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def ext_pillar(minion_id, pillar, repo, branch='default', root=None): ''' Extract pillar from an hg repository ''' with Repo(repo) as repo: repo.update(branch) envname = 'base' if branch == 'default' else branch if root: path = os.path.normpath(os.path.join(repo.working_dir, root...
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def clean(self, is_table=False): """ Remove reserved keywords from the header. These are keywords that the fits writer must write in order to maintain consistency between header and data. keywords -------- is_table: bool, optional Set True if this is...
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def _set_config_defaults(self, request, form, obj=None): """ Cycle through app_config_values and sets the form value according to the options in the current apphook config. self.app_config_values is a dictionary containing config options as keys, form fields as values:: ...
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def find_xml_generator(name="castxml"): """ Try to find a c++ parser (xml generator) Args: name (str): name of the c++ parser (e.g. castxml) Returns: path (str), name (str): path to the xml generator and it's name If no c++ parser is found the function raises an exception. py...
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def add_checkpoint_file(self, filename): """ Add filename as a checkpoint file for this DAG job. """ if filename not in self.__checkpoint_files: self.__checkpoint_files.append(filename)
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def fileage_handle(self): """Get the number of file in the folder.""" self.file_list = [] self.ok_file = [] self.warn_file = [] self.crit_file = [] status = self.ok if self.args.recursion: self.__file_list = self.__get_folder(self.args.path) e...
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def transform(self, df): """ Transforms a DataFrame in place. Computes all outputs of the DataFrame. Args: df (pandas.DataFrame): DataFrame to transform. """ for name, function in self.outputs: df[name] = function(df)
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def handle(dispatcher, *accept_args, **accept_kwargs): """ :param dispatcher: dispatcher to recieve events from :param accept_args: args to match on :param accept_kwargs: kwargs to match on Creates an MNDFunction instance which containing the argspec and adds the function to the dispatcher. ...
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def ylim(self, low, high): """Set yaxis limits Parameters ---------- low : number high : number index : int, optional Returns ------- Chart """ self.chart['yAxis'][0]['min'] = low self.chart['yAxis'][0]['max'] = high ...
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def get_datetime(self, tz=None): """ Returns the current simulation datetime. Parameters ---------- tz : tzinfo or str, optional The timezone to return the datetime in. This defaults to utc. Returns ------- dt : datetime The curre...
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def signal_terminate(on_terminate): """a common case program termination signal""" for i in [signal.SIGINT, signal.SIGQUIT, signal.SIGUSR1, signal.SIGUSR2, signal.SIGTERM]: signal.signal(i, on_terminate)
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def autolight(scene): """ Generate a list of lights for a scene that looks decent. Parameters -------------- scene : trimesh.Scene Scene with geometry Returns -------------- lights : [Light] List of light objects transforms : (len(lights), 4, 4) float Transformati...
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def save(self, outpath): """Save this command file as an ascii file. Agrs: outpath (str): The output path to save. """ with open(outpath, "w") as outfile: outfile.write(self.dump())
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def _fix_toc(pdf_base, pageref_remap, log): """Repair the table of contents Whenever we replace a page wholesale, it gets assigned a new objgen number and other references to it within the PDF become invalid, most notably in the table of contents (/Outlines in PDF-speak). In weave_layers we collect ...
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def read_creds_from_csv(filename): """ Read credentials from a CSV file :param filename: :return: """ key_id = None secret = None mfa_serial = None secret_next = False with open(filename, 'rt') as csvfile: for i, line in enumerate(csvfile): values = line.spli...
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def read_nodes(fname, filter_elem, nodefactory=Node, remove_comments=True): """ Convert an XML file into a lazy iterator over Node objects satifying the given specification, i.e. a function element -> boolean. :param fname: file name of file object :param filter_elem: element specification In ...
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def count_sources_in_cluster(n_src, cdict, rev_dict): """ Make a vector of sources in each cluster Parameters ---------- n_src : number of sources cdict : dict(int:[int,]) A dictionary of clusters. Each cluster is a source index and the list of other source in the cluster. ...
