kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def geo_max_distance(left, right): """Returns the 2-dimensional maximum distance between two geometries in projected units. If g1 and g2 is the same geometry the function will return the distance between the two vertices most far from each other in that geometry Parameters ---------- left :...	[ "def", "geo_max_distance", "(", "left", ",", "right", ")", ":", "op", "=", "ops", ".", "GeoMaxDistance", "(", "left", ",", "right", ")", "return", "op", ".", "to_expr", "(", ")" ]	27.294118	20.470588
def watch(key, recurse=False, profile=None, timeout=0, index=None, **kwargs): ''' .. versionadded:: 2016.3.0 Makes a best effort to watch for a key or tree change in etcd. Returns a dict containing the new key value ( or None if the key was deleted ), the modifiedIndex of the key, whether the key c...	[ "def", "watch", "(", "key", ",", "recurse", "=", "False", ",", "profile", "=", "None", ",", "timeout", "=", "0", ",", "index", "=", "None", ",", "", "", "kwargs", ")", ":", "client", "=", "__utils__", "[", "'etcd_util.get_conn'", "]", "(", "__opts_...	38.956522	29.913043
def to_array(self): """ Serializes this KeyboardButton to a dictionary. :return: dictionary representation of this object. :rtype: dict """ array = super(KeyboardButton, self).to_array() array['text'] = u(self.text) # py2: type unicode, py3: type str if...	[ "def", "to_array", "(", "self", ")", ":", "array", "=", "super", "(", "KeyboardButton", ",", "self", ")", ".", "to_array", "(", ")", "array", "[", "'text'", "]", "=", "u", "(", "self", ".", "text", ")", "# py2: type unicode, py3: type str", "if", "self",...	37.8	20.466667
def __get_button_events(self, state, timeval=None): """Get the button events from xinput.""" changed_buttons = self.__detect_button_events(state) events = self.__emulate_buttons(changed_buttons, timeval) return events	[ "def", "__get_button_events", "(", "self", ",", "state", ",", "timeval", "=", "None", ")", ":", "changed_buttons", "=", "self", ".", "__detect_button_events", "(", "state", ")", "events", "=", "self", ".", "__emulate_buttons", "(", "changed_buttons", ",", "tim...	49	15
def merge_lvm_data(primary, secondary, name_key): """ Returns a dictionary containing the set of data from primary and secondary where values in primary will always be returned if present, and values in secondary will only be returned if not present in primary, or if the value in primary is `None`. ...	[ "def", "merge_lvm_data", "(", "primary", ",", "secondary", ",", "name_key", ")", ":", "pri_data", "=", "to_name_key_dict", "(", "primary", ",", "name_key", ")", "# Prime results with secondary data, to be updated with primary data", "combined_data", "=", "to_name_key_dict",...	39.217391	23.913043
def _GetRealImagArray(Array): """ Returns the real and imaginary components of each element in an array and returns them in 2 resulting arrays. Parameters ---------- Array : ndarray Input array Returns ------- RealArray : ndarray The real components of the input array ...	[ "def", "_GetRealImagArray", "(", "Array", ")", ":", "ImagArray", "=", "_np", ".", "array", "(", "[", "num", ".", "imag", "for", "num", "in", "Array", "]", ")", "RealArray", "=", "_np", ".", "array", "(", "[", "num", ".", "real", "for", "num", "in",...	27.684211	21.263158
def convert_string_to_type(string_value): """Converts a string into a type or class :param string_value: the string to be converted, e.g. "int" :return: The type derived from string_value, e.g. int """ # If the parameter is already a type, return it if string_value in ['None', type(None).__name...	[ "def", "convert_string_to_type", "(", "string_value", ")", ":", "# If the parameter is already a type, return it", "if", "string_value", "in", "[", "'None'", ",", "type", "(", "None", ")", ".", "__name__", "]", ":", "return", "type", "(", "None", ")", "if", "isi...	32.631579	15.368421
def _create_pileup(bam_file, data, out_base, background): """Create pileup calls in the regions of interest for hg19 -> GRCh37 chromosome mapping. """ out_file = "%s-mpileup.txt" % out_base if not utils.file_exists(out_file): with file_transaction(data, out_file) as tx_out_file: back...	[ "def", "_create_pileup", "(", "bam_file", ",", "data", ",", "out_base", ",", "background", ")", ":", "out_file", "=", "\"%s-mpileup.txt\"", "%", "out_base", "if", "not", "utils", ".", "file_exists", "(", "out_file", ")", ":", "with", "file_transaction", "(", ...	64.434783	25.521739
def gauss_jordan(A, x, b): """Linear equation system Ax=b by Gauss-Jordan :param A: n by m matrix :param x: table of size n :param b: table of size m :modifies: x will contain solution if any :returns int: 0 if no solution, 1 if solution unique, 2 otherwise :co...	[ "def", "gauss_jordan", "(", "A", ",", "x", ",", "b", ")", ":", "n", "=", "len", "(", "x", ")", "m", "=", "len", "(", "b", ")", "assert", "len", "(", "A", ")", "==", "m", "and", "len", "(", "A", "[", "0", "]", ")", "==", "n", "S", "=", ...	28.625	13.65625
def dependencies_order_of_build(target_contract, dependencies_map): """ Return an ordered list of contracts that is sufficient to successfully deploy the target contract. Note: This function assumes that the `dependencies_map` is an acyclic graph. """ if not dependencies_map: return...	[ "def", "dependencies_order_of_build", "(", "target_contract", ",", "dependencies_map", ")", ":", "if", "not", "dependencies_map", ":", "return", "[", "target_contract", "]", "if", "target_contract", "not", "in", "dependencies_map", ":", "raise", "ValueError", "(", "...	31.741935	21.387097
def __remove_obsolete_metadata(self): """ Removes obsolete entries from the metadata of all stored routines. """ clean = {} for key, _ in self._source_file_names.items(): if key in self._pystratum_metadata: clean[key] = self._pystratum_metadata[key] ...	[ "def", "__remove_obsolete_metadata", "(", "self", ")", ":", "clean", "=", "{", "}", "for", "key", ",", "_", "in", "self", ".", "_source_file_names", ".", "items", "(", ")", ":", "if", "key", "in", "self", ".", "_pystratum_metadata", ":", "clean", "[", ...	35	13.8
def config_present(name): ''' Ensure a specific configuration line exists in the running config name config line to set Examples: .. code-block:: yaml add snmp group: onyx.config_present: - names: - snmp-server community randoSNMPstringHERE gro...	[ "def", "config_present", "(", "name", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'result'", ":", "False", ",", "'changes'", ":", "{", "}", ",", "'comment'", ":", "''", "}", "matches", "=", "__salt__", "[", "'onyx.cmd'", "]", "(", "'find'...	27.333333	22.784314
def update_todo_menu(self): """Update todo list menu""" editorstack = self.get_current_editorstack() results = editorstack.get_todo_results() self.todo_menu.clear() filename = self.get_current_filename() for text, line0 in results: icon = ima.icon('todo...	[ "def", "update_todo_menu", "(", "self", ")", ":", "editorstack", "=", "self", ".", "get_current_editorstack", "(", ")", "results", "=", "editorstack", ".", "get_todo_results", "(", ")", "self", ".", "todo_menu", ".", "clear", "(", ")", "filename", "=", "self...	45.75	11.916667
def __pop_params(self, tid): """ Forgets the arguments tuple for the last call to the hooked function from this thread. @type tid: int @param tid: Thread global ID. """ stack = self.__paramStack[tid] stack.pop() if not stack: del self...	[ "def", "__pop_params", "(", "self", ",", "tid", ")", ":", "stack", "=", "self", ".", "__paramStack", "[", "tid", "]", "stack", ".", "pop", "(", ")", "if", "not", "stack", ":", "del", "self", ".", "__paramStack", "[", "tid", "]" ]	27.25	13.916667
def api_path_map(self): """Cached dict of api_path: func.""" if self._api_path_cache is None: self._api_path_cache = { api_path: func for api_path, func in api_endpoints(self) } return self._api_path_cache	[ "def", "api_path_map", "(", "self", ")", ":", "if", "self", ".", "_api_path_cache", "is", "None", ":", "self", ".", "_api_path_cache", "=", "{", "api_path", ":", "func", "for", "api_path", ",", "func", "in", "api_endpoints", "(", "self", ")", "}", "retur...	32.555556	7.888889
def get_apex(self, lat, height=None): """ Calculate apex height Parameters ----------- lat : (float) Latitude in degrees height : (float or NoneType) Height above the surface of the earth in km or NoneType to use reference height (default=None...	[ "def", "get_apex", "(", "self", ",", "lat", ",", "height", "=", "None", ")", ":", "lat", "=", "helpers", ".", "checklat", "(", "lat", ",", "name", "=", "'alat'", ")", "if", "height", "is", "None", ":", "height", "=", "self", ".", "refh", "cos_lat_s...	28.416667	17.75
def load_xml_db(self): """Load the Lutron database from the server.""" import urllib.request xmlfile = urllib.request.urlopen('http://' + self._host + '/DbXmlInfo.xml') xml_db = xmlfile.read() xmlfile.close() _LOGGER.info("Loaded xml db") parser = LutronXmlDbParser(lutron=self, xml_db_str=...	[ "def", "load_xml_db", "(", "self", ")", ":", "import", "urllib", ".", "request", "xmlfile", "=", "urllib", ".", "request", ".", "urlopen", "(", "'http://'", "+", "self", ".", "_host", "+", "'/DbXmlInfo.xml'", ")", "xml_db", "=", "xmlfile", ".", "read", "...	30.5	20.555556
def start_roles(self, service_name, deployment_name, role_names): ''' Starts the specified virtual machines. service_name: The name of the service. deployment_name: The name of the deployment. role_names: The names of the roles, as an enumerab...	[ "def", "start_roles", "(", "self", ",", "service_name", ",", "deployment_name", ",", "role_names", ")", ":", "_validate_not_none", "(", "'service_name'", ",", "service_name", ")", "_validate_not_none", "(", "'deployment_name'", ",", "deployment_name", ")", "_validate_...	39.388889	19.277778
def check_node_position( cls, parent_id, position, on_same_branch, db_session=None, args, *kwargs ): """ Checks if node position for given parent is valid, raises exception if this is not the case :param parent_id: :param position: :param on_same_branch: in...	[ "def", "check_node_position", "(", "cls", ",", "parent_id", ",", "position", ",", "on_same_branch", ",", "db_session", "=", "None", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "db_session", "=", "get_db_session", "(", "db_session", ")", "if", "not...	38.416667	20.25
