoding", "=", "'utf-8'", ",", "preferred_time_zone", ...	40.935484	20.935484
def add_mapping(self, data, name=None): """ Add a new mapping """ from .mappings import DocumentObjectField from .mappings import NestedObject from .mappings import ObjectField if isinstance(data, (DocumentObjectField, ObjectField, NestedObject)): sel...	[ "def", "add_mapping", "(", "self", ",", "data", ",", "name", "=", "None", ")", ":", "from", ".", "mappings", "import", "DocumentObjectField", "from", ".", "mappings", "import", "NestedObject", "from", ".", "mappings", "import", "ObjectField", "if", "isinstance...	35.115385	12.346154
def query_pre_approvals(self, initial_date, final_date, page=None, max_results=None): """ query pre-approvals by date range """ last_page = False results = [] while last_page is False: search_result = self._consume_query_pre_approvals( ...	[ "def", "query_pre_approvals", "(", "self", ",", "initial_date", ",", "final_date", ",", "page", "=", "None", ",", "max_results", "=", "None", ")", ":", "last_page", "=", "False", "results", "=", "[", "]", "while", "last_page", "is", "False", ":", "search_r...	42.235294	17.117647
def master_open(): """master_open() -> (master_fd, slave_name) Open a pty master and return the fd, and the filename of the slave end. Deprecated, use openpty() instead.""" try: master_fd, slave_fd = os.openpty() except (AttributeError, OSError): pass else: slave_name = ...	[ "def", "master_open", "(", ")", ":", "try", ":", "master_fd", ",", "slave_fd", "=", "os", ".", "openpty", "(", ")", "except", "(", "AttributeError", ",", "OSError", ")", ":", "pass", "else", ":", "slave_name", "=", "os", ".", "ttyname", "(", "slave_fd"...	27.933333	17.666667
def post(self, request, bot_id, format=None): """ Add a new chat state --- serializer: KikChatStateSerializer responseMessages: - code: 401 message: Not authenticated - code: 400 message: Not valid request """ re...	[ "def", "post", "(", "self", ",", "request", ",", "bot_id", ",", "format", "=", "None", ")", ":", "return", "super", "(", "KikChatStateList", ",", "self", ")", ".", "post", "(", "request", ",", "bot_id", ",", "format", ")" ]	31.083333	10.916667
def destroy(name, call=None): ''' Destroy a machine by name CLI Example: .. code-block:: bash salt-cloud -d vm_name ''' if call == 'function': raise SaltCloudSystemExit( 'The destroy action must be called with -d, --destroy, ' '-a or --action.' ...	[ "def", "destroy", "(", "name", ",", "call", "=", "None", ")", ":", "if", "call", "==", "'function'", ":", "raise", "SaltCloudSystemExit", "(", "'The destroy action must be called with -d, --destroy, '", "'-a or --action.'", ")", "__utils__", "[", "'cloud.fire_event'", ...	25.7	21.85
def list_cluster_custom_object(self, group, version, plural, **kwargs): # noqa: E501 """list_cluster_custom_object # noqa: E501 list or watch cluster scoped custom objects # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, plea...	[ "def", "list_cluster_custom_object", "(", "self", ",", "group", ",", "version", ",", "plural", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")"...	77.5	49.857143
def load(*fps, missing=Missing.silent): """ Read a `.Configuration` instance from file-like objects. :param fps: file-like objects (supporting ``.read()``) :param missing: policy to be used when a configured key is missing, either as a `.Missing` instance or a default value :return: a `.Con...	[ "def", "load", "(", "", "fps", ",", "missing", "=", "Missing", ".", "silent", ")", ":", "return", "Configuration", "(", "", "(", "yaml", ".", "safe_load", "(", "fp", ".", "read", "(", ")", ")", "for", "fp", "in", "fps", ")", ",", "missing", "="...	43.727273	19.363636
def _to_java_object_rdd(self): """ Return a JavaRDD of Object by unpickling It will convert each Python object into Java object by Pyrolite, whenever the RDD is serialized in batch or not. """ rdd = self._pickled() return self.ctx._jvm.SerDeUtil.pythonToJava(rdd._jrdd, T...	[ "def", "_to_java_object_rdd", "(", "self", ")", ":", "rdd", "=", "self", ".", "_pickled", "(", ")", "return", "self", ".", "ctx", ".", "_jvm", ".", "SerDeUtil", ".", "pythonToJava", "(", "rdd", ".", "_jrdd", ",", "True", ")" ]	39.625	17
