kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def run_aconvasp_command(command, structure): """ Helper function for calling aconvasp with different arguments """ poscar = Poscar(structure) p = subprocess.Popen(command, stdout=subprocess.PIPE, stdin=subprocess.PIPE, stderr=subprocess.PIPE) ou...	[ "def", "run_aconvasp_command", "(", "command", ",", "structure", ")", ":", "poscar", "=", "Poscar", "(", "structure", ")", "p", "=", "subprocess", ".", "Popen", "(", "command", ",", "stdout", "=", "subprocess", ".", "PIPE", ",", "stdin", "=", "subprocess",...	37.6	10.8
def strip_size(self, location='top', num_lines=None): """ Breadth of the strip background in inches Parameters ---------- location : str in ``['top', 'right']`` Location of the strip text num_lines : int Number of text lines """ dp...	[ "def", "strip_size", "(", "self", ",", "location", "=", "'top'", ",", "num_lines", "=", "None", ")", ":", "dpi", "=", "72", "theme", "=", "self", ".", "theme", "get_property", "=", "theme", ".", "themeables", ".", "property", "if", "location", "==", "'...	32.111111	17.444444
def onBinaryMessage(self, msg, fromClient): data = bytearray() data.extend(msg) """ self.print_debug("message length: {}".format(len(data))) self.print_debug("message data: {}".format(hexlify(data))) """ try: self.queue.put_nowait(data) except asyncio.QueueFull: pass	[ "def", "onBinaryMessage", "(", "self", ",", "msg", ",", "fromClient", ")", ":", "data", "=", "bytearray", "(", ")", "data", ".", "extend", "(", "msg", ")", "try", ":", "self", ".", "queue", ".", "put_nowait", "(", "data", ")", "except", "asyncio", "....	21.461538	19.461538
def _delete_record(self, identifier=None, rtype=None, name=None, content=None): """ Connects to Hetzner account, removes an existing record from the zone and returns a boolean, if deletion was successful or not. Uses identifier or rtype, name & content to lookup over all records of the z...	[ "def", "_delete_record", "(", "self", ",", "identifier", "=", "None", ",", "rtype", "=", "None", ",", "name", "=", "None", ",", "content", "=", "None", ")", ":", "with", "self", ".", "_session", "(", "self", ".", "domain", ",", "self", ".", "domain_i...	56.794872	27.512821
def _check_integrity(self, lons, lats): """ Ensure lons and lats are: - 1D numpy arrays - equal size - within the appropriate range in radians """ lons = np.array(lons).ravel() lats = np.array(lats).ravel() if len(lons.shape) != 1 or len(lats....	[ "def", "_check_integrity", "(", "self", ",", "lons", ",", "lats", ")", ":", "lons", "=", "np", ".", "array", "(", "lons", ")", ".", "ravel", "(", ")", "lats", "=", "np", ".", "array", "(", "lats", ")", ".", "ravel", "(", ")", "if", "len", "(", ...	37.3	15
def to_dict(self, delimiter=DEFAULT_DELIMITER, dict_type=collections.OrderedDict): """ Get the dictionary representation of the current parser. :param str delimiter: The delimiter used for nested dictionaries, defaults to ":", optional :param class dict_type: The dictionary type to ...	[ "def", "to_dict", "(", "self", ",", "delimiter", "=", "DEFAULT_DELIMITER", ",", "dict_type", "=", "collections", ".", "OrderedDict", ")", ":", "root_key", "=", "self", ".", "sections", "(", ")", "[", "0", "]", "return", "self", ".", "_build_dict", "(", "...	45.6	22.6
def genweights(p,q,dt,error=None , n=False): """ ;+ ; GENWEIGTHS : return optimal weigthing coefficients from Powell and Leben 2004<br /> ; translated from Matlab genweigths.m program to IDL<br /><br /> ; ; Reference : Powell, B. S., et R. R. Leben (2004), An Optimal Filter for <br...	[ "def", "genweights", "(", "p", ",", "q", ",", "dt", ",", "error", "=", "None", ",", "n", "=", "False", ")", ":", "p", "=", "np", ".", "abs", "(", "p", ")", "q", "=", "np", ".", "abs", "(", "q", ")", "#check inputs\r", "if", "(", "-", "p", ...	32.130435	23.652174
