kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def build_mxnet(app): """Build mxnet .so lib""" if not os.path.exists(os.path.join(app.builder.srcdir, '..', 'config.mk')): _run_cmd("cd %s/.. && cp make/config.mk config.mk && make -j$(nproc) USE_MKLDNN=0 USE_CPP_PACKAGE=1 " % app.builder.srcdir) else: _run_cmd("cd %s/.. && ...	[ "def", "build_mxnet", "(", "app", ")", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "os", ".", "path", ".", "join", "(", "app", ".", "builder", ".", "srcdir", ",", "'..'", ",", "'config.mk'", ")", ")", ":", "_run_cmd", "(", "\"cd %s/.. ...	49.875	26.25
def get_job_statuses(github_token, api_url, build_id, polling_interval, job_number): """Wait for all the travis jobs to complete. Once the other jobs are complete, return a list of booleans, indicating whether or not the job was successful. Ignore jobs marked "allow_failure". "...	[ "def", "get_job_statuses", "(", "github_token", ",", "api_url", ",", "build_id", ",", "polling_interval", ",", "job_number", ")", ":", "auth", "=", "get_json", "(", "'{api_url}/auth/github'", ".", "format", "(", "api_url", "=", "api_url", ")", ",", "data", "="...	44.034483	18.827586
def _pp(dict_data): """Pretty print.""" for key, val in dict_data.items(): # pylint: disable=superfluous-parens print('{0:<11}: {1}'.format(key, val))	[ "def", "_pp", "(", "dict_data", ")", ":", "for", "key", ",", "val", "in", "dict_data", ".", "items", "(", ")", ":", "# pylint: disable=superfluous-parens", "print", "(", "'{0:<11}: {1}'", ".", "format", "(", "key", ",", "val", ")", ")" ]	34	6.6
def serialize(self): """Get the unicode string representing the whole collection.""" import datetime items = [] time_begin = datetime.datetime.now() for href in self.list(): items.append(self.get(href).item) time_end = datetime.datetime.now() self.logg...	[ "def", "serialize", "(", "self", ")", ":", "import", "datetime", "items", "=", "[", "]", "time_begin", "=", "datetime", ".", "datetime", ".", "now", "(", ")", "for", "href", "in", "self", ".", "list", "(", ")", ":", "items", ".", "append", "(", "se...	44.173913	13.782609
def delete_dbinstance(self, id, skip_final_snapshot=False, final_snapshot_id=''): """ Delete an existing DBInstance. :type id: str :param id: Unique identifier for the new instance. :type skip_final_snapshot: bool :param skip_final_snapshot: Th...	[ "def", "delete_dbinstance", "(", "self", ",", "id", ",", "skip_final_snapshot", "=", "False", ",", "final_snapshot_id", "=", "''", ")", ":", "params", "=", "{", "'DBInstanceIdentifier'", ":", "id", "}", "if", "skip_final_snapshot", ":", "params", "[", "'SkipFi...	43.310345	20.62069
def get_cluster(self, label): """Returns a connection to a mongo-clusters. Args: label (string): the label of a cluster. Returns: A connection to the cluster labeld with label. Raises: AttributeError: there is no cluster with the given label in the ...	[ "def", "get_cluster", "(", "self", ",", "label", ")", ":", "for", "cluster", "in", "self", ".", "_clusters", ":", "if", "label", "==", "cluster", "[", "'label'", "]", ":", "return", "self", ".", "_get_connection", "(", "cluster", ")", "raise", "Attribute...	31.294118	19
def _determine_redirect(self, url, verb, timeout=15, headers={}): """ Internal redirect function, focuses on HTTP and worries less about application-y stuff. @param url: the url to check @param verb: the verb, e.g. head, or get. @param timeout: the time, in seconds, that ...	[ "def", "_determine_redirect", "(", "self", ",", "url", ",", "verb", ",", "timeout", "=", "15", ",", "headers", "=", "{", "}", ")", ":", "requests_verb", "=", "getattr", "(", "self", ".", "session", ",", "verb", ")", "r", "=", "requests_verb", "(", "u...	37.121212	18.454545
def create_thumbnail(img, width, height): """ 创建缩略图缩略图的意思就是缩小 :param img: 图片对象 :param width: 宽 :param height: 高 :return: """ size = (width, height) img.thumbnail(size) return img	[ "def", "create_thumbnail", "(", "img", ",", "width", ",", "height", ")", ":", "size", "=", "(", "width", ",", "height", ")", "img", ".", "thumbnail", "(", "size", ")", "return", "img" ]	17.666667	17
def set_writer_position(self, name, timestamp): """Insert a timestamp to keep track of the current writer position""" execute = self.cursor.execute execute('DELETE FROM gauged_writer_history WHERE id = %s', (name,)) execute('INSERT INTO gauged_writer_history (id, timestamp) ' ...	[ "def", "set_writer_position", "(", "self", ",", "name", ",", "timestamp", ")", ":", "execute", "=", "self", ".", "cursor", ".", "execute", "execute", "(", "'DELETE FROM gauged_writer_history WHERE id = %s'", ",", "(", "name", ",", ")", ")", "execute", "(", "'I...	59.666667	14.5
def _metadata_endpoint(self, context): """ Endpoint for retrieving the backend metadata :type context: satosa.context.Context :rtype: satosa.response.Response :param context: The current context :return: response with metadata """ satosa_logging(logger, l...	[ "def", "_metadata_endpoint", "(", "self", ",", "context", ")", ":", "satosa_logging", "(", "logger", ",", "logging", ".", "DEBUG", ",", "\"Sending metadata response\"", ",", "context", ".", "state", ")", "metadata_string", "=", "create_metadata_string", "(", "None...	42.5	18.5
def split(self, cutting_points, shift_times=False, overlap=0.0): """ Split the label-list into x parts and return them as new label-lists. x is defined by the number of cutting-points(``x == len(cutting_points) + 1``) The result is a list of label-lists corresponding to each part. ...	[ "def", "split", "(", "self", ",", "cutting_points", ",", "shift_times", "=", "False", ",", "overlap", "=", "0.0", ")", ":", "if", "len", "(", "cutting_points", ")", "==", "0", ":", "raise", "ValueError", "(", "'At least one cutting-point is needed!'", ")", "...	33.472222	20.712963
def create_guest_screen_info(self, display, status, primary, change_origin, origin_x, origin_y, width, height, bits_per_pixel): """Make a IGuestScreenInfo object with the provided parameters. in display of type int The number of the guest display. in status of type :class:`GuestMon...	[ "def", "create_guest_screen_info", "(", "self", ",", "display", ",", "status", ",", "primary", ",", "change_origin", ",", "origin_x", ",", "origin_y", ",", "width", ",", "height", ",", "bits_per_pixel", ")", ":", "if", "not", "isinstance", "(", "display", ",...	44.672414	23.293103
def sample_outcomes(probs, n): """ For a discrete probability distribution ``probs`` with outcomes 0, 1, ..., k-1 draw ``n`` random samples. :param list probs: A list of probabilities. :param Number n: The number of random samples to draw. :return: An array of samples drawn from distribution pr...	[ "def", "sample_outcomes", "(", "probs", ",", "n", ")", ":", "dist", "=", "np", ".", "cumsum", "(", "probs", ")", "rs", "=", "np", ".", "random", ".", "rand", "(", "n", ")", "return", "np", ".", "array", "(", "[", "(", "np", ".", "where", "(", ...	37.692308	20.153846
def deepnn(x): """deepnn builds the graph for a deep net for classifying digits. Args: x: an input tensor with the dimensions (N_examples, 784), where 784 is the number of pixels in a standard MNIST image. Returns: A tuple (y, keep_prob). y is a tensor of shape (N_examples, 10)...	[ "def", "deepnn", "(", "x", ")", ":", "# Reshape to use within a convolutional neural net.", "# Last dimension is for \"features\" - there is only one here, since images", "# are grayscale -- it would be 3 for an RGB image, 4 for RGBA, etc.", "with", "tf", ".", "name_scope", "(", "\"resha...	39.032787	20.737705
def prep_db_parallel(samples, parallel_fn): """Prepares gemini databases in parallel, handling jointly called populations. """ batch_groups, singles, out_retrieve, extras = _group_by_batches(samples, _has_variant_calls) to_process = [] has_batches = False for (name, caller), info in batch_groups...	[ "def", "prep_db_parallel", "(", "samples", ",", "parallel_fn", ")", ":", "batch_groups", ",", "singles", ",", "out_retrieve", ",", "extras", "=", "_group_by_batches", "(", "samples", ",", "_has_variant_calls", ")", "to_process", "=", "[", "]", "has_batches", "="...	41.241379	16.034483
def set_attrs(self, attrs): """Set model attributes, e.g. input resistance of a cell.""" self.attrs.update(attrs) self._backend.set_attrs(attrs)	[ "def", "set_attrs", "(", "self", ",", "", "", "attrs", ")", ":", "self", ".", "attrs", ".", "update", "(", "attrs", ")", "self", ".", "_backend", ".", "set_attrs", "(", "", "", "attrs", ")" ]	42.25	4.75
def delete_cell(self, key): """Deletes key cell""" try: self.code_array.pop(key) except KeyError: pass self.grid.code_array.result_cache.clear()	[ "def", "delete_cell", "(", "self", ",", "key", ")", ":", "try", ":", "self", ".", "code_array", ".", "pop", "(", "key", ")", "except", "KeyError", ":", "pass", "self", ".", "grid", ".", "code_array", ".", "result_cache", ".", "clear", "(", ")" ]	19.5	21.3
def _setup(self, delete=True): """Create a function instance and execute setup. Args: delete (bool): Delete buffered variables. """ if delete: self.clear() with nn.context_scope(self.ctx): outputs = self.func( *(self.inputs_f ...	[ "def", "_setup", "(", "self", ",", "delete", "=", "True", ")", ":", "if", "delete", ":", "self", ".", "clear", "(", ")", "with", "nn", ".", "context_scope", "(", "self", ".", "ctx", ")", ":", "outputs", "=", "self", ".", "func", "(", "*", "(", ...	32.111111	13.722222
def ensure_path_exists(path, args): '''Like os.makedirs but keeps quiet if path already exists''' if os.path.exists(path): return os.makedirs(path, args)	[ "def", "ensure_path_exists", "(", "path", ",", "", "args", ")", ":", "if", "os", ".", "path", ".", "exists", "(", "path", ")", ":", "return", "os", ".", "makedirs", "(", "path", ",", "", "args", ")" ]	28.5	19.833333
def setup(self): """Additional setup steps.""" LOGGER.info('Tinman v%s starting up with Tornado v%s', __version__, tornado_version) # Setup debugging and paths self.enable_debug() self.set_base_path(os.getcwd()) self.insert_paths() # Setup chi...	[ "def", "setup", "(", "self", ")", ":", "LOGGER", ".", "info", "(", "'Tinman v%s starting up with Tornado v%s'", ",", "__version__", ",", "tornado_version", ")", "# Setup debugging and paths", "self", ".", "enable_debug", "(", ")", "self", ".", "set_base_path", "(", ...	40.1	12.85
def get_signed_query_params_v2(credentials, expiration, string_to_sign): """Gets query parameters for creating a signed URL. :type credentials: :class:`google.auth.credentials.Signing` :param credentials: The credentials used to create a private key for signing text. :type expi...	[ "def", "get_signed_query_params_v2", "(", "credentials", ",", "expiration", ",", "string_to_sign", ")", ":", "ensure_signed_credentials", "(", "credentials", ")", "signature_bytes", "=", "credentials", ".", "sign_bytes", "(", "string_to_sign", ")", "signature", "=", "...	36.758621	20.137931