def classes(self, set_uri_or_id=None, nestedhierarchy=False): """Returns a dictionary of classes for the specified (sub)set (if None, default, the main set is selected)""" if set_uri_or_id and set_uri_or_id.startswith(('http://','https://')): set_uri = set_uri_or_id else: ...	[ "def", "classes", "(", "self", ",", "set_uri_or_id", "=", "None", ",", "nestedhierarchy", "=", "False", ")", ":", "if", "set_uri_or_id", "and", "set_uri_or_id", ".", "startswith", "(", "(", "'http://'", ",", "'https://'", ")", ")", ":", "set_uri", "=", "se...	54.088235	29.470588
def cake(return_X_y=True): """cake dataset Parameters ---------- return_X_y : bool, if True, returns a model-ready tuple of data (X, y) otherwise, returns a Pandas DataFrame Returns ------- model-ready tuple of data (X, y) OR Pandas DataFrame Notes ----...	[ "def", "cake", "(", "return_X_y", "=", "True", ")", ":", "# y is real", "# recommend LinearGAM", "cake", "=", "pd", ".", "read_csv", "(", "PATH", "+", "'/cake.csv'", ",", "index_col", "=", "0", ")", "if", "return_X_y", ":", "X", "=", "cake", "[", "[", ...	25.771429	22.285714
def available(name): ''' .. versionadded:: 2014.7.0 Returns ``True`` if the specified service is available, otherwise returns ``False``. CLI Example: .. code-block:: bash salt '*' service.available sshd ''' path = '/etc/rc.d/{0}'.format(name) return os.path.isfile(path) a...	[ "def", "available", "(", "name", ")", ":", "path", "=", "'/etc/rc.d/{0}'", ".", "format", "(", "name", ")", "return", "os", ".", "path", ".", "isfile", "(", "path", ")", "and", "os", ".", "access", "(", "path", ",", "os", ".", "X_OK", ")" ]	22.2	25.4
def from_yaml(self, node): ''' Implementes a !from_yaml constructor with the following syntax: !from_yaml filename key Arguments: filename: Filename of external YAML document from which to load, relative to the current YAML file. key...	[ "def", "from_yaml", "(", "self", ",", "node", ")", ":", "# Load the content from the node, as a scalar", "content", "=", "self", ".", "construct_scalar", "(", "node", ")", "# Split on unquoted spaces", "try", ":", "parts", "=", "shlex", ".", "split", "(", "content...	33.644444	21.644444
def count(fn, coll): """Return the count of True values returned by the predicate function applied to the collection :param fn: a predicate function :param coll: a collection :returns: an integer >>> count(lambda x: x % 2 == 0, [11, 22, 31, 24, 15]) 2 """ return len([x for x in co...	[ "def", "count", "(", "fn", ",", "coll", ")", ":", "return", "len", "(", "[", "x", "for", "x", "in", "coll", "if", "fn", "(", "x", ")", "is", "True", "]", ")" ]	25.307692	20
def github_token(token_path=None, token=None): """Return a github oauth token as a string. If `token` is defined, it is has precendece. If `token` and `token_path` are `None`, `~/.sq_github_token` looked for as a fallback. Parameters ---------- token_path : str, optional Path to the t...	[ "def", "github_token", "(", "token_path", "=", "None", ",", "token", "=", "None", ")", ":", "if", "token", "is", "None", ":", "if", "token_path", "is", "None", ":", "# Try the default token", "token_path", "=", "'~/.sq_github_token'", "token_path", "=", "os", ...	32.941176	19.529412
def _parse_record(self, record_type): """Parse a record.""" if self._next_token() in ['{', '(']: key = self._next_token() self.records[key] = { u'id': key, u'type': record_type.lower() } if self._next_token() == ',': ...	[ "def", "_parse_record", "(", "self", ",", "record_type", ")", ":", "if", "self", ".", "_next_token", "(", ")", "in", "[", "'{'", ",", "'('", "]", ":", "key", "=", "self", ".", "_next_token", "(", ")", "self", ".", "records", "[", "key", "]", "=", ...	43.703704	11.518519
def _process_targeting_reagents(self, reagent_type, limit=None): """ This method processes the gene targeting knockdown reagents, such as morpholinos, talens, and crisprs. We create triples for the reagents and pass the data into a hash map for use in the pheno_enviro method. ...	[ "def", "_process_targeting_reagents", "(", "self", ",", "reagent_type", ",", "limit", "=", "None", ")", ":", "LOG", ".", "info", "(", "\"Processing Gene Targeting Reagents\"", ")", "if", "self", ".", "test_mode", ":", "graph", "=", "self", ".", "testgraph", "e...	40.964286	21.892857

