kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def PrintStats(self): """Build stats and print in MarkDown format.""" self.BuildStats() self.PrintSummaryTable() self.PrintSourceTypeTable() self.PrintOSTable() self.PrintLabelTable()	[ "def", "PrintStats", "(", "self", ")", ":", "self", ".", "BuildStats", "(", ")", "self", ".", "PrintSummaryTable", "(", ")", "self", ".", "PrintSourceTypeTable", "(", ")", "self", ".", "PrintOSTable", "(", ")", "self", ".", "PrintLabelTable", "(", ")" ]	28.714286	12.857143
def _redefines_import(node): """ Detect that the given node (AssignName) is inside an exception handler and redefines an import from the tryexcept body. Returns True if the node redefines an import, False otherwise. """ current = node while current and not isinstance(current.parent, astroid.Exce...	[ "def", "_redefines_import", "(", "node", ")", ":", "current", "=", "node", "while", "current", "and", "not", "isinstance", "(", "current", ".", "parent", ",", "astroid", ".", "ExceptHandler", ")", ":", "current", "=", "current", ".", "parent", "if", "not",...	41.473684	16.578947
def threshold_monitor_hidden_threshold_monitor_interface_apply(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") threshold_monitor_hidden = ET.SubElement(config, "threshold-monitor-hidden", xmlns="urn:brocade.com:mgmt:brocade-threshold-monitor") threshold_...	[ "def", "threshold_monitor_hidden_threshold_monitor_interface_apply", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "threshold_monitor_hidden", "=", "ET", ".", "SubElement", "(", "config", ",", "\"thres...	52.25	24.166667
def hook(self, pc): """ A decorator used to register a hook function for a given instruction address. Equivalent to calling :func:`~add_hook`. :param pc: Address of instruction to hook :type pc: int or None """ def decorator(f): self.add_hook(pc, f) ...	[ "def", "hook", "(", "self", ",", "pc", ")", ":", "def", "decorator", "(", "f", ")", ":", "self", ".", "add_hook", "(", "pc", ",", "f", ")", "return", "f", "return", "decorator" ]	29.416667	16.083333
def read_code_bytes(self, size = 128, offset = 0): """ Tries to read some bytes of the code currently being executed. @type size: int @param size: Number of bytes to read. @type offset: int @param offset: Offset from the program counter to begin reading. @rty...	[ "def", "read_code_bytes", "(", "self", ",", "size", "=", "128", ",", "offset", "=", "0", ")", ":", "return", "self", ".", "get_process", "(", ")", ".", "read", "(", "self", ".", "get_pc", "(", ")", "+", "offset", ",", "size", ")" ]	32	21.875
async def zrange(self, name, start, end, desc=False, withscores=False, score_cast_func=float): """ Return a range of values from sorted set ``name`` between ``start`` and ``end`` sorted in ascending order. ``start`` and ``end`` can be negative, indicating the end of...	[ "async", "def", "zrange", "(", "self", ",", "name", ",", "start", ",", "end", ",", "desc", "=", "False", ",", "withscores", "=", "False", ",", "score_cast_func", "=", "float", ")", ":", "if", "desc", ":", "return", "await", "self", ".", "zrevrange", ...	40.115385	22.115385
def bogoliubov_trans(p, q, theta): r"""The 2-mode Bogoliubov transformation is mapped to two-qubit operations. We use the identity X S^\dag X S X = Y X S^\dag Y S X = X to transform the Hamiltonian XY+YX to XX+YY type. The time evolution of the XX + YY Hamiltonian can be expressed as a power of the i...	[ "def", "bogoliubov_trans", "(", "p", ",", "q", ",", "theta", ")", ":", "# The iSWAP gate corresponds to evolve under the Hamiltonian XX+YY for", "# time -pi/4.", "expo", "=", "-", "4", "*", "theta", "/", "np", ".", "pi", "yield", "cirq", ".", "X", "(", "p", ")...	34.608696	21.391304
def validate_block(self, block: BaseBlock) -> None: """ Performs validation on a block that is either being mined or imported. Since block validation (specifically the uncle validation) must have access to the ancestor blocks, this validation must occur at the Chain level. ...	[ "def", "validate_block", "(", "self", ",", "block", ":", "BaseBlock", ")", "->", "None", ":", "if", "block", ".", "is_genesis", ":", "raise", "ValidationError", "(", "\"Cannot validate genesis block this way\"", ")", "VM_class", "=", "self", ".", "get_vm_class_for...	46.176471	24.058824
def _request(self, text, properties, retries=0): """Send a request to the CoreNLP server. :param (str \| unicode) text: raw text for the CoreNLPServer to parse :param (dict) properties: properties that the server expects :return: request result """ text = to_unicode(text)...	[ "def", "_request", "(", "self", ",", "text", ",", "properties", ",", "retries", "=", "0", ")", ":", "text", "=", "to_unicode", "(", "text", ")", "# ensures unicode", "try", ":", "r", "=", "requests", ".", "post", "(", "self", ".", "server", ",", "par...	44.555556	19.925926
def position_after_whitespace(self, body: str, start_position: int) -> int: """Go to next position after a whitespace. Reads from body starting at start_position until it finds a non-whitespace character, then returns the position of that character for lexing. """ body_length = ...	[ "def", "position_after_whitespace", "(", "self", ",", "body", ":", "str", ",", "start_position", ":", "int", ")", "->", "int", ":", "body_length", "=", "len", "(", "body", ")", "position", "=", "start_position", "while", "position", "<", "body_length", ":", ...	35.884615	13.846154
def handle_exec(args): """usage: cosmic-ray exec <session-file> Perform the remaining work to be done in the specified session. This requires that the rest of your mutation testing infrastructure (e.g. worker processes) are already running. """ session_file = get_db_name(args.get('<session-file...	[ "def", "handle_exec", "(", "args", ")", ":", "session_file", "=", "get_db_name", "(", "args", ".", "get", "(", "'<session-file>'", ")", ")", "cosmic_ray", ".", "commands", ".", "execute", "(", "session_file", ")", "return", "ExitCode", ".", "OK" ]	34.909091	18.636364
def people(self): """ The people list stored in payload (decoded upon every call()) :return: The people :rtype: list[paps.people.People] :raises ProtocolViolation: Failed to find marker Wrong number of bits in payload -> cannot decode into people ...	[ "def", "people", "(", "self", ")", ":", "people", "=", "[", "]", "bits", "=", "bytearray", "(", ")", "byts", "=", "struct", ".", "unpack", "(", "APPUpdateMessage", ".", "fmt", ".", "format", "(", "len", "(", "self", ".", "payload", ")", ")", ",", ...	32.942308	15.557692
def remove_all_nexusnve_bindings(): """Removes all nexusnve bindings.""" LOG.debug("remove_all_nexusport_bindings() called") session = bc.get_writer_session() session.query(nexus_models_v2.NexusNVEBinding).delete() session.flush()	[ "def", "remove_all_nexusnve_bindings", "(", ")", ":", "LOG", ".", "debug", "(", "\"remove_all_nexusport_bindings() called\"", ")", "session", "=", "bc", ".", "get_writer_session", "(", ")", "session", ".", "query", "(", "nexus_models_v2", ".", "NexusNVEBinding", ")"...	35	14.714286
def apply(self, func, mapping=None, new_dtype=None, **kwargs): """Apply an element-wise UDF to the Series. There are currently 6 options for using a UDF. First 4 are lazy, other 2 are eager and require the use of the raw decorator: - One of the predefined functions in baloo.functions. ...	[ "def", "apply", "(", "self", ",", "func", ",", "mapping", "=", "None", ",", "new_dtype", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "callable", "(", "func", ")", ":", "return", "Series", "(", "func", "(", "self", ".", "values", ",", "w...	35.138889	23.712963
def _check(self): '''Check and close connection if needed.''' _logger.debug('Check if timeout.') self._call_later_handle = None if self._touch_time is not None: difference = self._event_loop.time() - self._touch_time _logger.debug('Time difference %s', difference...	[ "def", "_check", "(", "self", ")", ":", "_logger", ".", "debug", "(", "'Check if timeout.'", ")", "self", ".", "_call_later_handle", "=", "None", "if", "self", ".", "_touch_time", "is", "not", "None", ":", "difference", "=", "self", ".", "_event_loop", "."...	33.533333	14.733333
def decode(data): """ Handles decoding of the CSV `data`. Args: data (str): Data which will be decoded. Returns: dict: Dictionary with decoded data. """ # try to guess dialect of the csv file dialect = None try: dialect = csv.Sniffer().sniff(data) except Exc...	[ "def", "decode", "(", "data", ")", ":", "# try to guess dialect of the csv file", "dialect", "=", "None", "try", ":", "dialect", "=", "csv", ".", "Sniffer", "(", ")", ".", "sniff", "(", "data", ")", "except", "Exception", ":", "pass", "# parse data with csv pa...	26.76	21.16
def run(_, data, out_dir): """Run kraken, generating report in specified directory and parsing metrics. Using only first paired reads. """ # logger.info("Number of aligned reads < than 0.60 in %s: %s" % (dd.get_sample_name(data), ratio)) logger.info("Running kraken to determine contaminant: %s" %...	[ "def", "run", "(", "_", ",", "data", ",", "out_dir", ")", ":", "# logger.info(\"Number of aligned reads < than 0.60 in %s: %s\" % (dd.get_sample_name(data), ratio))", "logger", ".", "info", "(", "\"Running kraken to determine contaminant: %s\"", "%", "dd", ".", "get_sample_name...	50.166667	18.952381
def parse(self, lines): """ Parses the `.gitignore` file represented by the lines. """ if isinstance(lines, str): lines = lines.split('\n') sub = _re.sub for line in lines: if line.endswith('\n'): line = line[:-1] line = line.lstrip() if not line.startswith('#'...	[ "def", "parse", "(", "self", ",", "lines", ")", ":", "if", "isinstance", "(", "lines", ",", "str", ")", ":", "lines", "=", "lines", ".", "split", "(", "'\\n'", ")", "sub", "=", "_re", ".", "sub", "for", "line", "in", "lines", ":", "if", "line", ...	30.458333	13.958333
def quick_send(self, send, echo=None, loglevel=logging.INFO): """Quick and dirty send that ignores background tasks. Intended for internal use. """ shutit = self.shutit shutit.log('Quick send: ' + send, level=loglevel) res = self.sendline(ShutItSendSpec(self, send=send, ...	[ "def", "quick_send", "(", "self", ",", "send", ",", "echo", "=", "None", ",", "loglevel", "=", "logging", ".", "INFO", ")", ":", "shutit", "=", "self", ".", "shutit", "shutit", ".", "log", "(", "'Quick send: '", "+", "send", ",", "level", "=", "logle...	46.357143	12.928571
def update(self, new: 'Sentence', flags: Flags): """ Erase items with the specified flags and insert the new items from the other sentence instead. """ items = [i for i in self.items if i.flags != flags] items.extend(new.items) self.items = items	[ "def", "update", "(", "self", ",", "new", ":", "'Sentence'", ",", "flags", ":", "Flags", ")", ":", "items", "=", "[", "i", "for", "i", "in", "self", ".", "items", "if", "i", ".", "flags", "!=", "flags", "]", "items", ".", "extend", "(", "new", ...	32.777778	14.333333