def expand_state_definition(source, loc, tokens): """ Parse action to convert statemachine to corresponding Python classes and methods """ indent = " " * (pp.col(loc, source) - 1) statedef = [] # build list of states states = set() fromTo = {} for tn in tokens.transitions: s...	[ "def", "expand_state_definition", "(", "source", ",", "loc", ",", "tokens", ")", ":", "indent", "=", "\" \"", "*", "(", "pp", ".", "col", "(", "loc", ",", "source", ")", "-", "1", ")", "statedef", "=", "[", "]", "# build list of states", "states", "=",...	31.275862	19.896552
def name(username): """Display / set / update the user name.""" if not username: click.secho(dtool_config.utils.get_username(CONFIG_PATH)) else: username_str = " ".join(username) click.secho(dtool_config.utils.set_username(CONFIG_PATH, username_str))	[ "def", "name", "(", "username", ")", ":", "if", "not", "username", ":", "click", ".", "secho", "(", "dtool_config", ".", "utils", ".", "get_username", "(", "CONFIG_PATH", ")", ")", "else", ":", "username_str", "=", "\" \"", ".", "join", "(", "username", ...	40	19.571429
def get_acl(self, key_name='', headers=None, version_id=None): """returns a bucket's acl. We include a version_id argument to support a polymorphic interface for callers, however, version_id is not relevant for Google Cloud Storage buckets and is therefore ignored here.""" ...	[ "def", "get_acl", "(", "self", ",", "key_name", "=", "''", ",", "headers", "=", "None", ",", "version_id", "=", "None", ")", ":", "return", "self", ".", "get_acl_helper", "(", "key_name", ",", "headers", ",", "STANDARD_ACL", ")" ]	63.333333	18
def connect(self): """Return "dummy" connection.""" log.critical('NEVER USE THIS CODE FOR REAL-LIFE USE-CASES!!!') log.critical('ONLY FOR DEBUGGING AND TESTING!!!') # The code below uses HARD-CODED secret key - and should be used ONLY # for GnuPG integration tests (e.g. when no r...	[ "def", "connect", "(", "self", ")", ":", "log", ".", "critical", "(", "'NEVER USE THIS CODE FOR REAL-LIFE USE-CASES!!!'", ")", "log", ".", "critical", "(", "'ONLY FOR DEBUGGING AND TESTING!!!'", ")", "# The code below uses HARD-CODED secret key - and should be used ONLY", "# fo...	52	22
def save(self, data, args, *kwargs): """ inserts data (dict or list of dicts) expected kwargs: collection_name: by default uses MONGODB_DEFAULT_COLLECTION w: by default set to 0 to disable write acknowledgement assumes that data has been verified / validated ...	[ "def", "save", "(", "self", ",", "data", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "try", ":", "collection_name", "=", "kwargs", ".", "get", "(", "'collection_name'", ",", "MONGODB_DEFAULT_COLLECTION", ")", "w", "=", "kwargs", ".", "get", "(...	39.869565	15.521739
def _exit_now_changed(self, name, old, new): """stop eventloop when exit_now fires""" if new: loop = ioloop.IOLoop.instance() loop.add_timeout(time.time()+0.1, loop.stop)	[ "def", "_exit_now_changed", "(", "self", ",", "name", ",", "old", ",", "new", ")", ":", "if", "new", ":", "loop", "=", "ioloop", ".", "IOLoop", ".", "instance", "(", ")", "loop", ".", "add_timeout", "(", "time", ".", "time", "(", ")", "+", "0.1", ...	41.2	9.6
def sync_ik_robot(self, joint_positions, simulate=False, sync_last=True): """ Force the internal robot model to match the provided joint angles. Args: joint_positions (list): a list or flat numpy array of joint positions. simulate (bool): If True, actually use physics si...	[ "def", "sync_ik_robot", "(", "self", ",", "joint_positions", ",", "simulate", "=", "False", ",", "sync_last", "=", "True", ")", ":", "num_joints", "=", "len", "(", "joint_positions", ")", "if", "not", "sync_last", ":", "num_joints", "-=", "1", "for", "i", ...	41.965517	17.344828
def install_all_labels(stdout=None): """ Discover all subclasses of StructuredNode in your application and execute install_labels on each. Note: code most be loaded (imported) in order for a class to be discovered. :param stdout: output stream :return: None """ if not stdout: stdou...	[ "def", "install_all_labels", "(", "stdout", "=", "None", ")", ":", "if", "not", "stdout", ":", "stdout", "=", "sys", ".", "stdout", "def", "subsub", "(", "kls", ")", ":", "# recursively return all subclasses", "return", "kls", ".", "__subclasses__", "(", ")"...	30.074074	26.148148
def write_file(environ, term='bash', out_dir=None, tree_dir=None): ''' Write a tree environment file Loops over the tree environ and writes them out to a bash, tsch, or modules file Parameters: environ (dict): The tree dictionary environment term (str): The type...	[ "def", "write_file", "(", "environ", ",", "term", "=", "'bash'", ",", "out_dir", "=", "None", ",", "tree_dir", "=", "None", ")", ":", "# get the proper name, header and file extension", "name", "=", "environ", "[", "'default'", "]", "[", "'name'", "]", "header...	34.229167	18.520833
def Nu_cylinder_Whitaker(Re, Pr, mu=None, muw=None): r'''Calculates Nusselt number for crossflow across a single tube as shown in [1]_ at a specified `Re` and `Pr`, both evaluated at the free stream temperature. Recommends a viscosity exponent correction of 0.25, which is applied only if provided. Also ...	[ "def", "Nu_cylinder_Whitaker", "(", "Re", ",", "Pr", ",", "mu", "=", "None", ",", "muw", "=", "None", ")", ":", "Nu", "=", "(", "0.4", "", "Re", "", "0.5", "+", "0.06", "", "Re", "*", "(", "2", "/", "3.", ")", ")", "", "Pr", "**", "0....	36.211538	26.25
def transp(I,J,c,d,M): """transp -- model for solving the transportation problem Parameters: I - set of customers J - set of facilities c[i,j] - unit transportation cost on arc (i,j) d[i] - demand at node i M[j] - capacity Returns a model, ready to be solved. """ ...	[ "def", "transp", "(", "I", ",", "J", ",", "c", ",", "d", ",", "M", ")", ":", "model", "=", "Model", "(", "\"transportation\"", ")", "# Create variables", "x", "=", "{", "}", "for", "i", "in", "I", ":", "for", "j", "in", "J", ":", "x", "[", "i...	25.628571	24.942857
def calc_system(self, x, Y, Y_agg=None, L=None, population=None): """ Calculates the missing part of the extension plus accounts This method allows to specify an aggregated Y_agg for the account calculation (see Y_agg below). However, the full Y needs to be specified for the calculation...	[ "def", "calc_system", "(", "self", ",", "x", ",", "Y", ",", "Y_agg", "=", "None", ",", "L", "=", "None", ",", "population", "=", "None", ")", ":", "if", "Y_agg", "is", "None", ":", "try", ":", "Y_agg", "=", "Y", ".", "sum", "(", "level", "=", ...	42.016575	19.104972
def get_tweet(self, id): """ Get an existing tweet. :param id: ID of the tweet in question :return: Tweet object. None if not found """ try: return Tweet(self._client.get_status(id=id)._json) except TweepError as e: if e.api_code == TWITTE...	[ "def", "get_tweet", "(", "self", ",", "id", ")", ":", "try", ":", "return", "Tweet", "(", "self", ".", "_client", ".", "get_status", "(", "id", "=", "id", ")", ".", "_json", ")", "except", "TweepError", "as", "e", ":", "if", "e", ".", "api_code", ...	29.076923	14.923077
def parseFASTACommandLineOptions(args): """ Examine parsed command-line options and return a Reads instance. @param args: An argparse namespace, as returned by the argparse C{parse_args} function. @return: A C{Reads} subclass instance, depending on the type of FASTA file given. """ ...	[ "def", "parseFASTACommandLineOptions", "(", "args", ")", ":", "# Set default FASTA type.", "if", "not", "(", "args", ".", "fasta", "or", "args", ".", "fastq", "or", "args", ".", "fasta_ss", ")", ":", "args", ".", "fasta", "=", "True", "readClass", "=", "re...	34.791667	18.791667
def longest_overlap(ovls): """ From a list of overlays if any overlap keep the longest. """ # Ovls know how to compare to each other. ovls = sorted(ovls) # I know this could be better but ovls wont be more than 50 or so. for i, s in enumerate(ovls): passing = True for l in...	[ "def", "longest_overlap", "(", "ovls", ")", ":", "# Ovls know how to compare to each other.", "ovls", "=", "sorted", "(", "ovls", ")", "# I know this could be better but ovls wont be more than 50 or so.", "for", "i", ",", "s", "in", "enumerate", "(", "ovls", ")", ":", ...	27.1	20.1
def _simple_dispatch(self, name, params): """ Dispatch method """ try: # Internal method func = self.funcs[name] except KeyError: # Other method pass else: # Internal method found if isinstance(params...	[ "def", "_simple_dispatch", "(", "self", ",", "name", ",", "params", ")", ":", "try", ":", "# Internal method", "func", "=", "self", ".", "funcs", "[", "name", "]", "except", "KeyError", ":", "# Other method", "pass", "else", ":", "# Internal method found", "...	28.4	14.4
def prev_img_ws(self, ws, loop=True): """Go to the previous image in the focused channel in the workspace. """ channel = self.get_active_channel_ws(ws) if channel is None: return channel.prev_image() return True	[ "def", "prev_img_ws", "(", "self", ",", "ws", ",", "loop", "=", "True", ")", ":", "channel", "=", "self", ".", "get_active_channel_ws", "(", "ws", ")", "if", "channel", "is", "None", ":", "return", "channel", ".", "prev_image", "(", ")", "return", "Tru...	33	9.875
def kalman_filter(kalman_state, old_indices, coordinates, q, r): '''Return the kalman filter for the features in the new frame kalman_state - state from last frame old_indices - the index per feature in the last frame or -1 for new coordinates - Coordinates of the features in the new frame. q - ...	[ "def", "kalman_filter", "(", "kalman_state", ",", "old_indices", ",", "coordinates", ",", "q", ",", "r", ")", ":", "assert", "isinstance", "(", "kalman_state", ",", "KalmanState", ")", "old_indices", "=", "np", ".", "array", "(", "old_indices", ")", "if", ...	41.421053	22.669173
def _move_content_to(self, other_tc): """ Append the content of this cell to other_tc, leaving this cell with a single empty ``<w:p>`` element. """ if other_tc is self: return if self._is_empty: return other_tc._remove_trailing_empty_p() ...	[ "def", "_move_content_to", "(", "self", ",", "other_tc", ")", ":", "if", "other_tc", "is", "self", ":", "return", "if", "self", ".", "_is_empty", ":", "return", "other_tc", ".", "_remove_trailing_empty_p", "(", ")", "# appending moves each element from self to other...	37.666667	12.066667