def participate(self): """Finish reading and send text""" try: while True: left = WebDriverWait(self.driver, 10).until( EC.element_to_be_clickable((By.ID, "left_button")) ) right = WebDriverWait(self.driver, 10).until( ...

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35.6

19.733333

def esxcli(host, user, pwd, cmd, protocol=None, port=None, esxi_host=None, credstore=None): ''' Shell out and call the specified esxcli commmand, parse the result and return something sane. :param host: ESXi or vCenter host to connect to :param user: User to connect as, usually root :param pwd:...

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42.618182

25.890909

def _file_path(self, uid): """Create and return full file path for DayOne entry""" file_name = '%s.doentry' % (uid) return os.path.join(self.dayone_journal_path, file_name)

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48.25

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def main(argv=None): """Entry point for Rewind. Parses input and calls run() for the real work. Parameters: argv -- sys.argv arguments. Can be set for testing purposes. returns -- the proposed exit code for the program. """ parser = argparse.ArgumentParser( description='Event ...

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30.965517

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def rc_channels_scaled_send(self, time_boot_ms, port, chan1_scaled, chan2_scaled, chan3_scaled, chan4_scaled, chan5_scaled, chan6_scaled, chan7_scaled, chan8_scaled, rssi, force_mavlink1=False): ''' The scaled values of the RC channels received. (-100%) -10000, (0%) 0, (1...

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107.85

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def is_group_name_exists(self, group_name): """ check if group with given name is already exists """ groups = self.m["groups"] for g in groups: if (g["group_name"] == group_name): return True return False

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36.857143

9.428571

def sample_stats_prior_to_xarray(self): """Extract sample_stats from fit.""" dtypes = {"divergent__": bool, "n_leapfrog__": np.int64, "treedepth__": np.int64} # copy dims and coords dims = deepcopy(self.dims) if self.dims is not None else {} coords = deepcopy(self.coords) if sel...

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def move_partition(self, partition, broker_destination): """Move partition to destination broker and adjust replicas.""" self.remove_partition(partition) broker_destination.add_partition(partition)

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54.5

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def refine_pi_cation_laro(self, all_picat, stacks): """Just important for constellations with histidine involved. If the histidine ring is positioned in stacking position to an aromatic ring in the ligand, there is in most cases stacking and pi-cation interaction reported as histidine also carri...

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52.5

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def patch_python_logging_handlers(): ''' Patch the python logging handlers with out mixed-in classes ''' logging.StreamHandler = StreamHandler logging.FileHandler = FileHandler logging.handlers.SysLogHandler = SysLogHandler logging.handlers.WatchedFileHandler = WatchedFileHandler logging...

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40.818182

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def _find_node_by_indices(self, point): """"Find the GSNode that is refered to by the given indices. See GSNode::_indices() """ path_index, node_index = point path = self.paths[int(path_index)] node = path.nodes[int(node_index)] return node

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32.111111

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def scramble_string(self, length): """Return random string""" return fake.text(length) if length > 5 else ''.join([fake.random_letter() for n in range(0, length)])

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59

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def add_header_callback(self, cb, port, channel, port_mask=0xFF, channel_mask=0xFF): """ Add a callback for a specific port/header callback with the possibility to add a mask for channel and port for multiple hits for same callback. """ self.cb...

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47.222222

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def eval(self, data, data_store, *, exclude=None): """ Return a new object in which callable parameters have been evaluated. Native types are not touched and simply returned, while callable methods are executed and their return value is returned. Args: data (MultiTaskData):...

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41.419355

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def setup( hosts, default_keyspace, consistency=ConsistencyLevel.ONE, lazy_connect=False, retry_connect=False, **kwargs): """ Records the hosts and connects to one of them :param hosts: list of hosts, see http://datastax.github.io/python-driver/api/cassandra/...

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35.188679

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def sphergal_to_rectgal(l,b,d,vr,pmll,pmbb,degree=False): """ NAME: sphergal_to_rectgal PURPOSE: transform phase-space coordinates in spherical Galactic coordinates to rectangular Galactic coordinates (can take vector inputs) INPUT: l - Galactic longitude (rad) b - Gala...

