kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def link(self, content, raw_url, title=''): """ Filters links. """ if self.check_url(raw_url): url = self.rewrite_url(raw_url) maybe_title = ' title="%s"' % escape_html(title) if title else '' url = escape_html(url) return ('<a href="%s"%s>...	[ "def", "link", "(", "self", ",", "content", ",", "raw_url", ",", "title", "=", "''", ")", ":", "if", "self", ".", "check_url", "(", "raw_url", ")", ":", "url", "=", "self", ".", "rewrite_url", "(", "raw_url", ")", "maybe_title", "=", "' title=\"%s\"'",...	39.181818	14.636364
def index(self): """ Returns the first occurrence of the bank in your :class:`.PluginsManager` """ if self.manager is None: raise IndexError('Bank not contains a manager') return self.manager.banks.index(self)	[ "def", "index", "(", "self", ")", ":", "if", "self", ".", "manager", "is", "None", ":", "raise", "IndexError", "(", "'Bank not contains a manager'", ")", "return", "self", ".", "manager", ".", "banks", ".", "index", "(", "self", ")" ]	31.875	17.125
def convert(self, layer=2, split_sign = '_', args, kwargs): """convert data to DataFrame""" return series2df(self.series, args, **kwargs)	[ "def", "convert", "(", "self", ",", "layer", "=", "2", ",", "split_sign", "=", "'_'", ",", "", "args", ",", "", "", "kwargs", ")", ":", "return", "series2df", "(", "self", ".", "series", ",", "", "args", ",", "", "", "kwargs", ")" ]	51.666667	12
def Clear(self): """Wipes the transaction log.""" try: with io.open(self.logfile, "wb") as fd: fd.write(b"") except (IOError, OSError): pass	[ "def", "Clear", "(", "self", ")", ":", "try", ":", "with", "io", ".", "open", "(", "self", ".", "logfile", ",", "\"wb\"", ")", "as", "fd", ":", "fd", ".", "write", "(", "b\"\"", ")", "except", "(", "IOError", ",", "OSError", ")", ":", "pass" ]	23.714286	17.142857
def new_evaluation_result(self, has_improved: bool) -> bool: """ Returns true if the parameters should be reset to the ones with the best validation score. :param has_improved: Whether the model improved on held-out validation data. :return: True if parameters should be reset to the one...	[ "def", "new_evaluation_result", "(", "self", ",", "has_improved", ":", "bool", ")", "->", "bool", ":", "if", "self", ".", "lr", "is", "None", ":", "assert", "self", ".", "base_lr", "is", "not", "None", "self", ".", "lr", "=", "self", ".", "base_lr", ...	47.363636	23.454545
def list_discussion_topics_courses(self, course_id, exclude_context_module_locked_topics=None, include=None, only_announcements=None, order_by=None, scope=None, search_term=None): """ List discussion topics. Returns the paginated list of discussion topics for this course or group. ...	[ "def", "list_discussion_topics_courses", "(", "self", ",", "course_id", ",", "exclude_context_module_locked_topics", "=", "None", ",", "include", "=", "None", ",", "only_announcements", "=", "None", ",", "order_by", "=", "None", ",", "scope", "=", "None", ",", "...	47.166667	22.148148
def encrypt_password(self, email, password): """ Get the RSA key for the user and encrypt the users password :param email: steam account :param password: password for account :return: encrypted password """ res = self.session.http.get(self._get_rsa_key_url, params...	[ "def", "encrypt_password", "(", "self", ",", "email", ",", "password", ")", ":", "res", "=", "self", ".", "session", ".", "http", ".", "get", "(", "self", ".", "_get_rsa_key_url", ",", "params", "=", "dict", "(", "username", "=", "email", ",", "donotca...	49.846154	22.615385
def set_keepalive(self, interval): """ Set a keepalive to occur every ``interval`` on this connection. """ pinger = functools.partial(self.ping, 'keep-alive') self.reactor.scheduler.execute_every(period=interval, func=pinger)	[ "def", "set_keepalive", "(", "self", ",", "interval", ")", ":", "pinger", "=", "functools", ".", "partial", "(", "self", ".", "ping", ",", "'keep-alive'", ")", "self", ".", "reactor", ".", "scheduler", ".", "execute_every", "(", "period", "=", "interval", ...	43.333333	15
def plot_connectivity_significance(s, fs=2, freq_range=(-np.inf, np.inf), diagonal=0, border=False, fig=None): """Plot significance. Significance is drawn as a background image where dark vertical stripes indicate freuquencies where a evaluates to True. Parameters ---------- a : array, shape (...	[ "def", "plot_connectivity_significance", "(", "s", ",", "fs", "=", "2", ",", "freq_range", "=", "(", "-", "np", ".", "inf", ",", "np", ".", "inf", ")", ",", "diagonal", "=", "0", ",", "border", "=", "False", ",", "fig", "=", "None", ")", ":", "a"...	32.986842	24.934211
def setup(cls, ikpdb_log_arg): """ activates DEBUG logging level based on the `ikpdb_log_arg` parameter string. `ikpdb_log_arg` corresponds to the `--ikpdb-log` command line argument. `ikpdb_log_arg` is composed of a serie of letters that set the `DEBUG` lo...	[ "def", "setup", "(", "cls", ",", "ikpdb_log_arg", ")", ":", "if", "not", "ikpdb_log_arg", ":", "return", "IKPdbLogger", ".", "enabled", "=", "True", "logging_configuration_string", "=", "ikpdb_log_arg", ".", "lower", "(", ")", "for", "letter", "in", "logging_c...	35.731707	18.707317
def get_template(template_dict, parameter_overrides=None): """ Given a SAM template dictionary, return a cleaned copy of the template where SAM plugins have been run and parameter values have been substituted. Parameters ---------- template_dict : dict unproc...	[ "def", "get_template", "(", "template_dict", ",", "parameter_overrides", "=", "None", ")", ":", "template_dict", "=", "template_dict", "or", "{", "}", "if", "template_dict", ":", "template_dict", "=", "SamTranslatorWrapper", "(", "template_dict", ")", ".", "run_pl...	32.807692	23.807692
def when_called_with(self, some_args, *some_kwargs): """Asserts the val callable when invoked with the given args and kwargs raises the expected exception.""" if not self.expected: raise TypeError('expected exception not set, raises() must be called first') try: self.va...	[ "def", "when_called_with", "(", "self", ",", "", "some_args", ",", "", "*", "some_kwargs", ")", ":", "if", "not", "self", ".", "expected", ":", "raise", "TypeError", "(", "'expected exception not set, raises() must be called first'", ")", "try", ":", "self", "...	50.608696	18.478261
def get_night_light_state(self): """Return the state of the night light (on/off).""" if not self.camera_extended_properties: return None night_light = self.camera_extended_properties.get('nightLight') if not night_light: return None if night_light.get('e...	[ "def", "get_night_light_state", "(", "self", ")", ":", "if", "not", "self", ".", "camera_extended_properties", ":", "return", "None", "night_light", "=", "self", ".", "camera_extended_properties", ".", "get", "(", "'nightLight'", ")", "if", "not", "night_light", ...	27.923077	19.384615
def GetNetworks(alias=None,location=None): """Gets the list of Networks mapped to the account in the specified datacenter. https://t3n.zendesk.com/entries/21024721-Get-Networks :param alias: short code for a particular account. If none will use account's default alias :param location: datacenter where group ...	[ "def", "GetNetworks", "(", "alias", "=", "None", ",", "location", "=", "None", ")", ":", "if", "alias", "is", "None", ":", "alias", "=", "clc", ".", "v1", ".", "Account", ".", "GetAlias", "(", ")", "if", "location", "is", "None", ":", "location", "...	54.333333	27.166667
def getNumberOfQCSamples(self): """ Returns the number of Quality Control samples. :returns: number of QC samples :rtype: integer """ qc_analyses = self.getQCAnalyses() qc_samples = [a.getSample().UID() for a in qc_analyses] # discarding any duplicate valu...	[ "def", "getNumberOfQCSamples", "(", "self", ")", ":", "qc_analyses", "=", "self", ".", "getQCAnalyses", "(", ")", "qc_samples", "=", "[", "a", ".", "getSample", "(", ")", ".", "UID", "(", ")", "for", "a", "in", "qc_analyses", "]", "# discarding any duplica...	34.9	7.3
def handle_completion_info_list(self, call_id, payload): """Handler for a completion response.""" self.log.debug('handle_completion_info_list: in') # filter out completions without `typeInfo` field to avoid server bug. See #324 completions = [c for c in payload["completions"] if "typeInf...	[ "def", "handle_completion_info_list", "(", "self", ",", "call_id", ",", "payload", ")", ":", "self", ".", "log", ".", "debug", "(", "'handle_completion_info_list: in'", ")", "# filter out completions without `typeInfo` field to avoid server bug. See #324", "completions", "=",...	68.714286	27.571429
def load_and_parse(self, package_name, root_dir, relative_dirs, resource_type, tags=None): """Load and parse models in a list of directories. Returns a dict that maps unique ids onto ParsedNodes""" extension = "[!.#~]*.sql" if tags is None: tags = ...	[ "def", "load_and_parse", "(", "self", ",", "package_name", ",", "root_dir", ",", "relative_dirs", ",", "resource_type", ",", "tags", "=", "None", ")", ":", "extension", "=", "\"[!.#~]*.sql\"", "if", "tags", "is", "None", ":", "tags", "=", "[", "]", "if", ...	32.155556	19.8
def magic_mprun(self, parameter_s=''): """ Execute a statement under the line-by-line memory profiler from the memory_profiler module. Usage: %mprun -f func1 -f func2 <statement> The given statement (which doesn't require quote marks) is run via the LineProfiler. Profiling is enabled for the...	[ "def", "magic_mprun", "(", "self", ",", "parameter_s", "=", "''", ")", ":", "try", ":", "from", "StringIO", "import", "StringIO", "except", "ImportError", ":", "# Python 3.x", "from", "io", "import", "StringIO", "# Local imports to avoid hard dependency.", "from", ...	33.95082	21.344262
def _windows_cpudata(): ''' Return some CPU information on Windows minions ''' # Provides: # num_cpus # cpu_model grains = {} if 'NUMBER_OF_PROCESSORS' in os.environ: # Cast to int so that the logic isn't broken when used as a # conditional in templating. Also follows...	[ "def", "_windows_cpudata", "(", ")", ":", "# Provides:", "# num_cpus", "# cpu_model", "grains", "=", "{", "}", "if", "'NUMBER_OF_PROCESSORS'", "in", "os", ".", "environ", ":", "# Cast to int so that the logic isn't broken when used as a", "# conditional in templating. Als...	34.6	20.3
async def pin(self, disable_notification: bool = False): """ Pin message :param disable_notification: :return: """ return await self.chat.pin_message(self.message_id, disable_notification)	[ "async", "def", "pin", "(", "self", ",", "disable_notification", ":", "bool", "=", "False", ")", ":", "return", "await", "self", ".", "chat", ".", "pin_message", "(", "self", ".", "message_id", ",", "disable_notification", ")" ]	28.75	18.25