def get_serializer_class(self, view, method_func): """ Try to get the serializer class from view method. If view method don't have request serializer, fallback to serializer_class on view class """ if hasattr(method_func, 'request_serializer'): return getattr(method_f...	[ "def", "get_serializer_class", "(", "self", ",", "view", ",", "method_func", ")", ":", "if", "hasattr", "(", "method_func", ",", "'request_serializer'", ")", ":", "return", "getattr", "(", "method_func", ",", "'request_serializer'", ")", "if", "hasattr", "(", ...	37.533333	20.2
def iri_to_uri(value, normalize=False): """ Encodes a unicode IRI into an ASCII byte string URI :param value: A unicode string of an IRI :param normalize: A bool that controls URI normalization :return: A byte string of the ASCII-encoded URI """ if not isinstance(...	[ "def", "iri_to_uri", "(", "value", ",", "normalize", "=", "False", ")", ":", "if", "not", "isinstance", "(", "value", ",", "str_cls", ")", ":", "raise", "TypeError", "(", "unwrap", "(", "'''\n value must be a unicode string, not %s\n '''", ",",...	33.061728	20.024691
def from_schema(cls, schema, args, kwargs): """ Construct a resolver from a JSON schema object. :argument schema schema: the referring schema :rtype: :class:`RefResolver` """ return cls(schema.get(u"id", u""), schema, args, **kwargs)	[ "def", "from_schema", "(", "cls", ",", "schema", ",", "", "args", ",", "", "", "kwargs", ")", ":", "return", "cls", "(", "schema", ".", "get", "(", "u\"id\"", ",", "u\"\"", ")", ",", "schema", ",", "", "args", ",", "", "", "kwargs", ")" ]	27.9	18.5
def get_backend_class(): """Return reference to the configured backed class.""" # this will (intentionally) blow up if the setting does not exist assert hasattr(settings, 'INBOUND_EMAIL_PARSER') assert getattr(settings, 'INBOUND_EMAIL_PARSER') is not None package, klass = settings.INBOUND_EMAIL_PAR...	[ "def", "get_backend_class", "(", ")", ":", "# this will (intentionally) blow up if the setting does not exist", "assert", "hasattr", "(", "settings", ",", "'INBOUND_EMAIL_PARSER'", ")", "assert", "getattr", "(", "settings", ",", "'INBOUND_EMAIL_PARSER'", ")", "is", "not", ...	44.444444	17.555556
def load(cls, path): """ Load a SOM from a JSON file saved with this package. Parameters ---------- path : str The path to the JSON file. Returns ------- s : cls A som of the specified class. """ data = json.load(...	[ "def", "load", "(", "cls", ",", "path", ")", ":", "data", "=", "json", ".", "load", "(", "open", "(", "path", ")", ")", "weights", "=", "data", "[", "'weights'", "]", "weights", "=", "np", ".", "asarray", "(", "weights", ",", "dtype", "=", "np", ...	25.757576	18.484848
def persist_experiment(experiment): """ Persist this experiment in the benchbuild database. Args: experiment: The experiment we want to persist. """ from benchbuild.utils.schema import Experiment, Session session = Session() cfg_exp = experiment.id LOG.debug("Using experiment ...	[ "def", "persist_experiment", "(", "experiment", ")", ":", "from", "benchbuild", ".", "utils", ".", "schema", "import", "Experiment", ",", "Session", "session", "=", "Session", "(", ")", "cfg_exp", "=", "experiment", ".", "id", "LOG", ".", "debug", "(", "\"...	25.571429	19.628571
def read_nb(filename, solution) -> nbformat.NotebookNode: """ Takes in a filename of a notebook and returns a notebook object containing only the cell outputs to export. """ with open(filename, 'r') as f: nb = nbformat.read(f, as_version=4) email = find_student_email(nb) preamble = ...	[ "def", "read_nb", "(", "filename", ",", "solution", ")", "->", "nbformat", ".", "NotebookNode", ":", "with", "open", "(", "filename", ",", "'r'", ")", "as", "f", ":", "nb", "=", "nbformat", ".", "read", "(", "f", ",", "as_version", "=", "4", ")", "...	32.894737	16.894737
def is_dataframe(data): """ Checks whether the supplied data is of DataFrame type. """ dd = None if 'dask' in sys.modules and 'pandas' in sys.modules: import dask.dataframe as dd return((pd is not None and isinstance(data, pd.DataFrame)) or (dd is not None and isinstance(data, ...	[ "def", "is_dataframe", "(", "data", ")", ":", "dd", "=", "None", "if", "'dask'", "in", "sys", ".", "modules", "and", "'pandas'", "in", "sys", ".", "modules", ":", "import", "dask", ".", "dataframe", "as", "dd", "return", "(", "(", "pd", "is", "not", ...	36.333333	14.555556
def proportional_weights(self, fraction_stdev=1.0, wmax=100.0, leave_zero=True): """setup weights inversely proportional to the observation value Parameters ---------- fraction_stdev : float the fraction portion of the observation va...	[ "def", "proportional_weights", "(", "self", ",", "fraction_stdev", "=", "1.0", ",", "wmax", "=", "100.0", ",", "leave_zero", "=", "True", ")", ":", "new_weights", "=", "[", "]", "for", "oval", ",", "ow", "in", "zip", "(", "self", ".", "observation_data",...	35.25	14.607143
def encode(self, response): """Encode a response to a L{WebResponse}. @raises EncodingError: When I can't figure out how to encode this message. """ encode_as = response.whichEncoding() if encode_as == ENCODE_KVFORM: wr = self.responseFactory(body=respons...	[ "def", "encode", "(", "self", ",", "response", ")", ":", "encode_as", "=", "response", ".", "whichEncoding", "(", ")", "if", "encode_as", "==", "ENCODE_KVFORM", ":", "wr", "=", "self", ".", "responseFactory", "(", "body", "=", "response", ".", "encodeToKVF...	42.565217	14.913043
def collection_callback(result=None): """ :type result: opendnp3.CommandPointResult """ print("Header: {0} \| Index: {1} \| State: {2} \| Status: {3}".format( result.headerIndex, result.index, opendnp3.CommandPointStateToString(result.state), opendnp3.CommandStatusToString...	[ "def", "collection_callback", "(", "result", "=", "None", ")", ":", "print", "(", "\"Header: {0} \| Index: {1} \| State: {2} \| Status: {3}\"", ".", "format", "(", "result", ".", "headerIndex", ",", "result", ".", "index", ",", "opendnp3", ".", "CommandPointStateToStri...	33.3	13.7
def get_currentDim(self): ''' returns the current dimensions of the object ''' selfDim = self._dimensions.copy() if not isinstance(selfDim,dimStr): if selfDim.has_key('_ndims') : nself = selfDim.pop('_ndims') else : self.warning(1,...	[ "def", "get_currentDim", "(", "self", ")", ":", "selfDim", "=", "self", ".", "_dimensions", ".", "copy", "(", ")", "if", "not", "isinstance", "(", "selfDim", ",", "dimStr", ")", ":", "if", "selfDim", ".", "has_key", "(", "'_ndims'", ")", ":", "nself", ...	43.076923	19.230769
def edit_preferences(self, resource): """Edit preferences in /usr/cdrouter-data/etc/config.yml. :param resource: :class:`system.Preferences <system.Preferences>` object :return: :class:`system.Preferences <system.Preferences>` object :rtype: system.Preferences """ schema...	[ "def", "edit_preferences", "(", "self", ",", "resource", ")", ":", "schema", "=", "PreferencesSchema", "(", ")", "json", "=", "self", ".", "service", ".", "encode", "(", "schema", ",", "resource", ")", "schema", "=", "PreferencesSchema", "(", ")", "resp", ...	41.615385	16.846154
def toggle_grid(self, evt=None, show=None): "toggle grid display" if show is None: show = not self.conf.show_grid self.conf.enable_grid(show)	[ "def", "toggle_grid", "(", "self", ",", "evt", "=", "None", ",", "show", "=", "None", ")", ":", "if", "show", "is", "None", ":", "show", "=", "not", "self", ".", "conf", ".", "show_grid", "self", ".", "conf", ".", "enable_grid", "(", "show", ")" ]	34.6	7.4
def get_HDX_code_from_location_partial(location, locations=None, configuration=None): # type: (str, Optional[List[Dict]], Optional[Configuration]) -> Tuple[Optional[str], bool] """Get HDX code for location Args: location (str): Location for which to get HDX code location...	[ "def", "get_HDX_code_from_location_partial", "(", "location", ",", "locations", "=", "None", ",", "configuration", "=", "None", ")", ":", "# type: (str, Optional[List[Dict]], Optional[Configuration]) -> Tuple[Optional[str], bool]", "hdx_code", "=", "Locations", ".", "get_HDX_co...	44.769231	28.961538
def answerUnsupported(self, message, preferred_association_type=None, preferred_session_type=None): """Respond to this request indicating that the association type or association session type is not supported.""" if self.message.isOpenID1(): raise ProtocolEr...	[ "def", "answerUnsupported", "(", "self", ",", "message", ",", "preferred_association_type", "=", "None", ",", "preferred_session_type", "=", "None", ")", ":", "if", "self", ".", "message", ".", "isOpenID1", "(", ")", ":", "raise", "ProtocolError", "(", "self",...	40.2	17.85
def str2date(self, datestr): """Parse date from string. If no template matches this string, raise Error. Please go https://github.com/MacHu-GWU/rolex-project/issues submit your date string. I 'll update templates asap. This method is faster than :meth:`dateutil.parser.parse`. ...	[ "def", "str2date", "(", "self", ",", "datestr", ")", ":", "if", "datestr", "is", "None", ":", "raise", "ValueError", "(", "\"Parser must be a string or character stream, not NoneType\"", ")", "# try default date template", "try", ":", "return", "datetime", ".", "strpt...	31.536585	18.585366
def pipeline(line, cell=None): """Implements the pipeline cell magic for ipython notebooks. The supported syntax is: %%pipeline <command> [<args>] <cell> or: %pipeline <command> [<args>] Use %pipeline --help for a list of commands, or %pipeline <command> --help for help on a specific command....	[ "def", "pipeline", "(", "line", ",", "cell", "=", "None", ")", ":", "return", "google", ".", "datalab", ".", "utils", ".", "commands", ".", "handle_magic_line", "(", "line", ",", "cell", ",", "_pipeline_parser", ")" ]	24.875	25.0625
def end_of_history(self, e): # (M->) u'''Move to the end of the input history, i.e., the line currently being entered.''' self._history.end_of_history(self.l_buffer) self.finalize()	[ "def", "end_of_history", "(", "self", ",", "e", ")", ":", "# (M->)\r", "self", ".", "_history", ".", "end_of_history", "(", "self", ".", "l_buffer", ")", "self", ".", "finalize", "(", ")" ]	42.8	16
def decode(var, encoding): """ If not already unicode, decode it. """ if PY2: if isinstance(var, unicode): ret = var elif isinstance(var, str): if encoding: ret = var.decode(encoding) else: ret = unicode(var) els...	[ "def", "decode", "(", "var", ",", "encoding", ")", ":", "if", "PY2", ":", "if", "isinstance", "(", "var", ",", "unicode", ")", ":", "ret", "=", "var", "elif", "isinstance", "(", "var", ",", "str", ")", ":", "if", "encoding", ":", "ret", "=", "var...	22.647059	13.705882
def lookup_matching(self, urls): """Get matching hosts for the given URLs. :param urls: an iterable containing URLs :returns: instances of AddressListItem representing listed hosts matching the ones used by the given URLs :raises InvalidURLError: if there are any invalid URLs in...	[ "def", "lookup_matching", "(", "self", ",", "urls", ")", ":", "hosts", "=", "(", "urlparse", "(", "u", ")", ".", "hostname", "for", "u", "in", "urls", ")", "for", "val", "in", "hosts", ":", "item", "=", "self", ".", "lookup", "(", "val", ")", "if...	36.785714	13.928571
