kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def count_nonzero(data, mapper=None, blen=None, storage=None, create='array', **kwargs): """Count the number of non-zero elements.""" return reduce_axis(data, reducer=np.count_nonzero, block_reducer=np.add, mapper=mapper, blen=blen, storage=storage...	[ "def", "count_nonzero", "(", "data", ",", "mapper", "=", "None", ",", "blen", "=", "None", ",", "storage", "=", "None", ",", "create", "=", "'array'", ",", "", "", "kwargs", ")", ":", "return", "reduce_axis", "(", "data", ",", "reducer", "=", "np",...	56.833333	15.5
def _remove_strings(code) : """ Remove strings in code """ removed_string = "" is_string_now = None for i in range(0, len(code)-1) : append_this_turn = False if code[i] == "'" and (i == 0 or code[i-1] != '\\') : if is_string_now == "'" : is_string_now = None elif is_string_now == None ...	[ "def", "_remove_strings", "(", "code", ")", ":", "removed_string", "=", "\"\"", "is_string_now", "=", "None", "for", "i", "in", "range", "(", "0", ",", "len", "(", "code", ")", "-", "1", ")", ":", "append_this_turn", "=", "False", "if", "code", "[", ...	22.166667	19.666667
def best_fit_likelihood(self): """ returns the log likelihood of the best fit model of the current state of this class :return: log likelihood, float """ kwargs_lens, kwargs_source, kwargs_lens_light, kwargs_ps, kwargs_cosmo = self.best_fit(bijective=False) param_class =...	[ "def", "best_fit_likelihood", "(", "self", ")", ":", "kwargs_lens", ",", "kwargs_source", ",", "kwargs_lens_light", ",", "kwargs_ps", ",", "kwargs_cosmo", "=", "self", ".", "best_fit", "(", "bijective", "=", "False", ")", "param_class", "=", "self", ".", "_par...	49.5	26.666667
def send_message(self, message, mention_id=None, mentions=[]): """ Send the specified message to twitter, with appropriate mentions, tokenized as necessary :param message: Message to be sent :param mention_id: In-reply-to mention_id (to link messages to a previous message) :param...	[ "def", "send_message", "(", "self", ",", "message", ",", "mention_id", "=", "None", ",", "mentions", "=", "[", "]", ")", ":", "messages", "=", "self", ".", "tokenize", "(", "message", ",", "self", ".", "MESSAGE_LENGTH", ",", "mentions", ")", "code", "=...	50.44	24.44
def dropAllCollections(self): """drops all public collections (graphs included) from the database""" for graph_name in self.graphs: self.graphs[graph_name].delete() for collection_name in self.collections: # Collections whose name starts with '_' are system collections ...	[ "def", "dropAllCollections", "(", "self", ")", ":", "for", "graph_name", "in", "self", ".", "graphs", ":", "self", ".", "graphs", "[", "graph_name", "]", ".", "delete", "(", ")", "for", "collection_name", "in", "self", ".", "collections", ":", "# Collectio...	47	11.444444
def _register_engine(self, uid): """New engine with ident `uid` became available.""" # head of the line: self.targets.insert(0,uid) self.loads.insert(0,0) # initialize sets self.completed[uid] = set() self.failed[uid] = set() self.pending[uid] = {} ...	[ "def", "_register_engine", "(", "self", ",", "uid", ")", ":", "# head of the line:", "self", ".", "targets", ".", "insert", "(", "0", ",", "uid", ")", "self", ".", "loads", ".", "insert", "(", "0", ",", "0", ")", "# initialize sets", "self", ".", "comp...	27.846154	13.615385
def get_parent_obj(obj): """ Gets the name of the object containing @obj and returns as a string @obj: any python object -> #str parent object name or None .. from redis_structures.debug import get_parent_obj get_parent_obj(get_parent_obj) # -> <module ...	[ "def", "get_parent_obj", "(", "obj", ")", ":", "try", ":", "cls", "=", "get_class_that_defined_method", "(", "obj", ")", "if", "cls", "and", "cls", "!=", "obj", ":", "return", "cls", "except", "AttributeError", ":", "pass", "if", "hasattr", "(", "obj", "...	30.931818	18.068182
def unpack(cls, msg): """Construct an _OpReply from raw bytes.""" # PYTHON-945: ignore starting_from field. flags, cursor_id, _, number_returned = cls.UNPACK_FROM(msg) # Convert Python 3 memoryview to bytes. Note we should call # memoryview.tobytes() if we start using memoryview...	[ "def", "unpack", "(", "cls", ",", "msg", ")", ":", "# PYTHON-945: ignore starting_from field.", "flags", ",", "cursor_id", ",", "_", ",", "number_returned", "=", "cls", ".", "UNPACK_FROM", "(", "msg", ")", "# Convert Python 3 memoryview to bytes. Note we should call", ...	47.555556	20.555556
def get_logger(name, file_name=None, stream=None, template=None, propagate=False, level=None): """Get a logger by name. """ logger = logging.getLogger(name) running_tests = ( 'test' in sys.argv # running with setup.py or sys.argv[0].endswith('py.test')) # running with py.test if ...	[ "def", "get_logger", "(", "name", ",", "file_name", "=", "None", ",", "stream", "=", "None", ",", "template", "=", "None", ",", "propagate", "=", "False", ",", "level", "=", "None", ")", ":", "logger", "=", "logging", ".", "getLogger", "(", "name", "...	28.764706	21.323529
async def listArtifacts(self, args, *kwargs): """ Get Artifacts from Run Returns a list of artifacts and associated meta-data for a given run. As a task may have many artifacts paging may be necessary. If this end-point returns a `continuationToken`, you should call the end-p...	[ "async", "def", "listArtifacts", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "return", "await", "self", ".", "_makeApiCall", "(", "self", ".", "funcinfo", "[", "\"listArtifacts\"", "]", ",", "", "args", ",", "", "", "kwargs", ...	38.5	27.7
def next_question(self): """Returns the next `Question` in the questionnaire, or `None` if there are no questions left. Returns first question for whose key there is no answer and for which condition is satisfied, or for which there is no condition. """ for key, questions...	[ "def", "next_question", "(", "self", ")", ":", "for", "key", ",", "questions", "in", "self", ".", "questions", ".", "items", "(", ")", ":", "if", "key", "in", "self", ".", "answers", ":", "continue", "for", "question", "in", "questions", ":", "if", "...	42.538462	15.153846
def open_file_from_iso(self, **kwargs): # type: (str) -> PyCdlibIO ''' Open a file for reading in a context manager. This allows the user to operate on the file in user-defined chunks (utilizing the read() method of the returned context manager). Parameters: is...	[ "def", "open_file_from_iso", "(", "self", ",", "", "", "kwargs", ")", ":", "# type: (str) -> PyCdlibIO", "if", "not", "self", ".", "_initialized", ":", "raise", "pycdlibexception", ".", "PyCdlibInvalidInput", "(", "'This object is not yet initialized; call either open()...	49.471698	30.641509
def disconnect_sync(self, conn_id): """Synchronously disconnect from a connected device Args: conn_id (int): A unique identifier that will refer to this connection Returns: dict: A dictionary with two elements 'success': a bool with the result of the con...	[ "def", "disconnect_sync", "(", "self", ",", "conn_id", ")", ":", "done", "=", "threading", ".", "Event", "(", ")", "result", "=", "{", "}", "def", "disconnect_done", "(", "conn_id", ",", "adapter_id", ",", "status", ",", "reason", ")", ":", "result", "...	30.875	23.375
def parametric_function(fx='sin(t)', fy='cos(t)', tmin=-1, tmax=1, steps=200, p='t', g=None, erange=False, **kwargs): """ Plots the parametric function over the specified range Parameters ---------- fx='sin(t)', fy='cos(t)' Functions or (matching) lists of functions to plot; ...	[ "def", "parametric_function", "(", "fx", "=", "'sin(t)'", ",", "fy", "=", "'cos(t)'", ",", "tmin", "=", "-", "1", ",", "tmax", "=", "1", ",", "steps", "=", "200", ",", "p", "=", "'t'", ",", "g", "=", "None", ",", "erange", "=", "False", ",", "*...	27.791045	21.761194
def before_sample(analysis_request): """Method triggered before "sample" transition for the Analysis Request passed in is performed """ if not analysis_request.getDateSampled(): analysis_request.setDateSampled(DateTime()) if not analysis_request.getSampler(): analysis_request.setSamp...	[ "def", "before_sample", "(", "analysis_request", ")", ":", "if", "not", "analysis_request", ".", "getDateSampled", "(", ")", ":", "analysis_request", ".", "setDateSampled", "(", "DateTime", "(", ")", ")", "if", "not", "analysis_request", ".", "getSampler", "(", ...	42.875	7.125
def get_record(self): """Override the base get_record.""" self.update_system_numbers() self.add_systemnumber("CDS") self.fields_list = [ "024", "041", "035", "037", "088", "100", "110", "111", "242", "245", "246", "260", "269", "300", "502", "650", "65...	[ "def", "get_record", "(", "self", ")", ":", "self", ".", "update_system_numbers", "(", ")", "self", ".", "add_systemnumber", "(", "\"CDS\"", ")", "self", ".", "fields_list", "=", "[", "\"024\"", ",", "\"041\"", ",", "\"035\"", ",", "\"037\"", ",", "\"088\"...	33.325	13.05
def status(self): """Get the status of the daemon.""" if self.pidfile is None: raise DaemonError('Cannot get status of daemon without PID file') pid = self._read_pidfile() if pid is None: self._emit_message( '{prog} -- not running\n'.format(prog=s...	[ "def", "status", "(", "self", ")", ":", "if", "self", ".", "pidfile", "is", "None", ":", "raise", "DaemonError", "(", "'Cannot get status of daemon without PID file'", ")", "pid", "=", "self", ".", "_read_pidfile", "(", ")", "if", "pid", "is", "None", ":", ...	37.18	19.96
def _occursOn(self, myDate): """ Returns true iff an occurence of this event starts on this date (given in the event's own timezone). (Does not include postponements, but does exclude cancellations.) """ # TODO analyse which is faster (rrule or db) and test that first ...	[ "def", "_occursOn", "(", "self", ",", "myDate", ")", ":", "# TODO analyse which is faster (rrule or db) and test that first", "if", "myDate", "not", "in", "self", ".", "repeat", ":", "return", "False", "if", "CancellationPage", ".", "events", ".", "child_of", "(", ...	39.714286	19.285714
def _do_write(fname, variable, version, date, table): """Write combining tables to filesystem as python code.""" # pylint: disable=R0914 # Too many local variables (19/15) (col 4) print("writing {} ..".format(fname)) import unicodedata import datetime impo...	[ "def", "_do_write", "(", "fname", ",", "variable", ",", "version", ",", "date", ",", "table", ")", ":", "# pylint: disable=R0914", "# Too many local variables (19/15) (col 4)", "print", "(", "\"writing {} ..\"", ".", "format", "(", "fname", ")", ")", "import...	45.45	13.825