def _proposal_params(self, state): """ Proposal parameters Calculate parameters needed for the proposal. Inputs : state : x : the present sample, the place to linearize around f : f(x), function value at x J : ...	[ "def", "_proposal_params", "(", "self", ",", "state", ")", ":", "x", "=", "state", "[", "'x'", "]", "f", "=", "state", "[", "'f'", "]", "J", "=", "state", "[", "'J'", "]", "JJ", "=", "np", ".", "dot", "(", "J", ".", "T", ",", "J", ")", "if"...	28.659091	16.159091
def list_dir(self, context): """Return a listing of all of the functions in this context including builtins. Args: context (object): The context to print a directory for. Returns: str """ doc = inspect.getdoc(context) listing = "" listi...	[ "def", "list_dir", "(", "self", ",", "context", ")", ":", "doc", "=", "inspect", ".", "getdoc", "(", "context", ")", "listing", "=", "\"\"", "listing", "+=", "\"\\n\"", "listing", "+=", "annotate", ".", "context_name", "(", "context", ")", "+", "\"\\n\""...	27.240741	20.537037
def encode(self, b64=False): """Encode the payload for transmission.""" encoded_payload = b'' for pkt in self.packets: encoded_packet = pkt.encode(b64=b64) packet_len = len(encoded_packet) if b64: encoded_payload += str(packet_len).encode('utf-...	[ "def", "encode", "(", "self", ",", "b64", "=", "False", ")", ":", "encoded_payload", "=", "b''", "for", "pkt", "in", "self", ".", "packets", ":", "encoded_packet", "=", "pkt", ".", "encode", "(", "b64", "=", "b64", ")", "packet_len", "=", "len", "(",...	41.05	13.15
def get_assessment_parts_by_ids(self, assessment_part_ids): """Gets an ``AssessmentPartList`` corresponding to the given ``IdList``. arg: assessment_part_ids (osid.id.IdList): the list of ``Ids`` to retrieve return: (osid.assessment.authoring.AssessmentPartList) - the ...	[ "def", "get_assessment_parts_by_ids", "(", "self", ",", "assessment_part_ids", ")", ":", "# Implemented from template for", "# osid.resource.ResourceLookupSession.get_resources_by_ids", "# NOTE: This implementation currently ignores plenary view", "collection", "=", "JSONClientValidated", ...	49.323529	17.941176
def GetMACBRepresentation(self, event): """Retrieves the MACB representation. Args: event (EventObject): event. Returns: str: MACB representation. """ data_type = getattr(event, 'data_type', None) if not data_type: return '....' # The filestat parser is somewhat limited....	[ "def", "GetMACBRepresentation", "(", "self", ",", "event", ")", ":", "data_type", "=", "getattr", "(", "event", ",", "'data_type'", ",", "None", ")", "if", "not", "data_type", ":", "return", "'....'", "# The filestat parser is somewhat limited.", "if", "data_type"...	32.514286	15.514286
def fire_event(self, event_name, service_name, default=None): """ Fire a data_ready, data_lost, start, or stop event on a given service. """ service = self.get_service(service_name) callbacks = service.get(event_name, default) if not callbacks: return ...	[ "def", "fire_event", "(", "self", ",", "event_name", ",", "service_name", ",", "default", "=", "None", ")", ":", "service", "=", "self", ".", "get_service", "(", "service_name", ")", "callbacks", "=", "service", ".", "get", "(", "event_name", ",", "default...	38.933333	12.533333
def help_center_section_articles(self, id, locale=None, **kwargs): "https://developer.zendesk.com/rest_api/docs/help_center/articles#list-articles" api_path = "/api/v2/help_center/sections/{id}/articles.json" api_path = api_path.format(id=id) if locale: api_opt_path = "/api/v...	[ "def", "help_center_section_articles", "(", "self", ",", "id", ",", "locale", "=", "None", ",", "", "", "kwargs", ")", ":", "api_path", "=", "\"/api/v2/help_center/sections/{id}/articles.json\"", "api_path", "=", "api_path", ".", "format", "(", "id", "=", "id"...	59.25	24.75
def register(self, func): """ Register function to templates. """ if callable(func): self.functions[func.__name__] = func return func	[ "def", "register", "(", "self", ",", "func", ")", ":", "if", "callable", "(", "func", ")", ":", "self", ".", "functions", "[", "func", ".", "__name__", "]", "=", "func", "return", "func" ]	33	11.6
def delete(key, service=None, profile=None): # pylint: disable=W0613 ''' Get a value from the etcd service ''' client = _get_conn(profile) try: client.delete(key) return True except Exception: return False	[ "def", "delete", "(", "key", ",", "service", "=", "None", ",", "profile", "=", "None", ")", ":", "# pylint: disable=W0613", "client", "=", "_get_conn", "(", "profile", ")", "try", ":", "client", ".", "delete", "(", "key", ")", "return", "True", "except",...	24.5	21.3
def _try_pydatetime(x): """Try to convert to pandas objects to datetimes. Plotly doesn't know how to handle them. """ try: # for datetimeindex x = [y.isoformat() for y in x.to_pydatetime()] except AttributeError: pass try: # for generic series x = [y.isof...	[ "def", "_try_pydatetime", "(", "x", ")", ":", "try", ":", "# for datetimeindex", "x", "=", "[", "y", ".", "isoformat", "(", ")", "for", "y", "in", "x", ".", "to_pydatetime", "(", ")", "]", "except", "AttributeError", ":", "pass", "try", ":", "# for gen...	24.75	18.25
def get_item_metadata(self, handle): """Return dictionary containing all metadata associated with handle. In other words all the metadata added using the ``add_item_metadata`` method. :param handle: handle for accessing an item before the dataset is frozen ...	[ "def", "get_item_metadata", "(", "self", ",", "handle", ")", ":", "if", "not", "self", ".", "_metadata_dir_exists", "(", ")", ":", "return", "{", "}", "prefix", "=", "self", ".", "_handle_to_fragment_absprefixpath", "(", "handle", ")", "files", "=", "[", "...	32.423077	20.461538
def register_handler(self, callable_obj, entrypoint, methods=('GET',)): """Register a handler callable to a specific route. Args: entrypoint (str): The uri relative path. methods (tuple): A tuple of valid method strings. callable_obj (callable): The callable object. ...	[ "def", "register_handler", "(", "self", ",", "callable_obj", ",", "entrypoint", ",", "methods", "=", "(", "'GET'", ",", ")", ")", ":", "router_obj", "=", "Route", ".", "wrap_callable", "(", "uri", "=", "entrypoint", ",", "methods", "=", "methods", ",", "...	29.580645	20.354839
def license(self, license_id: str, token: dict = None, prot: str = "https") -> dict: """Get details about a specific license. :param str token: API auth token :param str license_id: license UUID :param str prot: https [DEFAULT] or http (use it only for dev and tracking needs). ...	[ "def", "license", "(", "self", ",", "license_id", ":", "str", ",", "token", ":", "dict", "=", "None", ",", "prot", ":", "str", "=", "\"https\"", ")", "->", "dict", ":", "# handling request parameters", "payload", "=", "{", "\"lid\"", ":", "license_id", "...	30.428571	15.892857
def build_pos_grid(start, end, nstep, mesh=False): """ Return a grid of positions starting at X,Y given by 'start', and ending at X,Y given by 'end'. The grid will be completely filled in X and Y by every 'step' interval. """ # Build X and Y arrays dx = end[0] - start[0] if dx < 0: ...	[ "def", "build_pos_grid", "(", "start", ",", "end", ",", "nstep", ",", "mesh", "=", "False", ")", ":", "# Build X and Y arrays", "dx", "=", "end", "[", "0", "]", "-", "start", "[", "0", "]", "if", "dx", "<", "0", ":", "nstart", "=", "end", "end", ...	30	19.84
def _check_all_devices_in_sync(self): '''Wait until all devices have failover status of 'In Sync'. :raises: UnexpectedClusterState ''' if len(self._get_devices_by_failover_status('In Sync')) != \ len(self.devices): msg = "Expected all devices in group to hav...	[ "def", "_check_all_devices_in_sync", "(", "self", ")", ":", "if", "len", "(", "self", ".", "_get_devices_by_failover_status", "(", "'In Sync'", ")", ")", "!=", "len", "(", "self", ".", "devices", ")", ":", "msg", "=", "\"Expected all devices in group to have 'In S...	38.1	21.9
def create_user(self, login=None, password=None, user_name=None, envs=[], query='/users/'): """ `login` - Login or username for user `password` - Plain text password for user `user_name` - Full name of user Create user in specified environments """ login = login....	[ "def", "create_user", "(", "self", ",", "login", "=", "None", ",", "password", "=", "None", ",", "user_name", "=", "None", ",", "envs", "=", "[", "]", ",", "query", "=", "'/users/'", ")", ":", "login", "=", "login", ".", "lower", "(", ")", "data", ...	44.060606	23.878788
def process_docstring(app, what, name, obj, options, lines): """Enable markdown syntax in docstrings""" markdown = "\n".join(lines) # ast = cm_parser.parse(markdown) # html = cm_renderer.render(ast) rest = m2r(markdown) rest.replace("\r\n", "\n") del lines[:] lines.extend(rest.spl...	[ "def", "process_docstring", "(", "app", ",", "what", ",", "name", ",", "obj", ",", "options", ",", "lines", ")", ":", "markdown", "=", "\"\\n\"", ".", "join", "(", "lines", ")", "# ast = cm_parser.parse(markdown)", "# html = cm_renderer.render(ast)", "rest", "="...	26.5	17.333333
def read(self, domain, type_name, search_command, body=None): """Read entry in ThreatConnect Data Store Args: domain (string): One of 'local', 'organization', or 'system'. type_name (string): This is a free form index type name. The ThreatConnect API will use thi...	[ "def", "read", "(", "self", ",", "domain", ",", "type_name", ",", "search_command", ",", "body", "=", "None", ")", ":", "return", "self", ".", "_request", "(", "domain", ",", "type_name", ",", "search_command", ",", "'GET'", ",", "body", ")" ]	47.272727	22.727273
def __parts_and_divisions(self): """ The parts and divisions directly part of this element. """ from .division import Division from .part import Part from .placeholder_part import PlaceholderPart text = self.node.text if text: stripped_text =...	[ "def", "__parts_and_divisions", "(", "self", ")", ":", "from", ".", "division", "import", "Division", "from", ".", "part", "import", "Part", "from", ".", "placeholder_part", "import", "PlaceholderPart", "text", "=", "self", ".", "node", ".", "text", "if", "t...	31.24	13.88
def get_filehandle(self): """Get HDF4 filehandle.""" if os.path.exists(self.filename): self.filehandle = SD(self.filename, SDC.READ) logger.debug("Loading dataset {}".format(self.filename)) else: raise IOError("Path {} does not exist.".format(self.filename))	[ "def", "get_filehandle", "(", "self", ")", ":", "if", "os", ".", "path", ".", "exists", "(", "self", ".", "filename", ")", ":", "self", ".", "filehandle", "=", "SD", "(", "self", ".", "filename", ",", "SDC", ".", "READ", ")", "logger", ".", "debug"...	44.571429	17.428571