def checkout(self, transparent=False, kwargs): """ create a pagseguro checkout """ self.data['currency'] = self.config.CURRENCY self.build_checkout_params(kwargs) if transparent: response = self.post(url=self.config.TRANSPARENT_CHECKOUT_URL) else: resp...	[ "def", "checkout", "(", "self", ",", "transparent", "=", "False", ",", "", "", "kwargs", ")", ":", "self", ".", "data", "[", "'currency'", "]", "=", "self", ".", "config", ".", "CURRENCY", "self", ".", "build_checkout_params", "(", "", "", "kwargs"...	48.555556	18
def readadd(file, system): """read DYR file""" dyr = {} data = [] end = 0 retval = True sep = ',' fid = open(file, 'r') for line in fid.readlines(): if line.find('/') >= 0: line = line.split('/')[0] end = 1 if line.find(',') >= 0: # mixed comma a...	[ "def", "readadd", "(", "file", ",", "system", ")", ":", "dyr", "=", "{", "}", "data", "=", "[", "]", "end", "=", "0", "retval", "=", "True", "sep", "=", "','", "fid", "=", "open", "(", "file", ",", "'r'", ")", "for", "line", "in", "fid", ".",...	23.881356	19.864407
def _cleanup_keys_with_confirmation(self, keys_to_delete): """Asks confirmation and then deletes entries with keys. Args: keys_to_delete: list of datastore keys for which entries should be deleted """ print('Round name: ', self.round_name) print('Number of entities to be deleted: ', len(keys_...	[ "def", "_cleanup_keys_with_confirmation", "(", "self", ",", "keys_to_delete", ")", ":", "print", "(", "'Round name: '", ",", "self", ".", "round_name", ")", "print", "(", "'Number of entities to be deleted: '", ",", "len", "(", "keys_to_delete", ")", ")", "if", "n...	33.3	16.875
def is_ipv4_filter(ip, options=None): ''' Returns a bool telling if the value passed to it was a valid IPv4 address. ip The IP address. net: False Consider IP addresses followed by netmask. options CSV of options regarding the nature of the IP address. E.g.: loopback, mult...	[ "def", "is_ipv4_filter", "(", "ip", ",", "options", "=", "None", ")", ":", "_is_ipv4", "=", "_is_ipv", "(", "ip", ",", "4", ",", "options", "=", "options", ")", "return", "isinstance", "(", "_is_ipv4", ",", "six", ".", "string_types", ")" ]	28.666667	28
def image_data(Z, X=[0,1.0], Y=[0,1.0], aspect=1.0, zmin=None, zmax=None, clear=1, clabel='z', autoformat=True, colormap="Last Used", shell_history=0, **kwargs): """ Generates an image plot. Parameters ---------- Z 2-d array of z-values X=[0,1.0], Y=[0,1.0] 1-d array of x...	[ "def", "image_data", "(", "Z", ",", "X", "=", "[", "0", ",", "1.0", "]", ",", "Y", "=", "[", "0", ",", "1.0", "]", ",", "aspect", "=", "1.0", ",", "zmin", "=", "None", ",", "zmax", "=", "None", ",", "clear", "=", "1", ",", "clabel", "=", ...	27.170732	24.243902
def http_error_handler(f): """Handle 404 errors returned by the API server """ def hrefs_to_resources(hrefs): for href in hrefs.replace(',', '').split(): type, uuid = href.split('/')[-2:] yield Resource(type, uuid=uuid) def hrefs_list_to_resources(hrefs_list): f...	[ "def", "http_error_handler", "(", "f", ")", ":", "def", "hrefs_to_resources", "(", "hrefs", ")", ":", "for", "href", "in", "hrefs", ".", "replace", "(", "','", ",", "''", ")", ".", "split", "(", ")", ":", "type", ",", "uuid", "=", "href", ".", "spl...	42.208333	16.791667
def create(provider, names, opts=None, **kwargs): ''' Create an instance using Salt Cloud CLI Example: .. code-block:: bash salt minionname cloud.create my-ec2-config myinstance image=ami-1624987f size='t1.micro' ssh_username=ec2-user securitygroup=default delvol_on_destroy=True ''' c...	[ "def", "create", "(", "provider", ",", "names", ",", "opts", "=", "None", ",", "", "", "kwargs", ")", ":", "client", "=", "_get_client", "(", ")", "if", "isinstance", "(", "opts", ",", "dict", ")", ":", "client", ".", "opts", ".", "update", "(", ...	30.6	28.466667
def reconstruct(self, t:Tensor, x:Tensor=None): "Reconstruct one of the underlying item for its data `t`." return self[0].reconstruct(t,x) if has_arg(self[0].reconstruct, 'x') else self[0].reconstruct(t)	[ "def", "reconstruct", "(", "self", ",", "t", ":", "Tensor", ",", "x", ":", "Tensor", "=", "None", ")", ":", "return", "self", "[", "0", "]", ".", "reconstruct", "(", "t", ",", "x", ")", "if", "has_arg", "(", "self", "[", "0", "]", ".", "reconst...	72.333333	32.333333
def description(self) -> str: '''Test name in nose output (intended to be overridden).''' return '{0.uuid.hex}—{1}'.format(self, self.context.module)	[ "def", "description", "(", "self", ")", "->", "str", ":", "return", "'{0.uuid.hex}—{1}'.f", "o", "rmat(s", "e", "lf, ", "s", "lf.c", "o", "ntext.m", "o", "dule)", "" ]	40.75	26.25
def move_up(self): """Make the drone rise upwards.""" self.at(ardrone.at.pcmd, True, 0, 0, self.speed, 0)	[ "def", "move_up", "(", "self", ")", ":", "self", ".", "at", "(", "ardrone", ".", "at", ".", "pcmd", ",", "True", ",", "0", ",", "0", ",", "self", ".", "speed", ",", "0", ")" ]	39.666667	13.666667
async def next(self) -> Any: """Emits the next multipart body part.""" # So, if we're at BOF, we need to skip till the boundary. if self._at_eof: return await self._maybe_release_last_part() if self._at_bof: await self._read_until_first_boundary() ...	[ "async", "def", "next", "(", "self", ")", "->", "Any", ":", "# So, if we're at BOF, we need to skip till the boundary.", "if", "self", ".", "_at_eof", ":", "return", "await", "self", ".", "_maybe_release_last_part", "(", ")", "if", "self", ".", "_at_bof", ":", "...	37.933333	15.2
def strictly_increasing(self): """ :returns: a new vulnerability function that is strictly increasing. It is built by removing piece of the function where the mean loss ratio is constant. """ imls, mlrs, covs = [], [], [] previous_mlr = None ...	[ "def", "strictly_increasing", "(", "self", ")", ":", "imls", ",", "mlrs", ",", "covs", "=", "[", "]", ",", "[", "]", ",", "[", "]", "previous_mlr", "=", "None", "for", "i", ",", "mlr", "in", "enumerate", "(", "self", ".", "mean_loss_ratios", ")", "...	32.571429	14.761905
def download_device(headers, cookies, temp_target_disk, device_url, lease_updater, total_bytes_written, total_bytes_to_write): """ Download disk device of HttpNfcLease.info.deviceUrl list of devices :param headers: Request headers :type cookies: dict :param co...	[ "def", "download_device", "(", "headers", ",", "cookies", ",", "temp_target_disk", ",", "device_url", ",", "lease_updater", ",", "total_bytes_written", ",", "total_bytes_to_write", ")", ":", "with", "open", "(", "temp_target_disk", ",", "'wb'", ")", "as", "handle"...	39.964912	15.684211
def partition(self, var: str = '', fraction: float = .7, seed: int = 9878, kfold: int = 1, out: 'SASdata' = None, singleOut: bool = True) -> object: """ Partition a sas data object using SRS sampling or if a variable is specified then stratifying with respect to that variable ...	[ "def", "partition", "(", "self", ",", "var", ":", "str", "=", "''", ",", "fraction", ":", "float", "=", ".7", ",", "seed", ":", "int", "=", "9878", ",", "kfold", ":", "int", "=", "1", ",", "out", ":", "'SASdata'", "=", "None", ",", "singleOut", ...	46.253623	21.478261
def index(request): session = Session(request.body) print 'request.body begin' print request.body print 'request.body end' t = Tropo() smsContent = session.initialText #t.call(to=session.parameters['callToNumber'], network='SIP') #t.say(session.parameters['message']) """ t = Trop...	[ "def", "index", "(", "request", ")", ":", "session", "=", "Session", "(", "request", ".", "body", ")", "print", "'request.body begin'", "print", "request", ".", "body", "print", "'request.body end'", "t", "=", "Tropo", "(", ")", "smsContent", "=", "session",...	49.71875	28.96875
def to_native(self, value, context=None): """ Schematics deserializer override We return a us.states.State object so the abbreviation or long name can be trivially accessed. Additionally, some geo type ops are available. TIP: The us.states library expects unicode so we ...	[ "def", "to_native", "(", "self", ",", "value", ",", "context", "=", "None", ")", ":", "if", "isinstance", "(", "value", ",", "us", ".", "states", ".", "State", ")", ":", "return", "value", "try", ":", "state", "=", "us", ".", "states", ".", "lookup...	30.26087	18.043478
def connection_lost(self, exc: Optional[Exception]) -> None: """ 7.1.4. The WebSocket Connection is Closed. """ logger.debug("%s - event = connection_lost(%s)", self.side, exc) self.state = State.CLOSED logger.debug("%s - state = CLOSED", self.side) if not hasatt...	[ "def", "connection_lost", "(", "self", ",", "exc", ":", "Optional", "[", "Exception", "]", ")", "->", "None", ":", "logger", ".", "debug", "(", "\"%s - event = connection_lost(%s)\"", ",", "self", ".", "side", ",", "exc", ")", "self", ".", "state", "=", ...	38.916667	13.75
def humidity_unit(self): """Get unit of humidity.""" if CONST.UNIT_PERCENT in self._get_status(CONST.HUMI_STATUS_KEY): return CONST.UNIT_PERCENT return None	[ "def", "humidity_unit", "(", "self", ")", ":", "if", "CONST", ".", "UNIT_PERCENT", "in", "self", ".", "_get_status", "(", "CONST", ".", "HUMI_STATUS_KEY", ")", ":", "return", "CONST", ".", "UNIT_PERCENT", "return", "None" ]	37.6	14.6
def col_transform(self, col, digits): """ The lambda body to transform the column values """ if col is None or float(col) < 0.0: return None else: col = self.number_to_base(int(col), self.base, digits) if len(col) == digits: re...	[ "def", "col_transform", "(", "self", ",", "col", ",", "digits", ")", ":", "if", "col", "is", "None", "or", "float", "(", "col", ")", "<", "0.0", ":", "return", "None", "else", ":", "col", "=", "self", ".", "number_to_base", "(", "int", "(", "col", ...	30.846154	15.307692
def _guess_file_format(f): """ Tries to guess file format, first based on file extension (csv / tsv), then by looking for common column separators in the first 10 non-commented lines. Splits by tab / comma / space and counts resulting number of columns. Finds the most common column count, then compa...	[ "def", "_guess_file_format", "(", "f", ")", ":", "filename", ",", "file_extension", "=", "os", ".", "path", ".", "splitext", "(", "f", "[", "'fn'", "]", ")", "tabs", "=", "[", "]", "commas", "=", "[", "]", "spaces", "=", "[", "]", "j", "=", "0", ...	38.043478	18.521739
def stop(self): """ Stop animation thread. """ time.sleep(self.speed) self._count = -9999 sys.stdout.write(self.reverser + '\r\033[K\033[A') sys.stdout.flush() return	[ "def", "stop", "(", "self", ")", ":", "time", ".", "sleep", "(", "self", ".", "speed", ")", "self", ".", "_count", "=", "-", "9999", "sys", ".", "stdout", ".", "write", "(", "self", ".", "reverser", "+", "'\\r\\033[K\\033[A'", ")", "sys", ".", "std...	24.666667	12.888889