def set_result(self, result): """Complete all tasks. """ for future in self.traverse(): # All cancelled futures should have callbacks to removed itself # from this linked list. However, these callbacks are scheduled in # an event loop, so we could still find them in o...	[ "def", "set_result", "(", "self", ",", "result", ")", ":", "for", "future", "in", "self", ".", "traverse", "(", ")", ":", "# All cancelled futures should have callbacks to removed itself", "# from this linked list. However, these callbacks are scheduled in", "# an event loop, s...	47.222222	14.777778
def factory(self, classname, args, *kwargs): """ Creates an instance of class looking for it in each module registered. You can add needed params to instance the class. :param classname: Class name you want to create an instance. :type classname: str :return: An instan...	[ "def", "factory", "(", "self", ",", "classname", ",", "", "args", ",", "", "", "kwargs", ")", ":", "klass", "=", "self", ".", "load_class", "(", "classname", ")", "return", "self", ".", "get_factory_by_class", "(", "klass", ")", "(", "", "args", ...	33.357143	18.928571
def udot(op1, op2): """Matrix or vector dot product that preserves units This is a wrapper around np.dot that preserves units. Examples -------- >>> from unyt import km, s >>> a = np.eye(2)km >>> b = (np.ones((2, 2)) 2)s >>> print(udot(a, b)) [[2. 2.] [2. 2.]] kms """...	[ "def", "udot", "(", "op1", ",", "op2", ")", ":", "dot", "=", "np", ".", "dot", "(", "op1", ".", "d", ",", "op2", ".", "d", ")", "units", "=", "op1", ".", "units", "*", "op2", ".", "units", "if", "dot", ".", "shape", "==", "(", ")", ":", "...	24.526316	16.368421
async def _send_report(self, status): """ Call all subscribed coroutines in _notify whenever a status update occurs. This method is a coroutine """ if len(self._notify) > 0: # Each client gets its own copy of the dict. asyncio.gather(*[coro(dict(s...	[ "async", "def", "_send_report", "(", "self", ",", "status", ")", ":", "if", "len", "(", "self", ".", "_notify", ")", ">", "0", ":", "# Each client gets its own copy of the dict.", "asyncio", ".", "gather", "(", "*", "[", "coro", "(", "dict", "(", "status",...	35.181818	13.909091
def neutralize_variables(self, tax_benefit_system): """ Neutralizing input variables not in input dataframe and keep some crucial variables """ for variable_name, variable in tax_benefit_system.variables.items(): if variable.formulas: continue if s...	[ "def", "neutralize_variables", "(", "self", ",", "tax_benefit_system", ")", ":", "for", "variable_name", ",", "variable", "in", "tax_benefit_system", ".", "variables", ".", "items", "(", ")", ":", "if", "variable", ".", "formulas", ":", "continue", "if", "self...	49.933333	28.6
def collect_analysis(self): ''' :return: a dictionary which is used to get the serialized analyzer definition from the analyzer class. ''' analysis = {} for field in self.fields.values(): for analyzer_name in ('analyzer', 'index_analyzer', 'search_analyzer'): ...	[ "def", "collect_analysis", "(", "self", ")", ":", "analysis", "=", "{", "}", "for", "field", "in", "self", ".", "fields", ".", "values", "(", ")", ":", "for", "analyzer_name", "in", "(", "'analyzer'", ",", "'index_analyzer'", ",", "'search_analyzer'", ")",...	34.173913	24.347826
def padded_cross_entropy(logits, labels, label_smoothing, weights_fn=weights_nonzero, reduce_sum=True, cutoff=0.0, gaussian=False): """Compute cross-entropy assuming 0s...	[ "def", "padded_cross_entropy", "(", "logits", ",", "labels", ",", "label_smoothing", ",", "weights_fn", "=", "weights_nonzero", ",", "reduce_sum", "=", "True", ",", "cutoff", "=", "0.0", ",", "gaussian", "=", "False", ")", ":", "if", "isinstance", "(", "logi...	38.380952	16.253968
def retrieve_assignment_overridden_dates_for_quizzes(self, course_id, quiz_assignment_overrides_0_quiz_ids=None): """ Retrieve assignment-overridden dates for quizzes. Retrieve the actual due-at, unlock-at, and available-at dates for quizzes based on the assignment overrides active...	[ "def", "retrieve_assignment_overridden_dates_for_quizzes", "(", "self", ",", "course_id", ",", "quiz_assignment_overrides_0_quiz_ids", "=", "None", ")", ":", "path", "=", "{", "}", "data", "=", "{", "}", "params", "=", "{", "}", "# REQUIRED - PATH - course_id\r", "\...	52.217391	32.869565
def fit(self, X, y=None, **fit_params): """Fits the inverse covariance model according to the given training data and parameters. Parameters ----------- X : 2D ndarray, shape (n_features, n_features) Input data. Returns ------- self "...	[ "def", "fit", "(", "self", ",", "X", ",", "y", "=", "None", ",", "", "", "fit_params", ")", ":", "# quic-specific outputs", "self", ".", "opt_", "=", "None", "self", ".", "cputime_", "=", "None", "self", ".", "iters_", "=", "None", "self", ".", "...	33.188406	18.043478
def _cached_results(self, start_time, end_time): """ Retrieves cached results for any bucket that has a single cache entry. If a bucket has two cache entries, there is a chance that two different writers previously computed and cached a result since Kronos has no transaction semantics. While it mi...	[ "def", "_cached_results", "(", "self", ",", "start_time", ",", "end_time", ")", ":", "cached_buckets", "=", "self", ".", "_bucket_events", "(", "self", ".", "_client", ".", "get", "(", "self", ".", "_scratch_stream", ",", "start_time", ",", "end_time", ",", ...	48	16.285714
def jsontype(self, name, path=Path.rootPath()): """ Gets the type of the JSON value under ``path`` from key ``name`` """ return self.execute_command('JSON.TYPE', name, str_path(path))	[ "def", "jsontype", "(", "self", ",", "name", ",", "path", "=", "Path", ".", "rootPath", "(", ")", ")", ":", "return", "self", ".", "execute_command", "(", "'JSON.TYPE'", ",", "name", ",", "str_path", "(", "path", ")", ")" ]	42.2	13.8
def tmpl_first(text, count=1, skip=0, sep=u'; ', join_str=u'; '): """ * synopsis: ``%first{text}`` or ``%first{text,count,skip}`` or \ ``%first{text,count,skip,sep,join}`` * description: Returns the first item, separated by ; . You can use \ %first{text,count,skip}, where...	[ "def", "tmpl_first", "(", "text", ",", "count", "=", "1", ",", "skip", "=", "0", ",", "sep", "=", "u'; '", ",", "join_str", "=", "u'; '", ")", ":", "skip", "=", "int", "(", "skip", ")", "count", "=", "skip", "+", "int", "(", "count", ")", "retu...	51.052632	21.684211
def get_object(cls, api_token, domain_name): """ Class method that will return a Domain object by ID. """ domain = cls(token=api_token, name=domain_name) domain.load() return domain	[ "def", "get_object", "(", "cls", ",", "api_token", ",", "domain_name", ")", ":", "domain", "=", "cls", "(", "token", "=", "api_token", ",", "name", "=", "domain_name", ")", "domain", ".", "load", "(", ")", "return", "domain" ]	32.428571	11.571429
def update(self, id, body): """Modifies a connection. Args: id: Id of the connection. body (dict): Specifies which fields are to be modified, and to what values. See: https://auth0.com/docs/api/management/v2#!/Connections/patch_connections_by_id ...	[ "def", "update", "(", "self", ",", "id", ",", "body", ")", ":", "return", "self", ".", "client", ".", "patch", "(", "self", ".", "_url", "(", "id", ")", ",", "data", "=", "body", ")" ]	28.8	24.133333
def create_window(width, height, title, monitor, share): """ Creates a window and its associated context. Wrapper for: GLFWwindow* glfwCreateWindow(int width, int height, const char* title, GLFWmonitor* monitor, GLFWwindow* share); """ return _glfw.glfwCreateWindow(width, height, _to_char_p...	[ "def", "create_window", "(", "width", ",", "height", ",", "title", ",", "monitor", ",", "share", ")", ":", "return", "_glfw", ".", "glfwCreateWindow", "(", "width", ",", "height", ",", "_to_char_p", "(", "title", ")", ",", "monitor", ",", "share", ")" ]	41.111111	22.666667
def _iter_info(self, niter, level=logging.INFO): """ Log iteration number and mismatch Parameters ---------- level logging level Returns ------- None """ max_mis = self.iter_mis[niter - 1] msg = ' Iter {:<d}. max misma...	[ "def", "_iter_info", "(", "self", ",", "niter", ",", "level", "=", "logging", ".", "INFO", ")", ":", "max_mis", "=", "self", ".", "iter_mis", "[", "niter", "-", "1", "]", "msg", "=", "' Iter {:<d}. max mismatch = {:8.7f}'", ".", "format", "(", "niter", ...	24.533333	17.733333
def get_local_variable_or_declare_one(self, raw_name, type=None): ''' This function will first check if raw_name has been used to create some variables. If yes, the latest one named in self.variable_name_mapping[raw_name] will be returned. Otherwise, a new variable will be created and th...	[ "def", "get_local_variable_or_declare_one", "(", "self", ",", "raw_name", ",", "type", "=", "None", ")", ":", "onnx_name", "=", "self", ".", "get_onnx_variable_name", "(", "raw_name", ")", "if", "onnx_name", "in", "self", ".", "variables", ":", "return", "self...	49.588235	26.058824
def get_group_members(self, group_id, max_results=None, paging_token=None): """GetGroupMembers. [Preview API] Get direct members of a Group. :param str group_id: Id of the Group. :param int max_results: Maximum number of results to retrieve. :param str paging_token: Paging Token ...	[ "def", "get_group_members", "(", "self", ",", "group_id", ",", "max_results", "=", "None", ",", "paging_token", "=", "None", ")", ":", "route_values", "=", "{", "}", "if", "group_id", "is", "not", "None", ":", "route_values", "[", "'groupId'", "]", "=", ...	63.5	29.318182
def normalize(W, copy=True): ''' Normalizes an input weighted connection matrix. If copy is not set, this function will modify W in place. Parameters ---------- W : np.ndarray weighted connectivity matrix copy : bool if True, returns a copy of the matrix. Otherwise, modif...	[ "def", "normalize", "(", "W", ",", "copy", "=", "True", ")", ":", "if", "copy", ":", "W", "=", "W", ".", "copy", "(", ")", "W", "/=", "np", ".", "max", "(", "np", ".", "abs", "(", "W", ")", ")", "return", "W" ]	23.454545	23.272727
def preprocess(self, data): """ Processes popcorn JSON and builds a sane data model out of it @param data : The popcorn editor project json blob """ print 'Beginning pre-process...' for url, video in data['media'][0]['clipData'].iteritems(): print 'Downloadin...	[ "def", "preprocess", "(", "self", ",", "data", ")", ":", "print", "'Beginning pre-process...'", "for", "url", ",", "video", "in", "data", "[", "'media'", "]", "[", "0", "]", "[", "'clipData'", "]", ".", "iteritems", "(", ")", ":", "print", "'Downloading ...	34.691176	18.397059