def get(self, limit=None, page=None): """ get results from the db return -- Iterator() """ has_more = False self.bounds.paginate = True limit_paginate, offset = self.bounds.get(limit, page) self.default_val = [] results = self._query('get') ...	[ "def", "get", "(", "self", ",", "limit", "=", "None", ",", "page", "=", "None", ")", ":", "has_more", "=", "False", "self", ".", "bounds", ".", "paginate", "=", "True", "limit_paginate", ",", "offset", "=", "self", ".", "bounds", ".", "get", "(", "...	30.45	14.75
def find_executable(name, names=None, required=True): """Utility function to find an executable in PATH name: program to find. Use given value if absolute path names: list of additional names. For instance >>> find_executable('sed', names=['gsed']) required: If True, then the function raises a...	[ "def", "find_executable", "(", "name", ",", "names", "=", "None", ",", "required", "=", "True", ")", ":", "path_from_env", "=", "os", ".", "environ", ".", "get", "(", "name", ".", "upper", "(", ")", ")", "if", "path_from_env", "is", "not", "None", ":...	32.814815	17.259259
def trigger_streamer(inputs, *kwargs): """Trigger a streamer based on the index read from input b. Returns: list(IOTileReading) """ streamer_marker = kwargs['mark_streamer'] try: reading = inputs[1].pop() except StreamEmptyError: return [] finally: for in...	[ "def", "trigger_streamer", "(", "", "inputs", ",", "", "*", "kwargs", ")", ":", "streamer_marker", "=", "kwargs", "[", "'mark_streamer'", "]", "try", ":", "reading", "=", "inputs", "[", "1", "]", ".", "pop", "(", ")", "except", "StreamEmptyError", ":",...	20.652174	19.347826
def metric_wind_dict_to_imperial(d): """ Converts all the wind values in a dict from meters/sec (metric measurement system) to miles/hour (imperial measurement system) . :param d: the dictionary containing metric values :type d: dict :returns: a dict with the same keys as the input dict an...	[ "def", "metric_wind_dict_to_imperial", "(", "d", ")", ":", "result", "=", "dict", "(", ")", "for", "key", ",", "value", "in", "d", ".", "items", "(", ")", ":", "if", "key", "!=", "'deg'", ":", "# do not convert wind degree", "result", "[", "key", "]", ...	31.210526	20.894737
def print_file_results(file_result): """Print the results of validating a file. Args: file_result: A FileValidationResults instance. """ print_results_header(file_result.filepath, file_result.is_valid) for object_result in file_result.object_results: if object_result.warnings: ...	[ "def", "print_file_results", "(", "file_result", ")", ":", "print_results_header", "(", "file_result", ".", "filepath", ",", "file_result", ".", "is_valid", ")", "for", "object_result", "in", "file_result", ".", "object_results", ":", "if", "object_result", ".", "...	30.176471	18.117647
def validate(self, model_name, object): """Validate an object against its swagger model""" if model_name not in self.swagger_dict['definitions']: raise ValidationError("Swagger spec has no definition for model %s" % model_name) model_def = self.swagger_dict['definitions'][model_name]...	[ "def", "validate", "(", "self", ",", "model_name", ",", "object", ")", ":", "if", "model_name", "not", "in", "self", ".", "swagger_dict", "[", "'definitions'", "]", ":", "raise", "ValidationError", "(", "\"Swagger spec has no definition for model %s\"", "%", "mode...	61.428571	19.142857
def get_institutes_trend_graph_urls(start, end): """ Get all institute trend graphs. """ graph_list = [] for institute in Institute.objects.all(): urls = get_institute_trend_graph_url(institute, start, end) urls['institute'] = institute graph_list.append(urls) return graph_list	[ "def", "get_institutes_trend_graph_urls", "(", "start", ",", "end", ")", ":", "graph_list", "=", "[", "]", "for", "institute", "in", "Institute", ".", "objects", ".", "all", "(", ")", ":", "urls", "=", "get_institute_trend_graph_url", "(", "institute", ",", ...	31.1	17.2
def get_seebeck(self, output='eigs', doping_levels=True): """ Gives the seebeck coefficient (microV/K) in either a full 3x3 tensor form, as 3 eigenvalues, or as the average value (trace/3.0) If doping_levels=True, the results are given at different p and n doping ...	[ "def", "get_seebeck", "(", "self", ",", "output", "=", "'eigs'", ",", "doping_levels", "=", "True", ")", ":", "return", "BoltztrapAnalyzer", ".", "_format_to_output", "(", "self", ".", "_seebeck", ",", "self", ".", "_seebeck_doping", ",", "output", ",", "dop...	49.382353	22.441176