def __getX(self): ''' Gets the View X coordinate ''' if DEBUG_COORDS: print >>sys.stderr, "getX(%s %s ## %s)" % (self.getClass(), self.getId(), self.getUniqueId()) x = 0 if self.useUiAutomator: x = self.map['bounds'][0][0] else: ...	[ "def", "__getX", "(", "self", ")", ":", "if", "DEBUG_COORDS", ":", "print", ">>", "sys", ".", "stderr", ",", "\"getX(%s %s ## %s)\"", "%", "(", "self", ".", "getClass", "(", ")", ",", "self", ".", "getId", "(", ")", ",", "self", ".", "getUniqueId", "...	36.409091	29.863636
def _randomize_subject_list(data_list, random): """Randomly permute the voxels of a subject list. The method shuffles the subject one by one in place according to the random type. If RandomType.NORANDOM, return the original list. Parameters ---------- data_list: list of 2D array in shape [nV...	[ "def", "_randomize_subject_list", "(", "data_list", ",", "random", ")", ":", "if", "random", "==", "RandomType", ".", "REPRODUCIBLE", ":", "for", "i", "in", "range", "(", "len", "(", "data_list", ")", ")", ":", "_randomize_single_subject", "(", "data_list", ...	31.086957	18.304348
def from_proto_dict(proto_dict: Dict) -> 'GridQubit': """Proto dict must have 'row' and 'col' keys.""" if 'row' not in proto_dict or 'col' not in proto_dict: raise ValueError( 'Proto dict does not contain row or col: {}'.format(proto_dict)) return GridQubit(row=proto_...	[ "def", "from_proto_dict", "(", "proto_dict", ":", "Dict", ")", "->", "'GridQubit'", ":", "if", "'row'", "not", "in", "proto_dict", "or", "'col'", "not", "in", "proto_dict", ":", "raise", "ValueError", "(", "'Proto dict does not contain row or col: {}'", ".", "form...	58.333333	19.333333
def template(tpl, template_adapter=SimpleTemplate, **kwargs): ''' Get a rendered template as a string iterator. You can use a name, a filename or a template string as first parameter. ''' if tpl not in TEMPLATES or DEBUG: settings = kwargs.get('template_settings',{}) lookup = kwargs....	[ "def", "template", "(", "tpl", ",", "template_adapter", "=", "SimpleTemplate", ",", "", "", "kwargs", ")", ":", "if", "tpl", "not", "in", "TEMPLATES", "or", "DEBUG", ":", "settings", "=", "kwargs", ".", "get", "(", "'template_settings'", ",", "{", "}",...	45.428571	19.428571
def createproject(self, name, **kwargs): """ Creates a new project owned by the authenticated user. :param name: new project name :param path: custom repository name for new project. By default generated based on name :param namespace_id: namespace for the new project (defaults ...	[ "def", "createproject", "(", "self", ",", "name", ",", "", "", "kwargs", ")", ":", "data", "=", "{", "'name'", ":", "name", "}", "if", "kwargs", ":", "data", ".", "update", "(", "kwargs", ")", "request", "=", "requests", ".", "post", "(", "self",...	34.142857	17.514286
def iscm_md_append_array(self, arraypath, member): """ Append a member to a metadata array entry """ array_path = string.split(arraypath, ".") array_key = array_path.pop() current = self.metadata for k in array_path: if not current.has_key(k): ...	[ "def", "iscm_md_append_array", "(", "self", ",", "arraypath", ",", "member", ")", ":", "array_path", "=", "string", ".", "split", "(", "arraypath", ",", "\".\"", ")", "array_key", "=", "array_path", ".", "pop", "(", ")", "current", "=", "self", ".", "met...	37.625	7.375
def create_replication_group(name, primary_cluster_id, replication_group_description, wait=None, region=None, key=None, keyid=None, profile=None): ''' Create replication group. CLI example:: salt myminion boto_elasticache.create_replication...	[ "def", "create_replication_group", "(", "name", ",", "primary_cluster_id", ",", "replication_group_description", ",", "wait", "=", "None", ",", "region", "=", "None", ",", "key", "=", "None", ",", "keyid", "=", "None", ",", "profile", "=", "None", ")", ":", ...	35.96875	25.40625
def clean_url(url, force_scheme=None): """Cleans the given URL.""" # URL should be ASCII according to RFC 3986 url = str(url) # Collapse ../../ and related url_parts = urlparse.urlparse(url) path_parts = [] for part in url_parts.path.split('/'): if part == '.': continue ...	[ "def", "clean_url", "(", "url", ",", "force_scheme", "=", "None", ")", ":", "# URL should be ASCII according to RFC 3986", "url", "=", "str", "(", "url", ")", "# Collapse ../../ and related", "url_parts", "=", "urlparse", ".", "urlparse", "(", "url", ")", "path_pa...	26.16129	14.580645
def Verify(self, message, signature, hash_algorithm=None): """Verifies a given message.""" # This method accepts both PSS and PKCS1v15 padding. PSS is preferred but # old clients only support PKCS1v15. if hash_algorithm is None: hash_algorithm = hashes.SHA256() last_e = None for padding_...	[ "def", "Verify", "(", "self", ",", "message", ",", "signature", ",", "hash_algorithm", "=", "None", ")", ":", "# This method accepts both PSS and PKCS1v15 padding. PSS is preferred but", "# old clients only support PKCS1v15.", "if", "hash_algorithm", "is", "None", ":", "has...	29.375	18.833333
def calc_wind_chill(t, windspeed, windspeed10min=None): ''' calculates the wind chill value based upon the temperature (F) and wind. returns the wind chill in degrees F. ''' w = max(windspeed10min, windspeed) return 35.74 + 0.6215 * t - 35.75 * (w ** 0.16) + 0.4275 * t * (w ** 0.16);	[ "def", "calc_wind_chill", "(", "t", ",", "windspeed", ",", "windspeed10min", "=", "None", ")", ":", "w", "=", "max", "(", "windspeed10min", ",", "windspeed", ")", "return", "35.74", "+", "0.6215", "", "t", "-", "35.75", "", "(", "w", "**", "0.16", ...	30.5	26.3
def add_html_report_optgroup(parser): """ Option group for the HTML report format """ g = parser.add_argument_group("HTML Report Options") g.add_argument("--html-stylesheet", action="append", dest="html_stylesheets", default=list()) g.add_argument("--html-javascript", actio...	[ "def", "add_html_report_optgroup", "(", "parser", ")", ":", "g", "=", "parser", ".", "add_argument_group", "(", "\"HTML Report Options\"", ")", "g", ".", "add_argument", "(", "\"--html-stylesheet\"", ",", "action", "=", "\"append\"", ",", "dest", "=", "\"html_styl...	35.8125	20.3125
def overlaps_range(self, begin, end): """ Returns whether some interval in the tree overlaps the given range. Returns False if given a null interval over which to test. Completes in O(r*log n) time, where r is the range length and n is the table size. :rtype: boo...	[ "def", "overlaps_range", "(", "self", ",", "begin", ",", "end", ")", ":", "if", "self", ".", "is_empty", "(", ")", ":", "return", "False", "elif", "begin", ">=", "end", ":", "return", "False", "elif", "self", ".", "overlaps_point", "(", "begin", ")", ...	30.095238	15.714286
def show_max(df): """Pour chaque serie (colonne) d'un DataFrame, va rechercher la (les) valeur(s) et la (les) date(s) du (des) max. Paramètres: df: DataFrame de valeurs à calculer Retourne: Un DataFrame montrant pour chaque serie (colonne), les valeurs maxs aux dates d'apparition. """ ...	[ "def", "show_max", "(", "df", ")", ":", "df", "=", "df", ".", "astype", "(", "pd", ".", "np", ".", "float", ")", "res", "=", "list", "(", ")", "for", "c", "in", "df", ".", "columns", ":", "serie", "=", "df", "[", "c", "]", "res", ".", "appe...	30.294118	20.294118
def _unwrap_stream(uri, timeout, scanner, requests_session): """ Get a stream URI from a playlist URI, ``uri``. Unwraps nested playlists until something that's not a playlist is found or the ``timeout`` is reached. """ original_uri = uri seen_uris = set() deadline = time.time() + timeou...	[ "def", "_unwrap_stream", "(", "uri", ",", "timeout", ",", "scanner", ",", "requests_session", ")", ":", "original_uri", "=", "uri", "seen_uris", "=", "set", "(", ")", "deadline", "=", "time", ".", "time", "(", ")", "+", "timeout", "while", "time", ".", ...	34.328358	19.820896
def set_acl(self, acl_or_str, key_name='', validate=True, headers=None, version_id=None): """sets or updates a bucket's acl""" if not self.bucket_name: raise InvalidUriError('set_acl on bucket-less URI (%s)' % self.uri) self.get_bucke...	[ "def", "set_acl", "(", "self", ",", "acl_or_str", ",", "key_name", "=", "''", ",", "validate", "=", "True", ",", "headers", "=", "None", ",", "version_id", "=", "None", ")", ":", "if", "not", "self", ".", "bucket_name", ":", "raise", "InvalidUriError", ...	54.375	17.625
def Chung(T, MW, Tc, omega, Cvm, mu): r'''Estimates the thermal conductivity of a gas as a function of temperature using the CSP method of Chung [1]_. .. math:: \frac{\lambda M}{\eta C_v} = \frac{3.75 \Psi}{C_v/R} \Psi = 1 + \alpha \left\{[0.215+0.28288\alpha-1.061\beta+0.26665Z]/ ...	[ "def", "Chung", "(", "T", ",", "MW", ",", "Tc", ",", "omega", ",", "Cvm", ",", "mu", ")", ":", "MW", "=", "MW", "/", "1000.", "alpha", "=", "Cvm", "/", "R", "-", "1.5", "beta", "=", "0.7862", "-", "0.7109", "", "omega", "+", "1.3168", "", ...	30.578125	24.328125
def get_derived_from(self, address): """Get the target the specified target was derived from. If a Target was injected programmatically, e.g. from codegen, this allows us to trace its ancestry. If a Target is not derived, default to returning itself. :API: public """ parent_address = self._de...	[ "def", "get_derived_from", "(", "self", ",", "address", ")", ":", "parent_address", "=", "self", ".", "_derived_from_by_derivative", ".", "get", "(", "address", ",", "address", ")", "return", "self", ".", "get_target", "(", "parent_address", ")" ]	40	22.9
def create_exception(error_codec): """ Creates an exception with given error codec. :param error_codec: (Error Codec), error codec which includes the class name, message and exception trace. :return: (Exception), the created exception. """ if error_codec.error_code in ERROR_CODE_TO_ERROR: ...	[ "def", "create_exception", "(", "error_codec", ")", ":", "if", "error_codec", ".", "error_code", "in", "ERROR_CODE_TO_ERROR", ":", "return", "ERROR_CODE_TO_ERROR", "[", "error_codec", ".", "error_code", "]", "(", "error_codec", ".", "message", ")", "stack_trace", ...	48.176471	25
def mlt(self, _id): ''' High-level method to do "more like this". Its exact implementation can vary. ''' query = { 'query': {'more_like_this': { 'like': {'_id': _id}, 'min_term_freq': 1, 'min_doc_freq'...	[ "def", "mlt", "(", "self", ",", "_id", ")", ":", "query", "=", "{", "'query'", ":", "{", "'more_like_this'", ":", "{", "'like'", ":", "{", "'_id'", ":", "_id", "}", ",", "'min_term_freq'", ":", "1", ",", "'min_doc_freq'", ":", "1", ",", "}", "}", ...	28.277778	14.611111