def _add_asset_content(self, asset_id, asset_data=None, asset_url=None, asset_content_type=None, asset_label=None): """stub""" rm = self.my_osid_object_form._get_provide...	[ "def", "_add_asset_content", "(", "self", ",", "asset_id", ",", "asset_data", "=", "None", ",", "asset_url", "=", "None", ",", "asset_content_type", "=", "None", ",", "asset_label", "=", "None", ")", ":", "rm", "=", "self", ".", "my_osid_object_form", ".", ...	39.8	18.111111
def generate_base(model, model_dict, config, manifest, source_config, provider, adapter=None): """Generate the common aspects of the config dict.""" if provider is None: raise dbt.exceptions.InternalException( "Invalid provider given to context: {}".format(provider)) t...	[ "def", "generate_base", "(", "model", ",", "model_dict", ",", "config", ",", "manifest", ",", "source_config", ",", "provider", ",", "adapter", "=", "None", ")", ":", "if", "provider", "is", "None", ":", "raise", "dbt", ".", "exceptions", ".", "InternalExc...	32.55	16.433333
def ExtractEvents(self, parser_mediator, registry_key, **kwargs): """Extracts events from a Windows Registry key. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. registry_key (dfwinreg.WinRegistryKey): Windows ...	[ "def", "ExtractEvents", "(", "self", ",", "parser_mediator", ",", "registry_key", ",", "", "", "kwargs", ")", ":", "values_dict", "=", "{", "}", "if", "registry_key", ".", "number_of_values", "==", "0", ":", "values_dict", "[", "'Value'", "]", "=", "'No ...	38.811321	21.037736
def send(messages=None, conf=None, parse_mode=None, disable_web_page_preview=False, files=None, images=None, captions=None, locations=None, timeout=30): """Send data over Telegram. All arguments are optional. Always use this function with explicit keyword arguments. So `send(messages=["Hello!"])` ...	[ "def", "send", "(", "messages", "=", "None", ",", "conf", "=", "None", ",", "parse_mode", "=", "None", ",", "disable_web_page_preview", "=", "False", ",", "files", "=", "None", ",", "images", "=", "None", ",", "captions", "=", "None", ",", "locations", ...	42.902174	26.619565
def DEFINE_alias(name, original_name, flag_values=FLAGS, module_name=None): # pylint: disable=g-bad-name """Defines an alias flag for an existing one. Args: name: A string, name of the alias flag. original_name: A string, name of the original flag. flag_values: FlagValues object with which the flag wi...	[ "def", "DEFINE_alias", "(", "name", ",", "original_name", ",", "flag_values", "=", "FLAGS", ",", "module_name", "=", "None", ")", ":", "# pylint: disable=g-bad-name", "if", "original_name", "not", "in", "flag_values", ":", "raise", "UnrecognizedFlagError", "(", "o...	33.95122	21.804878
def results_to_csv(query_name, kwargs): """ Generate CSV from result data """ query = get_result_set(query_name, kwargs) result = query.result columns = list(result[0].keys()) data = [tuple(row.values()) for row in result] frame = tablib.Dataset() frame.headers = columns for row ...	[ "def", "results_to_csv", "(", "query_name", ",", "", "", "kwargs", ")", ":", "query", "=", "get_result_set", "(", "query_name", ",", "", "", "kwargs", ")", "result", "=", "query", ".", "result", "columns", "=", "list", "(", "result", "[", "0", "]",...	29.923077	10.230769
def get_argparser(): """ Get the command line argument parser. """ parser = argparse.ArgumentParser("twarc") parser.add_argument('command', choices=commands) parser.add_argument('query', nargs='?', default=None) parser.add_argument("--log", dest="log", default="twarc...	[ "def", "get_argparser", "(", ")", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", "\"twarc\"", ")", "parser", ".", "add_argument", "(", "'command'", ",", "choices", "=", "commands", ")", "parser", ".", "add_argument", "(", "'query'", ",", "nargs"...	56.016393	21.42623
def _detect_xerial_stream(payload): """Detects if the data given might have been encoded with the blocking mode of the xerial snappy library. This mode writes a magic header of the format: +--------+--------------+------------+---------+--------+ \| Marker \| Magic String \| Nu...	[ "def", "_detect_xerial_stream", "(", "payload", ")", ":", "if", "len", "(", "payload", ")", ">", "16", ":", "header", "=", "struct", ".", "unpack", "(", "'!'", "+", "_XERIAL_V1_FORMAT", ",", "bytes", "(", "payload", ")", "[", ":", "16", "]", ")", "re...	46.5	24.5
def ecg_process(ecg, rsp=None, sampling_rate=1000, filter_type="FIR", filter_band="bandpass", filter_frequency=[3, 45], segmenter="hamilton", quality_model="default", hrv_features=["time", "frequency"], age=None, sex=None, position=None): """ Automated processing of ECG and RSP signals. Parameters ----...	[ "def", "ecg_process", "(", "ecg", ",", "rsp", "=", "None", ",", "sampling_rate", "=", "1000", ",", "filter_type", "=", "\"FIR\"", ",", "filter_band", "=", "\"bandpass\"", ",", "filter_frequency", "=", "[", "3", ",", "45", "]", ",", "segmenter", "=", "\"h...	84.910569	74.471545
def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types): """ See :meth:`superclass method <.base.GroundShakingIntensityModel.get_mean_and_stddevs>` for spec of input and result values. """ # get mean and std using the superclass mean, stddevs = super...	[ "def", "get_mean_and_stddevs", "(", "self", ",", "sites", ",", "rup", ",", "dists", ",", "imt", ",", "stddev_types", ")", ":", "# get mean and std using the superclass", "mean", ",", "stddevs", "=", "super", "(", ")", ".", "get_mean_and_stddevs", "(", "sites", ...	35.6	15.733333
def set_quickchart_resource(self, resource): # type: (Union[hdx.data.resource.Resource,Dict,str,int]) -> bool """Set the resource that will be used for displaying QuickCharts in dataset preview Args: resource (Union[hdx.data.resource.Resource,Dict,str,int]): Either resource id or na...	[ "def", "set_quickchart_resource", "(", "self", ",", "resource", ")", ":", "# type: (Union[hdx.data.resource.Resource,Dict,str,int]) -> bool", "if", "isinstance", "(", "resource", ",", "int", ")", "and", "not", "isinstance", "(", "resource", ",", "bool", ")", ":", "r...	45.121212	22.939394
def password_attributes_character_restriction_numeric(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") password_attributes = ET.SubElement(config, "password-attributes", xmlns="urn:brocade.com:mgmt:brocade-aaa") character_restriction = ET.SubElement(passw...	[ "def", "password_attributes_character_restriction_numeric", "(", "self", ",", "", "", "kwargs", ")", ":", "config", "=", "ET", ".", "Element", "(", "\"config\"", ")", "password_attributes", "=", "ET", ".", "SubElement", "(", "config", ",", "\"password-attributes...	50.181818	23.181818
def grab_zipped_url(zipped_url, ensure=True, appname='utool', download_dir=None, force_commonprefix=True, cleanup=False, redownload=False, spoof=False): r""" downloads and unzips the url Args: zipped_url (str): url which must be either a .zip of a .tar.gz fil...	[ "def", "grab_zipped_url", "(", "zipped_url", ",", "ensure", "=", "True", ",", "appname", "=", "'utool'", ",", "download_dir", "=", "None", ",", "force_commonprefix", "=", "True", ",", "cleanup", "=", "False", ",", "redownload", "=", "False", ",", "spoof", ...	38.268657	16.19403
def _last_index(x, default_dim): """Returns the last dimension's index or default_dim if x has no shape.""" if x.get_shape().ndims is not None: return len(x.get_shape()) - 1 else: return default_dim	[ "def", "_last_index", "(", "x", ",", "default_dim", ")", ":", "if", "x", ".", "get_shape", "(", ")", ".", "ndims", "is", "not", "None", ":", "return", "len", "(", "x", ".", "get_shape", "(", ")", ")", "-", "1", "else", ":", "return", "default_dim" ...	34.5	11.5
def get_comment_replies(self, args, *kwargs): """Return a get_content generator for inboxed comment replies. The additional parameters are passed directly into :meth:`.get_content`. Note: the `url` parameter cannot be altered. """ return self.get_content(self.config['comment_...	[ "def", "get_comment_replies", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "get_content", "(", "self", ".", "config", "[", "'comment_replies'", "]", ",", "", "args", ",", "", "", "kwargs", ")" ]	41.222222	18.888889
def assign_category(salts): """ Identifies IL type based on name/str Parameters ---------- salts: pandas DataFrame dataframe containing column with cation name Returns ---------- salts: pandas DataFrame returns the same dataframe with categories """ if "name-cat...	[ "def", "assign_category", "(", "salts", ")", ":", "if", "\"name-cation\"", "in", "salts", ".", "columns", ":", "label", "=", "\"name-cation\"", "elif", "\"Molecular Relative\"", "in", "salts", ".", "columns", ":", "label", "=", "\"Molecular Relative\"", "else", ...	33.466667	12.4
def is_coincident(self, other, keys = None): """ Return True if any segment in any list in self intersects any segment in any list in other. If the optional keys argument is not None, then it should be an iterable of keys and only segment lists for those keys will be considered in the test (instead of rais...	[ "def", "is_coincident", "(", "self", ",", "other", ",", "keys", "=", "None", ")", ":", "if", "keys", "is", "not", "None", ":", "keys", "=", "set", "(", "keys", ")", "self", "=", "tuple", "(", "self", "[", "key", "]", "for", "key", "in", "set", ...	37.576923	16.269231
def classes(self, values): """Classes setter.""" if isinstance(values, dict): if self.__data is not None and len(self.__data) != len(values): raise ValueError( 'number of samples do not match the previously assigned data') elif set(self.keys) !...	[ "def", "classes", "(", "self", ",", "values", ")", ":", "if", "isinstance", "(", "values", ",", "dict", ")", ":", "if", "self", ".", "__data", "is", "not", "None", "and", "len", "(", "self", ".", "__data", ")", "!=", "len", "(", "values", ")", ":...	46.5	20.083333
def normalizeBPointType(value): """ Normalizes bPoint type. * value must be an string. * value must be one of the following: +--------+ \| corner \| +--------+ \| curve \| +--------+ * Returned value will be an unencoded ``unicode`` string. """ allowedTy...	[ "def", "normalizeBPointType", "(", "value", ")", ":", "allowedTypes", "=", "[", "'corner'", ",", "'curve'", "]", "if", "not", "isinstance", "(", "value", ",", "basestring", ")", ":", "raise", "TypeError", "(", "\"bPoint type must be a string, not %s.\"", "%", "t...	28.130435	17