def filter_set(self, name): """ Adds filters from a particular global :class:`FilterSet`. Args: name (str): The name of the set whose filters should be added. """ filter_set = filter_sets[name] for name, filter in iter(filter_set.filters.items()): ...	[ "def", "filter_set", "(", "self", ",", "name", ")", ":", "filter_set", "=", "filter_sets", "[", "name", "]", "for", "name", ",", "filter", "in", "iter", "(", "filter_set", ".", "filters", ".", "items", "(", ")", ")", ":", "self", ".", "filters", "[",...	32.583333	17.916667
def check_dependencies(): """Check external dependecies Return a tuple with the available generators. """ available = [] try: shell('ebook-convert') available.append('calibre') except OSError: pass try: shell('pandoc --help') available.append('pandoc')...	[ "def", "check_dependencies", "(", ")", ":", "available", "=", "[", "]", "try", ":", "shell", "(", "'ebook-convert'", ")", "available", ".", "append", "(", "'calibre'", ")", "except", "OSError", ":", "pass", "try", ":", "shell", "(", "'pandoc --help'", ")",...	25.421053	16.684211
def alternative_parser(self, family_file): """ Parse alternative formatted family info This parses a information with more than six columns. For alternative information header comlumn must exist and each row must have the same amount of columns as the header. ...	[ "def", "alternative_parser", "(", "self", ",", "family_file", ")", ":", "alternative_header", "=", "None", "for", "line", "in", "family_file", ":", "if", "line", ".", "startswith", "(", "'#'", ")", ":", "alternative_header", "=", "line", "[", "1", ":", "]"...	53.07619	23.666667
def save(self, path, binary=False): """Save a set of constructs into the CLIPS data base. If binary is True, the constructs will be saved in binary format. The Python equivalent of the CLIPS load command. """ if binary: ret = lib.EnvBsave(self._env, path.encode()) ...	[ "def", "save", "(", "self", ",", "path", ",", "binary", "=", "False", ")", ":", "if", "binary", ":", "ret", "=", "lib", ".", "EnvBsave", "(", "self", ".", "_env", ",", "path", ".", "encode", "(", ")", ")", "else", ":", "ret", "=", "lib", ".", ...	31.214286	19.642857
def polite_string(a_string): """Returns a "proper" string that should work in both Py3/Py2""" if is_py3() and hasattr(a_string, 'decode'): try: return a_string.decode('utf-8') except UnicodeDecodeError: return a_string return a_string	[ "def", "polite_string", "(", "a_string", ")", ":", "if", "is_py3", "(", ")", "and", "hasattr", "(", "a_string", ",", "'decode'", ")", ":", "try", ":", "return", "a_string", ".", "decode", "(", "'utf-8'", ")", "except", "UnicodeDecodeError", ":", "return", ...	31	14.555556
def _set_queues_interface(self, v, load=False): """ Setter method for queues_interface, mapped from YANG variable /openflow_state/queues_interface (container) If this variable is read-only (config: false) in the source YANG file, then _set_queues_interface is considered as a private method. Backends...	[ "def", "_set_queues_interface", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ",", ...	81.590909	38.045455
def parse_value(self, tup_tree): """ Parse a VALUE element and return its text content as a unicode string. Whitespace is preserved. The conversion of the text representation of the value to a CIM data type object requires CIM type information which is not available on the ...	[ "def", "parse_value", "(", "self", ",", "tup_tree", ")", ":", "self", ".", "check_node", "(", "tup_tree", ",", "'VALUE'", ",", "(", ")", ",", "(", ")", ",", "(", ")", ",", "allow_pcdata", "=", "True", ")", "return", "self", ".", "pcdata", "(", "tup...	33.111111	24.111111
async def begin_twophase(self, xid=None): """Begin a two-phase or XA transaction and return a transaction handle. The returned object is an instance of TwoPhaseTransaction, which in addition to the methods provided by Transaction, also provides a TwoPhaseTransaction.prep...	[ "async", "def", "begin_twophase", "(", "self", ",", "xid", "=", "None", ")", ":", "if", "self", ".", "_transaction", "is", "not", "None", ":", "raise", "exc", ".", "InvalidRequestError", "(", "\"Cannot start a two phase transaction when a transaction \"", "\"is alre...	38.090909	13.818182
def t_bin_ZERO(t): r'[^01]' t.lexer.begin('INITIAL') t.type = 'NUMBER' t.value = 0 t.lexer.lexpos -= 1 return t	[ "def", "t_bin_ZERO", "(", "t", ")", ":", "t", ".", "lexer", ".", "begin", "(", "'INITIAL'", ")", "t", ".", "type", "=", "'NUMBER'", "t", ".", "value", "=", "0", "t", ".", "lexer", ".", "lexpos", "-=", "1", "return", "t" ]	18.428571	21.571429
def make_pre_authed_request(self, env, method=None, path=None, body=None, headers=None): """Nearly the same as swift.common.wsgi.make_pre_authed_request except that this also always sets the 'swift.source' and user agent. Newer Swift code will support swi...	[ "def", "make_pre_authed_request", "(", "self", ",", "env", ",", "method", "=", "None", ",", "path", "=", "None", ",", "body", "=", "None", ",", "headers", "=", "None", ")", ":", "if", "self", ".", "default_storage_policy", ":", "sp", "=", "self", ".", ...	43	18.304348
async def _workaround_1695335(self, delta, old, new, model): """ This is a (hacky) temporary work around for a bug in Juju where the instance status and agent version fields don't get updated properly by the AllWatcher. Deltas never contain a value for `data['agent-status']['ver...	[ "async", "def", "_workaround_1695335", "(", "self", ",", "delta", ",", "old", ",", "new", ",", "model", ")", ":", "if", "delta", ".", "data", ".", "get", "(", "'synthetic'", ",", "False", ")", ":", "# prevent infinite loops re-processing already processed deltas...	43.761194	24.80597
def find(self, header): """Return the index of the header in the set or return -1 if not found. :param header: the header to be looked up. """ header = header.lower() for idx, item in enumerate(self._headers): if item.lower() == header: return idx ...	[ "def", "find", "(", "self", ",", "header", ")", ":", "header", "=", "header", ".", "lower", "(", ")", "for", "idx", ",", "item", "in", "enumerate", "(", "self", ".", "_headers", ")", ":", "if", "item", ".", "lower", "(", ")", "==", "header", ":",...	32.5	12.5
def _download_file(uri, bulk_api): """Download the bulk API result file for a single batch""" resp = requests.get(uri, headers=bulk_api.headers(), stream=True) with tempfile.TemporaryFile("w+b") as f: for chunk in resp.iter_content(chunk_size=None): f.write(chunk) f.seek(0) ...	[ "def", "_download_file", "(", "uri", ",", "bulk_api", ")", ":", "resp", "=", "requests", ".", "get", "(", "uri", ",", "headers", "=", "bulk_api", ".", "headers", "(", ")", ",", "stream", "=", "True", ")", "with", "tempfile", ".", "TemporaryFile", "(", ...	40.375	14.625
def edge_statistics(docgraph): """print basic statistics about an edge, e.g. layer/attribute counts""" print "Edge statistics\n===============" layer_counts = Counter() attrib_counts = Counter() source_counts = Counter() target_counts = Counter() for source, target, edge_attrs in docgraph.ed...	[ "def", "edge_statistics", "(", "docgraph", ")", ":", "print", "\"Edge statistics\\n===============\"", "layer_counts", "=", "Counter", "(", ")", "attrib_counts", "=", "Counter", "(", ")", "source_counts", "=", "Counter", "(", ")", "target_counts", "=", "Counter", ...	35.875	9
def dot(data, color=None, point_size=2, f_tooltip=None): """Create a dot density map :param data: data access object :param color: color :param point_size: point size :param f_tooltip: function to return a tooltip string for a point """ from geoplotlib.layers import DotDensityLayer _glo...	[ "def", "dot", "(", "data", ",", "color", "=", "None", ",", "point_size", "=", "2", ",", "f_tooltip", "=", "None", ")", ":", "from", "geoplotlib", ".", "layers", "import", "DotDensityLayer", "_global_config", ".", "layers", ".", "append", "(", "DotDensityLa...	41.5	19.5
def vector_check(vector): """ Check input vector items type. :param vector: input vector :type vector : list :return: bool """ for i in vector: if isinstance(i, int) is False: return False if i < 0: return False return True	[ "def", "vector_check", "(", "vector", ")", ":", "for", "i", "in", "vector", ":", "if", "isinstance", "(", "i", ",", "int", ")", "is", "False", ":", "return", "False", "if", "i", "<", "0", ":", "return", "False", "return", "True" ]	20.214286	15.071429
def auth(username, password): ''' Authenticate against yubico server ''' _cred = __get_yubico_users(username) client = Yubico(_cred['id'], _cred['key']) try: return client.verify(password) except yubico_exceptions.StatusCodeError as e: log.info('Unable to verify YubiKey `%s...	[ "def", "auth", "(", "username", ",", "password", ")", ":", "_cred", "=", "__get_yubico_users", "(", "username", ")", "client", "=", "Yubico", "(", "_cred", "[", "'id'", "]", ",", "_cred", "[", "'key'", "]", ")", "try", ":", "return", "client", ".", "...	25.769231	18.538462
def get_sitetree(self, alias): """Gets site tree items from the given site tree. Caches result to dictionary. Returns (tree alias, tree items) tuple. :param str\|unicode alias: :rtype: tuple """ cache_ = self.cache get_cache_entry = cache_.get_entry ...	[ "def", "get_sitetree", "(", "self", ",", "alias", ")", ":", "cache_", "=", "self", ".", "cache", "get_cache_entry", "=", "cache_", ".", "get_entry", "set_cache_entry", "=", "cache_", ".", "set_entry", "caching_required", "=", "False", "if", "not", "self", "....	35.682353	19.141176
def split_pem(s): """ Split PEM objects. Useful to process concatenated certificates. """ pem_strings = [] while s != b"": start_idx = s.find(b"-----BEGIN") if start_idx == -1: break end_idx = s.find(b"-----END") end_idx = s.find(b"\n", end_idx) + 1 ...	[ "def", "split_pem", "(", "s", ")", ":", "pem_strings", "=", "[", "]", "while", "s", "!=", "b\"\"", ":", "start_idx", "=", "s", ".", "find", "(", "b\"-----BEGIN\"", ")", "if", "start_idx", "==", "-", "1", ":", "break", "end_idx", "=", "s", ".", "fin...	28.285714	12.714286
def type(self): '''Return 'suite' or 'resource' or None This will return 'suite' if a testcase table is found; It will return 'resource' if at least one robot table is found. If no tables are found it will return None ''' robot_tables = [table for table in self.tables i...	[ "def", "type", "(", "self", ")", ":", "robot_tables", "=", "[", "table", "for", "table", "in", "self", ".", "tables", "if", "not", "isinstance", "(", "table", ",", "UnknownTable", ")", "]", "if", "len", "(", "robot_tables", ")", "==", "0", ":", "retu...	31.941176	23.588235