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def verify_master(self, payload, master_pub=True): ''' Verify that the master is the same one that was previously accepted. :param dict payload: The incoming payload. This is a dictionary which may have the following keys: 'aes': The shared AES key 'enc': The format of t...
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def separator_color(self, value): """ Setter for **self.__separator_color** attribute. :param value: Attribute value. :type value: QColor """ if value is not None: assert type(value) is QColor, "'{0}' attribute: '{1}' type is not 'QColor'!".format( ...
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def compare_dicts(i): """ Input: { dict1 - dictionary 1 dict2 - dictionary 2 (ignore_case) - ignore case of letters Note that if dict1 and dict2 has lists, the results will be as follows: * dict1={"key":['a','b','c']} ...
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def validate(collection, onerror: Callable[[str, List], None] = None): """Validate BioC data structure.""" BioCValidator(onerror).validate(collection)
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def send_at(self, value): """A unix timestamp specifying when your email should be delivered. :param value: A unix timestamp specifying when your email should be delivered. :type value: SendAt, int """ if isinstance(value, SendAt): if value.personaliz...
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def _switchTo(self, newProto, clientFactory=None): """ Switch this Juice instance to a new protocol. You need to do this 'simultaneously' on both ends of a connection; the easiest way to do this is to use a subclass of ProtocolSwitchCommand. """ assert self.innerProtocol is Non...
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def extract(self, item): """Runs the HTML-response trough a list of initialized extractors, a cleaner and compares the results. :param item: NewscrawlerItem to be processed. :return: An updated NewscrawlerItem including the results of the extraction """ article_candidates = [] ...
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def create(cls, sessions=None): """ A session manager will be mounted to the SMCRequest class through this classmethod. If there is already an existing SessionManager, that is returned instead. :param list sessions: a list of Session objects :rtype: SessionManage...
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def field_dict_from_row(row, model, field_names=None, ignore_fields=('id', 'pk'), strip=True, blank_none=True, ignore_related=True, ignore_values=(None,), ignore_errors=Tr...
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def match(self, key, creds, salt, **kwargs): """Checks whether the user-provided key matches the user's credentials :param key: User-supplied key :param creds: User's stored credentials :param salt: Salt for hashing :param kwargs: Extra keyword args for compatibility reason with...
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def all_providers_cnpj(df): """ Return CPF/CNPJ of all providers in database. """ cnpj_list = [] for _, items in df.groupby('PRONAC'): unique_cnpjs = items['nrCNPJCPF'].unique() cnpj_list += list(unique_cnpjs) return pd.DataFrame(cnpj_list)
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def to_ufo_glyph_anchors(self, glyph, anchors): """Add .glyphs anchors to a glyph.""" for anchor in anchors: x, y = anchor.position anchor_dict = {"name": anchor.name, "x": x, "y": y} glyph.appendAnchor(anchor_dict)
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def _read_http_data(self, size, kind, flag): """Read HTTP/2 DATA frames. Structure of HTTP/2 DATA frame [RFC 7540]: +-----------------------------------------------+ | Length (24) | +---------------+---------------+---------------+ ...
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def centroid_1dg(data, error=None, mask=None): """ Calculate the centroid of a 2D array by fitting 1D Gaussians to the marginal ``x`` and ``y`` distributions of the array. Invalid values (e.g. NaNs or infs) in the ``data`` or ``error`` arrays are automatically masked. The mask for invalid values ...
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def translateDNA(sequence, frame = 'f1', translTable_id='default') : """Translates DNA code, frame : fwd1, fwd2, fwd3, rev1, rev2, rev3""" protein = "" if frame == 'f1' : dna = sequence elif frame == 'f2': dna = sequence[1:] elif frame == 'f3' : dna = sequence[2:] elif frame == 'r1' : dna = reverseCompl...
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def installed(cls): """ Used in ``yacms.pages.views.page`` to ensure ``PageMiddleware`` or a subclass has been installed. We cache the result on the ``PageMiddleware._installed`` to only run this once. Short path is to just check for the dotted path to ``PageMiddleware`` ...
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def MultiNotifyQueue(self, notifications, mutation_pool=None): """This is the same as NotifyQueue but for several session_ids at once. Args: notifications: A list of notifications. mutation_pool: A MutationPool object to schedule Notifications on. Raises: RuntimeError: An invalid session...