def _get_example_from_basic_type(type): """Get example from the given type. Args: type: the type you want an example of. Returns: An array with two example values of the given type. """ if type == 'integer': return [42, 24] elif type ...	[ "def", "_get_example_from_basic_type", "(", "type", ")", ":", "if", "type", "==", "'integer'", ":", "return", "[", "42", ",", "24", "]", "elif", "type", "==", "'number'", ":", "return", "[", "5.5", ",", "5.5", "]", "elif", "type", "==", "'string'", ":"...	31.095238	14.142857
def validNormalizeAttributeValue(self, doc, name, value): """Does the validation related extra step of the normalization of attribute values: If the declared value is not CDATA, then the XML processor must further process the normalized attribute value by discarding any leading an...	[ "def", "validNormalizeAttributeValue", "(", "self", ",", "doc", ",", "name", ",", "value", ")", ":", "if", "doc", "is", "None", ":", "doc__o", "=", "None", "else", ":", "doc__o", "=", "doc", ".", "_o", "ret", "=", "libxml2mod", ".", "xmlValidNormalizeAtt...	57.454545	18.363636
def DEFINE_boolean(flag_name, default_value, docstring): # pylint: disable=invalid-name """Defines a flag of type 'boolean'. Args: flag_name: The name of the flag as a string. default_value: The default value the flag should take as a boolean. docstring: A helpful message explaining the...	[ "def", "DEFINE_boolean", "(", "flag_name", ",", "default_value", ",", "docstring", ")", ":", "# pylint: disable=invalid-name", "# Register a custom function for 'bool' so --flag=True works.", "def", "str2bool", "(", "bool_str", ")", ":", "\"\"\"Return a boolean value from a give ...	35.111111	18.555556
def write_longlong(self, n): """ Write an integer as an unsigned 64-bit value. """ if (n < 0) or (n >= (264)): raise ValueError('Octet out of range 0..264-1') self._flushbits() self.out.write(pack('>Q', n))	[ "def", "write_longlong", "(", "self", ",", "n", ")", ":", "if", "(", "n", "<", "0", ")", "or", "(", "n", ">=", "(", "2", "", "64", ")", ")", ":", "raise", "ValueError", "(", "'Octet out of range 0..264-1'", ")", "self", ".", "_flushbits", "(", ...	29.222222	11.888889
def include_end(self): """ Performs and end of include. """ self.lex = self.filestack[-1][2] self.input_data = self.filestack[-1][3] self.filestack.pop() if not self.filestack: # End of input? return self.filestack[-1][1] += 1 # Increment line coun...	[ "def", "include_end", "(", "self", ")", ":", "self", ".", "lex", "=", "self", ".", "filestack", "[", "-", "1", "]", "[", "2", "]", "self", ".", "input_data", "=", "self", ".", "filestack", "[", "-", "1", "]", "[", "3", "]", "self", ".", "filest...	28.947368	16.684211
def register_event(self, event_type, pattern, handler): """ When ``event_type`` is observed for ``pattern``, triggers ``handler``. For "CHANGE" events, ``pattern`` should be a tuple of ``min_changed_pixels`` and the base screen state. """ if event_type not in self._supported_eve...	[ "def", "register_event", "(", "self", ",", "event_type", ",", "pattern", ",", "handler", ")", ":", "if", "event_type", "not", "in", "self", ".", "_supported_events", ":", "raise", "ValueError", "(", "\"Unsupported event type {}\"", ".", "format", "(", "event_typ...	48.208333	26.5
def select_atoms(indices): '''Select atoms by their indices. You can select the first 3 atoms as follows:: select_atoms([0, 1, 2]) Return the current selection dictionary. ''' rep = current_representation() rep.select({'atoms': Selection(indices, current_system().n_atoms)}) ret...	[ "def", "select_atoms", "(", "indices", ")", ":", "rep", "=", "current_representation", "(", ")", "rep", ".", "select", "(", "{", "'atoms'", ":", "Selection", "(", "indices", ",", "current_system", "(", ")", ".", "n_atoms", ")", "}", ")", "return", "rep",...	25.461538	21.307692
def combinetargets(targets, targetpath, mol_type='nt'): """ Creates a set of all unique sequences in a list of supplied FASTA files. Properly formats headers and sequences to be compatible with local pipelines. Splits hybrid entries. Removes illegal characters. :param targets: fasta gene targets to comb...	[ "def", "combinetargets", "(", "targets", ",", "targetpath", ",", "mol_type", "=", "'nt'", ")", ":", "make_path", "(", "targetpath", ")", "with", "open", "(", "os", ".", "path", ".", "join", "(", "targetpath", ",", "'combinedtargets.fasta'", ")", ",", "'w'"...	56.475	22.95
def batch_get_archive(self, archive_names, default_versions=None): ''' Batch version of :py:meth:`~DataAPI.get_archive` Parameters ---------- archive_names: list Iterable of archive names to retrieve default_versions: str, object, or dict Defa...	[ "def", "batch_get_archive", "(", "self", ",", "archive_names", ",", "default_versions", "=", "None", ")", ":", "# toss prefixes and normalize names", "archive_names", "=", "map", "(", "lambda", "arch", ":", "self", ".", "_normalize_archive_name", "(", "arch", ")", ...	30.691176	25.220588
def rename(self, channel_name, new_name): """ https://api.slack.com/methods/channels.rename """ channel_id = self.get_channel_id(channel_name) self.params.update({ 'channel': channel_id, 'name': new_name, }) return FromUrl('https://slack.c...	[ "def", "rename", "(", "self", ",", "channel_name", ",", "new_name", ")", ":", "channel_id", "=", "self", ".", "get_channel_id", "(", "channel_name", ")", "self", ".", "params", ".", "update", "(", "{", "'channel'", ":", "channel_id", ",", "'name'", ":", ...	41.888889	14.333333
def hypercube(number_of_samples, variables): """ This implements Latin Hypercube Sampling. See https://mathieu.fenniak.net/latin-hypercube-sampling/ for intuitive explanation of what it is :param number_of_samples: number of segments/samples :param variables: initial parameters and conditions (lis...	[ "def", "hypercube", "(", "number_of_samples", ",", "variables", ")", ":", "number_of_dimensions", "=", "len", "(", "variables", ")", "# Split range 0-1 into `nSeg` segments of equal size", "segment_ranges", "=", "[", "]", "for", "i", "in", "range", "(", "number_of_sam...	39.865385	23.557692
def oauth_token_create(self, data, kwargs): "https://developer.zendesk.com/rest_api/docs/core/oauth_tokens#create-token" api_path = "/api/v2/oauth/tokens.json" return self.call(api_path, method="POST", data=data, kwargs)	[ "def", "oauth_token_create", "(", "self", ",", "data", ",", "", "", "kwargs", ")", ":", "api_path", "=", "\"/api/v2/oauth/tokens.json\"", "return", "self", ".", "call", "(", "api_path", ",", "method", "=", "\"POST\"", ",", "data", "=", "data", ",", "*", ...	61.25	21.25
def repeat(coro, times=1, step=1, limit=1, loop=None): """ Executes the coroutine function ``x`` number of times, and accumulates results in order as you would use with ``map``. Execution concurrency is configurable using ``limit`` param. This function is a coroutine. Arguments: coro...	[ "def", "repeat", "(", "coro", ",", "times", "=", "1", ",", "step", "=", "1", ",", "limit", "=", "1", ",", "loop", "=", "None", ")", ":", "assert_corofunction", "(", "coro", "=", "coro", ")", "# Iterate and attach coroutine for defer scheduling", "times", "...	29.615385	23.461538
def mtf_transformer_base(): """Set of hyperparameters.""" hparams = common_hparams.basic_params1() hparams.no_data_parallelism = True hparams.use_fixed_batch_size = True hparams.add_hparam("mtf_mode", True) hparams.batch_size = 64 hparams.max_length = 256 hparams.add_hparam("d_model", 512) hparams.add...	[ "def", "mtf_transformer_base", "(", ")", ":", "hparams", "=", "common_hparams", ".", "basic_params1", "(", ")", "hparams", ".", "no_data_parallelism", "=", "True", "hparams", ".", "use_fixed_batch_size", "=", "True", "hparams", ".", "add_hparam", "(", "\"mtf_mode\...	41.731183	18.107527
def copy(self): """Correctly copies the `Record` # Returns `Record` > A completely decoupled copy of the original """ c = copy.copy(self) c._fieldDict = c._fieldDict.copy() return c	[ "def", "copy", "(", "self", ")", ":", "c", "=", "copy", ".", "copy", "(", "self", ")", "c", ".", "_fieldDict", "=", "c", ".", "_fieldDict", ".", "copy", "(", ")", "return", "c" ]	19.75	20.333333
def _is_collect_cx_state_runnable(self, proc_location): """ Determine if collect_connection_state is set and can effectively run. If self._collect_cx_state is True and a custom proc_location is provided, the system cannot run `ss` or `netstat` over a custom proc_location :param ...	[ "def", "_is_collect_cx_state_runnable", "(", "self", ",", "proc_location", ")", ":", "if", "self", ".", "_collect_cx_state", "is", "False", ":", "return", "False", "if", "proc_location", "!=", "\"/proc\"", ":", "self", ".", "warning", "(", "\"Cannot collect connec...	39.125	23.125
def get_request(self, request_id, status=False): """ Retrieves a single request by ID. :param request_id: The unique ID of the request. :type request_id: ``str`` :param status: Retreive the full status of the request. :type status: ``bool`` ...	[ "def", "get_request", "(", "self", ",", "request_id", ",", "status", "=", "False", ")", ":", "if", "status", ":", "response", "=", "self", ".", "_perform_request", "(", "'/requests/'", "+", "request_id", "+", "'/status'", ")", "else", ":", "response", "=",...	29.315789	16.684211
def _serialize_to_one(self, key, val, rlink): """ Make a to_one JSON API compliant :spec: jsonapi.org/format/#document-resource-object-relationships :param key: the string name of the relationship field :param val: dict containing `rid` & `rtype` keys...	[ "def", "_serialize_to_one", "(", "self", ",", "key", ",", "val", ",", "rlink", ")", ":", "data", "=", "None", "if", "val", "and", "val", "[", "'rid'", "]", ":", "data", "=", "{", "'id'", ":", "val", "[", "'rid'", "]", ",", "'type'", ":", "val", ...	27.884615	19.384615
def get_starter_kit_meta(name): """ Extract metadata link for starter kit from platform configs. Starter kit available on add component - starter kit menu. Beware, config could be changed by deploy scripts during deploy. :param name: Name of starter kit :return: Link to metadata """ kits = y...	[ "def", "get_starter_kit_meta", "(", "name", ")", ":", "kits", "=", "yaml", ".", "safe_load", "(", "requests", ".", "get", "(", "url", "=", "starter_kits_url", ")", ".", "content", ")", "[", "'kits'", "]", "kits_meta_url", "=", "[", "x", "[", "'metaUrl'",...	48.692308	27.461538
def count(self, sub, start=0, end=-1): """Return the number of non-overlapping occurrences of substring sub in string[start:end]. Optional arguments start and end are interpreted as in slice notation. :param str sub: Substring to search. :param int start: Beginning position. :p...	[ "def", "count", "(", "self", ",", "sub", ",", "start", "=", "0", ",", "end", "=", "-", "1", ")", ":", "return", "self", ".", "value_no_colors", ".", "count", "(", "sub", ",", "start", ",", "end", ")" ]	42.9	16.4