def evalParam(p): """ Get value of parameter """ while isinstance(p, Param): p = p.get() if isinstance(p, RtlSignalBase): return p.staticEval() # use rather param inheritance instead of param as param value return toHVal(p)	[ "def", "evalParam", "(", "p", ")", ":", "while", "isinstance", "(", "p", ",", "Param", ")", ":", "p", "=", "p", ".", "get", "(", ")", "if", "isinstance", "(", "p", ",", "RtlSignalBase", ")", ":", "return", "p", ".", "staticEval", "(", ")", "# use...	23.818182	15.636364
def phasicTonic(self,m1=None,m2=None,chunkMs=50,quietPercentile=10, histResolution=.5,plotToo=False): """ let's keep the chunkMs as high as we reasonably can. 50ms is good. Things get flakey at lower numbers like 10ms. IMPORTANT! for this to work, prevent 0s...	[ "def", "phasicTonic", "(", "self", ",", "m1", "=", "None", ",", "m2", "=", "None", ",", "chunkMs", "=", "50", ",", "quietPercentile", "=", "10", ",", "histResolution", "=", ".5", ",", "plotToo", "=", "False", ")", ":", "# prepare sectioning values to be us...	41.234568	16.111111
def accumulate_dict_from_superclasses(cls, propname): ''' Traverse the class hierarchy and accumulate the special dicts ``MetaHasProps`` stores on classes: Args: name (str) : name of the special attribute to collect. Typically meaningful values are: ``__dataspecs__``, ``__o...	[ "def", "accumulate_dict_from_superclasses", "(", "cls", ",", "propname", ")", ":", "cachename", "=", "\"__cached_all\"", "+", "propname", "# we MUST use cls.__dict__ NOT hasattr(). hasattr() would also look at base", "# classes, and the cache must be separate for each class", "if", "...	37.25	17.25
def replace(self, key, value, time, compress_level=-1): """ Replace a key/value to server ony if it does exist. :param key: Key's name :type key: six.string_types :param value: A value to be stored on server. :type value: object :param time: Time in seconds that ...	[ "def", "replace", "(", "self", ",", "key", ",", "value", ",", "time", ",", "compress_level", "=", "-", "1", ")", ":", "return", "self", ".", "_set_add_replace", "(", "'replace'", ",", "key", ",", "value", ",", "time", ",", "compress_level", "=", "compr...	41.388889	17.055556
def filename(file_name, start_on=None, ignore=(), use_short=True, queries): '''Returns a blox template from a valid file path''' with open(file_name) as template_file: return file(template_file, start_on=start_on, ignore=ignore, use_short=use_short, queries)	[ "def", "filename", "(", "file_name", ",", "start_on", "=", "None", ",", "ignore", "=", "(", ")", ",", "use_short", "=", "True", ",", "", "", "queries", ")", ":", "with", "open", "(", "file_name", ")", "as", "template_file", ":", "return", "file", "...	68.75	28.75
def get_packages_of_type(self, package_types, mask=None): """Get packages that match a certain type. Each ordering package has a type, so return all packages that match the types we are looking for :param list package_types: List of strings representing the package ...	[ "def", "get_packages_of_type", "(", "self", ",", "package_types", ",", "mask", "=", "None", ")", ":", "_filter", "=", "{", "'type'", ":", "{", "'keyName'", ":", "{", "'operation'", ":", "'in'", ",", "'options'", ":", "[", "{", "'name'", ":", "'data'", ...	34.461538	21.346154
def spec_compliant_encrypt(claims, jwk, add_header=None, alg='RSA-OAEP', enc='A128CBC-HS256', rng=get_random_bytes): """ Encrypts the given claims and produces a :class:`~jose.JWE` :param claims: A `dict` representing the claims for this :class:`~jose.JWE`. :pa...	[ "def", "spec_compliant_encrypt", "(", "claims", ",", "jwk", ",", "add_header", "=", "None", ",", "alg", "=", "'RSA-OAEP'", ",", "enc", "=", "'A128CBC-HS256'", ",", "rng", "=", "get_random_bytes", ")", ":", "# We need 5 components for JWE token", "# 1. Generate heade...	36.901639	20.770492
def load_engines(manager, class_name, base_module, engines, class_key='ENGINE', engine_type='engine'): """Load engines.""" loaded_engines = {} for module_name_or_dict in engines: if not isinstance(module_name_or_dict, dict): module_name_or_dict = { class_key: module_name...	[ "def", "load_engines", "(", "manager", ",", "class_name", ",", "base_module", ",", "engines", ",", "class_key", "=", "'ENGINE'", ",", "engine_type", "=", "'engine'", ")", ":", "loaded_engines", "=", "{", "}", "for", "module_name_or_dict", "in", "engines", ":",...	45.689655	27.534483
def from_const(cls, value, size, dtype=type(None)): """ Constructs an SArray of size with a const value. Parameters ---------- value : [int \| float \| str \| array.array \| list \| dict \| datetime] The value to fill the SArray size : int The size of the S...	[ "def", "from_const", "(", "cls", ",", "value", ",", "size", ",", "dtype", "=", "type", "(", "None", ")", ")", ":", "assert", "isinstance", "(", "size", ",", "(", "int", ",", "long", ")", ")", "and", "size", ">=", "0", ",", "\"size must be a positive ...	38.774194	23.741935
def visit(self, obj): """Visit a node or a list of nodes. Other values are ignored""" if isinstance(obj, list): return [self.visit(elt) for elt in obj] elif isinstance(obj, ast.AST): return self._visit_one(obj)	[ "def", "visit", "(", "self", ",", "obj", ")", ":", "if", "isinstance", "(", "obj", ",", "list", ")", ":", "return", "[", "self", ".", "visit", "(", "elt", ")", "for", "elt", "in", "obj", "]", "elif", "isinstance", "(", "obj", ",", "ast", ".", "...	42.166667	6.666667
def _dumps(self, obj): """ If :prop:serialized is True, @obj will be serialized using :prop:serializer """ if not self.serialized: return obj return self.serializer.dumps(obj)	[ "def", "_dumps", "(", "self", ",", "obj", ")", ":", "if", "not", "self", ".", "serialized", ":", "return", "obj", "return", "self", ".", "serializer", ".", "dumps", "(", "obj", ")" ]	32.142857	7.428571
def accept_milestone_request(session, milestone_request_id): """ Accept a milestone request """ params_data = { 'action': 'accept', } # POST /api/projects/0.1/milestone_requests/{milestone_request_id}/?action= # accept endpoint = 'milestone_requests/{}'.format(milestone_request_i...	[ "def", "accept_milestone_request", "(", "session", ",", "milestone_request_id", ")", ":", "params_data", "=", "{", "'action'", ":", "'accept'", ",", "}", "# POST /api/projects/0.1/milestone_requests/{milestone_request_id}/?action=", "# accept", "endpoint", "=", "'milestone_re...	35.947368	16.052632
def hacking_docstring_multiline_end(physical_line, previous_logical, tokens): r"""Check multi line docstring end. OpenStack HACKING guide recommendation for docstring: Docstring should end on a new line Okay: '''foobar\nfoo\nbar\n''' Okay: def foo():\n '''foobar\n\nfoo\nbar\n''' Okay: class...	[ "def", "hacking_docstring_multiline_end", "(", "physical_line", ",", "previous_logical", ",", "tokens", ")", ":", "docstring", "=", "is_docstring", "(", "tokens", ",", "previous_logical", ")", "if", "docstring", ":", "if", "'\\n'", "not", "in", "docstring", ":", ...	43.25	18.25
def _process_interval(self, mod, interval): ''' Process beacons with intervals Return True if a beacon should be run on this loop ''' log.trace('Processing interval %s for beacon mod %s', interval, mod) loop_interval = self.opts['loop_interval'] if mod in self.int...	[ "def", "_process_interval", "(", "self", ",", "mod", ",", "interval", ")", ":", "log", ".", "trace", "(", "'Processing interval %s for beacon mod %s'", ",", "interval", ",", "mod", ")", "loop_interval", "=", "self", ".", "opts", "[", "'loop_interval'", "]", "i...	39.35	14.25
def get_urls_for_profiles(edx_video_id, profiles): """ Returns a dict mapping profiles to URLs. If the profiles or video is not found, urls will be blank. Args: edx_video_id (str): id of the video profiles (list): list of profiles we want to search for Returns: (dict): A d...	[ "def", "get_urls_for_profiles", "(", "edx_video_id", ",", "profiles", ")", ":", "profiles_to_urls", "=", "{", "profile", ":", "None", "for", "profile", "in", "profiles", "}", "try", ":", "video_info", "=", "get_video_info", "(", "edx_video_id", ")", "except", ...	30.958333	20.375
def api_auth(func): """ If the user is not logged in, this decorator looks for basic HTTP auth data in the request header. """ @wraps(func) def _decorator(request, args, *kwargs): authentication = APIAuthentication(request) if authentication.authenticate(): return ...	[ "def", "api_auth", "(", "func", ")", ":", "@", "wraps", "(", "func", ")", "def", "_decorator", "(", "request", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "authentication", "=", "APIAuthentication", "(", "request", ")", "if", "authentication", ...	29.384615	14.769231
def write_project_summary(samples, qsign_info=None): """Write project summary information on the provided samples. write out dirs, genome resources, """ work_dir = samples[0][0]["dirs"]["work"] out_file = os.path.join(work_dir, "project-summary.yaml") upload_dir = (os.path.join(work_dir, sample...	[ "def", "write_project_summary", "(", "samples", ",", "qsign_info", "=", "None", ")", ":", "work_dir", "=", "samples", "[", "0", "]", "[", "0", "]", "[", "\"dirs\"", "]", "[", "\"work\"", "]", "out_file", "=", "os", ".", "path", ".", "join", "(", "wor...	54.153846	21.538462
def add_socket(self, socket): """ Add a socket to the multiplexer. :param socket: The socket. If it was added already, it won't be added a second time. """ if socket not in self._sockets: self._sockets.add(socket) socket.on_closed.connect(self...	[ "def", "add_socket", "(", "self", ",", "socket", ")", ":", "if", "socket", "not", "in", "self", ".", "_sockets", ":", "self", ".", "_sockets", ".", "add", "(", "socket", ")", "socket", ".", "on_closed", ".", "connect", "(", "self", ".", "remove_socket"...	32.6	12.6
def updateSynapses(self, synapses, delta): """Update a set of synapses in the segment. @param tp The owner TP @param synapses List of synapse indices to update @param delta How much to add to each permanence @returns True if synapse reached 0 """ reached0 = False if delta >...	[ "def", "updateSynapses", "(", "self", ",", "synapses", ",", "delta", ")", ":", "reached0", "=", "False", "if", "delta", ">", "0", ":", "for", "synapse", "in", "synapses", ":", "self", ".", "syns", "[", "synapse", "]", "[", "2", "]", "=", "newValue", ...	29.344828	20.448276
def say_tmp_filepath( text = None, preference_program = "festival" ): """ Say specified text to a temporary file and return the filepath. """ filepath = shijian.tmp_filepath() + ".wav" say( text = text, preference_program = preference_program, ...	[ "def", "say_tmp_filepath", "(", "text", "=", "None", ",", "preference_program", "=", "\"festival\"", ")", ":", "filepath", "=", "shijian", ".", "tmp_filepath", "(", ")", "+", "\".wav\"", "say", "(", "text", "=", "text", ",", "preference_program", "=", "prefe...	26.428571	14.714286