def _get_real_ip(self): """ Get IP from request. :param request: A usual request object :type request: HttpRequest :return: ipv4 string or None """ try: # Trying to work with most common proxy headers real_ip = self.request.META['HTTP_X_FO...	[ "def", "_get_real_ip", "(", "self", ")", ":", "try", ":", "# Trying to work with most common proxy headers", "real_ip", "=", "self", ".", "request", ".", "META", "[", "'HTTP_X_FORWARDED_FOR'", "]", "return", "real_ip", ".", "split", "(", "','", ")", "[", "0", ...	30	13.529412
def setError(self, msg=None, title=None): """ Shows and error message """ if msg is not None: self.messageLabel.setText(msg) if title is not None: self.titleLabel.setText(title)	[ "def", "setError", "(", "self", ",", "msg", "=", "None", ",", "title", "=", "None", ")", ":", "if", "msg", "is", "not", "None", ":", "self", ".", "messageLabel", ".", "setText", "(", "msg", ")", "if", "title", "is", "not", "None", ":", "self", "....	28.375	8.625
def _load_results(self, container_id): """ load results from recent build :return: BuildResults """ if self.temp_dir: dt = DockerTasker() # FIXME: load results only when requested # results_path = os.path.join(self.temp_dir, RESULTS_JSON) ...	[ "def", "_load_results", "(", "self", ",", "container_id", ")", ":", "if", "self", ".", "temp_dir", ":", "dt", "=", "DockerTasker", "(", ")", "# FIXME: load results only when requested", "# results_path = os.path.join(self.temp_dir, RESULTS_JSON)", "# df_path = os.path.join(se...	45.083333	17.416667
def is_empty(self): """Asserts that val is empty.""" if len(self.val) != 0: if isinstance(self.val, str_types): self._err('Expected <%s> to be empty string, but was not.' % self.val) else: self._err('Expected <%s> to be empty, but was not.' % self....	[ "def", "is_empty", "(", "self", ")", ":", "if", "len", "(", "self", ".", "val", ")", "!=", "0", ":", "if", "isinstance", "(", "self", ".", "val", ",", "str_types", ")", ":", "self", ".", "_err", "(", "'Expected <%s> to be empty string, but was not.'", "%...	42.125	20.875
def merge_groups(self, indices): """Extend the lists within the DICOM groups dictionary. The indices will indicate which list have to be extended by which other list. Parameters ---------- indices: list or tuple of 2 iterables of int, bot having the same len ...	[ "def", "merge_groups", "(", "self", ",", "indices", ")", ":", "try", ":", "merged", "=", "merge_dict_of_lists", "(", "self", ".", "dicom_groups", ",", "indices", ",", "pop_later", "=", "True", ",", "copy", "=", "True", ")", "self", ".", "dicom_groups", "...	46.3	22.3
def _save_metadata(self): """ Write this prefix metadata to disk Returns: None """ with open(self.paths.metadata(), 'w') as metadata_fd: utils.json_dump(self.metadata, metadata_fd)	[ "def", "_save_metadata", "(", "self", ")", ":", "with", "open", "(", "self", ".", "paths", ".", "metadata", "(", ")", ",", "'w'", ")", "as", "metadata_fd", ":", "utils", ".", "json_dump", "(", "self", ".", "metadata", ",", "metadata_fd", ")" ]	26.333333	15.666667
def get_graph_csv(): """ Allows the user to download a graph's data as a CSV file. :return: show a dialog box that allows the user to download the CSV file. """ assert request.method == "POST", "POST request expected received {}".format(request.method) if request.method == "POST": try: ...	[ "def", "get_graph_csv", "(", ")", ":", "assert", "request", ".", "method", "==", "\"POST\"", ",", "\"POST request expected received {}\"", ".", "format", "(", "request", ".", "method", ")", "if", "request", ".", "method", "==", "\"POST\"", ":", "try", ":", "...	48.142857	24.571429
def addProfile(self, profile): """ Adds the inputed profile to the system. :param profile \| <XViewProfile> """ if ( profile in self._profiles ): return self._profiles.append(profile) self._profileCombo.blockSignals(True) ...	[ "def", "addProfile", "(", "self", ",", "profile", ")", ":", "if", "(", "profile", "in", "self", ".", "_profiles", ")", ":", "return", "self", ".", "_profiles", ".", "append", "(", "profile", ")", "self", ".", "_profileCombo", ".", "blockSignals", "(", ...	33.5	11.642857
def add_archive(self, src_file, remove_final=False): """ Adds the contents of another tarfile to the build. It will be repackaged during context generation, and added to the root level of the file system. Therefore, it is not required that tar (or compression utilities) is present in the...	[ "def", "add_archive", "(", "self", ",", "src_file", ",", "remove_final", "=", "False", ")", ":", "with", "tarfile", ".", "open", "(", "src_file", ",", "'r'", ")", "as", "tf", ":", "member_names", "=", "[", "member", ".", "name", "for", "member", "in", ...	54.2	25
def get_zorder(self, overlay, key, el): """ Computes the z-order of element in the NdOverlay taking into account possible batching of elements. """ spec = util.get_overlay_spec(overlay, key, el) return self.ordering.index(spec)	[ "def", "get_zorder", "(", "self", ",", "overlay", ",", "key", ",", "el", ")", ":", "spec", "=", "util", ".", "get_overlay_spec", "(", "overlay", ",", "key", ",", "el", ")", "return", "self", ".", "ordering", ".", "index", "(", "spec", ")" ]	38.428571	7
def check_field_exists(self, field_name): """Implements field exists check for debugging purposes. :param field_name: :return: """ if not settings.DEBUG: return try: self.lookup_opts.get_field(field_name) except FieldDoesNotExist as e: ...	[ "def", "check_field_exists", "(", "self", ",", "field_name", ")", ":", "if", "not", "settings", ".", "DEBUG", ":", "return", "try", ":", "self", ".", "lookup_opts", ".", "get_field", "(", "field_name", ")", "except", "FieldDoesNotExist", "as", "e", ":", "r...	25.357143	17.142857
def configure(level=logging.WARNING, handler=None, formatter=None): """Configure Logr @param handler: Logger message handler @type handler: logging.Handler or None @param formatter: Logger message Formatter @type formatter: logging.Formatter or None """ if forma...	[ "def", "configure", "(", "level", "=", "logging", ".", "WARNING", ",", "handler", "=", "None", ",", "formatter", "=", "None", ")", ":", "if", "formatter", "is", "None", ":", "formatter", "=", "LogrFormatter", "(", ")", "if", "handler", "is", "None", ":...	29.722222	14.944444
def clean_lines(string_list, remove_empty_lines=True): """ Strips whitespace, carriage returns and empty lines from a list of strings. Args: string_list: List of strings remove_empty_lines: Set to True to skip lines which are empty after stripping. Returns: List of ...	[ "def", "clean_lines", "(", "string_list", ",", "remove_empty_lines", "=", "True", ")", ":", "for", "s", "in", "string_list", ":", "clean_s", "=", "s", "if", "'#'", "in", "s", ":", "ind", "=", "s", ".", "index", "(", "'#'", ")", "clean_s", "=", "s", ...	27.857143	19.571429
def _get_file(self, share_name, directory_name, file_name, start_range=None, end_range=None, range_get_content_md5=None, timeout=None): ''' Downloads a file's content, metadata, and properties. You can specify a range if you don't need to download the file in it...	[ "def", "_get_file", "(", "self", ",", "share_name", ",", "directory_name", ",", "file_name", ",", "start_range", "=", "None", ",", "end_range", "=", "None", ",", "range_get_content_md5", "=", "None", ",", "timeout", "=", "None", ")", ":", "_validate_not_none",...	48.037736	20.45283
def Receive(self, replytype, kw): '''Parse message, create Python object. KeyWord data: faults -- list of WSDL operation.fault typecodes wsaction -- If using WS-Address, must specify Action value we expect to receive. ''' self.ReceiveSOAP(kw...	[ "def", "Receive", "(", "self", ",", "replytype", ",", "", "", "kw", ")", ":", "self", ".", "ReceiveSOAP", "(", "", "", "kw", ")", "if", "self", ".", "ps", ".", "IsAFault", "(", ")", ":", "msg", "=", "FaultFromFaultMessage", "(", "self", ".", ...	32.52381	17.857143
def _deregister(self, session): """ Deregister a session. """ if session in self: self._sessions.pop(self._get_session_key(session), None)	[ "def", "_deregister", "(", "self", ",", "session", ")", ":", "if", "session", "in", "self", ":", "self", ".", "_sessions", ".", "pop", "(", "self", ".", "_get_session_key", "(", "session", ")", ",", "None", ")" ]	29.666667	10
def _CreateDynamicDisplayAdSettings(media_service, opener): """Creates settings for dynamic display ad. Args: media_service: a SudsServiceProxy instance for AdWords's MediaService. opener: an OpenerDirector instance. Returns: The dynamic display ad settings. """ image = _CreateImage(media_servic...	[ "def", "_CreateDynamicDisplayAdSettings", "(", "media_service", ",", "opener", ")", ":", "image", "=", "_CreateImage", "(", "media_service", ",", "opener", ",", "'https://goo.gl/dEvQeF'", ")", "logo", "=", "{", "'type'", ":", "'IMAGE'", ",", "'mediaId'", ":", "i...	24.115385	21.115385
def samtools_index(self, bam_file): """Index a bam file.""" cmd = self.tools.samtools + " index {0}".format(bam_file) return cmd	[ "def", "samtools_index", "(", "self", ",", "bam_file", ")", ":", "cmd", "=", "self", ".", "tools", ".", "samtools", "+", "\" index {0}\"", ".", "format", "(", "bam_file", ")", "return", "cmd" ]	37.25	13
def sample_shape(self): """Sample shape of random variable as a `TensorShape`.""" if isinstance(self._sample_shape, tf.Tensor): return tf.TensorShape(tf.get_static_value(self._sample_shape)) return tf.TensorShape(self._sample_shape)	[ "def", "sample_shape", "(", "self", ")", ":", "if", "isinstance", "(", "self", ".", "_sample_shape", ",", "tf", ".", "Tensor", ")", ":", "return", "tf", ".", "TensorShape", "(", "tf", ".", "get_static_value", "(", "self", ".", "_sample_shape", ")", ")", ...	49.2	11.8
def get_sgburst_waveform(template=None, **kwargs): """Return the plus and cross polarizations of a time domain sine-Gaussian burst waveform. Parameters ---------- template: object An object that has attached properties. This can be used to subsitute for keyword arguments. A common e...	[ "def", "get_sgburst_waveform", "(", "template", "=", "None", ",", "", "", "kwargs", ")", ":", "input_params", "=", "props_sgburst", "(", "template", ",", "", "", "kwargs", ")", "for", "arg", "in", "sgburst_required_args", ":", "if", "arg", "not", "in",...	31.675676	19.459459
def _call_retry(self, force_retry): """Call request and retry up to max_attempts times (or none if self.max_attempts=1)""" last_exception = None for i in range(self.max_attempts): try: log.info("Calling %s %s" % (self.method, self.url)) response = self...	[ "def", "_call_retry", "(", "self", ",", "force_retry", ")", ":", "last_exception", "=", "None", "for", "i", "in", "range", "(", "self", ".", "max_attempts", ")", ":", "try", ":", "log", ".", "info", "(", "\"Calling %s %s\"", "%", "(", "self", ".", "met...	42.84375	21.125