def hrepr_with_resources(self, obj, cfg): """ This is equivalent to __call__, but performs the additional step of putting the set of resources required to properly display the object in the _resources property of the return value. """ res = self(obj, cfg) res....	[ "def", "hrepr_with_resources", "(", "self", ",", "obj", ",", "", "", "cfg", ")", ":", "res", "=", "self", "(", "obj", ",", "", "", "cfg", ")", "res", ".", "resources", "=", "self", ".", "resources", "return", "res" ]	39.666667	13.666667
def on_page_layout_choice(self, event): """Page layout choice event handler""" width, height = self.paper_sizes_points[event.GetString()] self.page_width_text_ctrl.SetValue(str(width / 72.0)) self.page_height_text_ctrl.SetValue(str(height / 72.0)) event.Skip()	[ "def", "on_page_layout_choice", "(", "self", ",", "event", ")", ":", "width", ",", "height", "=", "self", ".", "paper_sizes_points", "[", "event", ".", "GetString", "(", ")", "]", "self", ".", "page_width_text_ctrl", ".", "SetValue", "(", "str", "(", "widt...	36.875	21.375
def set_sides(self, key, data, field, local=False): """ Assign data on the 'key' tile to all the edges """ for side in ['left', 'right', 'top', 'bottom']: self.set(key, data, field, side, local)	[ "def", "set_sides", "(", "self", ",", "key", ",", "data", ",", "field", ",", "local", "=", "False", ")", ":", "for", "side", "in", "[", "'left'", ",", "'right'", ",", "'top'", ",", "'bottom'", "]", ":", "self", ".", "set", "(", "key", ",", "data"...	38.833333	8.5
def set_gcc(): """Try to use GCC on OSX for OpenMP support.""" # For macports and homebrew if 'darwin' in platform.platform().lower(): gcc = extract_gcc_binaries() if gcc is not None: os.environ["CC"] = gcc os.environ["CXX"] = gcc else: global u...	[ "def", "set_gcc", "(", ")", ":", "# For macports and homebrew", "if", "'darwin'", "in", "platform", ".", "platform", "(", ")", ".", "lower", "(", ")", ":", "gcc", "=", "extract_gcc_binaries", "(", ")", "if", "gcc", "is", "not", "None", ":", "os", ".", ...	29.6875	17.875
def find_one(self, query): """Find one wrapper with conversion to dictionary :param dict query: A Mongo query """ mongo_response = yield self.collection.find_one(query) raise Return(self._obj_cursor_to_dictionary(mongo_response))	[ "def", "find_one", "(", "self", ",", "query", ")", ":", "mongo_response", "=", "yield", "self", ".", "collection", ".", "find_one", "(", "query", ")", "raise", "Return", "(", "self", ".", "_obj_cursor_to_dictionary", "(", "mongo_response", ")", ")" ]	37.714286	14.857143
def start_auth(self, context, internal_request, get_state=stateID): """ See super class method satosa.backends.base#start_auth :param get_state: Generates a state to be used in the authentication call. :type get_state: Callable[[str, bytes], str] :type context: satosa.context.Co...	[ "def", "start_auth", "(", "self", ",", "context", ",", "internal_request", ",", "get_state", "=", "stateID", ")", ":", "oauth_state", "=", "get_state", "(", "self", ".", "config", "[", "\"base_url\"", "]", ",", "rndstr", "(", ")", ".", "encode", "(", ")"...	46.222222	22.888889
def score(self, X, y): """ Draws a confusion matrix based on the test data supplied by comparing predictions on instances X with the true values specified by the target vector y. Parameters ---------- X : ndarray or DataFrame of shape n x m A matrix o...	[ "def", "score", "(", "self", ",", "X", ",", "y", ")", ":", "# Create predictions from X (will raise not fitted error)", "y_pred", "=", "self", ".", "predict", "(", "X", ")", "# Encode the target with the supplied label encoder", "if", "self", ".", "label_encoder", ":"...	35.839286	22.482143
def select_python_parser(parser=None): """ Select default parser for loading and refactoring steps. Passing `redbaron` as argument will select the old paring engine from v0.3.3 Replacing the redbaron parser was necessary to support Python 3 syntax. We have tried our best to make...	[ "def", "select_python_parser", "(", "parser", "=", "None", ")", ":", "if", "parser", "==", "'redbaron'", "or", "os", ".", "environ", ".", "get", "(", "'GETGAUGE_USE_0_3_3_PARSER'", ")", ":", "PythonFile", ".", "Class", "=", "RedbaronPythonFile", "else", ":", ...	49.222222	30.444444
def _apply_unitary(val: Any, args: 'ApplyChannelArgs') -> Optional[np.ndarray]: """Attempt to use `apply_unitary` and return the result. If `val` does not support `apply_unitary` returns None. """ left_args = ApplyUnitaryArgs(target_tensor=args.target_tensor, available_...	[ "def", "_apply_unitary", "(", "val", ":", "Any", ",", "args", ":", "'ApplyChannelArgs'", ")", "->", "Optional", "[", "np", ".", "ndarray", "]", ":", "left_args", "=", "ApplyUnitaryArgs", "(", "target_tensor", "=", "args", ".", "target_tensor", ",", "availabl...	43.333333	15.611111
def _computeChart(chart, date): """ Internal function to return a new chart for a specific date using properties from old chart. """ pos = chart.pos hsys = chart.hsys IDs = [obj.id for obj in chart.objects] return Chart(date, pos, IDs=IDs, hsys=hsys)	[ "def", "_computeChart", "(", "chart", ",", "date", ")", ":", "pos", "=", "chart", ".", "pos", "hsys", "=", "chart", ".", "hsys", "IDs", "=", "[", "obj", ".", "id", "for", "obj", "in", "chart", ".", "objects", "]", "return", "Chart", "(", "date", ...	30.555556	11.888889
def generate_html_files(*args): ''' Generate the templates for adding, editing, viewing. :return: None ''' _ = args for tag_key, tag_list in SWITCH_DICS.items(): if tag_key.startswith('dic_'): __write_view_tmpl(tag_list) __write_filter_tmpl(TPL_LIST) __write_list_tm...	[ "def", "generate_html_files", "(", "*", "args", ")", ":", "_", "=", "args", "for", "tag_key", ",", "tag_list", "in", "SWITCH_DICS", ".", "items", "(", ")", ":", "if", "tag_key", ".", "startswith", "(", "'dic_'", ")", ":", "__write_view_tmpl", "(", "tag_l...	24.923077	18.923077
def execute(self, requete_SQL): """Execute one or many requests requete_SQL may be a tuple(requete,args) or a list of such tuples Return the result or a list of results """ try: cursor = self.cursor() if isinstance(requete_SQL,tuple): res =...	[ "def", "execute", "(", "self", ",", "requete_SQL", ")", ":", "try", ":", "cursor", "=", "self", ".", "cursor", "(", ")", "if", "isinstance", "(", "requete_SQL", ",", "tuple", ")", ":", "res", "=", "self", ".", "_execute_one", "(", "cursor", ",", "*",...	33.363636	15.545455
def getAnalogUnit(self,num): """ Returns the COMTRADE channel unit (e.g., kV, V, kA, A) of a given channel number. The number to be given is the same of the COMTRADE header. """ listidx = self.An.index(num) # Get the position of the channel number. return self.uu[...	[ "def", "getAnalogUnit", "(", "self", ",", "num", ")", ":", "listidx", "=", "self", ".", "An", ".", "index", "(", "num", ")", "# Get the position of the channel number.", "return", "self", ".", "uu", "[", "listidx", "]" ]	40.125	14.125
def rcategorical(p, size=None): """ Categorical random variates. """ out = flib.rcat(p, np.random.random(size=size)) if sum(out.shape) == 1: return out.squeeze() else: return out	[ "def", "rcategorical", "(", "p", ",", "size", "=", "None", ")", ":", "out", "=", "flib", ".", "rcat", "(", "p", ",", "np", ".", "random", ".", "random", "(", "size", "=", "size", ")", ")", "if", "sum", "(", "out", ".", "shape", ")", "==", "1"...	23.333333	11.777778
def save_config(self, cmd="save config", confirm=True, confirm_response="y"): """Saves Config.""" self.enable() if confirm: output = self.send_command_timing(command_string=cmd) if confirm_response: output += self.send_command_timing(confirm_response) ...	[ "def", "save_config", "(", "self", ",", "cmd", "=", "\"save config\"", ",", "confirm", "=", "True", ",", "confirm_response", "=", "\"y\"", ")", ":", "self", ".", "enable", "(", ")", "if", "confirm", ":", "output", "=", "self", ".", "send_command_timing", ...	42.428571	20.214286
def _get_widget_id(self, package_name): """ returns widget_id for given package_name does not care about multiple widget ids at the moment, just picks the first :param str package_name: package to check for :return: id of first widget which belongs to the given package_name ...	[ "def", "_get_widget_id", "(", "self", ",", "package_name", ")", ":", "widget_id", "=", "\"\"", "for", "app", "in", "self", ".", "get_apps_list", "(", ")", ":", "if", "app", ".", "package", "==", "package_name", ":", "widget_id", "=", "list", "(", "app", ...	34.866667	16.866667
def output_after_run_set(self, runSet, cputime=None, walltime=None, energy={}): """ The method output_after_run_set() stores the times of a run set in XML. @params cputime, walltime: accumulated times of the run set """ self.add_values_to_run_set_xml(runSet, cputime, walltime, e...	[ "def", "output_after_run_set", "(", "self", ",", "runSet", ",", "cputime", "=", "None", ",", "walltime", "=", "None", ",", "energy", "=", "{", "}", ")", ":", "self", ".", "add_values_to_run_set_xml", "(", "runSet", ",", "cputime", ",", "walltime", ",", "...	43.947368	26.052632
def swap_buffers(self): """ Swap buffers, increment frame counter and pull events """ if not self.window.context: return self.frames += 1 self.window.flip() self.window.dispatch_events()	[ "def", "swap_buffers", "(", "self", ")", ":", "if", "not", "self", ".", "window", ".", "context", ":", "return", "self", ".", "frames", "+=", "1", "self", ".", "window", ".", "flip", "(", ")", "self", ".", "window", ".", "dispatch_events", "(", ")" ]	25.5	13.3
def get(self): """ download the image """ self.log.info('starting the ``get`` method') ra = self.ra dec = self.dec if self.covered == False or self.covered == 999 or self.covered == "999": return self.covered self._download_sdss_image() ...	[ "def", "get", "(", "self", ")", ":", "self", ".", "log", ".", "info", "(", "'starting the ``get`` method'", ")", "ra", "=", "self", ".", "ra", "dec", "=", "self", ".", "dec", "if", "self", ".", "covered", "==", "False", "or", "self", ".", "covered", ...	25.666667	19.266667
def assert_valid(self): """For debugging; does some sanity checks on this set. Raises InvalidNamespaceSetError if this namespace set is invalid. Otherwise, raises/returns nothing.""" for ns_uri, ni in six.iteritems(self.__ns_uri_map): if not ni.uri: raise I...	[ "def", "assert_valid", "(", "self", ")", ":", "for", "ns_uri", ",", "ni", "in", "six", ".", "iteritems", "(", "self", ".", "__ns_uri_map", ")", ":", "if", "not", "ni", ".", "uri", ":", "raise", "InvalidNamespaceSetError", "(", "\"URI not set in _NamespaceInf...	41.288462	18.596154