def build_mxnet(app): """Build mxnet .so lib""" if not os.path.exists(os.path.join(app.builder.srcdir, '..', 'config.mk')): _run_cmd("cd %s/.. && cp make/config.mk config.mk && make -j$(nproc) USE_MKLDNN=0 USE_CPP_PACKAGE=1 " % app.builder.srcdir) else: _run_cmd("cd %s/.. && ...

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49.875

26.25

def get_job_statuses(github_token, api_url, build_id, polling_interval, job_number): """Wait for all the travis jobs to complete. Once the other jobs are complete, return a list of booleans, indicating whether or not the job was successful. Ignore jobs marked "allow_failure". "...

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44.034483

18.827586

def _pp(dict_data): """Pretty print.""" for key, val in dict_data.items(): # pylint: disable=superfluous-parens print('{0:<11}: {1}'.format(key, val))

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34

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def serialize(self): """Get the unicode string representing the whole collection.""" import datetime items = [] time_begin = datetime.datetime.now() for href in self.list(): items.append(self.get(href).item) time_end = datetime.datetime.now() self.logg...

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44.173913

13.782609

def delete_dbinstance(self, id, skip_final_snapshot=False, final_snapshot_id=''): """ Delete an existing DBInstance. :type id: str :param id: Unique identifier for the new instance. :type skip_final_snapshot: bool :param skip_final_snapshot: Th...

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43.310345

20.62069

def get_cluster(self, label): """Returns a connection to a mongo-clusters. Args: label (string): the label of a cluster. Returns: A connection to the cluster labeld with label. Raises: AttributeError: there is no cluster with the given label in the ...

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31.294118

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def _determine_redirect(self, url, verb, timeout=15, headers={}): """ Internal redirect function, focuses on HTTP and worries less about application-y stuff. @param url: the url to check @param verb: the verb, e.g. head, or get. @param timeout: the time, in seconds, that ...

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37.121212

18.454545

def create_thumbnail(img, width, height): """ 创建缩略图缩略图的意思就是缩小 :param img: 图片对象 :param width: 宽 :param height: 高 :return: """ size = (width, height) img.thumbnail(size) return img

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17.666667

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def set_writer_position(self, name, timestamp): """Insert a timestamp to keep track of the current writer position""" execute = self.cursor.execute execute('DELETE FROM gauged_writer_history WHERE id = %s', (name,)) execute('INSERT INTO gauged_writer_history (id, timestamp) ' ...

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59.666667

14.5

def _metadata_endpoint(self, context): """ Endpoint for retrieving the backend metadata :type context: satosa.context.Context :rtype: satosa.response.Response :param context: The current context :return: response with metadata """ satosa_logging(logger, l...

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42.5

18.5

def split(self, cutting_points, shift_times=False, overlap=0.0): """ Split the label-list into x parts and return them as new label-lists. x is defined by the number of cutting-points(``x == len(cutting_points) + 1``) The result is a list of label-lists corresponding to each part. ...

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33.472222

20.712963

def create_guest_screen_info(self, display, status, primary, change_origin, origin_x, origin_y, width, height, bits_per_pixel): """Make a IGuestScreenInfo object with the provided parameters. in display of type int The number of the guest display. in status of type :class:`GuestMon...

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44.672414

23.293103

def sample_outcomes(probs, n): """ For a discrete probability distribution ``probs`` with outcomes 0, 1, ..., k-1 draw ``n`` random samples. :param list probs: A list of probabilities. :param Number n: The number of random samples to draw. :return: An array of samples drawn from distribution pr...

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37.692308

20.153846

def deepnn(x): """deepnn builds the graph for a deep net for classifying digits. Args: x: an input tensor with the dimensions (N_examples, 784), where 784 is the number of pixels in a standard MNIST image. Returns: A tuple (y, keep_prob). y is a tensor of shape (N_examples, 10)...

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39.032787

20.737705

def prep_db_parallel(samples, parallel_fn): """Prepares gemini databases in parallel, handling jointly called populations. """ batch_groups, singles, out_retrieve, extras = _group_by_batches(samples, _has_variant_calls) to_process = [] has_batches = False for (name, caller), info in batch_groups...

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41.241379

16.034483

def set_attrs(self, **attrs): """Set model attributes, e.g. input resistance of a cell.""" self.attrs.update(attrs) self._backend.set_attrs(**attrs)

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42.25

4.75

def delete_cell(self, key): """Deletes key cell""" try: self.code_array.pop(key) except KeyError: pass self.grid.code_array.result_cache.clear()

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19.5

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def _setup(self, delete=True): """Create a function instance and execute setup. Args: delete (bool): Delete buffered variables. """ if delete: self.clear() with nn.context_scope(self.ctx): outputs = self.func( *(self.inputs_f ...

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32.111111

13.722222

def ensure_path_exists(path, *args): '''Like os.makedirs but keeps quiet if path already exists''' if os.path.exists(path): return os.makedirs(path, *args)

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28.5

19.833333

def setup(self): """Additional setup steps.""" LOGGER.info('Tinman v%s starting up with Tornado v%s', __version__, tornado_version) # Setup debugging and paths self.enable_debug() self.set_base_path(os.getcwd()) self.insert_paths() # Setup chi...

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40.1

12.85

def get_signed_query_params_v2(credentials, expiration, string_to_sign): """Gets query parameters for creating a signed URL. :type credentials: :class:`google.auth.credentials.Signing` :param credentials: The credentials used to create a private key for signing text. :type expi...

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36.758621

20.137931

def expand_state_definition(source, loc, tokens): """ Parse action to convert statemachine to corresponding Python classes and methods """ indent = " " * (pp.col(loc, source) - 1) statedef = [] # build list of states states = set() fromTo = {} for tn in tokens.transitions: s...