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23.909091

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def generate_thumbnail(source, outname, box, delay, fit=True, options=None, converter='ffmpeg'): """Create a thumbnail image for the video source, based on ffmpeg.""" logger = logging.getLogger(__name__) tmpfile = outname + ".tmp.jpg" # dump an image of the video cmd = [conv...

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40.705882

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def setColor(self, vehID, color): """setColor(string, (integer, integer, integer, integer)) sets color for vehicle with the given ID. i.e. (255,0,0,0) for the color red. The fourth integer (alpha) is only used when drawing vehicles with raster images """ self._connection....

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53.545455

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def register_backend(name, backend, allow_overwrite=False): """Register new backend. Args: name (str): The name of backend. gateclass (type): The type object of backend allow_overwrite (bool, optional): If True, allow to overwrite the existing backend. ...

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42.772727

21.636364

def let_variable(self, frame_id, var_name, expression_value): """ Let a frame's var with a value by building then eval a let expression with breakoints disabled. """ breakpoints_backup = IKBreakpoint.backup_breakpoints_state() IKBreakpoint.disable_all_breakpoints() let_...

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38.137931

15.931034

def fromhdf5sorted(source, where=None, name=None, sortby=None, checkCSI=False, start=None, stop=None, step=None): """ Provides access to an HDF5 table, sorted by an indexed column, e.g.:: >>> import petl as etl >>> import tables >>> # set up a new hdf5 table to demons...

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37.980769

17.211538

def boolean_input(self, question, default=None): ''' Method for yes/no boolean inputs ''' result = input("%s: " % question) if not result and default is not None: return default while len(result) < 1 or result[0].lower() not in "yn": result...

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38.9

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def nt_db_search(self, files, base, unpack, euk_check, search_method, maximum_range, threads, evalue): ''' Nucleotide database search pipeline - pipeline where reads are searched as nucleotides, and hits are identified using nhmmer searches Parameters ------...

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46

23.92

def create_from_textgrid(self,word_list): """ Fills the ParsedResponse object with a list of TextGrid.Word objects originally from a .TextGrid file. :param list word_list: List of TextGrid.Word objects corresponding to words/tokens in the subject response. Modifies: - self.timing_i...

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49.571429

24.380952

def iter_records_for(self, package_name): """ Iterate records for a specific package. """ entry_points = self.packages.get(package_name, NotImplemented) if entry_points is NotImplemented: logger.debug( "package '%s' has not declared any entry points f...

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36.05

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def start_external_instances(self, late_start=False): """Launch external instances that are load correctly :param late_start: If late_start, don't look for last_init_try :type late_start: bool :return: None """ for instance in [i for i in self.instances if i.is_external]...

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44.5

21.333333

def set_log_level(self, level): """Set the logging level. Parameters ---------- level : logging level constant The value to set the logging level to. """ self._log_level = level if self._python_logger: try: level = self.PY...

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30.25

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def post_helper(form_tag=True, edit_mode=False): """ Post's form layout helper """ helper = FormHelper() helper.form_action = '.' helper.attrs = {'data_abide': ''} helper.form_tag = form_tag fieldsets = [ Row( Column( 'text', css_c...

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20.794872

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def get_mysql_connection(host, user, port, password, database, ssl={}): """ MySQL connection """ return pymysql.connect(host=host, user=user, port=port, password=password, db=database, ...

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def execute(self, command, blocking=True, exec_create_kwargs=None, exec_start_kwargs=None): """ Execute a command in this container -- the container needs to be running. If the command fails, a ConuException is thrown. This is a blocking call by default and writes output of the command...

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def _parse_vertex_tuple(s): """Parse vertex indices in '/' separated form (like 'i/j/k', 'i//k' ...).""" vt = [0, 0, 0] for i, c in enumerate(s.split('/')): if c: vt[i] = int(c) return tuple(vt)

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def clear_request(name=None): ''' .. versionadded:: 2017.7.3 Clear out the state execution request without executing it CLI Example: .. code-block:: bash salt '*' state.clear_request ''' notify_path = os.path.join(__opts__['cachedir'], 'req_state.p') serial = salt.payload.Ser...

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def scramble(expnums, ccd, version='p', dry_run=False): """run the plant script on this combination of exposures""" mjds = [] fobjs = [] for expnum in expnums: filename = storage.get_image(expnum, ccd=ccd, version=version) fobjs.append(fits.open(filename)) # Pull out values to r...