def get_tokens(tokens): """Recursively gets tokens from a match list Args: tokens : List of tokens ['(', 'S', '(', 'NP', ')', ')'] Returns: Stack of tokens """ tokens = tokens[1:-1] ret = [] start = 0 stack = 0 for i in range(len(tokens)): if tokens[i] ==...	[ "def", "get_tokens", "(", "tokens", ")", ":", "tokens", "=", "tokens", "[", "1", ":", "-", "1", "]", "ret", "=", "[", "]", "start", "=", "0", "stack", "=", "0", "for", "i", "in", "range", "(", "len", "(", "tokens", ")", ")", ":", "if", "token...	26.931034	18.275862
def get_all_last_24h_kline(self): """ 获取所有ticker :param _async: :return: """ params = {} url = u.MARKET_URL + '/market/tickers' def _wrapper(_func): @wraps(_func) def handle(): _func(http_get_request(url, params)) ...	[ "def", "get_all_last_24h_kline", "(", "self", ")", ":", "params", "=", "{", "}", "url", "=", "u", ".", "MARKET_URL", "+", "'/market/tickers'", "def", "_wrapper", "(", "_func", ")", ":", "@", "wraps", "(", "_func", ")", "def", "handle", "(", ")", ":", ...	20.823529	17.882353
def retrieve_profile_extension_records(self, profile_extension, field_list, ids_to_retrieve, query_column='RIID'): """ Responsys.retrieveProfileExtensionRecords call Accepts: InteractObject profile_extension list field_list ...	[ "def", "retrieve_profile_extension_records", "(", "self", ",", "profile_extension", ",", "field_list", ",", "ids_to_retrieve", ",", "query_column", "=", "'RIID'", ")", ":", "profile_extension", "=", "profile_extension", ".", "get_soap_object", "(", "self", ".", "clien...	40.411765	19.529412
def mimeData( self, items ): """ Returns the mime data for dragging for this instance. :param items \| [<QTableWidgetItem>, ..] """ func = self.dataCollector() if ( func ): return func(self, items) return super(XTableWidget, s...	[ "def", "mimeData", "(", "self", ",", "items", ")", ":", "func", "=", "self", ".", "dataCollector", "(", ")", "if", "(", "func", ")", ":", "return", "func", "(", "self", ",", "items", ")", "return", "super", "(", "XTableWidget", ",", "self", ")", "....	30	13.636364
def resume(self, mask, filename, port, pos): """Resume a DCC send""" self.connections['send']['masks'][mask][port].offset = pos message = 'DCC ACCEPT %s %d %d' % (filename, port, pos) self.bot.ctcp(mask, message)	[ "def", "resume", "(", "self", ",", "mask", ",", "filename", ",", "port", ",", "pos", ")", ":", "self", ".", "connections", "[", "'send'", "]", "[", "'masks'", "]", "[", "mask", "]", "[", "port", "]", ".", "offset", "=", "pos", "message", "=", "'D...	48	11.4
def _str_member_list(self, name): """ Generate a member listing, autosummary:: table where possible, and a table where not. """ out = [] if self[name]: out += ['.. rubric:: %s' % name, ''] prefix = getattr(self, '_name', '') if prefix...	[ "def", "_str_member_list", "(", "self", ",", "name", ")", ":", "out", "=", "[", "]", "if", "self", "[", "name", "]", ":", "out", "+=", "[", "'.. rubric:: %s'", "%", "name", ",", "''", "]", "prefix", "=", "getattr", "(", "self", ",", "'_name'", ",",...	36.55814	18.372093
def spinner(self, spinner=None): """Setter for spinner property. Parameters ---------- spinner : dict, str Defines the spinner value with frame and interval """ self._spinner = self._get_spinner(spinner) self._frame_index = 0 self._text_index ...	[ "def", "spinner", "(", "self", ",", "spinner", "=", "None", ")", ":", "self", ".", "_spinner", "=", "self", ".", "_get_spinner", "(", "spinner", ")", "self", ".", "_frame_index", "=", "0", "self", ".", "_text_index", "=", "0" ]	28.454545	14.454545
def is_valid_chunksize(chunk_size): """Check if size is valid.""" min_csize = current_app.config['FILES_REST_MULTIPART_CHUNKSIZE_MIN'] max_csize = current_app.config['FILES_REST_MULTIPART_CHUNKSIZE_MAX'] return chunk_size >= min_csize and chunk_size <= max_csize	[ "def", "is_valid_chunksize", "(", "chunk_size", ")", ":", "min_csize", "=", "current_app", ".", "config", "[", "'FILES_REST_MULTIPART_CHUNKSIZE_MIN'", "]", "max_csize", "=", "current_app", ".", "config", "[", "'FILES_REST_MULTIPART_CHUNKSIZE_MAX'", "]", "return", "chunk...	58	20.6