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31.275862

19.896552

def name(username): """Display / set / update the user name.""" if not username: click.secho(dtool_config.utils.get_username(CONFIG_PATH)) else: username_str = " ".join(username) click.secho(dtool_config.utils.set_username(CONFIG_PATH, username_str))

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40

19.571429

def get_acl(self, key_name='', headers=None, version_id=None): """returns a bucket's acl. We include a version_id argument to support a polymorphic interface for callers, however, version_id is not relevant for Google Cloud Storage buckets and is therefore ignored here.""" ...

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63.333333

18

def connect(self): """Return "dummy" connection.""" log.critical('NEVER USE THIS CODE FOR REAL-LIFE USE-CASES!!!') log.critical('ONLY FOR DEBUGGING AND TESTING!!!') # The code below uses HARD-CODED secret key - and should be used ONLY # for GnuPG integration tests (e.g. when no r...

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52

22

def save(self, data, *args, **kwargs): """ inserts data (dict or list of dicts) expected kwargs: collection_name: by default uses MONGODB_DEFAULT_COLLECTION w: by default set to 0 to disable write acknowledgement assumes that data has been verified / validated ...

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39.869565

15.521739

def _exit_now_changed(self, name, old, new): """stop eventloop when exit_now fires""" if new: loop = ioloop.IOLoop.instance() loop.add_timeout(time.time()+0.1, loop.stop)

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41.2

9.6

def sync_ik_robot(self, joint_positions, simulate=False, sync_last=True): """ Force the internal robot model to match the provided joint angles. Args: joint_positions (list): a list or flat numpy array of joint positions. simulate (bool): If True, actually use physics si...

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41.965517

17.344828

def install_all_labels(stdout=None): """ Discover all subclasses of StructuredNode in your application and execute install_labels on each. Note: code most be loaded (imported) in order for a class to be discovered. :param stdout: output stream :return: None """ if not stdout: stdou...

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30.074074

26.148148

def write_file(environ, term='bash', out_dir=None, tree_dir=None): ''' Write a tree environment file Loops over the tree environ and writes them out to a bash, tsch, or modules file Parameters: environ (dict): The tree dictionary environment term (str): The type...

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34.229167

18.520833

def Nu_cylinder_Whitaker(Re, Pr, mu=None, muw=None): r'''Calculates Nusselt number for crossflow across a single tube as shown in [1]_ at a specified `Re` and `Pr`, both evaluated at the free stream temperature. Recommends a viscosity exponent correction of 0.25, which is applied only if provided. Also ...

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36.211538

26.25

def transp(I,J,c,d,M): """transp -- model for solving the transportation problem Parameters: I - set of customers J - set of facilities c[i,j] - unit transportation cost on arc (i,j) d[i] - demand at node i M[j] - capacity Returns a model, ready to be solved. """ ...

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25.628571

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def calc_system(self, x, Y, Y_agg=None, L=None, population=None): """ Calculates the missing part of the extension plus accounts This method allows to specify an aggregated Y_agg for the account calculation (see Y_agg below). However, the full Y needs to be specified for the calculation...

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42.016575

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def get_tweet(self, id): """ Get an existing tweet. :param id: ID of the tweet in question :return: Tweet object. None if not found """ try: return Tweet(self._client.get_status(id=id)._json) except TweepError as e: if e.api_code == TWITTE...

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29.076923

14.923077

def parseFASTACommandLineOptions(args): """ Examine parsed command-line options and return a Reads instance. @param args: An argparse namespace, as returned by the argparse C{parse_args} function. @return: A C{Reads} subclass instance, depending on the type of FASTA file given. """ ...

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34.791667

18.791667

def longest_overlap(ovls): """ From a list of overlays if any overlap keep the longest. """ # Ovls know how to compare to each other. ovls = sorted(ovls) # I know this could be better but ovls wont be more than 50 or so. for i, s in enumerate(ovls): passing = True for l in...

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27.1

20.1

def _simple_dispatch(self, name, params): """ Dispatch method """ try: # Internal method func = self.funcs[name] except KeyError: # Other method pass else: # Internal method found if isinstance(params...

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28.4

14.4

def prev_img_ws(self, ws, loop=True): """Go to the previous image in the focused channel in the workspace. """ channel = self.get_active_channel_ws(ws) if channel is None: return channel.prev_image() return True

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33

9.875

def kalman_filter(kalman_state, old_indices, coordinates, q, r): '''Return the kalman filter for the features in the new frame kalman_state - state from last frame old_indices - the index per feature in the last frame or -1 for new coordinates - Coordinates of the features in the new frame. q - ...

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41.421053

22.669173

def _move_content_to(self, other_tc): """ Append the content of this cell to *other_tc*, leaving this cell with a single empty ``<w:p>`` element. """ if other_tc is self: return if self._is_empty: return other_tc._remove_trailing_empty_p() ...

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37.666667

12.066667

def get_serializer_class(self, view, method_func): """ Try to get the serializer class from view method. If view method don't have request serializer, fallback to serializer_class on view class """ if hasattr(method_func, 'request_serializer'): return getattr(method_f...

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37.533333

20.2

def iri_to_uri(value, normalize=False): """ Encodes a unicode IRI into an ASCII byte string URI :param value: A unicode string of an IRI :param normalize: A bool that controls URI normalization :return: A byte string of the ASCII-encoded URI """ if not isinstance(...

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33.061728

20.024691

def from_schema(cls, schema, *args, **kwargs): """ Construct a resolver from a JSON schema object. :argument schema schema: the referring schema :rtype: :class:`RefResolver` """ return cls(schema.get(u"id", u""), schema, *args, **kwargs)

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27.9

18.5

def get_backend_class(): """Return reference to the configured backed class.""" # this will (intentionally) blow up if the setting does not exist assert hasattr(settings, 'INBOUND_EMAIL_PARSER') assert getattr(settings, 'INBOUND_EMAIL_PARSER') is not None package, klass = settings.INBOUND_EMAIL_PAR...

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44.444444

17.555556

def load(cls, path): """ Load a SOM from a JSON file saved with this package. Parameters ---------- path : str The path to the JSON file. Returns ------- s : cls A som of the specified class. """ data = json.load(...

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25.757576

18.484848

def persist_experiment(experiment): """ Persist this experiment in the benchbuild database. Args: experiment: The experiment we want to persist. """ from benchbuild.utils.schema import Experiment, Session session = Session() cfg_exp = experiment.id LOG.debug("Using experiment ...

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25.571429

19.628571

def read_nb(filename, solution) -> nbformat.NotebookNode: """ Takes in a filename of a notebook and returns a notebook object containing only the cell outputs to export. """ with open(filename, 'r') as f: nb = nbformat.read(f, as_version=4) email = find_student_email(nb) preamble = ...

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32.894737

16.894737

def is_dataframe(data): """ Checks whether the supplied data is of DataFrame type. """ dd = None if 'dask' in sys.modules and 'pandas' in sys.modules: import dask.dataframe as dd return((pd is not None and isinstance(data, pd.DataFrame)) or (dd is not None and isinstance(data, ...

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36.333333

14.555556

def proportional_weights(self, fraction_stdev=1.0, wmax=100.0, leave_zero=True): """setup weights inversely proportional to the observation value Parameters ---------- fraction_stdev : float the fraction portion of the observation va...

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35.25

14.607143

def encode(self, response): """Encode a response to a L{WebResponse}. @raises EncodingError: When I can't figure out how to encode this message. """ encode_as = response.whichEncoding() if encode_as == ENCODE_KVFORM: wr = self.responseFactory(body=respons...

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42.565217

14.913043

def collection_callback(result=None): """ :type result: opendnp3.CommandPointResult """ print("Header: {0} | Index: {1} | State: {2} | Status: {3}".format( result.headerIndex, result.index, opendnp3.CommandPointStateToString(result.state), opendnp3.CommandStatusToString...

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33.3

13.7

def get_currentDim(self): ''' returns the current dimensions of the object ''' selfDim = self._dimensions.copy() if not isinstance(selfDim,dimStr): if selfDim.has_key('_ndims') : nself = selfDim.pop('_ndims') else : self.warning(1,...

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43.076923

19.230769

def edit_preferences(self, resource): """Edit preferences in /usr/cdrouter-data/etc/config.yml. :param resource: :class:`system.Preferences <system.Preferences>` object :return: :class:`system.Preferences <system.Preferences>` object :rtype: system.Preferences """ schema...

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41.615385

16.846154

def toggle_grid(self, evt=None, show=None): "toggle grid display" if show is None: show = not self.conf.show_grid self.conf.enable_grid(show)

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34.6

7.4

def get_HDX_code_from_location_partial(location, locations=None, configuration=None): # type: (str, Optional[List[Dict]], Optional[Configuration]) -> Tuple[Optional[str], bool] """Get HDX code for location Args: location (str): Location for which to get HDX code location...

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44.769231

28.961538

def answerUnsupported(self, message, preferred_association_type=None, preferred_session_type=None): """Respond to this request indicating that the association type or association session type is not supported.""" if self.message.isOpenID1(): raise ProtocolEr...

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40.2

17.85

def str2date(self, datestr): """Parse date from string. If no template matches this string, raise Error. Please go https://github.com/MacHu-GWU/rolex-project/issues submit your date string. I 'll update templates asap. This method is faster than :meth:`dateutil.parser.parse`. ...

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31.536585

18.585366

def pipeline(line, cell=None): """Implements the pipeline cell magic for ipython notebooks. The supported syntax is: %%pipeline <command> [<args>] <cell> or: %pipeline <command> [<args>] Use %pipeline --help for a list of commands, or %pipeline <command> --help for help on a specific command....

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24.875

25.0625

def end_of_history(self, e): # (M->) u'''Move to the end of the input history, i.e., the line currently being entered.''' self._history.end_of_history(self.l_buffer) self.finalize()

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42.8

16

def decode(var, encoding): """ If not already unicode, decode it. """ if PY2: if isinstance(var, unicode): ret = var elif isinstance(var, str): if encoding: ret = var.decode(encoding) else: ret = unicode(var) els...

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22.647059

13.705882

def lookup_matching(self, urls): """Get matching hosts for the given URLs. :param urls: an iterable containing URLs :returns: instances of AddressListItem representing listed hosts matching the ones used by the given URLs :raises InvalidURLError: if there are any invalid URLs in...