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async def vcx_agent_provision(config: str) -> None: """ Provision an agent in the agency, populate configuration and wallet for this agent. Example: import json enterprise_config = { 'agency_url': 'http://localhost:8080', 'agency_did': 'VsKV7grR1BUE29mG2Fm2kX', 'agency_verkey...
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def add(self, num): """ Adds num to the current value, jumping up the next multiple of mfac if the result is not a multiple already """ try: val = self.value() + num except: val = num chunk = self.mfac.value() if val % chunk > 0: ...
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def _parse_quit(client, command, actor, args): """Parse a QUIT and update channel states, then dispatch events. Note that two events are dispatched here: - QUIT, because a user quit the server - MEMBERS, for each channel the user is no longer in """ actor = User(actor) _, _, message...
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def buildCliString(self): """ Collect all of the required information from the config screen and build a CLI string which can be used to invoke the client program """ config = self.navbar.getActiveConfig() group = self.buildSpec['widgets'][self.navbar.getSelectedGro...
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def monitor(self, target): """ Start monitoring the online status of a user. Returns whether or not the server supports monitoring. """ if 'monitor-notify' in self._capabilities and not self.is_monitoring(target): yield from self.rawmsg('MONITOR', '+', target) self._monitoring.ad...
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def SETS(cpu, dest): """ Sets byte if sign. :param cpu: current CPU. :param dest: destination operand. """ dest.write(Operators.ITEBV(dest.size, cpu.SF, 1, 0))
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def _from_dict(cls, _dict): """Initialize a UtteranceAnalysis object from a json dictionary.""" args = {} if 'utterance_id' in _dict: args['utterance_id'] = _dict.get('utterance_id') else: raise ValueError( 'Required property \'utterance_id\' not p...
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def _store32(ins): """ Stores 2nd operand content into address of 1st operand. store16 a, x => *(&a) = x """ op = ins.quad[1] indirect = op[0] == '*' if indirect: op = op[1:] immediate = op[0] == '#' # Might make no sense here? if immediate: op = op[1:] if is_int...
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def head_request(self, container, resource=None): """Send a HEAD request.""" url = self.make_url(container, resource) headers = self._make_headers(None) try: rsp = requests.head(url, headers=self._base_headers, verify=self._verify, timeout=sel...
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def _do_pass(self, pass_, dag, options): """Do a pass and its "requires". Args: pass_ (BasePass): Pass to do. dag (DAGCircuit): The dag on which the pass is ran. options (dict): PassManager options. Returns: DAGCircuit: The transformed dag in case...
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def chunk_to_matrices(narr, mapcol, nmask): """ numba compiled code to get matrix fast. arr is a 4 x N seq matrix converted to np.int8 I convert the numbers for ATGC into their respective index for the MAT matrix, and leave all others as high numbers, i.e., -==45, N==78. """ ## get seq al...
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def put(self, item): """Put an item into the queue. True - if item placed in queue. False - if queue is full and item can not be placed.""" if self.__maxsize and len(self.__data) >= self.__maxsize: return False self.__data.append(item) return True
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def filter_matrix_rows(A, theta): """Filter each row of A with tol. i.e., drop all entries in row k where abs(A[i,k]) < tol max( abs(A[:,k]) ) Parameters ---------- A : sparse_matrix theta : float In range [0,1) and defines drop-tolerance used to filter the row of A Retur...
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def poll( self, lease_seconds=LEASE_SECONDS, tag=None, verbose=False, execute_args=[], execute_kwargs={}, stop_fn=None, backoff_exceptions=[], min_backoff_window=30, max_backoff_window=120, log_fn=None ): """ Poll a queue until a stop condition is reached (default forever). Note that th...
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def send_file(self, fp, headers=None, cb=None, num_cb=10, query_args=None, chunked_transfer=False, size=None): """ Upload a file to a key into a bucket on S3. :type fp: file :param fp: The file pointer to upload. The file pointer must point point at ...