def get_user(self, user_name, raw=False): """ Get a dictionary or object with info about the given user from the Hacker News API. Will raise an requests.HTTPError if we got a non-200 response back. Response parameters: "id' -> The user's unique username. Case-sensiti...	[ "def", "get_user", "(", "self", ",", "user_name", ",", "raw", "=", "False", ")", ":", "suburl", "=", "\"v0/user/{}.json\"", ".", "format", "(", "user_name", ")", "try", ":", "user_data", "=", "self", ".", "_make_request", "(", "suburl", ")", "except", "r...	54.185185	27.962963
def table(self, data2=None, dense=True): """ Compute the counts of values appearing in a column, or co-occurence counts between two columns. :param H2OFrame data2: An optional single column to aggregate counts by. :param bool dense: If True (default) then use dense representation, which...	[ "def", "table", "(", "self", ",", "data2", "=", "None", ",", "dense", "=", "True", ")", ":", "return", "H2OFrame", ".", "_expr", "(", "expr", "=", "ExprNode", "(", "\"table\"", ",", "self", ",", "data2", ",", "dense", ")", ")", "if", "data2", "is",...	56.916667	35.083333
def build_current_graph(): """ Read current state of SQL items from the current project state. Returns: (SQLStateGraph) Current project state graph. """ graph = SQLStateGraph() for app_name, config in apps.app_configs.items(): try: module = import_module( ...	[ "def", "build_current_graph", "(", ")", ":", "graph", "=", "SQLStateGraph", "(", ")", "for", "app_name", ",", "config", "in", "apps", ".", "app_configs", ".", "items", "(", ")", ":", "try", ":", "module", "=", "import_module", "(", "'.'", ".", "join", ...	31.608696	18.391304
def save(self, name, content, max_length=None): """ Saves the given content with the given name using the local storage. If the :attr:`~queued_storage.backends.QueuedStorage.delayed` attribute is ``True`` this will automatically call the :meth:`~queued_storage.backends.QueuedStor...	[ "def", "save", "(", "self", ",", "name", ",", "content", ",", "max_length", "=", "None", ")", ":", "cache_key", "=", "self", ".", "get_cache_key", "(", "name", ")", "cache", ".", "set", "(", "cache_key", ",", "False", ")", "# Use a name that is available o...	41	20.096774
def export_data(self): """ Get the results with the modified_data """ result = {} data = self.__original_data__.copy() data.update(self.__modified_data__) for key, value in data.items(): if key in self.__deleted_fields__: continue ...	[ "def", "export_data", "(", "self", ")", ":", "result", "=", "{", "}", "data", "=", "self", ".", "__original_data__", ".", "copy", "(", ")", "data", ".", "update", "(", "self", ".", "__modified_data__", ")", "for", "key", ",", "value", "in", "data", "...	27.058824	12.823529
def get_ddG_results(self): """Parse the results from BuildModel and get the delta delta G's. A positive ddG means that the mutation(s) is destabilzing, negative means stabilizing. - highly stabilising (ΔΔG < −1.84 kcal/mol); - stabilising (−1.84 kcal/mol ≤ ΔΔG < −0.92 kcal/mol)...	[ "def", "get_ddG_results", "(", "self", ")", ":", "foldx_avg_df", "=", "self", ".", "df_mutation_ddG_avg", "foldx_avg_ddG", "=", "{", "}", "results", "=", "foldx_avg_df", "[", "[", "'Pdb'", ",", "'total energy'", ",", "'SD'", "]", "]", ".", "T", ".", "to_di...	39.413793	25.206897
def shortcut( name, target, arguments=None, working_dir=None, description=None, icon_location=None, force=False, backupname=None, makedirs=False, user=None, **kwargs): ''' Create a Windows shortcut If the file already e...	[ "def", "shortcut", "(", "name", ",", "target", ",", "arguments", "=", "None", ",", "working_dir", "=", "None", ",", "description", "=", "None", ",", "icon_location", "=", "None", ",", "force", "=", "False", ",", "backupname", "=", "None", ",", "makedirs"...	38.46063	20.34252
def wcs_to_axes(w, npix): """Generate a sequence of bin edge vectors corresponding to the axes of a WCS object.""" npix = npix[::-1] x = np.linspace(-(npix[0]) / 2., (npix[0]) / 2., npix[0] + 1) * np.abs(w.wcs.cdelt[0]) y = np.linspace(-(npix[1]) / 2., (npix[1]) / 2., ...	[ "def", "wcs_to_axes", "(", "w", ",", "npix", ")", ":", "npix", "=", "npix", "[", ":", ":", "-", "1", "]", "x", "=", "np", ".", "linspace", "(", "-", "(", "npix", "[", "0", "]", ")", "/", "2.", ",", "(", "npix", "[", "0", "]", ")", "/", ...	29.05	22.3
def p_casecontent_condition_single(self, p): 'casecontent_condition : casecontent_condition COMMA expression' p[0] = p[1] + (p[3],) p.set_lineno(0, p.lineno(1))	[ "def", "p_casecontent_condition_single", "(", "self", ",", "p", ")", ":", "p", "[", "0", "]", "=", "p", "[", "1", "]", "+", "(", "p", "[", "3", "]", ",", ")", "p", ".", "set_lineno", "(", "0", ",", "p", ".", "lineno", "(", "1", ")", ")" ]	45.25	12.75
def debye_E_single(x): """ calculate Debye energy using old fortran routine :params x: Debye x value :return: Debye energy """ # make the function handles both scalar and array if ((x > 0.0) & (x <= 0.1)): result = 1. - 0.375 * x + x * x * \ (0.05 - (5.952380953e-4) * x ...	[ "def", "debye_E_single", "(", "x", ")", ":", "# make the function handles both scalar and array", "if", "(", "(", "x", ">", "0.0", ")", "&", "(", "x", "<=", "0.1", ")", ")", ":", "result", "=", "1.", "-", "0.375", "", "x", "+", "x", "", "x", "*", ...	34.394737	13.342105
def GetConsoleTitle() -> str: """ GetConsoleTitle from Win32. Return str. """ arrayType = ctypes.c_wchar * MAX_PATH values = arrayType() ctypes.windll.kernel32.GetConsoleTitleW(values, MAX_PATH) return values.value	[ "def", "GetConsoleTitle", "(", ")", "->", "str", ":", "arrayType", "=", "ctypes", ".", "c_wchar", "*", "MAX_PATH", "values", "=", "arrayType", "(", ")", "ctypes", ".", "windll", ".", "kernel32", ".", "GetConsoleTitleW", "(", "values", ",", "MAX_PATH", ")",...	26.444444	11.111111
def init_dict(data, index, columns, dtype=None): """ Segregate Series based on type and coerce into matrices. Needs to handle a lot of exceptional cases. """ if columns is not None: from pandas.core.series import Series arrays = Series(data, index=columns, dtype=object) data_...	[ "def", "init_dict", "(", "data", ",", "index", ",", "columns", ",", "dtype", "=", "None", ")", ":", "if", "columns", "is", "not", "None", ":", "from", "pandas", ".", "core", ".", "series", "import", "Series", "arrays", "=", "Series", "(", "data", ","...	38.810811	16.378378
def sid(self, spec): """Convert the given search specifier into a search-id (sid).""" if spec.startswith('@'): index = int(spec[1:]) jobs = self.service.jobs.list() if index < len(jobs): return jobs[index].sid return spec	[ "def", "sid", "(", "self", ",", "spec", ")", ":", "if", "spec", ".", "startswith", "(", "'@'", ")", ":", "index", "=", "int", "(", "spec", "[", "1", ":", "]", ")", "jobs", "=", "self", ".", "service", ".", "jobs", ".", "list", "(", ")", "if",...	36.25	8.5
def start(self): """ Starts the Service. :Exceptions: - WebDriverException : Raised either when it can't start the service or when it can't connect to the service """ try: cmd = [self.path] cmd.extend(self.command_line_args()) ...	[ "def", "start", "(", "self", ")", ":", "try", ":", "cmd", "=", "[", "self", ".", "path", "]", "cmd", ".", "extend", "(", "self", ".", "command_line_args", "(", ")", ")", "self", ".", "process", "=", "subprocess", ".", "Popen", "(", "cmd", ",", "e...	40.136364	19.5
def _update_redundancy_routers(self, context, updated_router, update_specification, requested_ha_settings, updated_router_db, gateway_changed): """To be called in update_router() AFTER router has been updated in DB. """ ...	[ "def", "_update_redundancy_routers", "(", "self", ",", "context", ",", "updated_router", ",", "update_specification", ",", "requested_ha_settings", ",", "updated_router_db", ",", "gateway_changed", ")", ":", "router_requested", "=", "update_specification", "[", "'router'"...	55.988889	20.222222
def _partition_tasks(worker): """ Takes a worker and sorts out tasks based on their status. Still_pending_not_ext is only used to get upstream_failure, upstream_missing_dependency and run_by_other_worker """ task_history = worker._add_task_history pending_tasks = {task for(task, status, ext) in ...	[ "def", "_partition_tasks", "(", "worker", ")", ":", "task_history", "=", "worker", ".", "_add_task_history", "pending_tasks", "=", "{", "task", "for", "(", "task", ",", "status", ",", "ext", ")", "in", "task_history", "if", "status", "==", "'PENDING'", "}", ...	69.28	36.8
def get_port_profile_for_intf_input_rbridge_id(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_port_profile_for_intf = ET.Element("get_port_profile_for_intf") config = get_port_profile_for_intf input = ET.SubElement(get_port_profile_for_intf,...	[ "def", "get_port_profile_for_intf_input_rbridge_id", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "get_port_profile_for_intf", "=", "ET", ".", "Element", "(", "\"get_port_profile_for_intf\"", ")", "co...	43	14.916667
def _schedule_sending_init_updates(self): """Setup timer for sending best-paths for all other address-families that qualify. Setup timer for sending initial updates to peer. """ def _enqueue_non_rtc_init_updates(): LOG.debug('Scheduled queuing of initial Non-RTC UPD...	[ "def", "_schedule_sending_init_updates", "(", "self", ")", ":", "def", "_enqueue_non_rtc_init_updates", "(", ")", ":", "LOG", ".", "debug", "(", "'Scheduled queuing of initial Non-RTC UPDATEs'", ")", "tm", "=", "self", ".", "_core_service", ".", "table_manager", "self...	41.2	15.16
def split(self, string, maxsplit=0): """Split string by the occurrences of pattern.""" splitlist = [] state = _State(string, 0, sys.maxint, self.flags) n = 0 last = state.start while not maxsplit or n < maxsplit: state.reset() state.string_position...	[ "def", "split", "(", "self", ",", "string", ",", "maxsplit", "=", "0", ")", ":", "splitlist", "=", "[", "]", "state", "=", "_State", "(", "string", ",", "0", ",", "sys", ".", "maxint", ",", "self", ".", "flags", ")", "n", "=", "0", "last", "=",...	40.444444	14.185185
def _get_format(self, token): """ Returns a QTextCharFormat for token or None. """ if token in self._formats: return self._formats[token] result = self._get_format_from_style(token, self._style) self._formats[token] = result return result	[ "def", "_get_format", "(", "self", ",", "token", ")", ":", "if", "token", "in", "self", ".", "_formats", ":", "return", "self", ".", "_formats", "[", "token", "]", "result", "=", "self", ".", "_get_format_from_style", "(", "token", ",", "self", ".", "_...	29.1	14.4