def calc_am_um_v1(self): """Calculate the flown through area and the wetted perimeter of the main channel. Note that the main channel is assumed to have identical slopes on both sides and that water flowing exactly above the main channel is contributing to \|AM\|. Both theoretical surfaces seperatin...	[ "def", "calc_am_um_v1", "(", "self", ")", ":", "con", "=", "self", ".", "parameters", ".", "control", ".", "fastaccess", "flu", "=", "self", ".", "sequences", ".", "fluxes", ".", "fastaccess", "if", "flu", ".", "h", "<=", "0.", ":", "flu", ".", "am",...	27.545455	23.420455
def max_load(network, boundaries=[], filename=None, two_cb=False): """Plot maximum loading of each line. Parameters ---------- network: PyPSA network container Holds topology of grid including results from powerflow analysis filename: str or None Save figure in this direct...	[ "def", "max_load", "(", "network", ",", "boundaries", "=", "[", "]", ",", "filename", "=", "None", ",", "two_cb", "=", "False", ")", ":", "cmap_line", "=", "plt", ".", "cm", ".", "jet", "cmap_link", "=", "plt", ".", "cm", ".", "jet", "array_line", ...	30.463768	21.608696
def get_issues(self, sortby=None): """ Retrieves the issues in the collection. :param sortby: the properties to sort the issues by :type sortby: list(str) :rtype: list(tidypy.Issue) """ self._ensure_cleaned_issues() return self._sort_issues(self._cleaned...	[ "def", "get_issues", "(", "self", ",", "sortby", "=", "None", ")", ":", "self", ".", "_ensure_cleaned_issues", "(", ")", "return", "self", ".", "_sort_issues", "(", "self", ".", "_cleaned_issues", ",", "sortby", ")" ]	29.636364	13.818182
def detect_functions_called(contract): """ Returns a list of InternallCall, SolidityCall calls made in a function Returns: (list): List of all InternallCall, SolidityCall """ result = [] # Obtain all functions reachable by this contract. for func...	[ "def", "detect_functions_called", "(", "contract", ")", ":", "result", "=", "[", "]", "# Obtain all functions reachable by this contract.", "for", "func", "in", "contract", ".", "all_functions_called", ":", "# Loop through all nodes in the function, add all calls to a list.", "...	37.117647	16.647059
def fmt_text(text, bg = None, fg = None, attr = None, plain = False): """ Apply given console formating around given text. """ if not plain: if fg is not None: text = TEXT_FORMATING['fg'][fg] + text if bg is not None: text = TEXT_FO...	[ "def", "fmt_text", "(", "text", ",", "bg", "=", "None", ",", "fg", "=", "None", ",", "attr", "=", "None", ",", "plain", "=", "False", ")", ":", "if", "not", "plain", ":", "if", "fg", "is", "not", "None", ":", "text", "=", "TEXT_FORMATING", "[", ...	40.285714	14.142857
def get_chromosomes(self, sv=False): """Return a list of all chromosomes found in database Args: sv(bool): if sv variants should be choosen Returns: res(iterable(str)): An iterable with all chromosomes in the database """ if sv: ...	[ "def", "get_chromosomes", "(", "self", ",", "sv", "=", "False", ")", ":", "if", "sv", ":", "res", "=", "self", ".", "db", ".", "structural_variant", ".", "distinct", "(", "'chrom'", ")", "else", ":", "res", "=", "self", ".", "db", ".", "variant", "...	30.466667	20.6
def removeTopology(self, topology_name, state_manager_name): """ Removes the topology from the local cache. """ topologies = [] for top in self.topologies: if (top.name == topology_name and top.state_manager_name == state_manager_name): # Remove topologyInfo if (topol...	[ "def", "removeTopology", "(", "self", ",", "topology_name", ",", "state_manager_name", ")", ":", "topologies", "=", "[", "]", "for", "top", "in", "self", ".", "topologies", ":", "if", "(", "top", ".", "name", "==", "topology_name", "and", "top", ".", "st...	33.666667	15.266667
def _handle_start_relation(self, attrs): """ Handle opening relation element :param attrs: Attributes of the element :type attrs: Dict """ self._curr = { 'attributes': dict(attrs), 'members': [], 'rel_id': None, 'tags': {} ...	[ "def", "_handle_start_relation", "(", "self", ",", "attrs", ")", ":", "self", ".", "_curr", "=", "{", "'attributes'", ":", "dict", "(", "attrs", ")", ",", "'members'", ":", "[", "]", ",", "'rel_id'", ":", "None", ",", "'tags'", ":", "{", "}", "}", ...	28.6875	11.3125
def read_namespaced_stateful_set(self, name, namespace, **kwargs): # noqa: E501 """read_namespaced_stateful_set # noqa: E501 read the specified StatefulSet # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_re...	[ "def", "read_namespaced_stateful_set", "(", "self", ",", "name", ",", "namespace", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", "retu...	56.2	29.4
def ref(host, seq, takeoff, emergency=False): """ Basic behaviour of the drone: take-off/landing, emergency stop/reset) Parameters: seq -- sequence number takeoff -- True: Takeoff / False: Land emergency -- True: Turn off the engines """ p = 0b10001010101000000000000000000 if takeof...	[ "def", "ref", "(", "host", ",", "seq", ",", "takeoff", ",", "emergency", "=", "False", ")", ":", "p", "=", "0b10001010101000000000000000000", "if", "takeoff", ":", "p", "\|=", "0b1000000000", "if", "emergency", ":", "p", "\|=", "0b100000000", "at", "(", "h...	27.133333	14.2
def _ParseLine(self, parser_mediator, structure): """Parses a logline and store appropriate attributes. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. structure (pyparsing.ParseResults): structure of tokens de...	[ "def", "_ParseLine", "(", "self", ",", "parser_mediator", ",", "structure", ")", ":", "# TODO: Verify if date and time value is locale dependent.", "month", ",", "day_of_month", ",", "year", ",", "hours", ",", "minutes", ",", "seconds", ",", "milliseconds", "=", "("...	40.416667	21.25
def managed(name, probes, defaults=None): ''' Ensure the networks device is configured as specified in the state SLS file. Probes not specified will be removed, while probes not confiured as expected will trigger config updates. :param probes: Defines the probes as expected to be configured on the ...	[ "def", "managed", "(", "name", ",", "probes", ",", "defaults", "=", "None", ")", ":", "ret", "=", "_default_ret", "(", "name", ")", "result", "=", "True", "comment", "=", "''", "rpm_probes_config", "=", "_retrieve_rpm_probes", "(", ")", "# retrieves the RPM ...	35.083744	24.128079
def get_application_instance(): """ Returns the current `QApplication <http://doc.qt.nokia.com/qapplication.html>`_ instance or create one if it doesn't exists. :return: Application instance. :rtype: QApplication """ instance = QApplication.instance() if not instance: instance ...	[ "def", "get_application_instance", "(", ")", ":", "instance", "=", "QApplication", ".", "instance", "(", ")", "if", "not", "instance", ":", "instance", "=", "QApplication", "(", "sys", ".", "argv", ")", "return", "instance" ]	27.076923	16.461538
def parse_host(host): """Parses host name and port number from a string. """ if re.match(r'^(\d+)$', host) is not None: return ("0.0.0.0", int(host)) if re.match(r'^(\w+)://', host) is None: host = "//" + host o = parse.urlparse(host) hostname = o.hostname or "0.0.0.0" port =...	[ "def", "parse_host", "(", "host", ")", ":", "if", "re", ".", "match", "(", "r'^(\\d+)$'", ",", "host", ")", "is", "not", "None", ":", "return", "(", "\"0.0.0.0\"", ",", "int", "(", "host", ")", ")", "if", "re", ".", "match", "(", "r'^(\\w+)://'", "...	31.818182	8.272727
def match(self, origin=None, rel=None, target=None, attrs=None, include_ids=False): ''' Iterator over relationship IDs that match a pattern of components origin - (optional) origin of the relationship (similar to an RDF subject). If omitted any origin will be matched. rel - (optional) t...	[ "def", "match", "(", "self", ",", "origin", "=", "None", ",", "rel", "=", "None", ",", "target", "=", "None", ",", "attrs", "=", "None", ",", "include_ids", "=", "False", ")", ":", "#Can't use items or we risk client side RuntimeError: dictionary changed size duri...	58	35.375
def add_result(self, code, message=None): """ add a result to the internal result list arguments: same arguments as for Result() """ self._results.append(Result(code, message))	[ "def", "add_result", "(", "self", ",", "code", ",", "message", "=", "None", ")", ":", "self", ".", "_results", ".", "append", "(", "Result", "(", "code", ",", "message", ")", ")" ]	27.75	10.5
def fetch(self, is_dl_forced=False): """ Override Source.fetch() Fetches resources from String We also fetch ensembl to determine if protein pairs are from the same species Args: :param is_dl_forced (bool): Force download Returns: :return ...	[ "def", "fetch", "(", "self", ",", "is_dl_forced", "=", "False", ")", ":", "file_paths", "=", "self", ".", "_get_file_paths", "(", "self", ".", "tax_ids", ",", "'protein_links'", ")", "self", ".", "get_files", "(", "is_dl_forced", ",", "file_paths", ")", "s...	31.25	17.25
def valid_totp( token, secret, digest_method=hashlib.sha1, token_length=6, interval_length=30, clock=None, window=0, ): """Check if given token is valid time-based one-time password for given secret. :param token: token which is being checked :typ...	[ "def", "valid_totp", "(", "token", ",", "secret", ",", "digest_method", "=", "hashlib", ".", "sha1", ",", "token_length", "=", "6", ",", "interval_length", "=", "30", ",", "clock", "=", "None", ",", "window", "=", "0", ",", ")", ":", "if", "_is_possibl...	32.892857	17.857143
def stop_timer(self, request_len, reply_len, server_time=None, exception=False): """ This is a low-level method is called by pywbem at the end of an operation. It completes the measurement for that operation by capturing the needed data, and updates the statistics data...	[ "def", "stop_timer", "(", "self", ",", "request_len", ",", "reply_len", ",", "server_time", "=", "None", ",", "exception", "=", "False", ")", ":", "if", "not", "self", ".", "container", ".", "enabled", ":", "return", "None", "# stop the timer", "if", "self...	35.246575	18.452055
def _dispatch_change_event(self, object, trait_name, old, new, handler): """ Prepare and dispatch a trait change event to a listener. """ # Extract the arguments needed from the handler. args = self.argument_transform(object, trait_name, old, new) # Send a description of the event to the change event ...	[ "def", "_dispatch_change_event", "(", "self", ",", "object", ",", "trait_name", ",", "old", ",", "new", ",", "handler", ")", ":", "# Extract the arguments needed from the handler.", "args", "=", "self", ".", "argument_transform", "(", "object", ",", "trait_name", ...	46.740741	23.62963