def encode(python_object, indent=None, large_object=False): """:returns: a JSON-representation of the object""" # sorted keys is easier to read; however, Python-2.7.2 does not have this feature kwargs = dict(indent=indent) if can_dumps_sort_keys(): kwargs.update(sort_keys=True) try: ...	[ "def", "encode", "(", "python_object", ",", "indent", "=", "None", ",", "large_object", "=", "False", ")", ":", "# sorted keys is easier to read; however, Python-2.7.2 does not have this feature", "kwargs", "=", "dict", "(", "indent", "=", "indent", ")", "if", "can_du...	39.5625	15.75
def offer_random(pool, answer, rationale, student_id, options): """ The random selection algorithm. The same as simple algorithm """ offer_simple(pool, answer, rationale, student_id, options)	[ "def", "offer_random", "(", "pool", ",", "answer", ",", "rationale", ",", "student_id", ",", "options", ")", ":", "offer_simple", "(", "pool", ",", "answer", ",", "rationale", ",", "student_id", ",", "options", ")" ]	40.6	13.8
def _cli_main(args=None): """ Pass input arguments to open_tunnel Mandatory: ssh_address, -R (remote bind address list) Optional: -U (username) we may gather it from SSH_CONFIG_FILE or current username -p (server_port), defaults to 22 -P (password) -L (local_bind_ad...	[ "def", "_cli_main", "(", "args", "=", "None", ")", ":", "arguments", "=", "_parse_arguments", "(", "args", ")", "# Remove all \"None\" input values", "_remove_none_values", "(", "arguments", ")", "verbosity", "=", "min", "(", "arguments", ".", "pop", "(", "'verb...	36.871795	18.461538
def fromFile(self, fname): """Displays a spectrogram of an audio file. Supported formats see :func:`sparkle.tools.audiotools.audioread` :param fname: file path of the audiofile to display :type fname: str :returns: float -- duration of audio recording (seconds) """ spec,...	[ "def", "fromFile", "(", "self", ",", "fname", ")", ":", "spec", ",", "f", ",", "bins", ",", "dur", "=", "audiotools", ".", "spectrogram", "(", "fname", ",", "", "", "self", ".", "specgramArgs", ")", "self", ".", "updateImage", "(", "spec", ",", "...	43.6	17.5
def retry_until_not_none_or_limit_reached(method, limit, sleep_s=1, catch_exceptions=()): """Executes a method until the retry limit is hit or not None is returned.""" return retry_until_valid_or_limit_reached( method, limit, lambda x: x is not None, sleep_s, catch_ex...	[ "def", "retry_until_not_none_or_limit_reached", "(", "method", ",", "limit", ",", "sleep_s", "=", "1", ",", "catch_exceptions", "=", "(", ")", ")", ":", "return", "retry_until_valid_or_limit_reached", "(", "method", ",", "limit", ",", "lambda", "x", ":", "x", ...	65	17.2
def _threshold_nans(data, tolerate_nans): """Thresholds data based on proportion of subjects with NaNs Takes in data and a threshold value (float between 0.0 and 1.0) determining the permissible proportion of subjects with non-NaN values. For example, if threshold=.8, any voxel where >= 80% of subject...	[ "def", "_threshold_nans", "(", "data", ",", "tolerate_nans", ")", ":", "nans", "=", "np", ".", "all", "(", "np", ".", "any", "(", "np", ".", "isnan", "(", "data", ")", ",", "axis", "=", "0", ")", ",", "axis", "=", "1", ")", "# Check tolerate_nans i...	38.854545	26.181818
def display(message, wpm, element_duration, word_ref, strip=False): """ Display text message morse code binary morse code """ fmt = "{0:>8s}: '{1}'" key = "text" if strip: print(fmt.format(key, message.strip())) else: print(fmt.format(key, message.stri...	[ "def", "display", "(", "message", ",", "wpm", ",", "element_duration", ",", "word_ref", ",", "strip", "=", "False", ")", ":", "fmt", "=", "\"{0:>8s}: '{1}'\"", "key", "=", "\"text\"", "if", "strip", ":", "print", "(", "fmt", ".", "format", "(", "key", ...	31.846154	17
def queries(self, rcSuffix='', rcNeeded=False, padChar='-', queryInsertionChar='N', unknownQualityChar='!', allowDuplicateIds=False, addAlignment=False): """ Produce padded (with gaps) queries according to the CIGAR string and reference sequence length for each ma...	[ "def", "queries", "(", "self", ",", "rcSuffix", "=", "''", ",", "rcNeeded", "=", "False", ",", "padChar", "=", "'-'", ",", "queryInsertionChar", "=", "'N'", ",", "unknownQualityChar", "=", "'!'", ",", "allowDuplicateIds", "=", "False", ",", "addAlignment", ...	51.814634	22.868293
def withTracebackPrint(ErrorType, thrownError, _traceback): '''returns an Exception object for the given ErrorType of the thrownError and the _traceback can be used like withTracebackPrint(*sys.exc_info())''' file = StringIO.StringIO() traceback.print_exception(ErrorType, thrownError, _traceback, file = fi...	[ "def", "withTracebackPrint", "(", "ErrorType", ",", "thrownError", ",", "_traceback", ")", ":", "file", "=", "StringIO", ".", "StringIO", "(", ")", "traceback", ".", "print_exception", "(", "ErrorType", ",", "thrownError", ",", "_traceback", ",", "file", "=", ...	47.375	25.375
def put(self): """ Save changes made to the object to DocumentCloud. According to DocumentCloud's docs, edits are allowed for the following fields: * title * source * description * related_article * access * publis...	[ "def", "put", "(", "self", ")", ":", "params", "=", "dict", "(", "title", "=", "self", ".", "title", "or", "''", ",", "source", "=", "self", ".", "source", "or", "''", ",", "description", "=", "self", ".", "description", "or", "''", ",", "related_a...	29.074074	18.777778
def encrypt(self, passphrase, sessionkey=None, **prefs): """ Encrypt the contents of this message using a passphrase. :param passphrase: The passphrase to use for encrypting this message. :type passphrase: ``str``, ``unicode``, ``bytes`` :optional param sessionkey: Provide a ses...	[ "def", "encrypt", "(", "self", ",", "passphrase", ",", "sessionkey", "=", "None", ",", "", "", "prefs", ")", ":", "cipher_algo", "=", "prefs", ".", "pop", "(", "'cipher'", ",", "SymmetricKeyAlgorithm", ".", "AES256", ")", "hash_algo", "=", "prefs", "."...	40.891304	26.413043
def pop(self): '''Return a new ImmutableVector with the last item removed.''' if self._length == 0: raise IndexError() newvec = ImmutableVector() newvec.tree = self.tree.remove(self._length-1) newvec._length = self._length-1 return newvec	[ "def", "pop", "(", "self", ")", ":", "if", "self", ".", "_length", "==", "0", ":", "raise", "IndexError", "(", ")", "newvec", "=", "ImmutableVector", "(", ")", "newvec", ".", "tree", "=", "self", ".", "tree", ".", "remove", "(", "self", ".", "_leng...	36.375	14.625
def mutect_caller(align_bams, items, ref_file, assoc_files, region=None, out_file=None): """Run the MuTect paired analysis algorithm. """ config = items[0]["config"] if out_file is None: out_file = "%s-paired-variants.vcf.gz" % os.path.splitext(align_bams[0])[0] if not file...	[ "def", "mutect_caller", "(", "align_bams", ",", "items", ",", "ref_file", ",", "assoc_files", ",", "region", "=", "None", ",", "out_file", "=", "None", ")", ":", "config", "=", "items", "[", "0", "]", "[", "\"config\"", "]", "if", "out_file", "is", "No...	63.890244	29.097561
def register(self, newitems, args, *kwargs): """ Register newitems in registry. :param newitems: New items to add to registry. When registering new items, keys are not allowed to override existing keys in the registry. :type newitems: mapping :param arg...	[ "def", "register", "(", "self", ",", "newitems", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "newkeys", "=", "newitems", ".", "viewkeys", "(", ")", "# set of the new item keys", "if", "any", "(", "self", ".", "viewkeys", "(", ")", "&", "newkey...	46.107143	18.178571
def decode_contents(self, contents, obj): """ Decodes the list of siblings from the protobuf representation into the object. :param contents: a list of RpbContent messages :type contents: list :param obj: a RiakObject :type obj: RiakObject :rtype RiakObje...	[ "def", "decode_contents", "(", "self", ",", "contents", ",", "obj", ")", ":", "obj", ".", "siblings", "=", "[", "self", ".", "decode_content", "(", "c", ",", "RiakContent", "(", "obj", ")", ")", "for", "c", "in", "contents", "]", "# Invoke sibling-resolu...	34.117647	13.411765
def _finalize_nonblock_blob(self, sd, metadata, digest): # type: (SyncCopy, blobxfer.models.synccopy.Descriptor, dict, # str) -> None """Finalize Non-Block blob :param SyncCopy self: this :param blobxfer.models.synccopy.Descriptor sd: synccopy descriptor :param dic...	[ "def", "_finalize_nonblock_blob", "(", "self", ",", "sd", ",", "metadata", ",", "digest", ")", ":", "# type: (SyncCopy, blobxfer.models.synccopy.Descriptor, dict,", "# str) -> None", "# set md5 page blob property if required", "if", "(", "blobxfer", ".", "util", ".", ...	44.9375	10.625
def _fake_createinstance(self, namespace, **params): """ Implements a server responder for :meth:`~pywbem.WBEMConnection.CreateInstance` Create a CIM instance in the local repository of this class. Always use the namespace parameter assuming that pywbem.CreateInstance h...	[ "def", "_fake_createinstance", "(", "self", ",", "namespace", ",", "", "", "params", ")", ":", "if", "self", ".", "_repo_lite", ":", "raise", "CIMError", "(", "CIM_ERR_NOT_SUPPORTED", ",", "\"CreateInstance not supported when repo_lite set.\"", ")", "# Validate para...	41.253425	20.280822
def predict_topk(self, dataset, max_neighbors=10, radius=None, k=3, verbose=False): """ Return top-k most likely predictions for each observation in ``dataset``. Predictions are returned as an SFrame with three columns: `row_id`, `class`, and `probability`. ...	[ "def", "predict_topk", "(", "self", ",", "dataset", ",", "max_neighbors", "=", "10", ",", "radius", "=", "None", ",", "k", "=", "3", ",", "verbose", "=", "False", ")", ":", "## Validate the number of results to return. Note that the", "# 'max_neighbors' and 'radius...	39.991667	24.358333
def get_textnode_subtrees(html_tree, xpath_to_text=TEXT_FINDER_XPATH): """A modification of get_sentence_xpath_tuples: some code was refactored-out, variable names are slightly different. This function does wrap the ltml.tree construction, so a file path, file-like structu...	[ "def", "get_textnode_subtrees", "(", "html_tree", ",", "xpath_to_text", "=", "TEXT_FINDER_XPATH", ")", ":", "try", ":", "xpath_finder", "=", "html_tree", ".", "getroot", "(", ")", ".", "getroottree", "(", ")", ".", "getpath", "except", "(", "AttributeError", "...	42.037037	21.740741
def eval_adiabatic_limit(YABFGN, Ytilde, P0): """Compute the limiting SLH model for the adiabatic approximation Args: YABFGN: The tuple (Y, A, B, F, G, N) as returned by prepare_adiabatic_limit. Ytilde: The pseudo-inverse of Y, satisfying Y * Ytilde = P0. P0: The projector o...	[ "def", "eval_adiabatic_limit", "(", "YABFGN", ",", "Ytilde", ",", "P0", ")", ":", "Y", ",", "A", ",", "B", ",", "F", ",", "G", ",", "N", "=", "YABFGN", "Klim", "=", "(", "P0", "", "(", "B", "-", "A", "", "Ytilde", "", "A", ")", "", "P0"...	34	21.913043