def connect(self, opt): """This sets up the tokens we expect to see in a way that hvac also expects.""" if not self._kwargs['verify']: LOG.warning('Skipping SSL Validation!') self.version = self.server_version() self.token = self.init_token() my_token = self....	[ "def", "connect", "(", "self", ",", "opt", ")", ":", "if", "not", "self", ".", "_kwargs", "[", "'verify'", "]", ":", "LOG", ".", "warning", "(", "'Skipping SSL Validation!'", ")", "self", ".", "version", "=", "self", ".", "server_version", "(", ")", "s...	35.078947	16.763158
def clique(graph, id): """ Returns the largest possible clique for the node with given id. """ clique = [id] for n in graph.nodes: friend = True for id in clique: if n.id == id or graph.edge(n.id, id) == None: friend = False break ...	[ "def", "clique", "(", "graph", ",", "id", ")", ":", "clique", "=", "[", "id", "]", "for", "n", "in", "graph", ".", "nodes", ":", "friend", "=", "True", "for", "id", "in", "clique", ":", "if", "n", ".", "id", "==", "id", "or", "graph", ".", "e...	23.4375	18.6875
def num_to_var_int(x): """ (bitcoin-specific): convert an integer into a variable-length integer """ x = int(x) if x < 253: return from_int_to_byte(x) elif x < 65536: return from_int_to_byte(253) + encode(x, 256, 2)[::-1] elif x < 4294967296: return from_int_to_byte...	[ "def", "num_to_var_int", "(", "x", ")", ":", "x", "=", "int", "(", "x", ")", "if", "x", "<", "253", ":", "return", "from_int_to_byte", "(", "x", ")", "elif", "x", "<", "65536", ":", "return", "from_int_to_byte", "(", "253", ")", "+", "encode", "(",...	25.625	22.625
def delete_saved_sandbox(self, context, delete_saved_apps, cancellation_context): """ Delete a saved sandbox, along with any vms associated with it :param ResourceCommandContext context: :param list[DeleteSavedApp] delete_saved_apps: :param CancellationContext cancellation_contex...	[ "def", "delete_saved_sandbox", "(", "self", ",", "context", ",", "delete_saved_apps", ",", "cancellation_context", ")", ":", "connection", "=", "self", ".", "command_wrapper", ".", "execute_command_with_connection", "(", "context", ",", "self", ".", "delete_saved_sand...	60.461538	24.923077
def datasets(self): """A mapping from dataset numbers to datasets in this list""" return {key: val['ds'] for key, val in six.iteritems( self._get_ds_descriptions(self.array_info(ds_description=['ds'])))}	[ "def", "datasets", "(", "self", ")", ":", "return", "{", "key", ":", "val", "[", "'ds'", "]", "for", "key", ",", "val", "in", "six", ".", "iteritems", "(", "self", ".", "_get_ds_descriptions", "(", "self", ".", "array_info", "(", "ds_description", "=",...	57	20.25
def make_var_string(string): """ Make a var-string (a var-int with the length, concatenated with the data) Return the hex-encoded string """ s = None if isinstance(string, str) and re.match('^[0-9a-fA-F]*$', string): # convert from hex to bin, safely s = binascii.unhexlify(string...	[ "def", "make_var_string", "(", "string", ")", ":", "s", "=", "None", "if", "isinstance", "(", "string", ",", "str", ")", "and", "re", ".", "match", "(", "'^[0-9a-fA-F]*$'", ",", "string", ")", ":", "# convert from hex to bin, safely", "s", "=", "binascii", ...	29.714286	16
def mid_point(self): ''' Returns the midpoint of the arc as a 1x2 numpy array. ''' midpoint_angle = self.from_angle + self.sign*self.length_degrees() / 2 return self.angle_as_point(midpoint_angle)	[ "def", "mid_point", "(", "self", ")", ":", "midpoint_angle", "=", "self", ".", "from_angle", "+", "self", ".", "sign", "*", "self", ".", "length_degrees", "(", ")", "/", "2", "return", "self", ".", "angle_as_point", "(", "midpoint_angle", ")" ]	38.5	24.5
def _http_get(self, url, query): """ Performs the HTTP GET Request. """ if not self.authorization_as_header: query.update({'access_token': self.access_token}) response = None self._normalize_query(query) kwargs = { 'params': query, ...	[ "def", "_http_get", "(", "self", ",", "url", ",", "query", ")", ":", "if", "not", "self", ".", "authorization_as_header", ":", "query", ".", "update", "(", "{", "'access_token'", ":", "self", ".", "access_token", "}", ")", "response", "=", "None", "self"...	22.137931	19.793103
def DeriveReportKey(cls, root_key, report_id, sent_timestamp): """Derive a standard one time use report signing key. The standard method is HMAC-SHA256(root_key, MAGIC_NUMBER \|\| report_id \|\| sent_timestamp) where MAGIC_NUMBER is 0x00000002 and all integers are in little endian. """ ...	[ "def", "DeriveReportKey", "(", "cls", ",", "root_key", ",", "report_id", ",", "sent_timestamp", ")", ":", "signed_data", "=", "struct", ".", "pack", "(", "\"<LLL\"", ",", "AuthProvider", ".", "ReportKeyMagic", ",", "report_id", ",", "sent_timestamp", ")", "hma...	47.090909	29.636364
def args(self): """Create args from function parameters.""" params = self.parameters args = OrderedDict() # This will be overridden if the command explicitly defines an # arg named help. args['help'] = HelpArg(command=self) normalize_name = self.normalize_name ...	[ "def", "args", "(", "self", ")", ":", "params", "=", "self", ".", "parameters", "args", "=", "OrderedDict", "(", ")", "# This will be overridden if the command explicitly defines an", "# arg named help.", "args", "[", "'help'", "]", "=", "HelpArg", "(", "command", ...	35.655556	15.244444
def _parse_sequences(ilines, expect_qlen): """Parse the sequences in the current block. Sequence looks like: $3=227(209): >gi\|15606894\|ref\|NP_214275.1\| {\|2(244)\|<Aquificae(B)>}DNA polymerase III gamma subunit [Aquifex aeolicus VF5] >gi\|2984127\|gb\|AAC07663.1\| DNA polymerase III gamma subunit [Aquifex ...	[ "def", "_parse_sequences", "(", "ilines", ",", "expect_qlen", ")", ":", "while", "True", ":", "first", "=", "next", "(", "ilines", ")", "if", "first", ".", "startswith", "(", "'_'", ")", "and", "first", ".", "endswith", "(", "'].'", ")", ":", "# End of...	39.8125	21.921875
def extract_fields(d, fields, delimiter='\|'): """ get values out of an object ``d`` for saving to a csv """ rd = {} for f in fields: v = d.get(f, None) if isinstance(v, (str, unicode)): v = v.encode('utf8') elif isinstance(v, list): v = delimiter.join(v) ...	[ "def", "extract_fields", "(", "d", ",", "fields", ",", "delimiter", "=", "'\|'", ")", ":", "rd", "=", "{", "}", "for", "f", "in", "fields", ":", "v", "=", "d", ".", "get", "(", "f", ",", "None", ")", "if", "isinstance", "(", "v", ",", "(", "st...	30.545455	12.818182
def predict(self, h=5, oos_data=None, intervals=False, **kwargs): """ Makes forecast with the estimated model Parameters ---------- h : int (default : 5) How many steps ahead would you like to forecast? oos_data : pd.DataFrame Data for the variables to b...	[ "def", "predict", "(", "self", ",", "h", "=", "5", ",", "oos_data", "=", "None", ",", "intervals", "=", "False", ",", "", "", "kwargs", ")", ":", "if", "self", ".", "latent_variables", ".", "estimated", "is", "False", ":", "raise", "Exception", "("...	47.88172	30.043011
def get(path): """Read an object from file""" try: import cPickle as pickle except: import pickle with open(path, 'rb') as file: return pickle.load(file)	[ "def", "get", "(", "path", ")", ":", "try", ":", "import", "cPickle", "as", "pickle", "except", ":", "import", "pickle", "with", "open", "(", "path", ",", "'rb'", ")", "as", "file", ":", "return", "pickle", ".", "load", "(", "file", ")" ]	20.666667	18.666667
def variable_length_to_fixed_length_categorical( self, left_edge=4, right_edge=4, max_length=15): """ Encode variable-length sequences using a fixed-length encoding designed for preserving the anchor positions of class I peptides. The sequences must be of length at l...	[ "def", "variable_length_to_fixed_length_categorical", "(", "self", ",", "left_edge", "=", "4", ",", "right_edge", "=", "4", ",", "max_length", "=", "15", ")", ":", "cache_key", "=", "(", "\"fixed_length_categorical\"", ",", "left_edge", ",", "right_edge", ",", "...	36.085714	19.057143
def to_list_of_dicts(self, kwargs): """ Convert the :class:`ParameterSet` to a list of the dictionary representation of each :class:`Parameter` :return: list of dicts """ if kwargs: return self.filter(kwargs).to_list_of_dicts() return [param.to_di...	[ "def", "to_list_of_dicts", "(", "self", ",", "", "", "kwargs", ")", ":", "if", "kwargs", ":", "return", "self", ".", "filter", "(", "", "", "kwargs", ")", ".", "to_list_of_dicts", "(", ")", "return", "[", "param", ".", "to_dict", "(", ")", "for",...	34.2	16.2
def _get_keys_defdict(self): '''Get the keys and the default dictionary of the given function's arguments ''' # inspect argspecs argspec = inspect.getargspec(self.func) keys, defvals = argspec.args, argspec.defaults # convert to (list_of_argkeys, dict_of_default_...	[ "def", "_get_keys_defdict", "(", "self", ")", ":", "# inspect argspecs", "argspec", "=", "inspect", ".", "getargspec", "(", "self", ".", "func", ")", "keys", ",", "defvals", "=", "argspec", ".", "args", ",", "argspec", ".", "defaults", "# convert to (list_of_a...	32.222222	16.777778
def is_xml(text): """ Helper function. Lightweight test if response is an XML doc """ # BOM_UTF8 is an UTF-8 byte order mark which may precede the XML from an Exchange server bom_len = len(BOM_UTF8) if text[:bom_len] == BOM_UTF8: return text[bom_len:bom_len + 5] == b'<?xml' return te...	[ "def", "is_xml", "(", "text", ")", ":", "# BOM_UTF8 is an UTF-8 byte order mark which may precede the XML from an Exchange server", "bom_len", "=", "len", "(", "BOM_UTF8", ")", "if", "text", "[", ":", "bom_len", "]", "==", "BOM_UTF8", ":", "return", "text", "[", "bo...	36.666667	15.333333
def get_samples(self, sample_count): """ Fetch a number of samples from self.wave_cache Args: sample_count (int): Number of samples to fetch Returns: ndarray """ if self.amplitude.value <= 0: return None # Build samples by rolling the per...	[ "def", "get_samples", "(", "self", ",", "sample_count", ")", ":", "if", "self", ".", "amplitude", ".", "value", "<=", "0", ":", "return", "None", "# Build samples by rolling the period cache through the buffer", "rolled_array", "=", "numpy", ".", "roll", "(", "sel...	44.48	18.72
def server(self, parsed_args): """Server.""" server_args = vars(self) server_args['bind_addr'] = parsed_args['bind_addr'] if parsed_args.max is not None: server_args['maxthreads'] = parsed_args.max if parsed_args.numthreads is not None: server_args['minthr...	[ "def", "server", "(", "self", ",", "parsed_args", ")", ":", "server_args", "=", "vars", "(", "self", ")", "server_args", "[", "'bind_addr'", "]", "=", "parsed_args", "[", "'bind_addr'", "]", "if", "parsed_args", ".", "max", "is", "not", "None", ":", "ser...	43.444444	9.777778