def get_times_from_cli(cli_token): """Convert a CLI token to a datetime tuple. Argument: cli_token (str): an isoformat datetime token ([ISO date]:[ISO date]) or a special value among: * thisday * thisweek * thismonth * thisyear...	[ "def", "get_times_from_cli", "(", "cli_token", ")", ":", "today", "=", "datetime", ".", "date", ".", "today", "(", ")", "if", "cli_token", "==", "\"thisday\"", ":", "return", "today", ",", "today", "elif", "cli_token", "==", "\"thisweek\"", ":", "return", ...	37.816327	23.77551
def _milliBad(self, ismRNA=False): """ calculate badness in parts per thousand i.e. number of non-identical matches """ sizeMult = self._sizeMult qAlnSize, tAlnSize = self.qspan * sizeMult, self.tspan alnSize = min(qAlnSize, tAlnSize) if alnSize <= 0: ...	[ "def", "_milliBad", "(", "self", ",", "ismRNA", "=", "False", ")", ":", "sizeMult", "=", "self", ".", "_sizeMult", "qAlnSize", ",", "tAlnSize", "=", "self", ".", "qspan", "*", "sizeMult", ",", "self", ".", "tspan", "alnSize", "=", "min", "(", "qAlnSize...	31.958333	18.291667
def remove_callback(self, callback): """Remove callback previously registered.""" if callback in self._async_callbacks: self._async_callbacks.remove(callback)	[ "def", "remove_callback", "(", "self", ",", "callback", ")", ":", "if", "callback", "in", "self", ".", "_async_callbacks", ":", "self", ".", "_async_callbacks", ".", "remove", "(", "callback", ")" ]	45.75	4.75
def header(self, name, value): """ Store all message headers, optionally clean them up. This simply stores all message headers so we can send them to DSPAM. Additionally, headers that have the same prefix as the ones we're about to add are deleted. """ self.mess...	[ "def", "header", "(", "self", ",", "name", ",", "value", ")", ":", "self", ".", "message", "+=", "\"{}: {}\\r\\n\"", ".", "format", "(", "name", ",", "value", ")", "logger", ".", "debug", "(", "'<{}> Received {} header'", ".", "format", "(", "self", ".",...	40.75	18.875
def run_containers(command, parser, cl_args, unknown_args): """ run containers subcommand """ cluster, role, env = cl_args['cluster'], cl_args['role'], cl_args['environ'] topology = cl_args['topology-name'] container_id = cl_args['id'] try: result = tracker_access.get_topology_info(cluster, env, topology,...	[ "def", "run_containers", "(", "command", ",", "parser", ",", "cl_args", ",", "unknown_args", ")", ":", "cluster", ",", "role", ",", "env", "=", "cl_args", "[", "'cluster'", "]", ",", "cl_args", "[", "'role'", "]", ",", "cl_args", "[", "'environ'", "]", ...	39.219512	18.609756
def find_ds_mapping(data_source, es_major_version): """ Find the mapping given a perceval data source :param data_source: name of the perceval data source :param es_major_version: string with the major version for Elasticsearch :return: a dict with the mappings (raw and enriched) """ mappin...	[ "def", "find_ds_mapping", "(", "data_source", ",", "es_major_version", ")", ":", "mappings", "=", "{", "\"raw\"", ":", "None", ",", "\"enriched\"", ":", "None", "}", "# Backend connectors", "connectors", "=", "get_connectors", "(", ")", "try", ":", "raw_klass", ...	33.088235	22.441176
def Ry(rads: Union[float, sympy.Basic]) -> YPowGate: """Returns a gate with the matrix e^{-i Y rads / 2}.""" pi = sympy.pi if protocols.is_parameterized(rads) else np.pi return YPowGate(exponent=rads / pi, global_shift=-0.5)	[ "def", "Ry", "(", "rads", ":", "Union", "[", "float", ",", "sympy", ".", "Basic", "]", ")", "->", "YPowGate", ":", "pi", "=", "sympy", ".", "pi", "if", "protocols", ".", "is_parameterized", "(", "rads", ")", "else", "np", ".", "pi", "return", "YPow...	58.25	13.5
def oracle_eval(command): """ Retrieve password from the given command """ p = subprocess.Popen( command, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE) p.wait() if p.returncode == 0: return p.stdout.readline().strip().decode('utf-8') else: die( "Erro...	[ "def", "oracle_eval", "(", "command", ")", ":", "p", "=", "subprocess", ".", "Popen", "(", "command", ",", "shell", "=", "True", ",", "stdout", "=", "subprocess", ".", "PIPE", ",", "stderr", "=", "subprocess", ".", "PIPE", ")", "p", ".", "wait", "(",...	39.727273	22.636364
def _proxy(self): """ Generate an instance context for the instance, the context is capable of performing various actions. All instance actions are proxied to the context :returns: WorkspaceCumulativeStatisticsContext for this WorkspaceCumulativeStatisticsInstance :rtype: twili...	[ "def", "_proxy", "(", "self", ")", ":", "if", "self", ".", "_context", "is", "None", ":", "self", ".", "_context", "=", "WorkspaceCumulativeStatisticsContext", "(", "self", ".", "_version", ",", "workspace_sid", "=", "self", ".", "_solution", "[", "'workspac...	46.785714	27.928571
def call(method, args, *kwargs): ''' Invoke an arbitrary pyeapi method. method The name of the pyeapi method to invoke. args A list of arguments to send to the method invoked. kwargs Key-value dictionary to send to the method invoked. transport: ``https`` Sp...	[ "def", "call", "(", "method", ",", "", "args", ",", "", "", "kwargs", ")", ":", "kwargs", "=", "clean_kwargs", "(", "", "*", "kwargs", ")", "if", "'pyeapi.call'", "in", "__proxy__", ":", "return", "__proxy__", "[", "'pyeapi.call'", "]", "(", "metho...	30.723684	29.592105
def predict(self, sequences): """ Return netChop predictions for each position in each sequence. Parameters ----------- sequences : list of string Amino acid sequences to predict cleavage for Returns ----------- list of list of float ...	[ "def", "predict", "(", "self", ",", "sequences", ")", ":", "with", "tempfile", ".", "NamedTemporaryFile", "(", "suffix", "=", "\".fsa\"", ",", "mode", "=", "\"w\"", ")", "as", "input_fd", ":", "for", "(", "i", ",", "sequence", ")", "in", "enumerate", "...	36.705882	19.294118
def get_reports(self, report_ids): ''' Get reports by list of ids :param report_ids: list of reports ids :return dictionary of id/report (json string) ''' res = {} for rid in report_ids: print('Fetching report %d' % rid) resp = requests.get...	[ "def", "get_reports", "(", "self", ",", "report_ids", ")", ":", "res", "=", "{", "}", "for", "rid", "in", "report_ids", ":", "print", "(", "'Fetching report %d'", "%", "rid", ")", "resp", "=", "requests", ".", "get", "(", "'%s/api/report?report_id=%d'", "%...	35.266667	15.8
def hash_bytes(value, hasher=hashlib.sha256): # type: (bytes, Callable) -> str """ Generate a hash for a bytes value. The hash will be generated by generating a hash with HMAC using the session secret as the key and the given hash function. :param value: Bytes value to hash :param hasher: ...	[ "def", "hash_bytes", "(", "value", ",", "hasher", "=", "hashlib", ".", "sha256", ")", ":", "# type: (bytes, Callable) -> str", "return", "hmac", ".", "new", "(", "get_secret", "(", ")", ",", "value", ",", "hasher", ")", ".", "hexdigest", "(", ")" ]	35.384615	14.153846
def bucket_keys_to_guarantee_result_set_size(self, bucket_key, N, tree_depth): """ Returns list of bucket keys based on the specified bucket key and minimum result size N. """ if tree_depth == len(bucket_key): #print 'Returning leaf bucket key %s with %d vectors' % (...	[ "def", "bucket_keys_to_guarantee_result_set_size", "(", "self", ",", "bucket_key", ",", "N", ",", "tree_depth", ")", ":", "if", "tree_depth", "==", "len", "(", "bucket_key", ")", ":", "#print 'Returning leaf bucket key %s with %d vectors' % (self.bucket_key, self.vector_count...	45.59375	24.96875
def ones(n, d=None): """ Creates a TT-vector of all ones""" c = _vector.vector() if d is None: c.n = _np.array(n, dtype=_np.int32) c.d = c.n.size else: c.n = _np.array([n] * d, dtype=_np.int32) c.d = d c.r = _np.ones((c.d + 1,), dtype=_np.int32) c.get_ps() c.c...	[ "def", "ones", "(", "n", ",", "d", "=", "None", ")", ":", "c", "=", "_vector", ".", "vector", "(", ")", "if", "d", "is", "None", ":", "c", ".", "n", "=", "_np", ".", "array", "(", "n", ",", "dtype", "=", "_np", ".", "int32", ")", "c", "."...	26.923077	16.153846
def doBenchmark(plats): ''' Perform the benchmark... ''' logger = logging.getLogger("osrframework.utils") # defining the results dict res = {} # args args = [] #for p in plats: # args.append( (str(p),) ) # selecting the number of tries to be performed tries = [1, 4, 8 ,16, 24, 32, 40, 48, 56, 64] ...	[ "def", "doBenchmark", "(", "plats", ")", ":", "logger", "=", "logging", ".", "getLogger", "(", "\"osrframework.utils\"", ")", "# defining the results dict", "res", "=", "{", "}", "# args", "args", "=", "[", "]", "#for p in plats:", "#\targs.append( (str(p),) )", "...	23.416667	25.916667
def aq_esc_telemetry_encode(self, time_boot_ms, seq, num_motors, num_in_seq, escid, status_age, data_version, data0, data1): ''' Sends ESC32 telemetry data for up to 4 motors. Multiple messages may be sent in sequence when system has > 4 motors. Data is de...	[ "def", "aq_esc_telemetry_encode", "(", "self", ",", "time_boot_ms", ",", "seq", ",", "num_motors", ",", "num_in_seq", ",", "escid", ",", "status_age", ",", "data_version", ",", "data0", ",", "data1", ")", ":", "return", "MAVLink_aq_esc_telemetry_message", "(", "...	73.413793	41.827586
def del_Unnamed(df): """ Deletes all the unnamed columns :param df: pandas dataframe """ cols_del=[c for c in df.columns if 'Unnamed' in c] return df.drop(cols_del,axis=1)	[ "def", "del_Unnamed", "(", "df", ")", ":", "cols_del", "=", "[", "c", "for", "c", "in", "df", ".", "columns", "if", "'Unnamed'", "in", "c", "]", "return", "df", ".", "drop", "(", "cols_del", ",", "axis", "=", "1", ")" ]	23.625	11.625
def run(self, n_iterations=1, min_n_workers=1, iteration_kwargs = {},): """ run n_iterations of SuccessiveHalving Parameters ---------- n_iterations: int number of iterations to be performed in this run min_n_workers: int minimum number of workers before starting the run """ self.wait_for_worke...	[ "def", "run", "(", "self", ",", "n_iterations", "=", "1", ",", "min_n_workers", "=", "1", ",", "iteration_kwargs", "=", "{", "}", ",", ")", ":", "self", ".", "wait_for_workers", "(", "min_n_workers", ")", "iteration_kwargs", ".", "update", "(", "{", "'re...	27.517241	23.206897
def reset(cls): """Reset the registry to the standard codecs.""" cls._codecs = {} c = cls._codec for (name, encode, decode) in cls._common_codec_data: cls._codecs[name] = c(encode, decode)	[ "def", "reset", "(", "cls", ")", ":", "cls", ".", "_codecs", "=", "{", "}", "c", "=", "cls", ".", "_codec", "for", "(", "name", ",", "encode", ",", "decode", ")", "in", "cls", ".", "_common_codec_data", ":", "cls", ".", "_codecs", "[", "name", "]...	37.833333	14.833333