def PrintStats(self): """Build stats and print in MarkDown format.""" self.BuildStats() self.PrintSummaryTable() self.PrintSourceTypeTable() self.PrintOSTable() self.PrintLabelTable()

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def _redefines_import(node): """ Detect that the given node (AssignName) is inside an exception handler and redefines an import from the tryexcept body. Returns True if the node redefines an import, False otherwise. """ current = node while current and not isinstance(current.parent, astroid.Exce...

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def threshold_monitor_hidden_threshold_monitor_interface_apply(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") threshold_monitor_hidden = ET.SubElement(config, "threshold-monitor-hidden", xmlns="urn:brocade.com:mgmt:brocade-threshold-monitor") threshold_...

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def hook(self, pc): """ A decorator used to register a hook function for a given instruction address. Equivalent to calling :func:`~add_hook`. :param pc: Address of instruction to hook :type pc: int or None """ def decorator(f): self.add_hook(pc, f) ...

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def read_code_bytes(self, size = 128, offset = 0): """ Tries to read some bytes of the code currently being executed. @type size: int @param size: Number of bytes to read. @type offset: int @param offset: Offset from the program counter to begin reading. @rty...

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async def zrange(self, name, start, end, desc=False, withscores=False, score_cast_func=float): """ Return a range of values from sorted set ``name`` between ``start`` and ``end`` sorted in ascending order. ``start`` and ``end`` can be negative, indicating the end of...

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def bogoliubov_trans(p, q, theta): r"""The 2-mode Bogoliubov transformation is mapped to two-qubit operations. We use the identity X S^\dag X S X = Y X S^\dag Y S X = X to transform the Hamiltonian XY+YX to XX+YY type. The time evolution of the XX + YY Hamiltonian can be expressed as a power of the i...

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def validate_block(self, block: BaseBlock) -> None: """ Performs validation on a block that is either being mined or imported. Since block validation (specifically the uncle validation) must have access to the ancestor blocks, this validation must occur at the Chain level. ...

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def _request(self, text, properties, retries=0): """Send a request to the CoreNLP server. :param (str | unicode) text: raw text for the CoreNLPServer to parse :param (dict) properties: properties that the server expects :return: request result """ text = to_unicode(text)...

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def position_after_whitespace(self, body: str, start_position: int) -> int: """Go to next position after a whitespace. Reads from body starting at start_position until it finds a non-whitespace character, then returns the position of that character for lexing. """ body_length = ...

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def handle_exec(args): """usage: cosmic-ray exec <session-file> Perform the remaining work to be done in the specified session. This requires that the rest of your mutation testing infrastructure (e.g. worker processes) are already running. """ session_file = get_db_name(args.get('<session-file...

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def people(self): """ The people list stored in payload (decoded upon every call()) :return: The people :rtype: list[paps.people.People] :raises ProtocolViolation: Failed to find marker Wrong number of bits in payload -> cannot decode into people ...

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def remove_all_nexusnve_bindings(): """Removes all nexusnve bindings.""" LOG.debug("remove_all_nexusport_bindings() called") session = bc.get_writer_session() session.query(nexus_models_v2.NexusNVEBinding).delete() session.flush()

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def apply(self, func, mapping=None, new_dtype=None, **kwargs): """Apply an element-wise UDF to the Series. There are currently 6 options for using a UDF. First 4 are lazy, other 2 are eager and require the use of the raw decorator: - One of the predefined functions in baloo.functions. ...

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def _check(self): '''Check and close connection if needed.''' _logger.debug('Check if timeout.') self._call_later_handle = None if self._touch_time is not None: difference = self._event_loop.time() - self._touch_time _logger.debug('Time difference %s', difference...

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def decode(data): """ Handles decoding of the CSV `data`. Args: data (str): Data which will be decoded. Returns: dict: Dictionary with decoded data. """ # try to guess dialect of the csv file dialect = None try: dialect = csv.Sniffer().sniff(data) except Exc...

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def run(_, data, out_dir): """Run kraken, generating report in specified directory and parsing metrics. Using only first paired reads. """ # logger.info("Number of aligned reads < than 0.60 in %s: %s" % (dd.get_sample_name(data), ratio)) logger.info("Running kraken to determine contaminant: %s" %...

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def parse(self, lines): """ Parses the `.gitignore` file represented by the *lines*. """ if isinstance(lines, str): lines = lines.split('\n') sub = _re.sub for line in lines: if line.endswith('\n'): line = line[:-1] line = line.lstrip() if not line.startswith('#'...

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def quick_send(self, send, echo=None, loglevel=logging.INFO): """Quick and dirty send that ignores background tasks. Intended for internal use. """ shutit = self.shutit shutit.log('Quick send: ' + send, level=loglevel) res = self.sendline(ShutItSendSpec(self, send=send, ...