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36.785714

13.928571

def _add_asset_content(self, asset_id, asset_data=None, asset_url=None, asset_content_type=None, asset_label=None): """stub""" rm = self.my_osid_object_form._get_provide...

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39.8

18.111111

def generate_base(model, model_dict, config, manifest, source_config, provider, adapter=None): """Generate the common aspects of the config dict.""" if provider is None: raise dbt.exceptions.InternalException( "Invalid provider given to context: {}".format(provider)) t...

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32.55

16.433333

def ExtractEvents(self, parser_mediator, registry_key, **kwargs): """Extracts events from a Windows Registry key. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. registry_key (dfwinreg.WinRegistryKey): Windows ...

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38.811321

21.037736

def send(messages=None, conf=None, parse_mode=None, disable_web_page_preview=False, files=None, images=None, captions=None, locations=None, timeout=30): """Send data over Telegram. All arguments are optional. Always use this function with explicit keyword arguments. So `send(messages=["Hello!"])` ...

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42.902174

26.619565

def DEFINE_alias(name, original_name, flag_values=FLAGS, module_name=None): # pylint: disable=g-bad-name """Defines an alias flag for an existing one. Args: name: A string, name of the alias flag. original_name: A string, name of the original flag. flag_values: FlagValues object with which the flag wi...

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33.95122

21.804878

def results_to_csv(query_name, **kwargs): """ Generate CSV from result data """ query = get_result_set(query_name, **kwargs) result = query.result columns = list(result[0].keys()) data = [tuple(row.values()) for row in result] frame = tablib.Dataset() frame.headers = columns for row ...

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29.923077

10.230769

def get_argparser(): """ Get the command line argument parser. """ parser = argparse.ArgumentParser("twarc") parser.add_argument('command', choices=commands) parser.add_argument('query', nargs='?', default=None) parser.add_argument("--log", dest="log", default="twarc...

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56.016393

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def _detect_xerial_stream(payload): """Detects if the data given might have been encoded with the blocking mode of the xerial snappy library. This mode writes a magic header of the format: +--------+--------------+------------+---------+--------+ | Marker | Magic String | Nu...

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46.5

24.5

def ecg_process(ecg, rsp=None, sampling_rate=1000, filter_type="FIR", filter_band="bandpass", filter_frequency=[3, 45], segmenter="hamilton", quality_model="default", hrv_features=["time", "frequency"], age=None, sex=None, position=None): """ Automated processing of ECG and RSP signals. Parameters ----...

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84.910569

74.471545

def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types): """ See :meth:`superclass method <.base.GroundShakingIntensityModel.get_mean_and_stddevs>` for spec of input and result values. """ # get mean and std using the superclass mean, stddevs = super...

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35.6

15.733333

def set_quickchart_resource(self, resource): # type: (Union[hdx.data.resource.Resource,Dict,str,int]) -> bool """Set the resource that will be used for displaying QuickCharts in dataset preview Args: resource (Union[hdx.data.resource.Resource,Dict,str,int]): Either resource id or na...

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45.121212

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def password_attributes_character_restriction_numeric(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") password_attributes = ET.SubElement(config, "password-attributes", xmlns="urn:brocade.com:mgmt:brocade-aaa") character_restriction = ET.SubElement(passw...

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50.181818

23.181818

def grab_zipped_url(zipped_url, ensure=True, appname='utool', download_dir=None, force_commonprefix=True, cleanup=False, redownload=False, spoof=False): r""" downloads and unzips the url Args: zipped_url (str): url which must be either a .zip of a .tar.gz fil...

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38.268657

16.19403

def _last_index(x, default_dim): """Returns the last dimension's index or default_dim if x has no shape.""" if x.get_shape().ndims is not None: return len(x.get_shape()) - 1 else: return default_dim

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34.5

11.5

def get_comment_replies(self, *args, **kwargs): """Return a get_content generator for inboxed comment replies. The additional parameters are passed directly into :meth:`.get_content`. Note: the `url` parameter cannot be altered. """ return self.get_content(self.config['comment_...

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41.222222

18.888889

def assign_category(salts): """ Identifies IL type based on name/str Parameters ---------- salts: pandas DataFrame dataframe containing column with cation name Returns ---------- salts: pandas DataFrame returns the same dataframe with categories """ if "name-cat...

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33.466667

12.4

def is_coincident(self, other, keys = None): """ Return True if any segment in any list in self intersects any segment in any list in other. If the optional keys argument is not None, then it should be an iterable of keys and only segment lists for those keys will be considered in the test (instead of rais...

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37.576923

16.269231

def classes(self, values): """Classes setter.""" if isinstance(values, dict): if self.__data is not None and len(self.__data) != len(values): raise ValueError( 'number of samples do not match the previously assigned data') elif set(self.keys) !...

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46.5

20.083333

def normalizeBPointType(value): """ Normalizes bPoint type. * **value** must be an string. * **value** must be one of the following: +--------+ | corner | +--------+ | curve | +--------+ * Returned value will be an unencoded ``unicode`` string. """ allowedTy...

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28.130435

17

def _get_example_from_basic_type(type): """Get example from the given type. Args: type: the type you want an example of. Returns: An array with two example values of the given type. """ if type == 'integer': return [42, 24] elif type ...

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31.095238

14.142857

def validNormalizeAttributeValue(self, doc, name, value): """Does the validation related extra step of the normalization of attribute values: If the declared value is not CDATA, then the XML processor must further process the normalized attribute value by discarding any leading an...

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57.454545

18.363636

def DEFINE_boolean(flag_name, default_value, docstring): # pylint: disable=invalid-name """Defines a flag of type 'boolean'. Args: flag_name: The name of the flag as a string. default_value: The default value the flag should take as a boolean. docstring: A helpful message explaining the...

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35.111111

18.555556

def write_longlong(self, n): """ Write an integer as an unsigned 64-bit value. """ if (n < 0) or (n >= (2**64)): raise ValueError('Octet out of range 0..2**64-1') self._flushbits() self.out.write(pack('>Q', n))

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29.222222

11.888889

def include_end(self): """ Performs and end of include. """ self.lex = self.filestack[-1][2] self.input_data = self.filestack[-1][3] self.filestack.pop() if not self.filestack: # End of input? return self.filestack[-1][1] += 1 # Increment line coun...

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28.947368

16.684211

def register_event(self, event_type, pattern, handler): """ When ``event_type`` is observed for ``pattern``, triggers ``handler``. For "CHANGE" events, ``pattern`` should be a tuple of ``min_changed_pixels`` and the base screen state. """ if event_type not in self._supported_eve...

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48.208333

26.5

def select_atoms(indices): '''Select atoms by their indices. You can select the first 3 atoms as follows:: select_atoms([0, 1, 2]) Return the current selection dictionary. ''' rep = current_representation() rep.select({'atoms': Selection(indices, current_system().n_atoms)}) ret...

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25.461538

21.307692

def combinetargets(targets, targetpath, mol_type='nt'): """ Creates a set of all unique sequences in a list of supplied FASTA files. Properly formats headers and sequences to be compatible with local pipelines. Splits hybrid entries. Removes illegal characters. :param targets: fasta gene targets to comb...

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56.475

22.95

def batch_get_archive(self, archive_names, default_versions=None): ''' Batch version of :py:meth:`~DataAPI.get_archive` Parameters ---------- archive_names: list Iterable of archive names to retrieve default_versions: str, object, or dict Defa...

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30.691176

25.220588

def rename(self, channel_name, new_name): """ https://api.slack.com/methods/channels.rename """ channel_id = self.get_channel_id(channel_name) self.params.update({ 'channel': channel_id, 'name': new_name, }) return FromUrl('https://slack.c...

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41.888889

14.333333

def hypercube(number_of_samples, variables): """ This implements Latin Hypercube Sampling. See https://mathieu.fenniak.net/latin-hypercube-sampling/ for intuitive explanation of what it is :param number_of_samples: number of segments/samples :param variables: initial parameters and conditions (lis...

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39.865385

23.557692

def oauth_token_create(self, data, **kwargs): "https://developer.zendesk.com/rest_api/docs/core/oauth_tokens#create-token" api_path = "/api/v2/oauth/tokens.json" return self.call(api_path, method="POST", data=data, **kwargs)

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61.25

21.25

def repeat(coro, times=1, step=1, limit=1, loop=None): """ Executes the coroutine function ``x`` number of times, and accumulates results in order as you would use with ``map``. Execution concurrency is configurable using ``limit`` param. This function is a coroutine. Arguments: coro...

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29.615385

23.461538

def mtf_transformer_base(): """Set of hyperparameters.""" hparams = common_hparams.basic_params1() hparams.no_data_parallelism = True hparams.use_fixed_batch_size = True hparams.add_hparam("mtf_mode", True) hparams.batch_size = 64 hparams.max_length = 256 hparams.add_hparam("d_model", 512) hparams.add...

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41.731183

18.107527

def copy(self): """Correctly copies the `Record` # Returns `Record` > A completely decoupled copy of the original """ c = copy.copy(self) c._fieldDict = c._fieldDict.copy() return c

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19.75

20.333333

def _is_collect_cx_state_runnable(self, proc_location): """ Determine if collect_connection_state is set and can effectively run. If self._collect_cx_state is True and a custom proc_location is provided, the system cannot run `ss` or `netstat` over a custom proc_location :param ...

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39.125

23.125

def get_request(self, request_id, status=False): """ Retrieves a single request by ID. :param request_id: The unique ID of the request. :type request_id: ``str`` :param status: Retreive the full status of the request. :type status: ``bool`` ...

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29.315789

16.684211

def _serialize_to_one(self, key, val, rlink): """ Make a to_one JSON API compliant :spec: jsonapi.org/format/#document-resource-object-relationships :param key: the string name of the relationship field :param val: dict containing `rid` & `rtype` keys...

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27.884615

19.384615

def get_starter_kit_meta(name): """ Extract metadata link for starter kit from platform configs. Starter kit available on add component - starter kit menu. Beware, config could be changed by deploy scripts during deploy. :param name: Name of starter kit :return: Link to metadata """ kits = y...

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48.692308

27.461538

def count(self, sub, start=0, end=-1): """Return the number of non-overlapping occurrences of substring sub in string[start:end]. Optional arguments start and end are interpreted as in slice notation. :param str sub: Substring to search. :param int start: Beginning position. :p...

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42.9

16.4