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def peek_string(self, lpBaseAddress, fUnicode = False, dwMaxSize = 0x1000): """ Tries to read an ASCII or Unicode string from the address space of the process. @see: L{read_string} @type lpBaseAddress: int @param lpBaseAddress: Memory address to begin reading. ...

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def _set_zoning(self, v, load=False): """ Setter method for zoning, mapped from YANG variable /zoning (container) If this variable is read-only (config: false) in the source YANG file, then _set_zoning is considered as a private method. Backends looking to populate this variable should do so via...

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def plantloopfieldlists(data): """return the plantloopfield list""" objkey = 'plantloop'.upper() numobjects = len(data.dt[objkey]) return [[ 'Name', 'Plant Side Inlet Node Name', 'Plant Side Outlet Node Name', 'Plant Side Branch List Name', 'Demand Side Inlet Node...

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def _extend_spikes(spike_ids, spike_clusters): """Return all spikes belonging to the clusters containing the specified spikes.""" # We find the spikes belonging to modified clusters. # What are the old clusters that are modified by the assignment? old_spike_clusters = spike_clusters[spike_ids] u...

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def find_profile(self, bitarray, eep_rorg, rorg_func, rorg_type, direction=None, command=None): ''' Find profile and data description, matching RORG, FUNC and TYPE ''' if not self.init_ok: self.logger.warn('EEP.xml not loaded!') return None if eep_rorg not in self.telegr...

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def assert_instance_deleted(self, model_class, **kwargs): """ Checks if the model instance was deleted from the database. For example:: >>> with self.assert_instance_deleted(Article, slug='lorem-ipsum'): ... Article.objects.get(slug='lorem-ipsum').delete() """ ...

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def destroy(self, force=False): """UnmanagedLXC Destructor. It requires force to be true in order to work. Otherwise it throws an error. """ if force: super(UnmanagedLXC, self).destroy() else: raise UnmanagedLXCError('Destroying an unmanaged LXC m...

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def pad(data_to_pad, block_size, style='pkcs7'): """Apply standard padding. :Parameters: data_to_pad : byte string The data that needs to be padded. block_size : integer The block boundary to use for padding. The output length is guaranteed to be a multiple of ``block_size``...

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def _getApplication(self): """Get the base application UIElement. If the UIElement is a child of the application, it will try to get the AXParent until it reaches the top application level element. """ app = self while True: try: app =...

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def list_pools(self, retrieve_all=True, **_params): """Fetches a list of all load balancer pools for a project.""" # Pass filters in "params" argument to do_request return self.list('pools', self.pools_path, retrieve_all, **_params)

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def read_label_list(path): """ Reads labels from an Audacity label file and returns them wrapped in a :py:class:`audiomate.annotations.LabelList`. Args: path (str): Path to the Audacity label file Returns: audiomate.annotations.LabelList: Label list containing the labels """ ...

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def get_contig_names(fasta_file): """ Gets contig names from a fasta file using SeqIO. :param fasta_file: Full path to uncompressed, fasta-formatted file :return: List of contig names. """ contig_names = list() for contig in SeqIO.parse(fasta_file, 'fasta'): contig_names.append(conti...

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def list_drama_series(self, sort=META.SORT_ALPHA, limit=META.MAX_SERIES, offset=0): """Get a list of drama series @param str sort pick how results should be sorted, should be one of META.SORT_* @param int limit limit number of series to return, there doesn...

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def user_has_super_roles(): """Return whether the current belongs to superuser roles """ member = api.get_current_user() super_roles = ["LabManager", "Manager"] diff = filter(lambda role: role in super_roles, member.getRoles()) return len(diff) > 0

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def dispatch_line(self, frame): """Handle line action and return the next line callback.""" callback = TerminalPdb.dispatch_line(self, frame) # If the ipdb session ended, don't return a callback for the next line if self.stoplineno == -1: return None return callback

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def ensure_valid_environment_config(module_name, config): """Exit if config is invalid.""" if not config.get('namespace'): LOGGER.fatal("staticsite: module %s's environment configuration is " "missing a namespace definition!", module_name) sys.exit(1)

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def add_data_point(self, x, y): """Adds a data point to the series. :param x: The numerical x value to be added. :param y: The numerical y value to be added.""" if not is_numeric(x): raise TypeError("x value must be numeric, not '%s'" % str(x)) if not is_numeric(y):...