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def update(self, new: 'Sentence', flags: Flags): """ Erase items with the specified flags and insert the new items from the other sentence instead. """ items = [i for i in self.items if i.flags != flags] items.extend(new.items) self.items = items

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def checkout(self, transparent=False, **kwargs): """ create a pagseguro checkout """ self.data['currency'] = self.config.CURRENCY self.build_checkout_params(**kwargs) if transparent: response = self.post(url=self.config.TRANSPARENT_CHECKOUT_URL) else: resp...

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def readadd(file, system): """read DYR file""" dyr = {} data = [] end = 0 retval = True sep = ',' fid = open(file, 'r') for line in fid.readlines(): if line.find('/') >= 0: line = line.split('/')[0] end = 1 if line.find(',') >= 0: # mixed comma a...

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def _cleanup_keys_with_confirmation(self, keys_to_delete): """Asks confirmation and then deletes entries with keys. Args: keys_to_delete: list of datastore keys for which entries should be deleted """ print('Round name: ', self.round_name) print('Number of entities to be deleted: ', len(keys_...

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33.3

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def is_ipv4_filter(ip, options=None): ''' Returns a bool telling if the value passed to it was a valid IPv4 address. ip The IP address. net: False Consider IP addresses followed by netmask. options CSV of options regarding the nature of the IP address. E.g.: loopback, mult...

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28.666667

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def image_data(Z, X=[0,1.0], Y=[0,1.0], aspect=1.0, zmin=None, zmax=None, clear=1, clabel='z', autoformat=True, colormap="Last Used", shell_history=0, **kwargs): """ Generates an image plot. Parameters ---------- Z 2-d array of z-values X=[0,1.0], Y=[0,1.0] 1-d array of x...

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def http_error_handler(f): """Handle 404 errors returned by the API server """ def hrefs_to_resources(hrefs): for href in hrefs.replace(',', '').split(): type, uuid = href.split('/')[-2:] yield Resource(type, uuid=uuid) def hrefs_list_to_resources(hrefs_list): f...

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def create(provider, names, opts=None, **kwargs): ''' Create an instance using Salt Cloud CLI Example: .. code-block:: bash salt minionname cloud.create my-ec2-config myinstance image=ami-1624987f size='t1.micro' ssh_username=ec2-user securitygroup=default delvol_on_destroy=True ''' c...

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30.6

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def reconstruct(self, t:Tensor, x:Tensor=None): "Reconstruct one of the underlying item for its data `t`." return self[0].reconstruct(t,x) if has_arg(self[0].reconstruct, 'x') else self[0].reconstruct(t)

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def description(self) -> str: '''Test name in nose output (intended to be overridden).''' return '{0.uuid.hex}—{1}'.format(self, self.context.module)

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def move_up(self): """Make the drone rise upwards.""" self.at(ardrone.at.pcmd, True, 0, 0, self.speed, 0)

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async def next(self) -> Any: """Emits the next multipart body part.""" # So, if we're at BOF, we need to skip till the boundary. if self._at_eof: return await self._maybe_release_last_part() if self._at_bof: await self._read_until_first_boundary() ...

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def strictly_increasing(self): """ :returns: a new vulnerability function that is strictly increasing. It is built by removing piece of the function where the mean loss ratio is constant. """ imls, mlrs, covs = [], [], [] previous_mlr = None ...

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def download_device(headers, cookies, temp_target_disk, device_url, lease_updater, total_bytes_written, total_bytes_to_write): """ Download disk device of HttpNfcLease.info.deviceUrl list of devices :param headers: Request headers :type cookies: dict :param co...

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def partition(self, var: str = '', fraction: float = .7, seed: int = 9878, kfold: int = 1, out: 'SASdata' = None, singleOut: bool = True) -> object: """ Partition a sas data object using SRS sampling or if a variable is specified then stratifying with respect to that variable ...

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def index(request): session = Session(request.body) print 'request.body begin' print request.body print 'request.body end' t = Tropo() smsContent = session.initialText #t.call(to=session.parameters['callToNumber'], network='SIP') #t.say(session.parameters['message']) """ t = Trop...

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def to_native(self, value, context=None): """ Schematics deserializer override We return a us.states.State object so the abbreviation or long name can be trivially accessed. Additionally, some geo type ops are available. TIP: The us.states library expects unicode so we ...

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def connection_lost(self, exc: Optional[Exception]) -> None: """ 7.1.4. The WebSocket Connection is Closed. """ logger.debug("%s - event = connection_lost(%s)", self.side, exc) self.state = State.CLOSED logger.debug("%s - state = CLOSED", self.side) if not hasatt...

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def humidity_unit(self): """Get unit of humidity.""" if CONST.UNIT_PERCENT in self._get_status(CONST.HUMI_STATUS_KEY): return CONST.UNIT_PERCENT return None

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def col_transform(self, col, digits): """ The lambda body to transform the column values """ if col is None or float(col) < 0.0: return None else: col = self.number_to_base(int(col), self.base, digits) if len(col) == digits: re...

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def _guess_file_format(f): """ Tries to guess file format, first based on file extension (csv / tsv), then by looking for common column separators in the first 10 non-commented lines. Splits by tab / comma / space and counts resulting number of columns. Finds the most common column count, then compa...

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def stop(self): """ Stop animation thread. """ time.sleep(self.speed) self._count = -9999 sys.stdout.write(self.reverser + '\r\033[K\033[A') sys.stdout.flush() return

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def __getX(self): ''' Gets the View X coordinate ''' if DEBUG_COORDS: print >>sys.stderr, "getX(%s %s ## %s)" % (self.getClass(), self.getId(), self.getUniqueId()) x = 0 if self.useUiAutomator: x = self.map['bounds'][0][0] else: ...

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def _randomize_subject_list(data_list, random): """Randomly permute the voxels of a subject list. The method shuffles the subject one by one in place according to the random type. If RandomType.NORANDOM, return the original list. Parameters ---------- data_list: list of 2D array in shape [nV...

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def from_proto_dict(proto_dict: Dict) -> 'GridQubit': """Proto dict must have 'row' and 'col' keys.""" if 'row' not in proto_dict or 'col' not in proto_dict: raise ValueError( 'Proto dict does not contain row or col: {}'.format(proto_dict)) return GridQubit(row=proto_...

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def template(tpl, template_adapter=SimpleTemplate, **kwargs): ''' Get a rendered template as a string iterator. You can use a name, a filename or a template string as first parameter. ''' if tpl not in TEMPLATES or DEBUG: settings = kwargs.get('template_settings',{}) lookup = kwargs....

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def createproject(self, name, **kwargs): """ Creates a new project owned by the authenticated user. :param name: new project name :param path: custom repository name for new project. By default generated based on name :param namespace_id: namespace for the new project (defaults ...

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def iscm_md_append_array(self, arraypath, member): """ Append a member to a metadata array entry """ array_path = string.split(arraypath, ".") array_key = array_path.pop() current = self.metadata for k in array_path: if not current.has_key(k): ...

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def create_replication_group(name, primary_cluster_id, replication_group_description, wait=None, region=None, key=None, keyid=None, profile=None): ''' Create replication group. CLI example:: salt myminion boto_elasticache.create_replication...

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def clean_url(url, force_scheme=None): """Cleans the given URL.""" # URL should be ASCII according to RFC 3986 url = str(url) # Collapse ../../ and related url_parts = urlparse.urlparse(url) path_parts = [] for part in url_parts.path.split('/'): if part == '.': continue ...

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def Verify(self, message, signature, hash_algorithm=None): """Verifies a given message.""" # This method accepts both PSS and PKCS1v15 padding. PSS is preferred but # old clients only support PKCS1v15. if hash_algorithm is None: hash_algorithm = hashes.SHA256() last_e = None for padding_...

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def calc_wind_chill(t, windspeed, windspeed10min=None): ''' calculates the wind chill value based upon the temperature (F) and wind. returns the wind chill in degrees F. ''' w = max(windspeed10min, windspeed) return 35.74 + 0.6215 * t - 35.75 * (w ** 0.16) + 0.4275 * t * (w ** 0.16);

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def add_html_report_optgroup(parser): """ Option group for the HTML report format """ g = parser.add_argument_group("HTML Report Options") g.add_argument("--html-stylesheet", action="append", dest="html_stylesheets", default=list()) g.add_argument("--html-javascript", actio...

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def overlaps_range(self, begin, end): """ Returns whether some interval in the tree overlaps the given range. Returns False if given a null interval over which to test. Completes in O(r*log n) time, where r is the range length and n is the table size. :rtype: boo...

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def show_max(df): """Pour chaque serie (colonne) d'un DataFrame, va rechercher la (les) valeur(s) et la (les) date(s) du (des) max. Paramètres: df: DataFrame de valeurs à calculer Retourne: Un DataFrame montrant pour chaque serie (colonne), les valeurs maxs aux dates d'apparition. """ ...

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def _unwrap_stream(uri, timeout, scanner, requests_session): """ Get a stream URI from a playlist URI, ``uri``. Unwraps nested playlists until something that's not a playlist is found or the ``timeout`` is reached. """ original_uri = uri seen_uris = set() deadline = time.time() + timeou...

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def set_acl(self, acl_or_str, key_name='', validate=True, headers=None, version_id=None): """sets or updates a bucket's acl""" if not self.bucket_name: raise InvalidUriError('set_acl on bucket-less URI (%s)' % self.uri) self.get_bucke...

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def Chung(T, MW, Tc, omega, Cvm, mu): r'''Estimates the thermal conductivity of a gas as a function of temperature using the CSP method of Chung [1]_. .. math:: \frac{\lambda M}{\eta C_v} = \frac{3.75 \Psi}{C_v/R} \Psi = 1 + \alpha \left\{[0.215+0.28288\alpha-1.061\beta+0.26665Z]/ ...

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def get_derived_from(self, address): """Get the target the specified target was derived from. If a Target was injected programmatically, e.g. from codegen, this allows us to trace its ancestry. If a Target is not derived, default to returning itself. :API: public """ parent_address = self._de...

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def create_exception(error_codec): """ Creates an exception with given error codec. :param error_codec: (Error Codec), error codec which includes the class name, message and exception trace. :return: (Exception), the created exception. """ if error_codec.error_code in ERROR_CODE_TO_ERROR: ...

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def mlt(self, _id): ''' High-level method to do "more like this". Its exact implementation can vary. ''' query = { 'query': {'more_like_this': { 'like': {'_id': _id}, 'min_term_freq': 1, 'min_doc_freq'...