def _create_singleframe_bvals_bvecs(grouped_dicoms, bval_file, bvec_file, nifti, nifti_file): """ Write the bvals from the sorted dicom files to a bval file """ # create the empty arrays bvals = numpy.zeros([len(grouped_dicoms)], dtype=numpy.int32) bvecs = numpy.zeros([len(grouped_dicoms), 3]) ...	[ "def", "_create_singleframe_bvals_bvecs", "(", "grouped_dicoms", ",", "bval_file", ",", "bvec_file", ",", "nifti", ",", "nifti_file", ")", ":", "# create the empty arrays", "bvals", "=", "numpy", ".", "zeros", "(", "[", "len", "(", "grouped_dicoms", ")", "]", ",...	46.875	23.175
def debug_object(obj, log_level: int = logging.DEBUG) -> None: """ Sends details about a Python to the log, specifically its ``repr()`` representation, and all of its attributes with their name, value, and type. Args: obj: object to debug log_level: log level to use; default is ``loggin...	[ "def", "debug_object", "(", "obj", ",", "log_level", ":", "int", "=", "logging", ".", "DEBUG", ")", "->", "None", ":", "msgs", "=", "[", "\"For {o!r}:\"", ".", "format", "(", "o", "=", "obj", ")", "]", "for", "attrname", "in", "dir", "(", "obj", ")...	40.2	17.266667
def path_lookup(data_obj, xj_path, create_dict_path=False): """Looks up a xj path in the data_obj. :param dict\|list data_obj: An object to look into. :param str xj_path: A path to extract data from. :param bool create_dict_path: Create an element if type is specified. :return: A tuple where 0 value...	[ "def", "path_lookup", "(", "data_obj", ",", "xj_path", ",", "create_dict_path", "=", "False", ")", ":", "if", "not", "xj_path", "or", "xj_path", "==", "'.'", ":", "return", "data_obj", ",", "True", "res", "=", "list", "(", "split", "(", "xj_path", ",", ...	41.836735	17.77551
def sample(self): """ This is the core sampling method. Samples a state from a demonstration, in accordance with the configuration. """ # chooses a sampling scheme randomly based on the mixing ratios seed = random.uniform(0, 1) ratio = np.cumsum(self.scheme_ratio...	[ "def", "sample", "(", "self", ")", ":", "# chooses a sampling scheme randomly based on the mixing ratios", "seed", "=", "random", ".", "uniform", "(", "0", ",", "1", ")", "ratio", "=", "np", ".", "cumsum", "(", "self", ".", "scheme_ratios", ")", "ratio", "=", ...	33.4375	18.9375
def validate(self, cmd, messages=None): """Returns True if the given Command is valid, False otherwise. Validation error messages are appended to an optional messages array. """ valid = True args = [ arg for arg in cmd.args if arg is not None ] if self.nargs != ...	[ "def", "validate", "(", "self", ",", "cmd", ",", "messages", "=", "None", ")", ":", "valid", "=", "True", "args", "=", "[", "arg", "for", "arg", "in", "cmd", ".", "args", "if", "arg", "is", "not", "None", "]", "if", "self", ".", "nargs", "!=", ...	36.586207	17.551724
def apply_filters(target, lines): """ Applys filters to the lines of a datasource. This function is used only in integration tests. Filters are applied in an equivalent but more performant way at run time. """ filters = get_filters(target) if filters: for l in lines: if a...	[ "def", "apply_filters", "(", "target", ",", "lines", ")", ":", "filters", "=", "get_filters", "(", "target", ")", "if", "filters", ":", "for", "l", "in", "lines", ":", "if", "any", "(", "f", "in", "l", "for", "f", "in", "filters", ")", ":", "yield"...	29.5	17.357143
def add_header(self, name, value): '''Attach an email header to send with the message. :param name: The name of the header value. :param value: The header value. ''' if self.headers is None: self.headers = [] self.headers.append(dict(Name=name, Value=value))	[ "def", "add_header", "(", "self", ",", "name", ",", "value", ")", ":", "if", "self", ".", "headers", "is", "None", ":", "self", ".", "headers", "=", "[", "]", "self", ".", "headers", ".", "append", "(", "dict", "(", "Name", "=", "name", ",", "Val...	34.555556	15.666667