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def parse_uploaded_image(field): '''Parse an uploaded image and save into a db.ImageField()''' args = image_parser.parse_args() image = args['file'] if image.mimetype not in IMAGES_MIMETYPES: api.abort(400, 'Unsupported image format') bbox = args.get('bbox', None) if bbox: bbox ...

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def write_property(fh, key, value): """ Write a single property to the file in Java properties format. :param fh: a writable file-like object :param key: the key to write :param value: the value to write """ if key is COMMENT: write_comment(fh, value) return _require_string(key, 'keys'...

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def determine_device(kal_out): """Extract and return device from scan results.""" device = "" while device == "": for line in kal_out.splitlines(): if "Using device " in line: device = str(line.split(' ', 2)[-1]) if device == "": device = None retu...

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def repair(source, validate_archive=False): """Use auditwheel (https://github.com/pypa/auditwheel) to attempt and repair all wheels in a wagon. The repair process will: 1. Extract the wagon and its metadata 2. Repair all wheels 3. Update the metadata with the new wheel names and platform 4...

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def getSpktSpkid(cellGids=[], timeRange=None, allCells=False): '''return spike ids and times; with allCells=True just need to identify slice of time so can omit cellGids''' from .. import sim import pandas as pd try: # Pandas 0.24 and later from pandas import _lib as pandaslib except: #...

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def old(self): """ The old value from the event. """ ori = self.original.action if isinstance(ori, ( types.ChannelAdminLogEventActionChangeAbout, types.ChannelAdminLogEventActionChangeTitle, types.ChannelAdminLogEventActionChangeUse...

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def get_views(self, app_id, include_standard_views=False): """ Get all of the views for the specified app :param app_id: the app containing the views :param include_standard_views: defaults to false. Set to true if you wish to include standard views. """ include_standard...

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def fw_int_to_hex(*args): """Pack integers into hex string. Use little-endian and unsigned int format. """ return binascii.hexlify( struct.pack('<{}H'.format(len(args)), *args)).decode('utf-8')

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def prt_goids(self, goids=None, prtfmt=None, sortby=True, prt=sys.stdout): """Given GO IDs, print decriptive info about each GO Term.""" if goids is None: goids = self.go_sources nts = self.get_nts(goids, sortby) if prtfmt is None: prtfmt = self.prt_attr['fmta'] ...

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def get_stream(self, channel): """Return the stream of the given channel :param channel: the channel that is broadcasting. Either name or models.Channel instance :type channel: :class:`str` | :class:`models.Channel` :returns: the stream or None, if the channel is...

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39.133333

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def generate_single_kcorrection_listing( log, pathToOutputDirectory, pathToSpectralDatabase, model, restFrameFilter, redshift, temporalResolution=4.0): """ *Given a redshift generate a dictionary of k-correction polynomials for the MCS.* **Key Argumen...

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def _upload_part(api, session, url, upload, part_number, part, retry_count, timeout): """ Used by the worker to upload a part to the storage service. :param api: Api instance. :param session: Storage service session. :param url: Part url. :param upload: Upload identifier. :p...

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def main(): """Function to remove temperature effect from field data """ options = handle_options() # read in observed and synthetic data elecs, d_obs = readin_volt(options.d_obs) elecs, d_est = readin_volt(options.d_est) elecs, d_estTC = readin_volt(options.d_estTC) # calculate correct...

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def revoke_group_permission( self, group_name, source_group_name, source_group_owner_id): """ This is a convenience function that wraps the "authorize group" functionality of the C{authorize_security_group} method. For an explanation of the parameters, see C{revoke_security_grou...

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def sha1(self): """ :return: The SHA1 hash of the DER-encoded bytes of this public key info """ if self._sha1 is None: self._sha1 = hashlib.sha1(byte_cls(self['public_key'])).digest() return self._sha1

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def use_plenary_sequence_rule_enabler_rule_view(self): """Pass through to provider SequenceRuleEnablerRuleLookupSession.use_plenary_sequence_rule_enabler_rule_view""" self._object_views['sequence_rule_enabler_rule'] = PLENARY # self._get_provider_session('sequence_rule_enabler_rule_lookup_sessio...

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def _check_array_parms(is_array, array_size, value, element_kind, element_name): # pylint: disable=unused-argument # The array_size argument is unused. """ Check whether array-related parameters are ok. """ # The following case has been disabled because it cannot happen g...