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def hrepr_with_resources(self, obj, **cfg): """ This is equivalent to __call__, but performs the additional step of putting the set of resources required to properly display the object in the _resources property of the return value. """ res = self(obj, **cfg) res....

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def on_page_layout_choice(self, event): """Page layout choice event handler""" width, height = self.paper_sizes_points[event.GetString()] self.page_width_text_ctrl.SetValue(str(width / 72.0)) self.page_height_text_ctrl.SetValue(str(height / 72.0)) event.Skip()

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def set_sides(self, key, data, field, local=False): """ Assign data on the 'key' tile to all the edges """ for side in ['left', 'right', 'top', 'bottom']: self.set(key, data, field, side, local)

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def set_gcc(): """Try to use GCC on OSX for OpenMP support.""" # For macports and homebrew if 'darwin' in platform.platform().lower(): gcc = extract_gcc_binaries() if gcc is not None: os.environ["CC"] = gcc os.environ["CXX"] = gcc else: global u...

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def find_one(self, query): """Find one wrapper with conversion to dictionary :param dict query: A Mongo query """ mongo_response = yield self.collection.find_one(query) raise Return(self._obj_cursor_to_dictionary(mongo_response))

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def start_auth(self, context, internal_request, get_state=stateID): """ See super class method satosa.backends.base#start_auth :param get_state: Generates a state to be used in the authentication call. :type get_state: Callable[[str, bytes], str] :type context: satosa.context.Co...

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def score(self, X, y): """ Draws a confusion matrix based on the test data supplied by comparing predictions on instances X with the true values specified by the target vector y. Parameters ---------- X : ndarray or DataFrame of shape n x m A matrix o...

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def select_python_parser(parser=None): """ Select default parser for loading and refactoring steps. Passing `redbaron` as argument will select the old paring engine from v0.3.3 Replacing the redbaron parser was necessary to support Python 3 syntax. We have tried our best to make...

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def _apply_unitary(val: Any, args: 'ApplyChannelArgs') -> Optional[np.ndarray]: """Attempt to use `apply_unitary` and return the result. If `val` does not support `apply_unitary` returns None. """ left_args = ApplyUnitaryArgs(target_tensor=args.target_tensor, available_...

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def _computeChart(chart, date): """ Internal function to return a new chart for a specific date using properties from old chart. """ pos = chart.pos hsys = chart.hsys IDs = [obj.id for obj in chart.objects] return Chart(date, pos, IDs=IDs, hsys=hsys)

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def generate_html_files(*args): ''' Generate the templates for adding, editing, viewing. :return: None ''' _ = args for tag_key, tag_list in SWITCH_DICS.items(): if tag_key.startswith('dic_'): __write_view_tmpl(tag_list) __write_filter_tmpl(TPL_LIST) __write_list_tm...

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24.923077

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def execute(self, requete_SQL): """Execute one or many requests requete_SQL may be a tuple(requete,args) or a list of such tuples Return the result or a list of results """ try: cursor = self.cursor() if isinstance(requete_SQL,tuple): res =...

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def getAnalogUnit(self,num): """ Returns the COMTRADE channel unit (e.g., kV, V, kA, A) of a given channel number. The number to be given is the same of the COMTRADE header. """ listidx = self.An.index(num) # Get the position of the channel number. return self.uu[...

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40.125

14.125

def rcategorical(p, size=None): """ Categorical random variates. """ out = flib.rcat(p, np.random.random(size=size)) if sum(out.shape) == 1: return out.squeeze() else: return out

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def save_config(self, cmd="save config", confirm=True, confirm_response="y"): """Saves Config.""" self.enable() if confirm: output = self.send_command_timing(command_string=cmd) if confirm_response: output += self.send_command_timing(confirm_response) ...

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42.428571

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def _get_widget_id(self, package_name): """ returns widget_id for given package_name does not care about multiple widget ids at the moment, just picks the first :param str package_name: package to check for :return: id of first widget which belongs to the given package_name ...

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34.866667

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def output_after_run_set(self, runSet, cputime=None, walltime=None, energy={}): """ The method output_after_run_set() stores the times of a run set in XML. @params cputime, walltime: accumulated times of the run set """ self.add_values_to_run_set_xml(runSet, cputime, walltime, e...

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43.947368

26.052632

def swap_buffers(self): """ Swap buffers, increment frame counter and pull events """ if not self.window.context: return self.frames += 1 self.window.flip() self.window.dispatch_events()

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25.5

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def get(self): """ *download the image* """ self.log.info('starting the ``get`` method') ra = self.ra dec = self.dec if self.covered == False or self.covered == 999 or self.covered == "999": return self.covered self._download_sdss_image() ...

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25.666667

19.266667

def assert_valid(self): """For debugging; does some sanity checks on this set. Raises InvalidNamespaceSetError if this namespace set is invalid. Otherwise, raises/returns nothing.""" for ns_uri, ni in six.iteritems(self.__ns_uri_map): if not ni.uri: raise I...

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41.288462

18.596154

def encode(python_object, indent=None, large_object=False): """:returns: a JSON-representation of the object""" # sorted keys is easier to read; however, Python-2.7.2 does not have this feature kwargs = dict(indent=indent) if can_dumps_sort_keys(): kwargs.update(sort_keys=True) try: ...

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39.5625

15.75

def offer_random(pool, answer, rationale, student_id, options): """ The random selection algorithm. The same as simple algorithm """ offer_simple(pool, answer, rationale, student_id, options)

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40.6

13.8

def _cli_main(args=None): """ Pass input arguments to open_tunnel Mandatory: ssh_address, -R (remote bind address list) Optional: -U (username) we may gather it from SSH_CONFIG_FILE or current username -p (server_port), defaults to 22 -P (password) -L (local_bind_ad...

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36.871795

18.461538

def fromFile(self, fname): """Displays a spectrogram of an audio file. Supported formats see :func:`sparkle.tools.audiotools.audioread` :param fname: file path of the audiofile to display :type fname: str :returns: float -- duration of audio recording (seconds) """ spec,...

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43.6

17.5

def retry_until_not_none_or_limit_reached(method, limit, sleep_s=1, catch_exceptions=()): """Executes a method until the retry limit is hit or not None is returned.""" return retry_until_valid_or_limit_reached( method, limit, lambda x: x is not None, sleep_s, catch_ex...

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65

17.2

def _threshold_nans(data, tolerate_nans): """Thresholds data based on proportion of subjects with NaNs Takes in data and a threshold value (float between 0.0 and 1.0) determining the permissible proportion of subjects with non-NaN values. For example, if threshold=.8, any voxel where >= 80% of subject...

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38.854545

26.181818

def display(message, wpm, element_duration, word_ref, strip=False): """ Display text message morse code binary morse code """ fmt = "{0:>8s}: '{1}'" key = "text" if strip: print(fmt.format(key, message.strip())) else: print(fmt.format(key, message.stri...

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31.846154

17

def queries(self, rcSuffix='', rcNeeded=False, padChar='-', queryInsertionChar='N', unknownQualityChar='!', allowDuplicateIds=False, addAlignment=False): """ Produce padded (with gaps) queries according to the CIGAR string and reference sequence length for each ma...

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51.814634

22.868293

def withTracebackPrint(ErrorType, thrownError, _traceback): '''returns an Exception object for the given ErrorType of the thrownError and the _traceback can be used like withTracebackPrint(*sys.exc_info())''' file = StringIO.StringIO() traceback.print_exception(ErrorType, thrownError, _traceback, file = fi...

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47.375

25.375

def put(self): """ Save changes made to the object to DocumentCloud. According to DocumentCloud's docs, edits are allowed for the following fields: * title * source * description * related_article * access * publis...

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29.074074

18.777778

def encrypt(self, passphrase, sessionkey=None, **prefs): """ Encrypt the contents of this message using a passphrase. :param passphrase: The passphrase to use for encrypting this message. :type passphrase: ``str``, ``unicode``, ``bytes`` :optional param sessionkey: Provide a ses...

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40.891304

26.413043

def pop(self): '''Return a new ImmutableVector with the last item removed.''' if self._length == 0: raise IndexError() newvec = ImmutableVector() newvec.tree = self.tree.remove(self._length-1) newvec._length = self._length-1 return newvec

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36.375

14.625

def mutect_caller(align_bams, items, ref_file, assoc_files, region=None, out_file=None): """Run the MuTect paired analysis algorithm. """ config = items[0]["config"] if out_file is None: out_file = "%s-paired-variants.vcf.gz" % os.path.splitext(align_bams[0])[0] if not file...

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63.890244

29.097561

def register(self, newitems, *args, **kwargs): """ Register newitems in registry. :param newitems: New items to add to registry. When registering new items, keys are not allowed to override existing keys in the registry. :type newitems: mapping :param arg...

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46.107143

18.178571

def decode_contents(self, contents, obj): """ Decodes the list of siblings from the protobuf representation into the object. :param contents: a list of RpbContent messages :type contents: list :param obj: a RiakObject :type obj: RiakObject :rtype RiakObje...

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34.117647

13.411765

def _finalize_nonblock_blob(self, sd, metadata, digest): # type: (SyncCopy, blobxfer.models.synccopy.Descriptor, dict, # str) -> None """Finalize Non-Block blob :param SyncCopy self: this :param blobxfer.models.synccopy.Descriptor sd: synccopy descriptor :param dic...

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44.9375

10.625

def _fake_createinstance(self, namespace, **params): """ Implements a server responder for :meth:`~pywbem.WBEMConnection.CreateInstance` Create a CIM instance in the local repository of this class. Always use the namespace parameter assuming that pywbem.CreateInstance h...

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41.253425

20.280822

def predict_topk(self, dataset, max_neighbors=10, radius=None, k=3, verbose=False): """ Return top-k most likely predictions for each observation in ``dataset``. Predictions are returned as an SFrame with three columns: `row_id`, `class`, and `probability`. ...

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39.991667

24.358333

def get_textnode_subtrees(html_tree, xpath_to_text=TEXT_FINDER_XPATH): """A modification of get_sentence_xpath_tuples: some code was refactored-out, variable names are slightly different. This function does wrap the ltml.tree construction, so a file path, file-like structu...

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42.037037

21.740741

def eval_adiabatic_limit(YABFGN, Ytilde, P0): """Compute the limiting SLH model for the adiabatic approximation Args: YABFGN: The tuple (Y, A, B, F, G, N) as returned by prepare_adiabatic_limit. Ytilde: The pseudo-inverse of Y, satisfying Y * Ytilde = P0. P0: The projector o...

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34

21.913043