def GetOptionString(self, section, option): """Get the value of an option in the config file. Args: section: string, the section of the config file to check. option: string, the option to retrieve the value of. Returns: string, the value of the option or None if the option doesn't exist....	[ "def", "GetOptionString", "(", "self", ",", "section", ",", "option", ")", ":", "if", "self", ".", "config", ".", "has_option", "(", "section", ",", "option", ")", ":", "return", "self", ".", "config", ".", "get", "(", "section", ",", "option", ")", ...	31.214286	20.214286
def getTmpFilename(self, tmp_dir=None, prefix='tmp', suffix='.txt', include_class_id=False, result_constructor=FilePath): """ Return a temp filename tmp_dir: directory where temporary files will be stored prefix: text to append to start of file name su...	[ "def", "getTmpFilename", "(", "self", ",", "tmp_dir", "=", "None", ",", "prefix", "=", "'tmp'", ",", "suffix", "=", "'.txt'", ",", "include_class_id", "=", "False", ",", "result_constructor", "=", "FilePath", ")", ":", "# check not none", "if", "not", "tmp_d...	48.326531	22.306122
def companyDF(symbol, token='', version=''): '''Company reference data https://iexcloud.io/docs/api/#company Updates at 4am and 5am UTC every day Args: symbol (string); Ticker to request token (string); Access token version (string); API version Returns: DataFrame:...	[ "def", "companyDF", "(", "symbol", ",", "token", "=", "''", ",", "version", "=", "''", ")", ":", "c", "=", "company", "(", "symbol", ",", "token", ",", "version", ")", "df", "=", "_companyToDF", "(", "c", ")", "return", "df" ]	23.411765	17.411765
def _process_query(self, query): """Takes a key/val pair and returns the Elasticsearch code for it""" key, val = query field_name, field_action = split_field_action(key) # Boost by name__action overrides boost by name. boost = self.field_boosts.get(key) if boost is None:...	[ "def", "_process_query", "(", "self", ",", "query", ")", ":", "key", ",", "val", "=", "query", "field_name", ",", "field_action", "=", "split_field_action", "(", "key", ")", "# Boost by name__action overrides boost by name.", "boost", "=", "self", ".", "field_boos...	34.884615	20.576923
def plot_sed(sed, showlnl=False, **kwargs): """Render a plot of a spectral energy distribution. Parameters ---------- showlnl : bool Overlay a map of the delta-loglikelihood values vs. flux in each energy bin. cmap : str Color...	[ "def", "plot_sed", "(", "sed", ",", "showlnl", "=", "False", ",", "", "", "kwargs", ")", ":", "ax", "=", "kwargs", ".", "pop", "(", "'ax'", ",", "plt", ".", "gca", "(", ")", ")", "cmap", "=", "kwargs", ".", "get", "(", "'cmap'", ",", "'BuGn'"...	28.609756	19.390244
def dot(self, other): """Calculates the dot product of this vector and another vector.""" dot_product = 0 a = self.elements b = other.elements a_len = len(a) b_len = len(b) i = j = 0 while i < a_len and j < b_len: a_val = a[i] b_va...	[ "def", "dot", "(", "self", ",", "other", ")", ":", "dot_product", "=", "0", "a", "=", "self", ".", "elements", "b", "=", "other", ".", "elements", "a_len", "=", "len", "(", "a", ")", "b_len", "=", "len", "(", "b", ")", "i", "=", "j", "=", "0"...	25.363636	17.136364
def pairwise( iterable: Iterable, default_value: Any, ) -> Iterable[Tuple[Any, Any]]: """Return pairs of items from `iterable`. pairwise([1, 2, 3], default_value=None) -> (1, 2) (2, 3), (3, None) """ a, b = tee(iterable) _ = next(b, default_value) return zip_longest(a, b, fillvalue=defa...	[ "def", "pairwise", "(", "iterable", ":", "Iterable", ",", "default_value", ":", "Any", ",", ")", "->", "Iterable", "[", "Tuple", "[", "Any", ",", "Any", "]", "]", ":", "a", ",", "b", "=", "tee", "(", "iterable", ")", "_", "=", "next", "(", "b", ...	29.090909	16.363636
def get_transition(self, frame_idx, env_idx): """ Single transition with given index """ past_frame, future_frame = self.get_frame_with_future(frame_idx, env_idx) data_dict = { 'observations': past_frame, 'observations_next': future_frame, 'actions': self.act...	[ "def", "get_transition", "(", "self", ",", "frame_idx", ",", "env_idx", ")", ":", "past_frame", ",", "future_frame", "=", "self", ".", "get_frame_with_future", "(", "frame_idx", ",", "env_idx", ")", "data_dict", "=", "{", "'observations'", ":", "past_frame", "...	37.8125	21.0625
def get_fuel_prices(self) -> GetFuelPricesResponse: """Fetches fuel prices for all stations.""" response = requests.get( '{}/prices'.format(API_URL_BASE), headers=self._get_headers(), timeout=self._timeout, ) if not response.ok: raise Fuel...	[ "def", "get_fuel_prices", "(", "self", ")", "->", "GetFuelPricesResponse", ":", "response", "=", "requests", ".", "get", "(", "'{}/prices'", ".", "format", "(", "API_URL_BASE", ")", ",", "headers", "=", "self", ".", "_get_headers", "(", ")", ",", "timeout", ...	33.583333	15.666667
def _parse_template(self, has_content): """Parse a template at the head of the wikicode string.""" reset = self._head context = contexts.TEMPLATE_NAME if has_content: context \|= contexts.HAS_TEMPLATE try: template = self._parse(context) except BadR...	[ "def", "_parse_template", "(", "self", ",", "has_content", ")", ":", "reset", "=", "self", ".", "_head", "context", "=", "contexts", ".", "TEMPLATE_NAME", "if", "has_content", ":", "context", "\|=", "contexts", ".", "HAS_TEMPLATE", "try", ":", "template", "="...	34.642857	9.5
def get_open_clinvar_submission(self, user_id, institute_id): """Retrieve the database id of an open clinvar submission for a user and institute, if none is available then create a new submission and return it Args: user_id(str): a user ID institute_id(str)...	[ "def", "get_open_clinvar_submission", "(", "self", ",", "user_id", ",", "institute_id", ")", ":", "LOG", ".", "info", "(", "\"Retrieving an open clinvar submission for user '%s' and institute %s\"", ",", "user_id", ",", "institute_id", ")", "query", "=", "dict", "(", ...	44.909091	28.545455
def add_cell_footer(self): """ Add footer cell """ # check if there's already a cell footer... if true, do not add a second cell footer. # this situation happens when exporting to ipynb and then importing from ipynb. logging.info('Adding footer cell') for cell ...	[ "def", "add_cell_footer", "(", "self", ")", ":", "# check if there's already a cell footer... if true, do not add a second cell footer.", "# this situation happens when exporting to ipynb and then importing from ipynb.", "logging", ".", "info", "(", "'Adding footer cell'", ")", "for", ...	36.241379	19.758621
def vx(self,args,*kwargs): """ NAME: vx PURPOSE: return x velocity at time t INPUT: t - (optional) time at which to get the velocity vo= (Object-wide default) physical scale for velocities to use to convert use_physical= use to ove...	[ "def", "vx", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "thiso", "=", "self", "(", "", "args", ",", "", "", "kwargs", ")", "if", "not", "len", "(", "thiso", ".", "shape", ")", "==", "2", ":", "thiso", "=", "thiso", ...	36.461538	19.461538
def bakan_bahar_ensemble_align(coords, tolerance = 0.001, verbose = False ): ''' input: a list of coordinates in the format: [ [ (x, y, z), (x, y, z), (x, y, z) ], # atoms in model 1 [ (x, y, z), (x, y, z), (x, y, z) ], # atoms in model 2 # etc. ] ''' rmsd_tolerance = float("in...	[ "def", "bakan_bahar_ensemble_align", "(", "coords", ",", "tolerance", "=", "0.001", ",", "verbose", "=", "False", ")", ":", "rmsd_tolerance", "=", "float", "(", "\"inf\"", ")", "average_struct_coords", "=", "np", ".", "array", "(", "random", ".", "choice", "...	42.619048	26.619048
def _cert_callback(callback, der_cert, reason): """ Constructs an asn1crypto.x509.Certificate object and calls the export callback :param callback: The callback to call :param der_cert: A byte string of the DER-encoded certificate :param reason: None if cert is being e...	[ "def", "_cert_callback", "(", "callback", ",", "der_cert", ",", "reason", ")", ":", "if", "not", "callback", ":", "return", "callback", "(", "x509", ".", "Certificate", ".", "load", "(", "der_cert", ")", ",", "reason", ")" ]	25.052632	22.105263
def query(self, query): '''Returns objects matching criteria expressed in `query`. Follows links.''' results = super(SymlinkDatastore, self).query(query) return self._follow_link_gen(results)	[ "def", "query", "(", "self", ",", "query", ")", ":", "results", "=", "super", "(", "SymlinkDatastore", ",", "self", ")", ".", "query", "(", "query", ")", "return", "self", ".", "_follow_link_gen", "(", "results", ")" ]	50	18.5
def yyparse(self, lexfile): """ Args: lexfile (str): Flex file to be parsed Returns: DFA: A dfa automaton """ temp = tempfile.gettempdir() self.outfile = temp+'/'+''.join( random.choice( string.ascii_uppercase + string.d...	[ "def", "yyparse", "(", "self", ",", "lexfile", ")", ":", "temp", "=", "tempfile", ".", "gettempdir", "(", ")", "self", ".", "outfile", "=", "temp", "+", "'/'", "+", "''", ".", "join", "(", "random", ".", "choice", "(", "string", ".", "ascii_uppercase...	36.033333	11.3
def gen_part_from_line(lines: Iterable[str], part_index: int, splitter: str = None) -> Generator[str, None, None]: """ Splits lines with ``splitter`` and yields a specified part by index. Args: lines: iterable of strings part_index: index of par...	[ "def", "gen_part_from_line", "(", "lines", ":", "Iterable", "[", "str", "]", ",", "part_index", ":", "int", ",", "splitter", ":", "str", "=", "None", ")", "->", "Generator", "[", "str", ",", "None", ",", "None", "]", ":", "for", "line", "in", "lines"...	28.611111	16.5
def determine_offset(self): """Determines the offset of the contours w.r.t. other data columns Notes ----- - the "frame" column of `rtdc_dataset` is compared to the first contour in the contour text file to determine an offset by one event - modifies the pro...	[ "def", "determine_offset", "(", "self", ")", ":", "# In case of regular RTDC, the first contour is", "# missing. In case of fRTDC, it is there, so we", "# might have an offset. We find out if the first", "# contour frame is missing by comparing it to", "# the \"frame\" column of the rtdc dataset...	38.068966	16.862069
def extract_pool_attr(cls, req): """ Extract pool attributes from arbitary dict. """ attr = {} if 'id' in req: attr['id'] = int(req['id']) if 'name' in req: attr['name'] = req['name'] if 'description' in req: attr['description'] = req[...	[ "def", "extract_pool_attr", "(", "cls", ",", "req", ")", ":", "attr", "=", "{", "}", "if", "'id'", "in", "req", ":", "attr", "[", "'id'", "]", "=", "int", "(", "req", "[", "'id'", "]", ")", "if", "'name'", "in", "req", ":", "attr", "[", "'name'...	36.736842	16.631579