def get_work_units(self, work_spec_name, work_unit_keys=None, state=None, limit=None, start=None): '''Get (key, value) pairs for work units. If `state` is not :const:`None`, then it should be one of the string state constants, and this function will return a list ...	[ "def", "get_work_units", "(", "self", ",", "work_spec_name", ",", "work_unit_keys", "=", "None", ",", "state", "=", "None", ",", "limit", "=", "None", ",", "start", "=", "None", ")", ":", "if", "work_unit_keys", "is", "not", "None", ":", "raise", "NotImp...	49.019231	20.788462
def first_consumed_mesh(self): """The first consumed mesh. :return: the first consumed mesh :rtype: knittingpattern.Mesh.Mesh :raises IndexError: if no mesh is consumed .. seealso:: :attr:`number_of_consumed_meshes` """ for instruction in self.instructions: ...	[ "def", "first_consumed_mesh", "(", "self", ")", ":", "for", "instruction", "in", "self", ".", "instructions", ":", "if", "instruction", ".", "consumes_meshes", "(", ")", ":", "return", "instruction", ".", "first_consumed_mesh", "raise", "IndexError", "(", "\"{} ...	35.923077	12.384615
def _makeTags(tagStr, xml): """Internal helper to construct opening and closing tag expressions, given a tag name""" if isinstance(tagStr,basestring): resname = tagStr tagStr = Keyword(tagStr, caseless=not xml) else: resname = tagStr.name tagAttrName = Word(alphas,alphan...	[ "def", "_makeTags", "(", "tagStr", ",", "xml", ")", ":", "if", "isinstance", "(", "tagStr", ",", "basestring", ")", ":", "resname", "=", "tagStr", "tagStr", "=", "Keyword", "(", "tagStr", ",", "caseless", "=", "not", "xml", ")", "else", ":", "resname",...	56.25	31.642857
def downgrade(): """alexm: i believe this method is never called""" with op.batch_alter_table(t2_name) as batch_op: batch_op.drop_column('do_not_use') with op.batch_alter_table(t1_name) as batch_op: batch_op.drop_column('enabled')	[ "def", "downgrade", "(", ")", ":", "with", "op", ".", "batch_alter_table", "(", "t2_name", ")", "as", "batch_op", ":", "batch_op", ".", "drop_column", "(", "'do_not_use'", ")", "with", "op", ".", "batch_alter_table", "(", "t1_name", ")", "as", "batch_op", ...	36.142857	12.714286
def extract_energy(rate, sig): """ Extracts the energy of frames. """ mfcc = python_speech_features.mfcc(sig, rate, appendEnergy=True) energy_row_vec = mfcc[:, 0] energy_col_vec = energy_row_vec[:, np.newaxis] return energy_col_vec	[ "def", "extract_energy", "(", "rate", ",", "sig", ")", ":", "mfcc", "=", "python_speech_features", ".", "mfcc", "(", "sig", ",", "rate", ",", "appendEnergy", "=", "True", ")", "energy_row_vec", "=", "mfcc", "[", ":", ",", "0", "]", "energy_col_vec", "=",...	35.142857	16
def list_all_shipping_methods(cls, **kwargs): """List ShippingMethods Return a list of ShippingMethods This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> thread = api.list_all_shipping_methods(async=True) ...	[ "def", "list_all_shipping_methods", "(", "cls", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async'", ")", ":", "return", "cls", ".", "_list_all_shipping_methods_with_http_info...	38.478261	15.173913
def target(self): """ Target the current space for any forthcoming Cloud Foundry operations. """ # MAINT: I don't like this, but will deal later os.environ['PREDIX_SPACE_GUID'] = self.guid os.environ['PREDIX_SPACE_NAME'] = self.name os.environ['PREDIX_ORGA...	[ "def", "target", "(", "self", ")", ":", "# MAINT: I don't like this, but will deal later", "os", ".", "environ", "[", "'PREDIX_SPACE_GUID'", "]", "=", "self", ".", "guid", "os", ".", "environ", "[", "'PREDIX_SPACE_NAME'", "]", "=", "self", ".", "name", "os", "...	40.5	15.1
def save(self): """ Creates / updates a row. This is a blind insert call. All validation and cleaning needs to happen prior to calling this. """ if self.instance is None: raise CQLEngineException("DML Query intance attribute is None") assert ty...	[ "def", "save", "(", "self", ")", ":", "if", "self", ".", "instance", "is", "None", ":", "raise", "CQLEngineException", "(", "\"DML Query intance attribute is None\"", ")", "assert", "type", "(", "self", ".", "instance", ")", "==", "self", ".", "model", "null...	50.738095	23.261905
def press(self, coordinate, success=None): """Success must be given as a tuple of a (coordinate, timeout). Use (coordinate,) if you want to use the default timeout.""" if isinstance(coordinate, WebElement): coordinate.click() else: self.get_element(coordinate).cli...	[ "def", "press", "(", "self", ",", "coordinate", ",", "success", "=", "None", ")", ":", "if", "isinstance", "(", "coordinate", ",", "WebElement", ")", ":", "coordinate", ".", "click", "(", ")", "else", ":", "self", ".", "get_element", "(", "coordinate", ...	43.888889	7.555556
def srem(self, key, member, members): """Remove one or more members from a set.""" return self.execute(b'SREM', key, member, members)	[ "def", "srem", "(", "self", ",", "key", ",", "member", ",", "", "members", ")", ":", "return", "self", ".", "execute", "(", "b'SREM'", ",", "key", ",", "member", ",", "", "members", ")" ]	49.666667	7
def get_data_or_404(model, instance_id, kind=''): """Wrap `get_data`, when missing data, raise BadRequest. """ data = get_data(model, instance_id, kind) if not data: return abort(404) return data	[ "def", "get_data_or_404", "(", "model", ",", "instance_id", ",", "kind", "=", "''", ")", ":", "data", "=", "get_data", "(", "model", ",", "instance_id", ",", "kind", ")", "if", "not", "data", ":", "return", "abort", "(", "404", ")", "return", "data" ]	24.111111	17.555556
def cfg_(self,cfg=None): """ Getter/Setter of configuration data. This can be used to update and modify the configuration file on the system by new applications. """ if cfg is None: cfg = self._cfg else: self._cfg = cfg self.overlay...	[ "def", "cfg_", "(", "self", ",", "cfg", "=", "None", ")", ":", "if", "cfg", "is", "None", ":", "cfg", "=", "self", ".", "_cfg", "else", ":", "self", ".", "_cfg", "=", "cfg", "self", ".", "overlay_load", "(", ")", "return", "cfg" ]	27.916667	14.916667
def Extra(self): """ Returns any `V`, `P`, `DOI` or `misc` values as a string. These are all the values not returned by [ID()](#metaknowledge.citation.Citation.ID), they are separated by `' ,'`. # Returns `str` > A string containing the data not in the ID of the `Citation`. ...	[ "def", "Extra", "(", "self", ")", ":", "extraTags", "=", "[", "'V'", ",", "'P'", ",", "'DOI'", ",", "'misc'", "]", "retVal", "=", "\"\"", "for", "tag", "in", "extraTags", ":", "if", "getattr", "(", "self", ",", "tag", ")", ":", "retVal", "+=", "g...	31.210526	25.526316
def update(self, **kwargs): """ Overrides update to concatenate streamed data up to defined length. """ data = kwargs.get('data') if data is not None: if (util.pd and isinstance(data, util.pd.DataFrame) and list(data.columns) != list(self.data.columns)...	[ "def", "update", "(", "self", ",", "", "", "kwargs", ")", ":", "data", "=", "kwargs", ".", "get", "(", "'data'", ")", "if", "data", "is", "not", "None", ":", "if", "(", "util", ".", "pd", "and", "isinstance", "(", "data", ",", "util", ".", "p...	40	12.923077
def exit(self): """Overwrite the exit method to close threads.""" if self._thread is not None: self._thread.stop() # Call the father class super(Plugin, self).exit()	[ "def", "exit", "(", "self", ")", ":", "if", "self", ".", "_thread", "is", "not", "None", ":", "self", ".", "_thread", ".", "stop", "(", ")", "# Call the father class", "super", "(", "Plugin", ",", "self", ")", ".", "exit", "(", ")" ]	34	8.833333
def is_title(p): """ Certain p tags are denoted as ``Title`` tags. This function will return True if the passed in p tag is considered a title. """ w_namespace = get_namespace(p, 'w') styles = p.xpath('.//w:pStyle', namespaces=p.nsmap) if len(styles) == 0: return False style = st...	[ "def", "is_title", "(", "p", ")", ":", "w_namespace", "=", "get_namespace", "(", "p", ",", "'w'", ")", "styles", "=", "p", ".", "xpath", "(", "'.//w:pStyle'", ",", "namespaces", "=", "p", ".", "nsmap", ")", "if", "len", "(", "styles", ")", "==", "0...	33.818182	14.363636
def _fsic_queuing_calc(fsic1, fsic2): """ We set the lower counter between two same instance ids. If an instance_id exists in one fsic but not the other we want to give that counter a value of 0. :param fsic1: dictionary containing (instance_id, counter) pairs :param fsic2: dictionary containing (i...	[ "def", "_fsic_queuing_calc", "(", "fsic1", ",", "fsic2", ")", ":", "return", "{", "instance", ":", "fsic2", ".", "get", "(", "instance", ",", "0", ")", "for", "instance", ",", "counter", "in", "six", ".", "iteritems", "(", "fsic1", ")", "if", "fsic2", ...	56	31.2
def getDomainFromUrl(self, url): """ Extracting the domain from the URL. :return: domain as a string. """ try: domain = re.findall( self.domainRegexp, url )[0] except Exception, e: errMsg = "ERROR. Something happened when tryin...	[ "def", "getDomainFromUrl", "(", "self", ",", "url", ")", ":", "try", ":", "domain", "=", "re", ".", "findall", "(", "self", ".", "domainRegexp", ",", "url", ")", "[", "0", "]", "except", "Exception", ",", "e", ":", "errMsg", "=", "\"ERROR. Something ha...	43	25.153846
def _convert_for_reindex(self, key, axis=None): """ Transform a list of keys into a new array ready to be used as axis of the object we return (e.g. including NaNs). Parameters ---------- key : list-like Target labels axis: int Where the i...	[ "def", "_convert_for_reindex", "(", "self", ",", "key", ",", "axis", "=", "None", ")", ":", "if", "axis", "is", "None", ":", "axis", "=", "self", ".", "axis", "or", "0", "labels", "=", "self", ".", "obj", ".", "_get_axis", "(", "axis", ")", "if", ...	28.666667	18.142857
def _ep_active(self): """Both ends of the Endpoint have become active.""" LOG.debug("Connection is up") if self._handler: with self._callback_lock: self._handler.connection_active(self)	[ "def", "_ep_active", "(", "self", ")", ":", "LOG", ".", "debug", "(", "\"Connection is up\"", ")", "if", "self", ".", "_handler", ":", "with", "self", ".", "_callback_lock", ":", "self", ".", "_handler", ".", "connection_active", "(", "self", ")" ]	38.666667	8.833333
def FileHashIndexQuery(self, subject, target_prefix, limit=100): """Search the index for matches starting with target_prefix. Args: subject: The index to use. Should be a urn that points to the sha256 namespace. target_prefix: The prefix to match against the index. limit: Either a...	[ "def", "FileHashIndexQuery", "(", "self", ",", "subject", ",", "target_prefix", ",", "limit", "=", "100", ")", ":", "if", "isinstance", "(", "limit", ",", "(", "tuple", ",", "list", ")", ")", ":", "start", ",", "length", "=", "limit", "# pylint: disable=...	32.034483	24.068966