def http_redirect_message(message, location, relay_state="", typ="SAMLRequest", sigalg='', signer=None, **kwargs): """The HTTP Redirect binding defines a mechanism by which SAML protocol messages can be transmitted within URL parameters. Messages are encoded for use with this bindi...	[ "def", "http_redirect_message", "(", "message", ",", "location", ",", "relay_state", "=", "\"\"", ",", "typ", "=", "\"SAMLRequest\"", ",", "sigalg", "=", "''", ",", "signer", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "not", "isinstance", "(",...	37.018182	20.909091
def get_providing_power_source_type(self): """ Returns GetSystemPowerStatus().ACLineStatus @raise: WindowsError if any underlying error occures. """ power_status = SYSTEM_POWER_STATUS() if not GetSystemPowerStatus(pointer(power_status)): raise WinError() ...	[ "def", "get_providing_power_source_type", "(", "self", ")", ":", "power_status", "=", "SYSTEM_POWER_STATUS", "(", ")", "if", "not", "GetSystemPowerStatus", "(", "pointer", "(", "power_status", ")", ")", ":", "raise", "WinError", "(", ")", "return", "POWER_TYPE_MAP...	36.3	12.5
def reset_status(self): """Reset progress bars""" for item in self.items: item.isProcessing = False item.currentProgress = 0	[ "def", "reset_status", "(", "self", ")", ":", "for", "item", "in", "self", ".", "items", ":", "item", ".", "isProcessing", "=", "False", "item", ".", "currentProgress", "=", "0" ]	32	6.6
def add_residue_from_geo(structure, geo): '''Adds a residue to chain A model 0 of the given structure, and returns the new structure. The residue to be added is determined by the geometry object given as second argument. This function is a helper function and should not normally be called direc...	[ "def", "add_residue_from_geo", "(", "structure", ",", "geo", ")", ":", "resRef", "=", "getReferenceResidue", "(", "structure", ")", "AA", "=", "geo", ".", "residue_name", "segID", "=", "resRef", ".", "get_id", "(", ")", "[", "1", "]", "segID", "+=", "1",...	35.141304	20.423913
def _parse_genotype(self, vcf_fields): """Parse genotype from VCF line data""" format_col = vcf_fields[8].split(':') genome_data = vcf_fields[9].split(':') try: gt_idx = format_col.index('GT') except ValueError: return [] return [int(x) for x in re...	[ "def", "_parse_genotype", "(", "self", ",", "vcf_fields", ")", ":", "format_col", "=", "vcf_fields", "[", "8", "]", ".", "split", "(", "':'", ")", "genome_data", "=", "vcf_fields", "[", "9", "]", ".", "split", "(", "':'", ")", "try", ":", "gt_idx", "...	37.7	12.6
def getScriptLocation(): """Helper function to get the location of a Python file.""" location = os.path.abspath("./") if __file__.rfind("/") != -1: location = __file__[:__file__.rfind("/")] return location	[ "def", "getScriptLocation", "(", ")", ":", "location", "=", "os", ".", "path", ".", "abspath", "(", "\"./\"", ")", "if", "__file__", ".", "rfind", "(", "\"/\"", ")", "!=", "-", "1", ":", "location", "=", "__file__", "[", ":", "__file__", ".", "rfind"...	34.333333	10
def spi_configure(self, polarity, phase, bitorder): """Configure the SPI interface.""" ret = api.py_aa_spi_configure(self.handle, polarity, phase, bitorder) _raise_error_if_negative(ret)	[ "def", "spi_configure", "(", "self", ",", "polarity", ",", "phase", ",", "bitorder", ")", ":", "ret", "=", "api", ".", "py_aa_spi_configure", "(", "self", ".", "handle", ",", "polarity", ",", "phase", ",", "bitorder", ")", "_raise_error_if_negative", "(", ...	51.75	12.75
def p_file_contrib_1(self, p): """file_contrib : FILE_CONTRIB LINE""" try: if six.PY2: value = p[2].decode(encoding='utf-8') else: value = p[2] self.builder.add_file_contribution(self.document, value) except OrderError: ...	[ "def", "p_file_contrib_1", "(", "self", ",", "p", ")", ":", "try", ":", "if", "six", ".", "PY2", ":", "value", "=", "p", "[", "2", "]", ".", "decode", "(", "encoding", "=", "'utf-8'", ")", "else", ":", "value", "=", "p", "[", "2", "]", "self", ...	37.5	17.7
def doublewrap(f): ''' a decorator decorator, allowing the decorator to be used as: @decorator(with, arguments, and=kwargs) or @decorator Ref: http://stackoverflow.com/questions/653368/how-to-create-a-python-decorator-that-can-be-used-either-with-or-without-paramet ''' @functools.wraps(f...	[ "def", "doublewrap", "(", "f", ")", ":", "@", "functools", ".", "wraps", "(", "f", ")", "def", "new_dec", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "len", "(", "args", ")", "==", "1", "and", "len", "(", "kwargs", ")", "==", "...	33.611111	24.722222
def get_differing_atom_residue_ids(self, pdb_name, pdb_list = []): '''Returns a list of residues in pdb_name which differ from the pdbs corresponding to the names in pdb_list.''' # partition_by_sequence is a map pdb_name -> Int where two pdb names in the same equivalence class map to the same integer (...	[ "def", "get_differing_atom_residue_ids", "(", "self", ",", "pdb_name", ",", "pdb_list", "=", "[", "]", ")", ":", "# partition_by_sequence is a map pdb_name -> Int where two pdb names in the same equivalence class map to the same integer (i.e. it is a partition)", "# representative_pdbs i...	58.162162	36.594595
def _add_additional_properties(position, properties_dict): """ Sets AdditionalProperties of the ProbModelXML. """ add_prop = etree.SubElement(position, 'AdditionalProperties') for key, value in properties_dict.items(): etree.SubElement(add_prop, 'Property', attrib={'n...	[ "def", "_add_additional_properties", "(", "position", ",", "properties_dict", ")", ":", "add_prop", "=", "etree", ".", "SubElement", "(", "position", ",", "'AdditionalProperties'", ")", "for", "key", ",", "value", "in", "properties_dict", ".", "items", "(", ")",...	48.714286	17
def inbox_folder(self): """ Shortcut to get Inbox Folder instance :rtype: mailbox.Folder """ return self.folder_constructor(parent=self, name='Inbox', folder_id=OutlookWellKnowFolderNames .INBOX.value)	[ "def", "inbox_folder", "(", "self", ")", ":", "return", "self", ".", "folder_constructor", "(", "parent", "=", "self", ",", "name", "=", "'Inbox'", ",", "folder_id", "=", "OutlookWellKnowFolderNames", ".", "INBOX", ".", "value", ")" ]	38.125	17.375
def ssh(container, cmd='', user='root', password='root'): ''' SSH into a running container, using the host as a jump host. This requires the container to have a running sshd process. Args: * container: Container name or ID * cmd='': Command to run in the container * user='root':...	[ "def", "ssh", "(", "container", ",", "cmd", "=", "''", ",", "user", "=", "'root'", ",", "password", "=", "'root'", ")", ":", "ip", "=", "get_ip", "(", "container", ")", "ssh_cmd", "=", "'sshpass -p \\'%s\\' ssh -A -t -o StrictHostKeyChecking=no \\'%s\\'@%s'", "%...	42.266667	23.2
def monitor(args): """ file monitor mode """ filename = args.get('MDFILE') if not filename: print col('Need file argument', 2) raise SystemExit last_err = '' last_stat = 0 while True: if not os.path.exists(filename): last_err = 'File %s not found. Will continu...	[ "def", "monitor", "(", "args", ")", ":", "filename", "=", "args", ".", "get", "(", "'MDFILE'", ")", "if", "not", "filename", ":", "print", "col", "(", "'Need file argument'", ",", "2", ")", "raise", "SystemExit", "last_err", "=", "''", "last_stat", "=", ...	30.083333	13.125
def process_query_result(self, query_result, start_date, end_date): """Build the result using the query result.""" def build_buckets(agg, fields, bucket_result): """Build recursively result buckets.""" # Add metric results for current bucket for metric in self.metric_...	[ "def", "process_query_result", "(", "self", ",", "query_result", ",", "start_date", ",", "end_date", ")", ":", "def", "build_buckets", "(", "agg", ",", "fields", ",", "bucket_result", ")", ":", "\"\"\"Build recursively result buckets.\"\"\"", "# Add metric results for c...	44.666667	17.242424
def render_source(output_dir, package_specs, version): """ Render and output """ destination_filename = "%s/sbp_out.tex" % output_dir py_template = JENV.get_template(TEMPLATE_NAME) stable_msgs = [] unstable_msgs = [] prims = [] for p in sorted(package_specs, key=attrgetter('identifier')): pkg_name...	[ "def", "render_source", "(", "output_dir", ",", "package_specs", ",", "version", ")", ":", "destination_filename", "=", "\"%s/sbp_out.tex\"", "%", "output_dir", "py_template", "=", "JENV", ".", "get_template", "(", "TEMPLATE_NAME", ")", "stable_msgs", "=", "[", "]...	34.421053	14.596491
def MappingField(cls, child_key, default=NOTHING, required=True, repr=False, key=None): """ Create new mapping field on a model. :param cls: class (or name) of the model to be related in Sequence. :param child_key: key field on the child object to be used as the map key. :param def...	[ "def", "MappingField", "(", "cls", ",", "child_key", ",", "default", "=", "NOTHING", ",", "required", "=", "True", ",", "repr", "=", "False", ",", "key", "=", "None", ")", ":", "default", "=", "_init_fields", ".", "init_default", "(", "required", ",", ...	53.5	23.5
def timeAtThreshold(self,dateTime): ''' A convenience method for checking when a time is on the start/end boundary for this rule. ''' # Anything that's not at a day boundary is for sure not at a threshold. if not ( dateTime.hour == self.dayStarts and dateTime...	[ "def", "timeAtThreshold", "(", "self", ",", "dateTime", ")", ":", "# Anything that's not at a day boundary is for sure not at a threshold.", "if", "not", "(", "dateTime", ".", "hour", "==", "self", ".", "dayStarts", "and", "dateTime", ".", "minute", "==", "0", "and"...	36.636364	24.636364
def set_ports(self, port0 = 0x00, port1 = 0x00): 'Writes specified value to the pins defined as output by method. Writing to input pins has no effect.' self.bus.write_byte_data(self.address, self.CONTROL_PORT0, port0) self.bus.write_byte_data(self.address, self.CONTROL_PORT0, port1) retu...	[ "def", "set_ports", "(", "self", ",", "port0", "=", "0x00", ",", "port1", "=", "0x00", ")", ":", "self", ".", "bus", ".", "write_byte_data", "(", "self", ".", "address", ",", "self", ".", "CONTROL_PORT0", ",", "port0", ")", "self", ".", "bus", ".", ...	63.6	34
def _ostaunicode(src): # type: (str) -> bytes ''' Internal function to create an OSTA byte string from a source string. ''' if have_py_3: bytename = src else: bytename = src.decode('utf-8') # type: ignore try: enc = bytename.encode('latin-1') encbyte = b'\x0...	[ "def", "_ostaunicode", "(", "src", ")", ":", "# type: (str) -> bytes", "if", "have_py_3", ":", "bytename", "=", "src", "else", ":", "bytename", "=", "src", ".", "decode", "(", "'utf-8'", ")", "# type: ignore", "try", ":", "enc", "=", "bytename", ".", "enco...	26.647059	20.529412