def link(self, content, raw_url, title=''): """ Filters links. """ if self.check_url(raw_url): url = self.rewrite_url(raw_url) maybe_title = ' title="%s"' % escape_html(title) if title else '' url = escape_html(url) return ('<a href="%s"%s>...

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39.181818

14.636364

def index(self): """ Returns the first occurrence of the bank in your :class:`.PluginsManager` """ if self.manager is None: raise IndexError('Bank not contains a manager') return self.manager.banks.index(self)

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31.875

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def convert(self, layer=2, split_sign = '_', *args, **kwargs): """convert data to DataFrame""" return series2df(self.series, *args, **kwargs)

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51.666667

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def Clear(self): """Wipes the transaction log.""" try: with io.open(self.logfile, "wb") as fd: fd.write(b"") except (IOError, OSError): pass

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23.714286

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def new_evaluation_result(self, has_improved: bool) -> bool: """ Returns true if the parameters should be reset to the ones with the best validation score. :param has_improved: Whether the model improved on held-out validation data. :return: True if parameters should be reset to the one...

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47.363636

23.454545

def list_discussion_topics_courses(self, course_id, exclude_context_module_locked_topics=None, include=None, only_announcements=None, order_by=None, scope=None, search_term=None): """ List discussion topics. Returns the paginated list of discussion topics for this course or group. ...

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47.166667

22.148148

def encrypt_password(self, email, password): """ Get the RSA key for the user and encrypt the users password :param email: steam account :param password: password for account :return: encrypted password """ res = self.session.http.get(self._get_rsa_key_url, params...

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49.846154

22.615385

def set_keepalive(self, interval): """ Set a keepalive to occur every ``interval`` on this connection. """ pinger = functools.partial(self.ping, 'keep-alive') self.reactor.scheduler.execute_every(period=interval, func=pinger)

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43.333333

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def plot_connectivity_significance(s, fs=2, freq_range=(-np.inf, np.inf), diagonal=0, border=False, fig=None): """Plot significance. Significance is drawn as a background image where dark vertical stripes indicate freuquencies where a evaluates to True. Parameters ---------- a : array, shape (...

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32.986842

24.934211

def setup(cls, ikpdb_log_arg): """ activates DEBUG logging level based on the `ikpdb_log_arg` parameter string. `ikpdb_log_arg` corresponds to the `--ikpdb-log` command line argument. `ikpdb_log_arg` is composed of a serie of letters that set the `DEBUG` lo...

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35.731707

18.707317

def get_template(template_dict, parameter_overrides=None): """ Given a SAM template dictionary, return a cleaned copy of the template where SAM plugins have been run and parameter values have been substituted. Parameters ---------- template_dict : dict unproc...

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32.807692

23.807692

def when_called_with(self, *some_args, **some_kwargs): """Asserts the val callable when invoked with the given args and kwargs raises the expected exception.""" if not self.expected: raise TypeError('expected exception not set, raises() must be called first') try: self.va...

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50.608696

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def get_night_light_state(self): """Return the state of the night light (on/off).""" if not self.camera_extended_properties: return None night_light = self.camera_extended_properties.get('nightLight') if not night_light: return None if night_light.get('e...

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27.923077

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def GetNetworks(alias=None,location=None): """Gets the list of Networks mapped to the account in the specified datacenter. https://t3n.zendesk.com/entries/21024721-Get-Networks :param alias: short code for a particular account. If none will use account's default alias :param location: datacenter where group ...

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54.333333

27.166667

def getNumberOfQCSamples(self): """ Returns the number of Quality Control samples. :returns: number of QC samples :rtype: integer """ qc_analyses = self.getQCAnalyses() qc_samples = [a.getSample().UID() for a in qc_analyses] # discarding any duplicate valu...

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34.9

7.3

def handle_completion_info_list(self, call_id, payload): """Handler for a completion response.""" self.log.debug('handle_completion_info_list: in') # filter out completions without `typeInfo` field to avoid server bug. See #324 completions = [c for c in payload["completions"] if "typeInf...

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68.714286

27.571429

def load_and_parse(self, package_name, root_dir, relative_dirs, resource_type, tags=None): """Load and parse models in a list of directories. Returns a dict that maps unique ids onto ParsedNodes""" extension = "[!.#~]*.sql" if tags is None: tags = ...

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32.155556

19.8

def magic_mprun(self, parameter_s=''): """ Execute a statement under the line-by-line memory profiler from the memory_profiler module. Usage: %mprun -f func1 -f func2 <statement> The given statement (which doesn't require quote marks) is run via the LineProfiler. Profiling is enabled for the...

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33.95082

21.344262

def _windows_cpudata(): ''' Return some CPU information on Windows minions ''' # Provides: # num_cpus # cpu_model grains = {} if 'NUMBER_OF_PROCESSORS' in os.environ: # Cast to int so that the logic isn't broken when used as a # conditional in templating. Also follows...