def geo_max_distance(left, right): """Returns the 2-dimensional maximum distance between two geometries in projected units. If g1 and g2 is the same geometry the function will return the distance between the two vertices most far from each other in that geometry Parameters ---------- left :...

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27.294118

20.470588

def watch(key, recurse=False, profile=None, timeout=0, index=None, **kwargs): ''' .. versionadded:: 2016.3.0 Makes a best effort to watch for a key or tree change in etcd. Returns a dict containing the new key value ( or None if the key was deleted ), the modifiedIndex of the key, whether the key c...

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38.956522

29.913043

def to_array(self): """ Serializes this KeyboardButton to a dictionary. :return: dictionary representation of this object. :rtype: dict """ array = super(KeyboardButton, self).to_array() array['text'] = u(self.text) # py2: type unicode, py3: type str if...

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37.8

20.466667

def __get_button_events(self, state, timeval=None): """Get the button events from xinput.""" changed_buttons = self.__detect_button_events(state) events = self.__emulate_buttons(changed_buttons, timeval) return events

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49

15

def merge_lvm_data(primary, secondary, name_key): """ Returns a dictionary containing the set of data from primary and secondary where values in primary will always be returned if present, and values in secondary will only be returned if not present in primary, or if the value in primary is `None`. ...

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39.217391

23.913043

def _GetRealImagArray(Array): """ Returns the real and imaginary components of each element in an array and returns them in 2 resulting arrays. Parameters ---------- Array : ndarray Input array Returns ------- RealArray : ndarray The real components of the input array ...

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27.684211

21.263158

def convert_string_to_type(string_value): """Converts a string into a type or class :param string_value: the string to be converted, e.g. "int" :return: The type derived from string_value, e.g. int """ # If the parameter is already a type, return it if string_value in ['None', type(None).__name...

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32.631579

15.368421

def _create_pileup(bam_file, data, out_base, background): """Create pileup calls in the regions of interest for hg19 -> GRCh37 chromosome mapping. """ out_file = "%s-mpileup.txt" % out_base if not utils.file_exists(out_file): with file_transaction(data, out_file) as tx_out_file: back...

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64.434783

25.521739

def gauss_jordan(A, x, b): """Linear equation system Ax=b by Gauss-Jordan :param A: n by m matrix :param x: table of size n :param b: table of size m :modifies: x will contain solution if any :returns int: 0 if no solution, 1 if solution unique, 2 otherwise :co...

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28.625

13.65625

def dependencies_order_of_build(target_contract, dependencies_map): """ Return an ordered list of contracts that is sufficient to successfully deploy the target contract. Note: This function assumes that the `dependencies_map` is an acyclic graph. """ if not dependencies_map: return...

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31.741935

21.387097

def __remove_obsolete_metadata(self): """ Removes obsolete entries from the metadata of all stored routines. """ clean = {} for key, _ in self._source_file_names.items(): if key in self._pystratum_metadata: clean[key] = self._pystratum_metadata[key] ...

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35

13.8

def config_present(name): ''' Ensure a specific configuration line exists in the running config name config line to set Examples: .. code-block:: yaml add snmp group: onyx.config_present: - names: - snmp-server community randoSNMPstringHERE gro...

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27.333333

22.784314

def update_todo_menu(self): """Update todo list menu""" editorstack = self.get_current_editorstack() results = editorstack.get_todo_results() self.todo_menu.clear() filename = self.get_current_filename() for text, line0 in results: icon = ima.icon('todo...

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45.75

11.916667

def __pop_params(self, tid): """ Forgets the arguments tuple for the last call to the hooked function from this thread. @type tid: int @param tid: Thread global ID. """ stack = self.__paramStack[tid] stack.pop() if not stack: del self...

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27.25

13.916667

def api_path_map(self): """Cached dict of api_path: func.""" if self._api_path_cache is None: self._api_path_cache = { api_path: func for api_path, func in api_endpoints(self) } return self._api_path_cache

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32.555556

7.888889

def get_apex(self, lat, height=None): """ Calculate apex height Parameters ----------- lat : (float) Latitude in degrees height : (float or NoneType) Height above the surface of the earth in km or NoneType to use reference height (default=None...

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28.416667

17.75

def load_xml_db(self): """Load the Lutron database from the server.""" import urllib.request xmlfile = urllib.request.urlopen('http://' + self._host + '/DbXmlInfo.xml') xml_db = xmlfile.read() xmlfile.close() _LOGGER.info("Loaded xml db") parser = LutronXmlDbParser(lutron=self, xml_db_str=...

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30.5

20.555556

def start_roles(self, service_name, deployment_name, role_names): ''' Starts the specified virtual machines. service_name: The name of the service. deployment_name: The name of the deployment. role_names: The names of the roles, as an enumerab...

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39.388889

19.277778

def check_node_position( cls, parent_id, position, on_same_branch, db_session=None, *args, **kwargs ): """ Checks if node position for given parent is valid, raises exception if this is not the case :param parent_id: :param position: :param on_same_branch: in...

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38.416667

20.25

def _proposal_params(self, state): """ Proposal parameters Calculate parameters needed for the proposal. Inputs : state : x : the present sample, the place to linearize around f : f(x), function value at x J : ...