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43.428571

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def create(handler, item_document): """Create a new item from a JSON document""" data = {'operation': 'create', 'item': json.load(item_document)} handler.invoke(data)

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37.2

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def Operation(self, x, y): """Whether x is fully contained in y.""" if x in y: return True # x might be an iterable # first we need to skip strings or we'll do silly things # pylint: disable=consider-merging-isinstance if isinstance(x, py2to3.STRING_TYPES) or isinstance(x, bytes): r...

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def from_xdr(cls, xdr): """Create an :class:`Asset` object from its base64 encoded XDR representation. :param bytes xdr: The base64 encoded XDR Asset object. :return: A new :class:`Asset` object from its encoded XDR representation. """ xdr_decoded = base64....

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def dice_hard_coe(output, target, threshold=0.5, axis=(1, 2, 3), smooth=1e-5): """Non-differentiable Sørensen–Dice coefficient for comparing the similarity of two batch of data, usually be used for binary image segmentation i.e. labels are binary. The coefficient between 0 to 1, 1 if totally match. Par...

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def _parse_endofnames(client, command, actor, args): """Parse an ENDOFNAMES and dispatch a NAMES event for the channel.""" args = args.split(" :", 1)[0] # Strip off human-readable message _, _, channel = args.rpartition(' ') channel = client.server.get_channel(channel) or channel.lower() client.disp...

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def GetReportDownloadHeaders(self, **kwargs): """Returns a dictionary of headers for a report download request. Note that the given keyword arguments will override any settings configured from the googleads.yaml file. Args: **kwargs: Optional keyword arguments. Keyword Arguments: clie...

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def get_current_word_and_position(self, completion=False): """Return current word, i.e. word at cursor position, and the start position""" cursor = self.textCursor() if cursor.hasSelection(): # Removes the selection and moves the cursor to the left side ...

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def get_access_token(self, code, state=None): ''' In callback url: http://host/callback?code=123&state=xyz use code and state to get an access token. ''' kw = dict(client_id=self._client_id, client_secret=self._client_secret, code=code) if self._redirect_uri: ...

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def check_signature(signature, key, data): """Compute the HMAC signature and test against a given hash.""" if isinstance(key, type(u'')): key = key.encode() digest = 'sha1=' + hmac.new(key, data, hashlib.sha1).hexdigest() # Covert everything to byte sequences if isinstance(digest, type(u''...

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def findparent(self, inputtemplates): """Find the most suitable parent, that is: the first matching unique/multi inputtemplate""" for inputtemplate in inputtemplates: if self.unique == inputtemplate.unique: return inputtemplate.id return None

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def write_pkg_file(self, file): """Write the PKG-INFO format data to a file object. """ version = self.get_metadata_version() if six.PY2: def write_field(key, value): file.write("%s: %s\n" % (key, self._encode_field(value))) else: def write_field(key, value): ...

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32.72973

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def dry_lapse(pressure, temperature, ref_pressure=None): r"""Calculate the temperature at a level assuming only dry processes. This function lifts a parcel starting at `temperature`, conserving potential temperature. The starting pressure can be given by `ref_pressure`. Parameters ---------- p...

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def require_auth(request: Request, exceptions: bool=True) -> User: """ Returns authenticated User. :param request: HttpRequest :param exceptions: Raise (NotAuthenticated) exception. Default is True. :return: User """ if not request.user or not request.user.is_authenticated: if except...

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def write_output(output_report, sample_name, multi_positions, genus, percent_contam, contam_stddev, total_gene_length, database_download_date, snp_cutoff=3, cgmlst=None): """ Function that writes the output generated by ConFindr to a report file. Appends to a file that already exists, or cr...

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def _at_function(self, calculator, rule, scope, block): """ Implements @mixin and @function """ if not block.argument: raise SyntaxError("%s requires a function name (%s)" % (block.directive, rule.file_and_line)) funct, argspec_node = self._get_funct_def(rule, calcul...

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41.188235

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def _ls_sites(path): """ List only sites in the domain_sites() to ensure we co-exist with other projects """ with cd(path): sites = run('ls').split('\n') doms = [d.name for d in domain_sites()] dom_sites = [] for s in sites: ds = s.split('-')[0] d...