def count_nonzero(data, mapper=None, blen=None, storage=None, create='array', **kwargs): """Count the number of non-zero elements.""" return reduce_axis(data, reducer=np.count_nonzero, block_reducer=np.add, mapper=mapper, blen=blen, storage=storage...

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56.833333

15.5

def _remove_strings(code) : """ Remove strings in code """ removed_string = "" is_string_now = None for i in range(0, len(code)-1) : append_this_turn = False if code[i] == "'" and (i == 0 or code[i-1] != '\\') : if is_string_now == "'" : is_string_now = None elif is_string_now == None ...

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22.166667

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def best_fit_likelihood(self): """ returns the log likelihood of the best fit model of the current state of this class :return: log likelihood, float """ kwargs_lens, kwargs_source, kwargs_lens_light, kwargs_ps, kwargs_cosmo = self.best_fit(bijective=False) param_class =...

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49.5

26.666667

def send_message(self, message, mention_id=None, mentions=[]): """ Send the specified message to twitter, with appropriate mentions, tokenized as necessary :param message: Message to be sent :param mention_id: In-reply-to mention_id (to link messages to a previous message) :param...

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50.44

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def dropAllCollections(self): """drops all public collections (graphs included) from the database""" for graph_name in self.graphs: self.graphs[graph_name].delete() for collection_name in self.collections: # Collections whose name starts with '_' are system collections ...

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47

11.444444

def _register_engine(self, uid): """New engine with ident `uid` became available.""" # head of the line: self.targets.insert(0,uid) self.loads.insert(0,0) # initialize sets self.completed[uid] = set() self.failed[uid] = set() self.pending[uid] = {} ...

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def get_parent_obj(obj): """ Gets the name of the object containing @obj and returns as a string @obj: any python object -> #str parent object name or None .. from redis_structures.debug import get_parent_obj get_parent_obj(get_parent_obj) # -> <module ...

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30.931818

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def unpack(cls, msg): """Construct an _OpReply from raw bytes.""" # PYTHON-945: ignore starting_from field. flags, cursor_id, _, number_returned = cls.UNPACK_FROM(msg) # Convert Python 3 memoryview to bytes. Note we should call # memoryview.tobytes() if we start using memoryview...

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47.555556

20.555556

def get_logger(name, file_name=None, stream=None, template=None, propagate=False, level=None): """Get a logger by name. """ logger = logging.getLogger(name) running_tests = ( 'test' in sys.argv # running with setup.py or sys.argv[0].endswith('py.test')) # running with py.test if ...

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28.764706

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async def listArtifacts(self, *args, **kwargs): """ Get Artifacts from Run Returns a list of artifacts and associated meta-data for a given run. As a task may have many artifacts paging may be necessary. If this end-point returns a `continuationToken`, you should call the end-p...

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38.5

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def next_question(self): """Returns the next `Question` in the questionnaire, or `None` if there are no questions left. Returns first question for whose key there is no answer and for which condition is satisfied, or for which there is no condition. """ for key, questions...

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42.538462

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def open_file_from_iso(self, **kwargs): # type: (str) -> PyCdlibIO ''' Open a file for reading in a context manager. This allows the user to operate on the file in user-defined chunks (utilizing the read() method of the returned context manager). Parameters: is...

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49.471698

30.641509

def disconnect_sync(self, conn_id): """Synchronously disconnect from a connected device Args: conn_id (int): A unique identifier that will refer to this connection Returns: dict: A dictionary with two elements 'success': a bool with the result of the con...

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30.875

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def parametric_function(fx='sin(t)', fy='cos(t)', tmin=-1, tmax=1, steps=200, p='t', g=None, erange=False, **kwargs): """ Plots the parametric function over the specified range Parameters ---------- fx='sin(t)', fy='cos(t)' Functions or (matching) lists of functions to plot; ...

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27.791045

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def before_sample(analysis_request): """Method triggered before "sample" transition for the Analysis Request passed in is performed """ if not analysis_request.getDateSampled(): analysis_request.setDateSampled(DateTime()) if not analysis_request.getSampler(): analysis_request.setSamp...

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42.875

7.125

def get_record(self): """Override the base get_record.""" self.update_system_numbers() self.add_systemnumber("CDS") self.fields_list = [ "024", "041", "035", "037", "088", "100", "110", "111", "242", "245", "246", "260", "269", "300", "502", "650", "65...

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33.325

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def status(self): """Get the status of the daemon.""" if self.pidfile is None: raise DaemonError('Cannot get status of daemon without PID file') pid = self._read_pidfile() if pid is None: self._emit_message( '{prog} -- not running\n'.format(prog=s...