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28.659091

16.159091

def list_dir(self, context): """Return a listing of all of the functions in this context including builtins. Args: context (object): The context to print a directory for. Returns: str """ doc = inspect.getdoc(context) listing = "" listi...

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27.240741

20.537037

def encode(self, b64=False): """Encode the payload for transmission.""" encoded_payload = b'' for pkt in self.packets: encoded_packet = pkt.encode(b64=b64) packet_len = len(encoded_packet) if b64: encoded_payload += str(packet_len).encode('utf-...

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41.05

13.15

def get_assessment_parts_by_ids(self, assessment_part_ids): """Gets an ``AssessmentPartList`` corresponding to the given ``IdList``. arg: assessment_part_ids (osid.id.IdList): the list of ``Ids`` to retrieve return: (osid.assessment.authoring.AssessmentPartList) - the ...

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49.323529

17.941176

def GetMACBRepresentation(self, event): """Retrieves the MACB representation. Args: event (EventObject): event. Returns: str: MACB representation. """ data_type = getattr(event, 'data_type', None) if not data_type: return '....' # The filestat parser is somewhat limited....

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32.514286

15.514286

def fire_event(self, event_name, service_name, default=None): """ Fire a data_ready, data_lost, start, or stop event on a given service. """ service = self.get_service(service_name) callbacks = service.get(event_name, default) if not callbacks: return ...

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38.933333

12.533333

def help_center_section_articles(self, id, locale=None, **kwargs): "https://developer.zendesk.com/rest_api/docs/help_center/articles#list-articles" api_path = "/api/v2/help_center/sections/{id}/articles.json" api_path = api_path.format(id=id) if locale: api_opt_path = "/api/v...

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59.25

24.75

def register(self, func): """ Register function to templates. """ if callable(func): self.functions[func.__name__] = func return func

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33

11.6

def delete(key, service=None, profile=None): # pylint: disable=W0613 ''' Get a value from the etcd service ''' client = _get_conn(profile) try: client.delete(key) return True except Exception: return False

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24.5

21.3

def _try_pydatetime(x): """Try to convert to pandas objects to datetimes. Plotly doesn't know how to handle them. """ try: # for datetimeindex x = [y.isoformat() for y in x.to_pydatetime()] except AttributeError: pass try: # for generic series x = [y.isof...

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24.75

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def get_item_metadata(self, handle): """Return dictionary containing all metadata associated with handle. In other words all the metadata added using the ``add_item_metadata`` method. :param handle: handle for accessing an item before the dataset is frozen ...

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def register_handler(self, callable_obj, entrypoint, methods=('GET',)): """Register a handler callable to a specific route. Args: entrypoint (str): The uri relative path. methods (tuple): A tuple of valid method strings. callable_obj (callable): The callable object. ...

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def license(self, license_id: str, token: dict = None, prot: str = "https") -> dict: """Get details about a specific license. :param str token: API auth token :param str license_id: license UUID :param str prot: https [DEFAULT] or http (use it only for dev and tracking needs). ...

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def build_pos_grid(start, end, nstep, mesh=False): """ Return a grid of positions starting at X,Y given by 'start', and ending at X,Y given by 'end'. The grid will be completely filled in X and Y by every 'step' interval. """ # Build X and Y arrays dx = end[0] - start[0] if dx < 0: ...

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30

19.84

def _check_all_devices_in_sync(self): '''Wait until all devices have failover status of 'In Sync'. :raises: UnexpectedClusterState ''' if len(self._get_devices_by_failover_status('In Sync')) != \ len(self.devices): msg = "Expected all devices in group to hav...

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def create_user(self, login=None, password=None, user_name=None, envs=[], query='/users/'): """ `login` - Login or username for user `password` - Plain text password for user `user_name` - Full name of user Create user in specified environments """ login = login....

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def process_docstring(app, what, name, obj, options, lines): """Enable markdown syntax in docstrings""" markdown = "\n".join(lines) # ast = cm_parser.parse(markdown) # html = cm_renderer.render(ast) rest = m2r(markdown) rest.replace("\r\n", "\n") del lines[:] lines.extend(rest.spl...

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26.5

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def read(self, domain, type_name, search_command, body=None): """Read entry in ThreatConnect Data Store Args: domain (string): One of 'local', 'organization', or 'system'. type_name (string): This is a free form index type name. The ThreatConnect API will use thi...

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47.272727

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def __parts_and_divisions(self): """ The parts and divisions directly part of this element. """ from .division import Division from .part import Part from .placeholder_part import PlaceholderPart text = self.node.text if text: stripped_text =...

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31.24

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def get_filehandle(self): """Get HDF4 filehandle.""" if os.path.exists(self.filename): self.filehandle = SD(self.filename, SDC.READ) logger.debug("Loading dataset {}".format(self.filename)) else: raise IOError("Path {} does not exist.".format(self.filename))

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44.571429

17.428571

def get_user(self, user_name, raw=False): """ Get a dictionary or object with info about the given user from the Hacker News API. Will raise an requests.HTTPError if we got a non-200 response back. Response parameters: "id' -> The user's unique username. Case-sensiti...

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def table(self, data2=None, dense=True): """ Compute the counts of values appearing in a column, or co-occurence counts between two columns. :param H2OFrame data2: An optional single column to aggregate counts by. :param bool dense: If True (default) then use dense representation, which...

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56.916667

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def build_current_graph(): """ Read current state of SQL items from the current project state. Returns: (SQLStateGraph) Current project state graph. """ graph = SQLStateGraph() for app_name, config in apps.app_configs.items(): try: module = import_module( ...

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31.608696

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def save(self, name, content, max_length=None): """ Saves the given content with the given name using the local storage. If the :attr:`~queued_storage.backends.QueuedStorage.delayed` attribute is ``True`` this will automatically call the :meth:`~queued_storage.backends.QueuedStor...

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41

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def export_data(self): """ Get the results with the modified_data """ result = {} data = self.__original_data__.copy() data.update(self.__modified_data__) for key, value in data.items(): if key in self.__deleted_fields__: continue ...

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27.058824

12.823529

def get_ddG_results(self): """Parse the results from BuildModel and get the delta delta G's. A positive ddG means that the mutation(s) is destabilzing, negative means stabilizing. - highly stabilising (ΔΔG < −1.84 kcal/mol); - stabilising (−1.84 kcal/mol ≤ ΔΔG < −0.92 kcal/mol)...

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39.413793

25.206897

def shortcut( name, target, arguments=None, working_dir=None, description=None, icon_location=None, force=False, backupname=None, makedirs=False, user=None, **kwargs): ''' Create a Windows shortcut If the file already e...

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38.46063

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def wcs_to_axes(w, npix): """Generate a sequence of bin edge vectors corresponding to the axes of a WCS object.""" npix = npix[::-1] x = np.linspace(-(npix[0]) / 2., (npix[0]) / 2., npix[0] + 1) * np.abs(w.wcs.cdelt[0]) y = np.linspace(-(npix[1]) / 2., (npix[1]) / 2., ...

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29.05

22.3

def p_casecontent_condition_single(self, p): 'casecontent_condition : casecontent_condition COMMA expression' p[0] = p[1] + (p[3],) p.set_lineno(0, p.lineno(1))

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45.25

12.75

def debye_E_single(x): """ calculate Debye energy using old fortran routine :params x: Debye x value :return: Debye energy """ # make the function handles both scalar and array if ((x > 0.0) & (x <= 0.1)): result = 1. - 0.375 * x + x * x * \ (0.05 - (5.952380953e-4) * x ...

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34.394737

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def GetConsoleTitle() -> str: """ GetConsoleTitle from Win32. Return str. """ arrayType = ctypes.c_wchar * MAX_PATH values = arrayType() ctypes.windll.kernel32.GetConsoleTitleW(values, MAX_PATH) return values.value

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26.444444

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def init_dict(data, index, columns, dtype=None): """ Segregate Series based on type and coerce into matrices. Needs to handle a lot of exceptional cases. """ if columns is not None: from pandas.core.series import Series arrays = Series(data, index=columns, dtype=object) data_...

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38.810811

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def sid(self, spec): """Convert the given search specifier into a search-id (sid).""" if spec.startswith('@'): index = int(spec[1:]) jobs = self.service.jobs.list() if index < len(jobs): return jobs[index].sid return spec

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36.25

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def start(self): """ Starts the Service. :Exceptions: - WebDriverException : Raised either when it can't start the service or when it can't connect to the service """ try: cmd = [self.path] cmd.extend(self.command_line_args()) ...

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40.136364

19.5

def _update_redundancy_routers(self, context, updated_router, update_specification, requested_ha_settings, updated_router_db, gateway_changed): """To be called in update_router() AFTER router has been updated in DB. """ ...

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55.988889

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def _partition_tasks(worker): """ Takes a worker and sorts out tasks based on their status. Still_pending_not_ext is only used to get upstream_failure, upstream_missing_dependency and run_by_other_worker """ task_history = worker._add_task_history pending_tasks = {task for(task, status, ext) in ...

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69.28

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def get_port_profile_for_intf_input_rbridge_id(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") get_port_profile_for_intf = ET.Element("get_port_profile_for_intf") config = get_port_profile_for_intf input = ET.SubElement(get_port_profile_for_intf,...

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43

14.916667

def _schedule_sending_init_updates(self): """Setup timer for sending best-paths for all other address-families that qualify. Setup timer for sending initial updates to peer. """ def _enqueue_non_rtc_init_updates(): LOG.debug('Scheduled queuing of initial Non-RTC UPD...

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41.2

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def split(self, string, maxsplit=0): """Split string by the occurrences of pattern.""" splitlist = [] state = _State(string, 0, sys.maxint, self.flags) n = 0 last = state.start while not maxsplit or n < maxsplit: state.reset() state.string_position...

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40.444444

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def _get_format(self, token): """ Returns a QTextCharFormat for token or None. """ if token in self._formats: return self._formats[token] result = self._get_format_from_style(token, self._style) self._formats[token] = result return result

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29.1

14.4

def connect(self, opt): """This sets up the tokens we expect to see in a way that hvac also expects.""" if not self._kwargs['verify']: LOG.warning('Skipping SSL Validation!') self.version = self.server_version() self.token = self.init_token() my_token = self....