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def ParseGroupEntry(self, line): """Extract the members of a group from /etc/group.""" fields = ("name", "passwd", "gid", "members") if line: rslt = dict(zip(fields, line.split(":"))) name = rslt["name"] group = self.entry.setdefault(name, rdf_client.Group(name=name)) group.pw_entry....
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def cli_program_names(self): r"""Developer script program names. """ program_names = {} for cli_class in self.cli_classes: instance = cli_class() program_names[instance.program_name] = cli_class return program_names
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def value(self): """ Represents the speed of the motor as a floating point value between -1 (full speed backward) and 1 (full speed forward). """ return ( -self.enable_device.value if self.phase_device.is_active else self.enable_device.value ...
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def input_file(filename): """ Run all checks on a Python source file. """ if excluded(filename) or not filename_match(filename): return {} if options.verbose: message('checking ' + filename) options.counters['files'] = options.counters.get('files', 0) + 1 errors = Checker(fil...
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def __change_inferencing_mode(self, inferencing_mode): ''' Change dropout rate in Encoder/Decoder. Args: dropout_rate: The probalibity of dropout. ''' self.__encoder_decoder_controller.decoder.opt_params.inferencing_mode = inferencing_mode s...
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def sort_reverse_chronologically(self): """ Sorts the measurements of this buffer in reverse chronological order """ self.measurements.sort(key=lambda m: m.timestamp, reverse=True)
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def create_role(self, name=None, permissions=""): """ Creates role """ name = name or "autocreated-role" from qubell.api.private.role import Role return Role.new(self._router, organization=self, name=name, permissions=permissions)
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def fetch(self): """ Fetch a ChallengeInstance :returns: Fetched ChallengeInstance :rtype: twilio.rest.authy.v1.service.entity.factor.challenge.ChallengeInstance """ params = values.of({}) payload = self._version.fetch( 'GET', self._uri, ...
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def from_file(file_path) -> dict: """ Load JSON file """ with io.open(file_path, 'r', encoding='utf-8') as json_stream: return Json.parse(json_stream, True)
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def clear(self): """Clear sketch""" self.ranking = [] heapq.heapify(self.ranking) self.dq = deque(maxlen=self.k) self.num = 0 return self.clear_method(self)
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def get_task_indicator(self, task_level=None): """ Args: task_level (int or None): task depth level to get the indicator for, if None, will use the current tasks depth Returns: str: char to prepend to the task logs to indicate it's level """ ...
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def find_partition(graph, partition_type, initial_membership=None, weights=None, n_iterations=2, seed=None, **kwargs): """ Detect communities using the default settings. This function detects communities given the specified method in the ``partition_type``. This should be type derived from :class:`VertexPartit...
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def producer(self): """ :raises: kafka.errors.NoBrokersAvailable if the connection is broken """ if self._producer: return self._producer self._producer = KafkaProducer( bootstrap_servers=self.hosts, value_serializer=lambda v: self._serializer...
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def start(self): """ Starts this bot in a separate thread. Therefore, this call is non-blocking. It will listen to all new comments created in the :attr:`~subreddits` list. """ super().start() comments_thread = BotThread(name='{}-comments-stream-thread'.format(self._name...
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def get_milestone(number=None, name=None, repo_name=None, profile='github', output='min'): ''' Return information about a single milestone in a named repository. .. versionadded:: 2016.11.0 number The number of the milesto...
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def add_category(self, category): ''' Add unicode category to set Unicode categories are strings like 'Ll', 'Lu', 'Nd', etc. See `unicodedata.category()` ''' if category == sre.CATEGORY_DIGIT: self._categories |= UNICODE_DIGIT_CATEGORIES elif category...
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def load_word_file(filename): """Loads a words file as a list of lines""" words_file = resource_filename(__name__, "words/%s" % filename) handle = open(words_file, 'r') words = handle.readlines() handle.close() return words
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def get_label(self): """ get label as ndarray from ImageFeature """ label = callBigDlFunc(self.bigdl_type, "imageFeatureToLabelTensor", self.value) return label.to_ndarray()
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def set_reload_params( self, min_lifetime=None, max_lifetime=None, max_requests=None, max_requests_delta=None, max_addr_space=None, max_rss=None, max_uss=None, max_pss=None, max_addr_space_forced=None, max_rss_forced=None, watch_interval_forced=None, mercy=Non...