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31.214286

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def CreateSession( cls, artifact_filter_names=None, command_line_arguments=None, debug_mode=False, filter_file_path=None, preferred_encoding='utf-8', preferred_time_zone=None, preferred_year=None): """Creates a session attribute container. Args: artifact_filter_names (Optional[list[str]...

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def add_mapping(self, data, name=None): """ Add a new mapping """ from .mappings import DocumentObjectField from .mappings import NestedObject from .mappings import ObjectField if isinstance(data, (DocumentObjectField, ObjectField, NestedObject)): sel...

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def query_pre_approvals(self, initial_date, final_date, page=None, max_results=None): """ query pre-approvals by date range """ last_page = False results = [] while last_page is False: search_result = self._consume_query_pre_approvals( ...

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def master_open(): """master_open() -> (master_fd, slave_name) Open a pty master and return the fd, and the filename of the slave end. Deprecated, use openpty() instead.""" try: master_fd, slave_fd = os.openpty() except (AttributeError, OSError): pass else: slave_name = ...

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27.933333

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def post(self, request, bot_id, format=None): """ Add a new chat state --- serializer: KikChatStateSerializer responseMessages: - code: 401 message: Not authenticated - code: 400 message: Not valid request """ re...

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31.083333

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def destroy(name, call=None): ''' Destroy a machine by name CLI Example: .. code-block:: bash salt-cloud -d vm_name ''' if call == 'function': raise SaltCloudSystemExit( 'The destroy action must be called with -d, --destroy, ' '-a or --action.' ...

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25.7

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def list_cluster_custom_object(self, group, version, plural, **kwargs): # noqa: E501 """list_cluster_custom_object # noqa: E501 list or watch cluster scoped custom objects # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, plea...

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77.5

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def load(*fps, missing=Missing.silent): """ Read a `.Configuration` instance from file-like objects. :param fps: file-like objects (supporting ``.read()``) :param missing: policy to be used when a configured key is missing, either as a `.Missing` instance or a default value :return: a `.Con...

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43.727273

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def _to_java_object_rdd(self): """ Return a JavaRDD of Object by unpickling It will convert each Python object into Java object by Pyrolite, whenever the RDD is serialized in batch or not. """ rdd = self._pickled() return self.ctx._jvm.SerDeUtil.pythonToJava(rdd._jrdd, T...

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39.625

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def classes(self, set_uri_or_id=None, nestedhierarchy=False): """Returns a dictionary of classes for the specified (sub)set (if None, default, the main set is selected)""" if set_uri_or_id and set_uri_or_id.startswith(('http://','https://')): set_uri = set_uri_or_id else: ...

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54.088235

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def cake(return_X_y=True): """cake dataset Parameters ---------- return_X_y : bool, if True, returns a model-ready tuple of data (X, y) otherwise, returns a Pandas DataFrame Returns ------- model-ready tuple of data (X, y) OR Pandas DataFrame Notes ----...

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25.771429

22.285714

def available(name): ''' .. versionadded:: 2014.7.0 Returns ``True`` if the specified service is available, otherwise returns ``False``. CLI Example: .. code-block:: bash salt '*' service.available sshd ''' path = '/etc/rc.d/{0}'.format(name) return os.path.isfile(path) a...

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22.2

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def from_yaml(self, node): ''' Implementes a !from_yaml constructor with the following syntax: !from_yaml filename key Arguments: filename: Filename of external YAML document from which to load, relative to the current YAML file. key...

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33.644444

21.644444

def count(fn, coll): """Return the count of True values returned by the predicate function applied to the collection :param fn: a predicate function :param coll: a collection :returns: an integer >>> count(lambda x: x % 2 == 0, [11, 22, 31, 24, 15]) 2 """ return len([x for x in co...

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25.307692

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def github_token(token_path=None, token=None): """Return a github oauth token as a string. If `token` is defined, it is has precendece. If `token` and `token_path` are `None`, `~/.sq_github_token` looked for as a fallback. Parameters ---------- token_path : str, optional Path to the t...

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32.941176

19.529412

def _parse_record(self, record_type): """Parse a record.""" if self._next_token() in ['{', '(']: key = self._next_token() self.records[key] = { u'id': key, u'type': record_type.lower() } if self._next_token() == ',': ...

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43.703704

11.518519

def _process_targeting_reagents(self, reagent_type, limit=None): """ This method processes the gene targeting knockdown reagents, such as morpholinos, talens, and crisprs. We create triples for the reagents and pass the data into a hash map for use in the pheno_enviro method. ...

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40.964286

21.892857