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35.078947

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def clique(graph, id): """ Returns the largest possible clique for the node with given id. """ clique = [id] for n in graph.nodes: friend = True for id in clique: if n.id == id or graph.edge(n.id, id) == None: friend = False break ...

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23.4375

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def num_to_var_int(x): """ (bitcoin-specific): convert an integer into a variable-length integer """ x = int(x) if x < 253: return from_int_to_byte(x) elif x < 65536: return from_int_to_byte(253) + encode(x, 256, 2)[::-1] elif x < 4294967296: return from_int_to_byte...

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25.625

22.625

def delete_saved_sandbox(self, context, delete_saved_apps, cancellation_context): """ Delete a saved sandbox, along with any vms associated with it :param ResourceCommandContext context: :param list[DeleteSavedApp] delete_saved_apps: :param CancellationContext cancellation_contex...

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60.461538

24.923077

def datasets(self): """A mapping from dataset numbers to datasets in this list""" return {key: val['ds'] for key, val in six.iteritems( self._get_ds_descriptions(self.array_info(ds_description=['ds'])))}

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57

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def make_var_string(string): """ Make a var-string (a var-int with the length, concatenated with the data) Return the hex-encoded string """ s = None if isinstance(string, str) and re.match('^[0-9a-fA-F]*$', string): # convert from hex to bin, safely s = binascii.unhexlify(string...

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29.714286

16

def mid_point(self): ''' Returns the midpoint of the arc as a 1x2 numpy array. ''' midpoint_angle = self.from_angle + self.sign*self.length_degrees() / 2 return self.angle_as_point(midpoint_angle)

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38.5

24.5

def _http_get(self, url, query): """ Performs the HTTP GET Request. """ if not self.authorization_as_header: query.update({'access_token': self.access_token}) response = None self._normalize_query(query) kwargs = { 'params': query, ...

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22.137931

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def DeriveReportKey(cls, root_key, report_id, sent_timestamp): """Derive a standard one time use report signing key. The standard method is HMAC-SHA256(root_key, MAGIC_NUMBER || report_id || sent_timestamp) where MAGIC_NUMBER is 0x00000002 and all integers are in little endian. """ ...

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47.090909

29.636364

def args(self): """Create args from function parameters.""" params = self.parameters args = OrderedDict() # This will be overridden if the command explicitly defines an # arg named help. args['help'] = HelpArg(command=self) normalize_name = self.normalize_name ...

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35.655556

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def _parse_sequences(ilines, expect_qlen): """Parse the sequences in the current block. Sequence looks like: $3=227(209): >gi|15606894|ref|NP_214275.1| {|2(244)|<Aquificae(B)>}DNA polymerase III gamma subunit [Aquifex aeolicus VF5] >gi|2984127|gb|AAC07663.1| DNA polymerase III gamma subunit [Aquifex ...

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39.8125

21.921875

def extract_fields(d, fields, delimiter='|'): """ get values out of an object ``d`` for saving to a csv """ rd = {} for f in fields: v = d.get(f, None) if isinstance(v, (str, unicode)): v = v.encode('utf8') elif isinstance(v, list): v = delimiter.join(v) ...

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30.545455

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def predict(self, h=5, oos_data=None, intervals=False, **kwargs): """ Makes forecast with the estimated model Parameters ---------- h : int (default : 5) How many steps ahead would you like to forecast? oos_data : pd.DataFrame Data for the variables to b...

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def get(path): """Read an object from file""" try: import cPickle as pickle except: import pickle with open(path, 'rb') as file: return pickle.load(file)

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20.666667

18.666667

def variable_length_to_fixed_length_categorical( self, left_edge=4, right_edge=4, max_length=15): """ Encode variable-length sequences using a fixed-length encoding designed for preserving the anchor positions of class I peptides. The sequences must be of length at l...

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def to_list_of_dicts(self, **kwargs): """ Convert the :class:`ParameterSet` to a list of the dictionary representation of each :class:`Parameter` :return: list of dicts """ if kwargs: return self.filter(**kwargs).to_list_of_dicts() return [param.to_di...

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34.2

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def _get_keys_defdict(self): '''Get the keys and the default dictionary of the given function's arguments ''' # inspect argspecs argspec = inspect.getargspec(self.func) keys, defvals = argspec.args, argspec.defaults # convert to (list_of_argkeys, dict_of_default_...

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32.222222

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def is_xml(text): """ Helper function. Lightweight test if response is an XML doc """ # BOM_UTF8 is an UTF-8 byte order mark which may precede the XML from an Exchange server bom_len = len(BOM_UTF8) if text[:bom_len] == BOM_UTF8: return text[bom_len:bom_len + 5] == b'<?xml' return te...

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36.666667

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def get_samples(self, sample_count): """ Fetch a number of samples from self.wave_cache Args: sample_count (int): Number of samples to fetch Returns: ndarray """ if self.amplitude.value <= 0: return None # Build samples by rolling the per...

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44.48

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def server(self, parsed_args): """Server.""" server_args = vars(self) server_args['bind_addr'] = parsed_args['bind_addr'] if parsed_args.max is not None: server_args['maxthreads'] = parsed_args.max if parsed_args.numthreads is not None: server_args['minthr...

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43.444444

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def get_work_units(self, work_spec_name, work_unit_keys=None, state=None, limit=None, start=None): '''Get (key, value) pairs for work units. If `state` is not :const:`None`, then it should be one of the string state constants, and this function will return a list ...

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49.019231

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def first_consumed_mesh(self): """The first consumed mesh. :return: the first consumed mesh :rtype: knittingpattern.Mesh.Mesh :raises IndexError: if no mesh is consumed .. seealso:: :attr:`number_of_consumed_meshes` """ for instruction in self.instructions: ...

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35.923077

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def _makeTags(tagStr, xml): """Internal helper to construct opening and closing tag expressions, given a tag name""" if isinstance(tagStr,basestring): resname = tagStr tagStr = Keyword(tagStr, caseless=not xml) else: resname = tagStr.name tagAttrName = Word(alphas,alphan...

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56.25

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def downgrade(): """alexm: i believe this method is never called""" with op.batch_alter_table(t2_name) as batch_op: batch_op.drop_column('do_not_use') with op.batch_alter_table(t1_name) as batch_op: batch_op.drop_column('enabled')

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36.142857

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def extract_energy(rate, sig): """ Extracts the energy of frames. """ mfcc = python_speech_features.mfcc(sig, rate, appendEnergy=True) energy_row_vec = mfcc[:, 0] energy_col_vec = energy_row_vec[:, np.newaxis] return energy_col_vec

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35.142857

16

def list_all_shipping_methods(cls, **kwargs): """List ShippingMethods Return a list of ShippingMethods This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> thread = api.list_all_shipping_methods(async=True) ...

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38.478261

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def target(self): """ Target the current space for any forthcoming Cloud Foundry operations. """ # MAINT: I don't like this, but will deal later os.environ['PREDIX_SPACE_GUID'] = self.guid os.environ['PREDIX_SPACE_NAME'] = self.name os.environ['PREDIX_ORGA...

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40.5

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def save(self): """ Creates / updates a row. This is a blind insert call. All validation and cleaning needs to happen prior to calling this. """ if self.instance is None: raise CQLEngineException("DML Query intance attribute is None") assert ty...

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50.738095

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def press(self, coordinate, success=None): """Success must be given as a tuple of a (coordinate, timeout). Use (coordinate,) if you want to use the default timeout.""" if isinstance(coordinate, WebElement): coordinate.click() else: self.get_element(coordinate).cli...

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43.888889

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def srem(self, key, member, *members): """Remove one or more members from a set.""" return self.execute(b'SREM', key, member, *members)

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49.666667

7

def get_data_or_404(model, instance_id, kind=''): """Wrap `get_data`, when missing data, raise BadRequest. """ data = get_data(model, instance_id, kind) if not data: return abort(404) return data

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24.111111

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def cfg_(self,cfg=None): """ Getter/Setter of configuration data. This can be used to update and modify the configuration file on the system by new applications. """ if cfg is None: cfg = self._cfg else: self._cfg = cfg self.overlay...

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27.916667

14.916667

def Extra(self): """ Returns any `V`, `P`, `DOI` or `misc` values as a string. These are all the values not returned by [ID()](#metaknowledge.citation.Citation.ID), they are separated by `' ,'`. # Returns `str` > A string containing the data not in the ID of the `Citation`. ...

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31.210526

25.526316

def update(self, **kwargs): """ Overrides update to concatenate streamed data up to defined length. """ data = kwargs.get('data') if data is not None: if (util.pd and isinstance(data, util.pd.DataFrame) and list(data.columns) != list(self.data.columns)...

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40

12.923077

def exit(self): """Overwrite the exit method to close threads.""" if self._thread is not None: self._thread.stop() # Call the father class super(Plugin, self).exit()

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34

8.833333

def is_title(p): """ Certain p tags are denoted as ``Title`` tags. This function will return True if the passed in p tag is considered a title. """ w_namespace = get_namespace(p, 'w') styles = p.xpath('.//w:pStyle', namespaces=p.nsmap) if len(styles) == 0: return False style = st...

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33.818182

14.363636

def _fsic_queuing_calc(fsic1, fsic2): """ We set the lower counter between two same instance ids. If an instance_id exists in one fsic but not the other we want to give that counter a value of 0. :param fsic1: dictionary containing (instance_id, counter) pairs :param fsic2: dictionary containing (i...

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56

31.2

def getDomainFromUrl(self, url): """ Extracting the domain from the URL. :return: domain as a string. """ try: domain = re.findall( self.domainRegexp, url )[0] except Exception, e: errMsg = "ERROR. Something happened when tryin...

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43

25.153846

def _convert_for_reindex(self, key, axis=None): """ Transform a list of keys into a new array ready to be used as axis of the object we return (e.g. including NaNs). Parameters ---------- key : list-like Target labels axis: int Where the i...

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28.666667

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def _ep_active(self): """Both ends of the Endpoint have become active.""" LOG.debug("Connection is up") if self._handler: with self._callback_lock: self._handler.connection_active(self)

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38.666667

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def FileHashIndexQuery(self, subject, target_prefix, limit=100): """Search the index for matches starting with target_prefix. Args: subject: The index to use. Should be a urn that points to the sha256 namespace. target_prefix: The prefix to match against the index. limit: Either a...

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32.034483

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