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def get_csv_rows_for_installed( old_csv_rows, # type: Iterable[List[str]] installed, # type: Dict[str, str] changed, # type: set generated, # type: List[str] lib_dir, # type: str ): # type: (...) -> List[InstalledCSVRow] """ :param installed: A map from archive RECORD path to instal...
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def reload_class(self, verbose=True, reload_module=True): """ special class reloading function This function is often injected as rrr of classes """ import utool as ut verbose = verbose or VERBOSE_CLASS classname = self.__class__.__name__ try: modname = self.__class__.__module__ ...
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def query(self, parents=None): """ Compose the query and generate SPARQL. """ # TODO: benchmark single-query strategy q = Select([]) q = self.project(q, parent=True) q = self.filter(q, parents=parents) if self.parent is None: subq = Select([self.var]) ...
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def format_name(self, format_name): """Set the default format name. :param str format_name: The display format name. :raises ValueError: if the format is not recognized. """ if format_name in self.supported_formats: self._format_name = format_name else: ...
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def get_qual(fastafile, suffix=QUALSUFFIX, check=True): """ Check if current folder contains a qual file associated with the fastafile """ qualfile1 = fastafile.rsplit(".", 1)[0] + suffix qualfile2 = fastafile + suffix if check: if op.exists(qualfile1): logging.debug("qual f...
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def set_default(self): """Set config to default.""" try: os.makedirs(os.path.dirname(self._configfile)) except: pass self._config = configparser.RawConfigParser() self._config.add_section('Settings') for key, val in self.DEFAULTS.items(): ...
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def get_req(self, start_size, end_size): '''打开socket''' logger.debug('DownloadBatch.get_req: %s, %s' % (start_size, end_size)) opener = request.build_opener() content_range = 'bytes={0}-{1}'.format(start_size, end_size) opener.addheaders = [ ('Range', content_range), ...
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def _build_block_element_list(self): """Return a list of block elements, ordered from highest priority to lowest. """ return sorted( [e for e in self.block_elements.values() if not e.virtual], key=lambda e: e.priority, reverse=True )
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def decodeSemiOctets(encodedNumber, numberOfOctets=None): """ Semi-octet decoding algorithm(e.g. for phone numbers) :param encodedNumber: The semi-octet-encoded telephone number (in bytearray format or hex string) :type encodedNumber: bytearray, str or iter(bytearray) :param numberOfOctets: The exp...
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def get_posterior(self, twig=None, feedback=None, **kwargs): """ [NOT IMPLEMENTED] :raises NotImplementedError: because it isn't """ raise NotImplementedError kwargs['context'] = 'posterior' return self.filter(twig=twig, **kwargs)
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def uninstall_hook(ctx): """ Uninstall gitlint commit-msg hook. """ try: lint_config = ctx.obj[0] hooks.GitHookInstaller.uninstall_commit_msg_hook(lint_config) # declare victory :-) hook_path = hooks.GitHookInstaller.commit_msg_hook_path(lint_config) click.echo(u"Successf...
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def parse(self, data, extent, desc_tag): # type: (bytes, int, UDFTag) -> None ''' Parse the passed in data into a UDF File Set Descriptor. Parameters: data - The data to parse. extent - The extent that this descriptor currently lives at. desc_tag - A UDFTag ob...
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def comment(self, nme, desc): """ Adds a comment to the existing program in the list, logs the reference and TODO - adds core link to processes """ if nme != '': program_exists = False for i in self.lstPrograms: print(i) ...
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def _filter_library_state(self, items): """Filters out child elements of library state when they cannot be hovered Checks if hovered item is within a LibraryState * if not, the list is returned unfiltered * if so, STATE_SELECTION_INSIDE_LIBRARY_STATE_ENABLED is checked * if ...
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def make_moves(game, player=dominoes.players.identity): ''' For each of a Game object's valid moves, yields a tuple containing the move and the Game object obtained by playing the move on the original Game object. The original Game object will be modified. :param Game game: the game to make mov...