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34.6

20.3

async def pin(self, disable_notification: bool = False): """ Pin message :param disable_notification: :return: """ return await self.chat.pin_message(self.message_id, disable_notification)

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28.75

18.25

def evalParam(p): """ Get value of parameter """ while isinstance(p, Param): p = p.get() if isinstance(p, RtlSignalBase): return p.staticEval() # use rather param inheritance instead of param as param value return toHVal(p)

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23.818182

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def phasicTonic(self,m1=None,m2=None,chunkMs=50,quietPercentile=10, histResolution=.5,plotToo=False): """ let's keep the chunkMs as high as we reasonably can. 50ms is good. Things get flakey at lower numbers like 10ms. IMPORTANT! for this to work, prevent 0s...

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41.234568

16.111111

def accumulate_dict_from_superclasses(cls, propname): ''' Traverse the class hierarchy and accumulate the special dicts ``MetaHasProps`` stores on classes: Args: name (str) : name of the special attribute to collect. Typically meaningful values are: ``__dataspecs__``, ``__o...

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37.25

17.25

def replace(self, key, value, time, compress_level=-1): """ Replace a key/value to server ony if it does exist. :param key: Key's name :type key: six.string_types :param value: A value to be stored on server. :type value: object :param time: Time in seconds that ...

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41.388889

17.055556

def filename(file_name, start_on=None, ignore=(), use_short=True, **queries): '''Returns a blox template from a valid file path''' with open(file_name) as template_file: return file(template_file, start_on=start_on, ignore=ignore, use_short=use_short, **queries)

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68.75

28.75

def get_packages_of_type(self, package_types, mask=None): """Get packages that match a certain type. Each ordering package has a type, so return all packages that match the types we are looking for :param list package_types: List of strings representing the package ...

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34.461538

21.346154

def spec_compliant_encrypt(claims, jwk, add_header=None, alg='RSA-OAEP', enc='A128CBC-HS256', rng=get_random_bytes): """ Encrypts the given claims and produces a :class:`~jose.JWE` :param claims: A `dict` representing the claims for this :class:`~jose.JWE`. :pa...

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36.901639

20.770492

def load_engines(manager, class_name, base_module, engines, class_key='ENGINE', engine_type='engine'): """Load engines.""" loaded_engines = {} for module_name_or_dict in engines: if not isinstance(module_name_or_dict, dict): module_name_or_dict = { class_key: module_name...

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45.689655

27.534483

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38.774194

23.741935

def visit(self, obj): """Visit a node or a list of nodes. Other values are ignored""" if isinstance(obj, list): return [self.visit(elt) for elt in obj] elif isinstance(obj, ast.AST): return self._visit_one(obj)

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42.166667

6.666667

def _dumps(self, obj): """ If :prop:serialized is True, @obj will be serialized using :prop:serializer """ if not self.serialized: return obj return self.serializer.dumps(obj)

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32.142857

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def accept_milestone_request(session, milestone_request_id): """ Accept a milestone request """ params_data = { 'action': 'accept', } # POST /api/projects/0.1/milestone_requests/{milestone_request_id}/?action= # accept endpoint = 'milestone_requests/{}'.format(milestone_request_i...

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def hacking_docstring_multiline_end(physical_line, previous_logical, tokens): r"""Check multi line docstring end. OpenStack HACKING guide recommendation for docstring: Docstring should end on a new line Okay: '''foobar\nfoo\nbar\n''' Okay: def foo():\n '''foobar\n\nfoo\nbar\n''' Okay: class...

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43.25

18.25

def _process_interval(self, mod, interval): ''' Process beacons with intervals Return True if a beacon should be run on this loop ''' log.trace('Processing interval %s for beacon mod %s', interval, mod) loop_interval = self.opts['loop_interval'] if mod in self.int...

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39.35

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def get_urls_for_profiles(edx_video_id, profiles): """ Returns a dict mapping profiles to URLs. If the profiles or video is not found, urls will be blank. Args: edx_video_id (str): id of the video profiles (list): list of profiles we want to search for Returns: (dict): A d...

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20.375

def api_auth(func): """ If the user is not logged in, this decorator looks for basic HTTP auth data in the request header. """ @wraps(func) def _decorator(request, *args, **kwargs): authentication = APIAuthentication(request) if authentication.authenticate(): return ...

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29.384615

14.769231

def write_project_summary(samples, qsign_info=None): """Write project summary information on the provided samples. write out dirs, genome resources, """ work_dir = samples[0][0]["dirs"]["work"] out_file = os.path.join(work_dir, "project-summary.yaml") upload_dir = (os.path.join(work_dir, sample...

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54.153846

21.538462

def add_socket(self, socket): """ Add a socket to the multiplexer. :param socket: The socket. If it was added already, it won't be added a second time. """ if socket not in self._sockets: self._sockets.add(socket) socket.on_closed.connect(self...

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32.6

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def updateSynapses(self, synapses, delta): """Update a set of synapses in the segment. @param tp The owner TP @param synapses List of synapse indices to update @param delta How much to add to each permanence @returns True if synapse reached 0 """ reached0 = False if delta >...

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29.344828

20.448276

def say_tmp_filepath( text = None, preference_program = "festival" ): """ Say specified text to a temporary file and return the filepath. """ filepath = shijian.tmp_filepath() + ".wav" say( text = text, preference_program = preference_program, ...

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26.428571

14.714286

def calc_am_um_v1(self): """Calculate the flown through area and the wetted perimeter of the main channel. Note that the main channel is assumed to have identical slopes on both sides and that water flowing exactly above the main channel is contributing to |AM|. Both theoretical surfaces seperatin...

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27.545455

23.420455

def max_load(network, boundaries=[], filename=None, two_cb=False): """Plot maximum loading of each line. Parameters ---------- network: PyPSA network container Holds topology of grid including results from powerflow analysis filename: str or None Save figure in this direct...

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30.463768

21.608696

def get_issues(self, sortby=None): """ Retrieves the issues in the collection. :param sortby: the properties to sort the issues by :type sortby: list(str) :rtype: list(tidypy.Issue) """ self._ensure_cleaned_issues() return self._sort_issues(self._cleaned...

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29.636364

13.818182

def detect_functions_called(contract): """ Returns a list of InternallCall, SolidityCall calls made in a function Returns: (list): List of all InternallCall, SolidityCall """ result = [] # Obtain all functions reachable by this contract. for func...

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37.117647

16.647059

def fmt_text(text, bg = None, fg = None, attr = None, plain = False): """ Apply given console formating around given text. """ if not plain: if fg is not None: text = TEXT_FORMATING['fg'][fg] + text if bg is not None: text = TEXT_FO...

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40.285714

14.142857

def get_chromosomes(self, sv=False): """Return a list of all chromosomes found in database Args: sv(bool): if sv variants should be choosen Returns: res(iterable(str)): An iterable with all chromosomes in the database """ if sv: ...

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30.466667

20.6

def removeTopology(self, topology_name, state_manager_name): """ Removes the topology from the local cache. """ topologies = [] for top in self.topologies: if (top.name == topology_name and top.state_manager_name == state_manager_name): # Remove topologyInfo if (topol...

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33.666667

15.266667

def _handle_start_relation(self, attrs): """ Handle opening relation element :param attrs: Attributes of the element :type attrs: Dict """ self._curr = { 'attributes': dict(attrs), 'members': [], 'rel_id': None, 'tags': {} ...

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28.6875

11.3125

def read_namespaced_stateful_set(self, name, namespace, **kwargs): # noqa: E501 """read_namespaced_stateful_set # noqa: E501 read the specified StatefulSet # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_re...

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56.2

29.4

def ref(host, seq, takeoff, emergency=False): """ Basic behaviour of the drone: take-off/landing, emergency stop/reset) Parameters: seq -- sequence number takeoff -- True: Takeoff / False: Land emergency -- True: Turn off the engines """ p = 0b10001010101000000000000000000 if takeof...

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27.133333

14.2

def _ParseLine(self, parser_mediator, structure): """Parses a logline and store appropriate attributes. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. structure (pyparsing.ParseResults): structure of tokens de...

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40.416667

21.25

def managed(name, probes, defaults=None): ''' Ensure the networks device is configured as specified in the state SLS file. Probes not specified will be removed, while probes not confiured as expected will trigger config updates. :param probes: Defines the probes as expected to be configured on the ...

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35.083744

24.128079

def get_application_instance(): """ Returns the current `QApplication <http://doc.qt.nokia.com/qapplication.html>`_ instance or create one if it doesn't exists. :return: Application instance. :rtype: QApplication """ instance = QApplication.instance() if not instance: instance ...

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27.076923

16.461538

def parse_host(host): """Parses host name and port number from a string. """ if re.match(r'^(\d+)$', host) is not None: return ("0.0.0.0", int(host)) if re.match(r'^(\w+)://', host) is None: host = "//" + host o = parse.urlparse(host) hostname = o.hostname or "0.0.0.0" port =...

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31.818182

8.272727

def match(self, origin=None, rel=None, target=None, attrs=None, include_ids=False): ''' Iterator over relationship IDs that match a pattern of components origin - (optional) origin of the relationship (similar to an RDF subject). If omitted any origin will be matched. rel - (optional) t...

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58

35.375

def add_result(self, code, message=None): """ add a result to the internal result list arguments: same arguments as for Result() """ self._results.append(Result(code, message))

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27.75

10.5

def fetch(self, is_dl_forced=False): """ Override Source.fetch() Fetches resources from String We also fetch ensembl to determine if protein pairs are from the same species Args: :param is_dl_forced (bool): Force download Returns: :return ...

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31.25

17.25

def valid_totp( token, secret, digest_method=hashlib.sha1, token_length=6, interval_length=30, clock=None, window=0, ): """Check if given token is valid time-based one-time password for given secret. :param token: token which is being checked :typ...

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32.892857

17.857143

def stop_timer(self, request_len, reply_len, server_time=None, exception=False): """ This is a low-level method is called by pywbem at the end of an operation. It completes the measurement for that operation by capturing the needed data, and updates the statistics data...

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35.246575

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def _dispatch_change_event(self, object, trait_name, old, new, handler): """ Prepare and dispatch a trait change event to a listener. """ # Extract the arguments needed from the handler. args = self.argument_transform(object, trait_name, old, new) # Send a description of the event to the change event ...

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46.740741

23.62963

def get_times_from_cli(cli_token): """Convert a CLI token to a datetime tuple. Argument: cli_token (str): an isoformat datetime token ([ISO date]:[ISO date]) or a special value among: * thisday * thisweek * thismonth * thisyear...