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37.18

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def _occursOn(self, myDate): """ Returns true iff an occurence of this event starts on this date (given in the event's own timezone). (Does not include postponements, but does exclude cancellations.) """ # TODO analyse which is faster (rrule or db) and test that first ...

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39.714286

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def _do_write(fname, variable, version, date, table): """Write combining tables to filesystem as python code.""" # pylint: disable=R0914 # Too many local variables (19/15) (col 4) print("writing {} ..".format(fname)) import unicodedata import datetime impo...

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45.45

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def set_result(self, result): """Complete all tasks. """ for future in self.traverse(): # All cancelled futures should have callbacks to removed itself # from this linked list. However, these callbacks are scheduled in # an event loop, so we could still find them in o...

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47.222222

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def factory(self, classname, *args, **kwargs): """ Creates an instance of class looking for it in each module registered. You can add needed params to instance the class. :param classname: Class name you want to create an instance. :type classname: str :return: An instan...

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33.357143

18.928571

def udot(op1, op2): """Matrix or vector dot product that preserves units This is a wrapper around np.dot that preserves units. Examples -------- >>> from unyt import km, s >>> a = np.eye(2)*km >>> b = (np.ones((2, 2)) * 2)*s >>> print(udot(a, b)) [[2. 2.] [2. 2.]] km*s """...

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24.526316

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async def _send_report(self, status): """ Call all subscribed coroutines in _notify whenever a status update occurs. This method is a coroutine """ if len(self._notify) > 0: # Each client gets its own copy of the dict. asyncio.gather(*[coro(dict(s...

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35.181818

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def neutralize_variables(self, tax_benefit_system): """ Neutralizing input variables not in input dataframe and keep some crucial variables """ for variable_name, variable in tax_benefit_system.variables.items(): if variable.formulas: continue if s...

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49.933333

28.6

def collect_analysis(self): ''' :return: a dictionary which is used to get the serialized analyzer definition from the analyzer class. ''' analysis = {} for field in self.fields.values(): for analyzer_name in ('analyzer', 'index_analyzer', 'search_analyzer'): ...

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34.173913

24.347826

def padded_cross_entropy(logits, labels, label_smoothing, weights_fn=weights_nonzero, reduce_sum=True, cutoff=0.0, gaussian=False): """Compute cross-entropy assuming 0s...

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38.380952

16.253968

def retrieve_assignment_overridden_dates_for_quizzes(self, course_id, quiz_assignment_overrides_0_quiz_ids=None): """ Retrieve assignment-overridden dates for quizzes. Retrieve the actual due-at, unlock-at, and available-at dates for quizzes based on the assignment overrides active...

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52.217391

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def fit(self, X, y=None, **fit_params): """Fits the inverse covariance model according to the given training data and parameters. Parameters ----------- X : 2D ndarray, shape (n_features, n_features) Input data. Returns ------- self "...

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33.188406

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def _cached_results(self, start_time, end_time): """ Retrieves cached results for any bucket that has a single cache entry. If a bucket has two cache entries, there is a chance that two different writers previously computed and cached a result since Kronos has no transaction semantics. While it mi...

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48

16.285714

def jsontype(self, name, path=Path.rootPath()): """ Gets the type of the JSON value under ``path`` from key ``name`` """ return self.execute_command('JSON.TYPE', name, str_path(path))

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42.2

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def tmpl_first(text, count=1, skip=0, sep=u'; ', join_str=u'; '): """ * synopsis: ``%first{text}`` or ``%first{text,count,skip}`` or \ ``%first{text,count,skip,sep,join}`` * description: Returns the first item, separated by ; . You can use \ %first{text,count,skip}, where...

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def get_object(cls, api_token, domain_name): """ Class method that will return a Domain object by ID. """ domain = cls(token=api_token, name=domain_name) domain.load() return domain

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def update(self, id, body): """Modifies a connection. Args: id: Id of the connection. body (dict): Specifies which fields are to be modified, and to what values. See: https://auth0.com/docs/api/management/v2#!/Connections/patch_connections_by_id ...

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def create_window(width, height, title, monitor, share): """ Creates a window and its associated context. Wrapper for: GLFWwindow* glfwCreateWindow(int width, int height, const char* title, GLFWmonitor* monitor, GLFWwindow* share); """ return _glfw.glfwCreateWindow(width, height, _to_char_p...

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def _iter_info(self, niter, level=logging.INFO): """ Log iteration number and mismatch Parameters ---------- level logging level Returns ------- None """ max_mis = self.iter_mis[niter - 1] msg = ' Iter {:<d}. max misma...

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def get_local_variable_or_declare_one(self, raw_name, type=None): ''' This function will first check if raw_name has been used to create some variables. If yes, the latest one named in self.variable_name_mapping[raw_name] will be returned. Otherwise, a new variable will be created and th...

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def get_group_members(self, group_id, max_results=None, paging_token=None): """GetGroupMembers. [Preview API] Get direct members of a Group. :param str group_id: Id of the Group. :param int max_results: Maximum number of results to retrieve. :param str paging_token: Paging Token ...

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def normalize(W, copy=True): ''' Normalizes an input weighted connection matrix. If copy is not set, this function will *modify W in place.* Parameters ---------- W : np.ndarray weighted connectivity matrix copy : bool if True, returns a copy of the matrix. Otherwise, modif...

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def preprocess(self, data): """ Processes popcorn JSON and builds a sane data model out of it @param data : The popcorn editor project json blob """ print 'Beginning pre-process...' for url, video in data['media'][0]['clipData'].iteritems(): print 'Downloadin...

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def filter_set(self, name): """ Adds filters from a particular global :class:`FilterSet`. Args: name (str): The name of the set whose filters should be added. """ filter_set = filter_sets[name] for name, filter in iter(filter_set.filters.items()): ...

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def check_dependencies(): """Check external dependecies Return a tuple with the available generators. """ available = [] try: shell('ebook-convert') available.append('calibre') except OSError: pass try: shell('pandoc --help') available.append('pandoc')...

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def alternative_parser(self, family_file): """ Parse alternative formatted family info This parses a information with more than six columns. For alternative information header comlumn must exist and each row must have the same amount of columns as the header. ...

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def save(self, path, binary=False): """Save a set of constructs into the CLIPS data base. If binary is True, the constructs will be saved in binary format. The Python equivalent of the CLIPS load command. """ if binary: ret = lib.EnvBsave(self._env, path.encode()) ...

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def polite_string(a_string): """Returns a "proper" string that should work in both Py3/Py2""" if is_py3() and hasattr(a_string, 'decode'): try: return a_string.decode('utf-8') except UnicodeDecodeError: return a_string return a_string

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def _set_queues_interface(self, v, load=False): """ Setter method for queues_interface, mapped from YANG variable /openflow_state/queues_interface (container) If this variable is read-only (config: false) in the source YANG file, then _set_queues_interface is considered as a private method. Backends...

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def parse_value(self, tup_tree): """ Parse a VALUE element and return its text content as a unicode string. Whitespace is preserved. The conversion of the text representation of the value to a CIM data type object requires CIM type information which is not available on the ...

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async def begin_twophase(self, xid=None): """Begin a two-phase or XA transaction and return a transaction handle. The returned object is an instance of TwoPhaseTransaction, which in addition to the methods provided by Transaction, also provides a TwoPhaseTransaction.prep...

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def t_bin_ZERO(t): r'[^01]' t.lexer.begin('INITIAL') t.type = 'NUMBER' t.value = 0 t.lexer.lexpos -= 1 return t

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def make_pre_authed_request(self, env, method=None, path=None, body=None, headers=None): """Nearly the same as swift.common.wsgi.make_pre_authed_request except that this also always sets the 'swift.source' and user agent. Newer Swift code will support swi...

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async def _workaround_1695335(self, delta, old, new, model): """ This is a (hacky) temporary work around for a bug in Juju where the instance status and agent version fields don't get updated properly by the AllWatcher. Deltas never contain a value for `data['agent-status']['ver...

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def find(self, header): """Return the index of the header in the set or return -1 if not found. :param header: the header to be looked up. """ header = header.lower() for idx, item in enumerate(self._headers): if item.lower() == header: return idx ...

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def _download_file(uri, bulk_api): """Download the bulk API result file for a single batch""" resp = requests.get(uri, headers=bulk_api.headers(), stream=True) with tempfile.TemporaryFile("w+b") as f: for chunk in resp.iter_content(chunk_size=None): f.write(chunk) f.seek(0) ...

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def edge_statistics(docgraph): """print basic statistics about an edge, e.g. layer/attribute counts""" print "Edge statistics\n===============" layer_counts = Counter() attrib_counts = Counter() source_counts = Counter() target_counts = Counter() for source, target, edge_attrs in docgraph.ed...

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def dot(data, color=None, point_size=2, f_tooltip=None): """Create a dot density map :param data: data access object :param color: color :param point_size: point size :param f_tooltip: function to return a tooltip string for a point """ from geoplotlib.layers import DotDensityLayer _glo...

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def vector_check(vector): """ Check input vector items type. :param vector: input vector :type vector : list :return: bool """ for i in vector: if isinstance(i, int) is False: return False if i < 0: return False return True

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def auth(username, password): ''' Authenticate against yubico server ''' _cred = __get_yubico_users(username) client = Yubico(_cred['id'], _cred['key']) try: return client.verify(password) except yubico_exceptions.StatusCodeError as e: log.info('Unable to verify YubiKey `%s...

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def get_sitetree(self, alias): """Gets site tree items from the given site tree. Caches result to dictionary. Returns (tree alias, tree items) tuple. :param str|unicode alias: :rtype: tuple """ cache_ = self.cache get_cache_entry = cache_.get_entry ...

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def split_pem(s): """ Split PEM objects. Useful to process concatenated certificates. """ pem_strings = [] while s != b"": start_idx = s.find(b"-----BEGIN") if start_idx == -1: break end_idx = s.find(b"-----END") end_idx = s.find(b"\n", end_idx) + 1 ...

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def type(self): '''Return 'suite' or 'resource' or None This will return 'suite' if a testcase table is found; It will return 'resource' if at least one robot table is found. If no tables are found it will return None ''' robot_tables = [table for table in self.tables i...