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def init_tf_ops(sess): """Initialize TensorFlow operations. This function initialize the following tensorflow ops: * init variables ops * summary ops * create model saver Parameters ---------- sess : object Tensorflow `Session` object Returns ------- ...
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def _prompt_changer(attr, val): """Change the current prompt theme""" try: sys.ps1 = conf.color_theme.prompt(conf.prompt) except Exception: pass try: apply_ipython_style(get_ipython()) except NameError: pass
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def sync_object(src_obj, dest_repo, export_context='migrate', overwrite=False, show_progress=False, requires_auth=False, omit_checksums=False, verify=False): '''Copy an object from one repository to another using the Fedora export functionality. :param src_ob...
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def datacite_to_pif_reference(dc): """ Parse a top-level datacite dictionary into a Reference :param dc: dictionary containing datacite metadata :return: Reference corresponding to that datacite entry """ ref = Reference() if dc.get('identifier', {}).get('identifierType') == "DOI": r...
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def round(self, digits=0): """ Round the elements of the given vector to the given number of digits. """ # Meant as a way to clean up Vector.rotate() # For example: # V = Vector(1,0) # V.rotate(2*pi) # # V is now <1.0, -2.4492935982947064e-16>, when it sh...
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def _validate(self, val): """ Checks that the value is numeric and that it is within the hard bounds; if not, an exception is raised. """ if self.allow_None and val is None: return if not isinstance(val, dt_types) and not (self.allow_None and val is None): ...
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def build_taxonomy(self, level, namespace, predicate, value): """ :param level: info, safe, suspicious or malicious :param namespace: Name of analyzer :param predicate: Name of service :param value: value :return: dict """ return { 'level':...
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async def _watch_docker_events(self): """ Get raw docker events and convert them to more readable objects, and then give them to self._docker_events_subscriber """ try: source = AsyncIteratorWrapper(self._docker.sync.event_stream(filters={"event": ["die", "oom"]})) async for i in...
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def apply_stats(self, statsUpdates): """ compute stats and update/apply the new stats to the running average """ def updateAccumStats(): if self._full_stats_init: return tf.cond(tf.greater(self.sgd_step, self._cold_iter), lambda: tf.group(*self._apply_stats(statsUpda...
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def authorized_request(self, method, url, **kwargs): """Shortcut for requests.request with proper Authorization header. Note: If you put auth keyword argument or Authorization in headers keyword argument, this will raise an exception. Decide what you want to do! ...
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def ingress(self, envelope, http_headers, operation): """Overrides the ingress function for response logging. Args: envelope: An Element with the SOAP request data. http_headers: A dict of the current http headers. operation: The SoapOperation instance. Returns: A tuple of the enve...
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def _fill_from_h2ocluster(self, other): """ Update information in this object from another H2OCluster instance. :param H2OCluster other: source of the new information for this object. """ self._props = other._props self._retrieved_at = other._retrieved_at other._...
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def transform_single(self, data, center, i=0): """ Compute entries of `data` in hypercube centered at `center` Parameters =========== data: array-like Data to find in entries in cube. Warning: first column must be index column. center: array-like Center ...
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def setup_metrics(self, metric_names, objects, period, count): """Sets parameters of specified base metrics for a set of objects. Returns an array of :py:class:`IPerformanceMetric` describing the metrics have been affected. @c Null or empty metric name array means all metrics. ...
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def changelist_view(self, request, extra_context=None, *args, **kwargs): """ Handle the changelist view, the django view for the model instances change list/actions page. """ extra_context = extra_context or {} extra_context['EDITOR_MEDIA_PATH'] = settings.MEDIA_PATH ...
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def _workaround_no_stage_specific_variables(project): """Make Stage-specific variables global (move them to Project).""" for (name, var) in project.stage.variables.items(): yield "variable %s" % name for (name, _list) in project.stage.lists.items(): yield "list %s" % name project.variabl...
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def spa_length_in_time(**kwds): """ Returns the length in time of the template, based on the masses, PN order, and low-frequency cut-off. """ m1 = kwds['mass1'] m2 = kwds['mass2'] flow = kwds['f_lower'] porder = int(kwds['phase_order']) # For now, we call the swig-wrapped functi...
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