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37.816327

23.77551

def _milliBad(self, ismRNA=False): """ calculate badness in parts per thousand i.e. number of non-identical matches """ sizeMult = self._sizeMult qAlnSize, tAlnSize = self.qspan * sizeMult, self.tspan alnSize = min(qAlnSize, tAlnSize) if alnSize <= 0: ...

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31.958333

18.291667

def remove_callback(self, callback): """Remove callback previously registered.""" if callback in self._async_callbacks: self._async_callbacks.remove(callback)

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45.75

4.75

def header(self, name, value): """ Store all message headers, optionally clean them up. This simply stores all message headers so we can send them to DSPAM. Additionally, headers that have the same prefix as the ones we're about to add are deleted. """ self.mess...

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40.75

18.875

def run_containers(command, parser, cl_args, unknown_args): """ run containers subcommand """ cluster, role, env = cl_args['cluster'], cl_args['role'], cl_args['environ'] topology = cl_args['topology-name'] container_id = cl_args['id'] try: result = tracker_access.get_topology_info(cluster, env, topology,...

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39.219512

18.609756

def find_ds_mapping(data_source, es_major_version): """ Find the mapping given a perceval data source :param data_source: name of the perceval data source :param es_major_version: string with the major version for Elasticsearch :return: a dict with the mappings (raw and enriched) """ mappin...

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33.088235

22.441176

def Ry(rads: Union[float, sympy.Basic]) -> YPowGate: """Returns a gate with the matrix e^{-i Y rads / 2}.""" pi = sympy.pi if protocols.is_parameterized(rads) else np.pi return YPowGate(exponent=rads / pi, global_shift=-0.5)

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58.25

13.5

def oracle_eval(command): """ Retrieve password from the given command """ p = subprocess.Popen( command, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE) p.wait() if p.returncode == 0: return p.stdout.readline().strip().decode('utf-8') else: die( "Erro...

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39.727273

22.636364

def _proxy(self): """ Generate an instance context for the instance, the context is capable of performing various actions. All instance actions are proxied to the context :returns: WorkspaceCumulativeStatisticsContext for this WorkspaceCumulativeStatisticsInstance :rtype: twili...

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46.785714

27.928571

def call(method, *args, **kwargs): ''' Invoke an arbitrary pyeapi method. method The name of the pyeapi method to invoke. args A list of arguments to send to the method invoked. kwargs Key-value dictionary to send to the method invoked. transport: ``https`` Sp...

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30.723684

29.592105

def predict(self, sequences): """ Return netChop predictions for each position in each sequence. Parameters ----------- sequences : list of string Amino acid sequences to predict cleavage for Returns ----------- list of list of float ...

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36.705882

19.294118

def get_reports(self, report_ids): ''' Get reports by list of ids :param report_ids: list of reports ids :return dictionary of id/report (json string) ''' res = {} for rid in report_ids: print('Fetching report %d' % rid) resp = requests.get...

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35.266667

15.8

def hash_bytes(value, hasher=hashlib.sha256): # type: (bytes, Callable) -> str """ Generate a hash for a bytes value. The hash will be generated by generating a hash with HMAC using the session secret as the key and the given hash function. :param value: Bytes value to hash :param hasher: ...

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35.384615

14.153846

def bucket_keys_to_guarantee_result_set_size(self, bucket_key, N, tree_depth): """ Returns list of bucket keys based on the specified bucket key and minimum result size N. """ if tree_depth == len(bucket_key): #print 'Returning leaf bucket key %s with %d vectors' % (...

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45.59375

24.96875

def ones(n, d=None): """ Creates a TT-vector of all ones""" c = _vector.vector() if d is None: c.n = _np.array(n, dtype=_np.int32) c.d = c.n.size else: c.n = _np.array([n] * d, dtype=_np.int32) c.d = d c.r = _np.ones((c.d + 1,), dtype=_np.int32) c.get_ps() c.c...

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def doBenchmark(plats): ''' Perform the benchmark... ''' logger = logging.getLogger("osrframework.utils") # defining the results dict res = {} # args args = [] #for p in plats: # args.append( (str(p),) ) # selecting the number of tries to be performed tries = [1, 4, 8 ,16, 24, 32, 40, 48, 56, 64] ...

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23.416667

25.916667

def aq_esc_telemetry_encode(self, time_boot_ms, seq, num_motors, num_in_seq, escid, status_age, data_version, data0, data1): ''' Sends ESC32 telemetry data for up to 4 motors. Multiple messages may be sent in sequence when system has > 4 motors. Data is de...

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def del_Unnamed(df): """ Deletes all the unnamed columns :param df: pandas dataframe """ cols_del=[c for c in df.columns if 'Unnamed' in c] return df.drop(cols_del,axis=1)

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11.625

def run(self, n_iterations=1, min_n_workers=1, iteration_kwargs = {},): """ run n_iterations of SuccessiveHalving Parameters ---------- n_iterations: int number of iterations to be performed in this run min_n_workers: int minimum number of workers before starting the run """ self.wait_for_worke...

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def reset(cls): """Reset the registry to the standard codecs.""" cls._codecs = {} c = cls._codec for (name, encode, decode) in cls._common_codec_data: cls._codecs[name] = c(encode, decode)

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def GetOptionString(self, section, option): """Get the value of an option in the config file. Args: section: string, the section of the config file to check. option: string, the option to retrieve the value of. Returns: string, the value of the option or None if the option doesn't exist....

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def getTmpFilename(self, tmp_dir=None, prefix='tmp', suffix='.txt', include_class_id=False, result_constructor=FilePath): """ Return a temp filename tmp_dir: directory where temporary files will be stored prefix: text to append to start of file name su...

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48.326531

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def companyDF(symbol, token='', version=''): '''Company reference data https://iexcloud.io/docs/api/#company Updates at 4am and 5am UTC every day Args: symbol (string); Ticker to request token (string); Access token version (string); API version Returns: DataFrame:...

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23.411765

17.411765

def _process_query(self, query): """Takes a key/val pair and returns the Elasticsearch code for it""" key, val = query field_name, field_action = split_field_action(key) # Boost by name__action overrides boost by name. boost = self.field_boosts.get(key) if boost is None:...

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def plot_sed(sed, showlnl=False, **kwargs): """Render a plot of a spectral energy distribution. Parameters ---------- showlnl : bool Overlay a map of the delta-loglikelihood values vs. flux in each energy bin. cmap : str Color...

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28.609756

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def dot(self, other): """Calculates the dot product of this vector and another vector.""" dot_product = 0 a = self.elements b = other.elements a_len = len(a) b_len = len(b) i = j = 0 while i < a_len and j < b_len: a_val = a[i] b_va...

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25.363636

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def pairwise( iterable: Iterable, default_value: Any, ) -> Iterable[Tuple[Any, Any]]: """Return pairs of items from `iterable`. pairwise([1, 2, 3], default_value=None) -> (1, 2) (2, 3), (3, None) """ a, b = tee(iterable) _ = next(b, default_value) return zip_longest(a, b, fillvalue=defa...

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29.090909

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def get_transition(self, frame_idx, env_idx): """ Single transition with given index """ past_frame, future_frame = self.get_frame_with_future(frame_idx, env_idx) data_dict = { 'observations': past_frame, 'observations_next': future_frame, 'actions': self.act...

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37.8125

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def get_fuel_prices(self) -> GetFuelPricesResponse: """Fetches fuel prices for all stations.""" response = requests.get( '{}/prices'.format(API_URL_BASE), headers=self._get_headers(), timeout=self._timeout, ) if not response.ok: raise Fuel...

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33.583333

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def _parse_template(self, has_content): """Parse a template at the head of the wikicode string.""" reset = self._head context = contexts.TEMPLATE_NAME if has_content: context |= contexts.HAS_TEMPLATE try: template = self._parse(context) except BadR...

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34.642857

9.5

def get_open_clinvar_submission(self, user_id, institute_id): """Retrieve the database id of an open clinvar submission for a user and institute, if none is available then create a new submission and return it Args: user_id(str): a user ID institute_id(str)...

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44.909091

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def add_cell_footer(self): """ Add footer cell """ # check if there's already a cell footer... if true, do not add a second cell footer. # this situation happens when exporting to ipynb and then importing from ipynb. logging.info('Adding footer cell') for cell ...

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36.241379

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def vx(self,*args,**kwargs): """ NAME: vx PURPOSE: return x velocity at time t INPUT: t - (optional) time at which to get the velocity vo= (Object-wide default) physical scale for velocities to use to convert use_physical= use to ove...

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36.461538

19.461538

def bakan_bahar_ensemble_align(coords, tolerance = 0.001, verbose = False ): ''' input: a list of coordinates in the format: [ [ (x, y, z), (x, y, z), (x, y, z) ], # atoms in model 1 [ (x, y, z), (x, y, z), (x, y, z) ], # atoms in model 2 # etc. ] ''' rmsd_tolerance = float("in...

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42.619048

26.619048

def _cert_callback(callback, der_cert, reason): """ Constructs an asn1crypto.x509.Certificate object and calls the export callback :param callback: The callback to call :param der_cert: A byte string of the DER-encoded certificate :param reason: None if cert is being e...

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25.052632

22.105263

def query(self, query): '''Returns objects matching criteria expressed in `query`. Follows links.''' results = super(SymlinkDatastore, self).query(query) return self._follow_link_gen(results)

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50

18.5

def yyparse(self, lexfile): """ Args: lexfile (str): Flex file to be parsed Returns: DFA: A dfa automaton """ temp = tempfile.gettempdir() self.outfile = temp+'/'+''.join( random.choice( string.ascii_uppercase + string.d...

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36.033333

11.3

def gen_part_from_line(lines: Iterable[str], part_index: int, splitter: str = None) -> Generator[str, None, None]: """ Splits lines with ``splitter`` and yields a specified part by index. Args: lines: iterable of strings part_index: index of par...

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28.611111

16.5

def determine_offset(self): """Determines the offset of the contours w.r.t. other data columns Notes ----- - the "frame" column of `rtdc_dataset` is compared to the first contour in the contour text file to determine an offset by one event - modifies the pro...

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38.068966

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def extract_pool_attr(cls, req): """ Extract pool attributes from arbitary dict. """ attr = {} if 'id' in req: attr['id'] = int(req['id']) if 'name' in req: attr['name'] = req['name'] if 'description' in req: attr['description'] = req[...

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36.736842

16.631579