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31.941176

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def _get_real_ip(self): """ Get IP from request. :param request: A usual request object :type request: HttpRequest :return: ipv4 string or None """ try: # Trying to work with most common proxy headers real_ip = self.request.META['HTTP_X_FO...

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def setError(self, msg=None, title=None): """ Shows and error message """ if msg is not None: self.messageLabel.setText(msg) if title is not None: self.titleLabel.setText(title)

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def _load_results(self, container_id): """ load results from recent build :return: BuildResults """ if self.temp_dir: dt = DockerTasker() # FIXME: load results only when requested # results_path = os.path.join(self.temp_dir, RESULTS_JSON) ...

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def is_empty(self): """Asserts that val is empty.""" if len(self.val) != 0: if isinstance(self.val, str_types): self._err('Expected <%s> to be empty string, but was not.' % self.val) else: self._err('Expected <%s> to be empty, but was not.' % self....

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def merge_groups(self, indices): """Extend the lists within the DICOM groups dictionary. The indices will indicate which list have to be extended by which other list. Parameters ---------- indices: list or tuple of 2 iterables of int, bot having the same len ...

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def _save_metadata(self): """ Write this prefix metadata to disk Returns: None """ with open(self.paths.metadata(), 'w') as metadata_fd: utils.json_dump(self.metadata, metadata_fd)

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def get_graph_csv(): """ Allows the user to download a graph's data as a CSV file. :return: show a dialog box that allows the user to download the CSV file. """ assert request.method == "POST", "POST request expected received {}".format(request.method) if request.method == "POST": try: ...

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48.142857

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def addProfile(self, profile): """ Adds the inputed profile to the system. :param profile | <XViewProfile> """ if ( profile in self._profiles ): return self._profiles.append(profile) self._profileCombo.blockSignals(True) ...

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def add_archive(self, src_file, remove_final=False): """ Adds the contents of another tarfile to the build. It will be repackaged during context generation, and added to the root level of the file system. Therefore, it is not required that tar (or compression utilities) is present in the...

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54.2

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def get_zorder(self, overlay, key, el): """ Computes the z-order of element in the NdOverlay taking into account possible batching of elements. """ spec = util.get_overlay_spec(overlay, key, el) return self.ordering.index(spec)

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38.428571

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def check_field_exists(self, field_name): """Implements field exists check for debugging purposes. :param field_name: :return: """ if not settings.DEBUG: return try: self.lookup_opts.get_field(field_name) except FieldDoesNotExist as e: ...

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def configure(level=logging.WARNING, handler=None, formatter=None): """Configure Logr @param handler: Logger message handler @type handler: logging.Handler or None @param formatter: Logger message Formatter @type formatter: logging.Formatter or None """ if forma...

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29.722222

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def clean_lines(string_list, remove_empty_lines=True): """ Strips whitespace, carriage returns and empty lines from a list of strings. Args: string_list: List of strings remove_empty_lines: Set to True to skip lines which are empty after stripping. Returns: List of ...

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27.857143

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def _get_file(self, share_name, directory_name, file_name, start_range=None, end_range=None, range_get_content_md5=None, timeout=None): ''' Downloads a file's content, metadata, and properties. You can specify a range if you don't need to download the file in it...

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48.037736

20.45283

def Receive(self, replytype, **kw): '''Parse message, create Python object. KeyWord data: faults -- list of WSDL operation.fault typecodes wsaction -- If using WS-Address, must specify Action value we expect to receive. ''' self.ReceiveSOAP(**kw...

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32.52381

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def _deregister(self, session): """ Deregister a session. """ if session in self: self._sessions.pop(self._get_session_key(session), None)

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29.666667

10

def _CreateDynamicDisplayAdSettings(media_service, opener): """Creates settings for dynamic display ad. Args: media_service: a SudsServiceProxy instance for AdWords's MediaService. opener: an OpenerDirector instance. Returns: The dynamic display ad settings. """ image = _CreateImage(media_servic...

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24.115385

21.115385

def samtools_index(self, bam_file): """Index a bam file.""" cmd = self.tools.samtools + " index {0}".format(bam_file) return cmd

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37.25

13

def sample_shape(self): """Sample shape of random variable as a `TensorShape`.""" if isinstance(self._sample_shape, tf.Tensor): return tf.TensorShape(tf.get_static_value(self._sample_shape)) return tf.TensorShape(self._sample_shape)

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49.2

11.8

def get_sgburst_waveform(template=None, **kwargs): """Return the plus and cross polarizations of a time domain sine-Gaussian burst waveform. Parameters ---------- template: object An object that has attached properties. This can be used to subsitute for keyword arguments. A common e...

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31.675676

19.459459

def _call_retry(self, force_retry): """Call request and retry up to max_attempts times (or none if self.max_attempts=1)""" last_exception = None for i in range(self.max_attempts): try: log.info("Calling %s %s" % (self.method, self.url)) response = self...

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42.84375

21.125

def http_redirect_message(message, location, relay_state="", typ="SAMLRequest", sigalg='', signer=None, **kwargs): """The HTTP Redirect binding defines a mechanism by which SAML protocol messages can be transmitted within URL parameters. Messages are encoded for use with this bindi...

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37.018182

20.909091

def get_providing_power_source_type(self): """ Returns GetSystemPowerStatus().ACLineStatus @raise: WindowsError if any underlying error occures. """ power_status = SYSTEM_POWER_STATUS() if not GetSystemPowerStatus(pointer(power_status)): raise WinError() ...

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36.3

12.5

def reset_status(self): """Reset progress bars""" for item in self.items: item.isProcessing = False item.currentProgress = 0

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32

6.6

def add_residue_from_geo(structure, geo): '''Adds a residue to chain A model 0 of the given structure, and returns the new structure. The residue to be added is determined by the geometry object given as second argument. This function is a helper function and should not normally be called direc...

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35.141304

20.423913

def _parse_genotype(self, vcf_fields): """Parse genotype from VCF line data""" format_col = vcf_fields[8].split(':') genome_data = vcf_fields[9].split(':') try: gt_idx = format_col.index('GT') except ValueError: return [] return [int(x) for x in re...

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37.7

12.6

def getScriptLocation(): """Helper function to get the location of a Python file.""" location = os.path.abspath("./") if __file__.rfind("/") != -1: location = __file__[:__file__.rfind("/")] return location

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34.333333

10

def spi_configure(self, polarity, phase, bitorder): """Configure the SPI interface.""" ret = api.py_aa_spi_configure(self.handle, polarity, phase, bitorder) _raise_error_if_negative(ret)

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51.75

12.75

def p_file_contrib_1(self, p): """file_contrib : FILE_CONTRIB LINE""" try: if six.PY2: value = p[2].decode(encoding='utf-8') else: value = p[2] self.builder.add_file_contribution(self.document, value) except OrderError: ...

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37.5

17.7

def doublewrap(f): ''' a decorator decorator, allowing the decorator to be used as: @decorator(with, arguments, and=kwargs) or @decorator Ref: http://stackoverflow.com/questions/653368/how-to-create-a-python-decorator-that-can-be-used-either-with-or-without-paramet ''' @functools.wraps(f...

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33.611111

24.722222

def get_differing_atom_residue_ids(self, pdb_name, pdb_list = []): '''Returns a list of residues in pdb_name which differ from the pdbs corresponding to the names in pdb_list.''' # partition_by_sequence is a map pdb_name -> Int where two pdb names in the same equivalence class map to the same integer (...

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58.162162

36.594595

def _add_additional_properties(position, properties_dict): """ Sets AdditionalProperties of the ProbModelXML. """ add_prop = etree.SubElement(position, 'AdditionalProperties') for key, value in properties_dict.items(): etree.SubElement(add_prop, 'Property', attrib={'n...

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48.714286

17

def inbox_folder(self): """ Shortcut to get Inbox Folder instance :rtype: mailbox.Folder """ return self.folder_constructor(parent=self, name='Inbox', folder_id=OutlookWellKnowFolderNames .INBOX.value)

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38.125

17.375

def ssh(container, cmd='', user='root', password='root'): ''' SSH into a running container, using the host as a jump host. This requires the container to have a running sshd process. Args: * container: Container name or ID * cmd='': Command to run in the container * user='root':...

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42.266667

23.2

def monitor(args): """ file monitor mode """ filename = args.get('MDFILE') if not filename: print col('Need file argument', 2) raise SystemExit last_err = '' last_stat = 0 while True: if not os.path.exists(filename): last_err = 'File %s not found. Will continu...

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30.083333

13.125

def process_query_result(self, query_result, start_date, end_date): """Build the result using the query result.""" def build_buckets(agg, fields, bucket_result): """Build recursively result buckets.""" # Add metric results for current bucket for metric in self.metric_...

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44.666667

17.242424

def render_source(output_dir, package_specs, version): """ Render and output """ destination_filename = "%s/sbp_out.tex" % output_dir py_template = JENV.get_template(TEMPLATE_NAME) stable_msgs = [] unstable_msgs = [] prims = [] for p in sorted(package_specs, key=attrgetter('identifier')): pkg_name...

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34.421053

14.596491

def MappingField(cls, child_key, default=NOTHING, required=True, repr=False, key=None): """ Create new mapping field on a model. :param cls: class (or name) of the model to be related in Sequence. :param child_key: key field on the child object to be used as the map key. :param def...

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53.5

23.5

def timeAtThreshold(self,dateTime): ''' A convenience method for checking when a time is on the start/end boundary for this rule. ''' # Anything that's not at a day boundary is for sure not at a threshold. if not ( dateTime.hour == self.dayStarts and dateTime...

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36.636364

24.636364

def set_ports(self, port0 = 0x00, port1 = 0x00): 'Writes specified value to the pins defined as output by method. Writing to input pins has no effect.' self.bus.write_byte_data(self.address, self.CONTROL_PORT0, port0) self.bus.write_byte_data(self.address, self.CONTROL_PORT0, port1) retu...

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63.6

34

def _ostaunicode(src): # type: (str) -> bytes ''' Internal function to create an OSTA byte string from a source string. ''' if have_py_3: bytename = src else: bytename = src.decode('utf-8') # type: ignore try: enc = bytename.encode('latin-1') encbyte = b'\x0...

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26.647059

20.529412