def is_all_field_none(self): """ :rtype: bool """ if self._uuid is not None: return False if self._avatar is not None: return False if self._public_nick_name is not None: return False if self._display_name is not None: ...	[ "def", "is_all_field_none", "(", "self", ")", ":", "if", "self", ".", "_uuid", "is", "not", "None", ":", "return", "False", "if", "self", ".", "_avatar", "is", "not", "None", ":", "return", "False", "if", "self", ".", "_public_nick_name", "is", "not", ...	19.238095	18.761905
def generic_visit(self, node): """Called if no explicit visitor function exists for a node.""" for field_name in node._fields: setattr(node, field_name, self.visit(getattr(node, field_name))) return node	[ "def", "generic_visit", "(", "self", ",", "node", ")", ":", "for", "field_name", "in", "node", ".", "_fields", ":", "setattr", "(", "node", ",", "field_name", ",", "self", ".", "visit", "(", "getattr", "(", "node", ",", "field_name", ")", ")", ")", "...	47	13.6
def _hash_file(self, algo): """Get the hash of the given file :param algo: The algorithm to use. :type algo: str :return: The hexdigest of the data. :rtype: str """ # We het the algorithm function. hash_data = getattr(hashlib, algo)() with open...	[ "def", "_hash_file", "(", "self", ",", "algo", ")", ":", "# We het the algorithm function.", "hash_data", "=", "getattr", "(", "hashlib", ",", "algo", ")", "(", ")", "with", "open", "(", "self", ".", "path", ",", "\"rb\"", ")", "as", "file", ":", "# We o...	25.875	16.291667
def _namematcher(regex): """Checks if a target name matches with an input regular expression.""" matcher = re_compile(regex) def match(target): target_name = getattr(target, '__name__', '') result = matcher.match(target_name) return result return match	[ "def", "_namematcher", "(", "regex", ")", ":", "matcher", "=", "re_compile", "(", "regex", ")", "def", "match", "(", "target", ")", ":", "target_name", "=", "getattr", "(", "target", ",", "'__name__'", ",", "''", ")", "result", "=", "matcher", ".", "ma...	25.909091	20.181818
def getRing(startAtom, atomSet, lookup, oatoms): """getRing(startAtom, atomSet, lookup, oatoms)->atoms, bonds starting at startAtom do a bfs traversal through the atoms in atomSet and return the smallest ring found returns (), () on failure note: atoms and bonds are not returned in traversal order"...	[ "def", "getRing", "(", "startAtom", ",", "atomSet", ",", "lookup", ",", "oatoms", ")", ":", "path", "=", "{", "}", "bpaths", "=", "{", "}", "for", "atomID", "in", "atomSet", ".", "keys", "(", ")", ":", "# initially the paths are empty", "path", "[", "a...	29.209677	19.177419
def getIPaddresses(self): """identify the IP addresses where this process client will launch the SC2 client""" if not self.ipAddress: self.ipAddress = ipAddresses.getAll() # update with IP address return self.ipAddress	[ "def", "getIPaddresses", "(", "self", ")", ":", "if", "not", "self", ".", "ipAddress", ":", "self", ".", "ipAddress", "=", "ipAddresses", ".", "getAll", "(", ")", "# update with IP address", "return", "self", ".", "ipAddress" ]	50	14
def getPrioritySortkey(self): """Returns the key that will be used to sort the current Analysis Request based on both its priority and creation date. On ASC sorting, the oldest item with highest priority will be displayed. :return: string used for sorting """ priority = s...	[ "def", "getPrioritySortkey", "(", "self", ")", ":", "priority", "=", "self", ".", "getPriority", "(", ")", "created_date", "=", "self", ".", "created", "(", ")", ".", "ISO8601", "(", ")", "return", "'%s.%s'", "%", "(", "priority", ",", "created_date", ")...	47.444444	10.111111
def current(): """ Returns the current environment manager for the projex system. :return <EnvManager> """ if not EnvManager._current: path = os.environ.get('PROJEX_ENVMGR_PATH') module = os.environ.get('PROJEX_ENVMGR_MODULE') clsn...	[ "def", "current", "(", ")", ":", "if", "not", "EnvManager", ".", "_current", ":", "path", "=", "os", ".", "environ", ".", "get", "(", "'PROJEX_ENVMGR_PATH'", ")", "module", "=", "os", ".", "environ", ".", "get", "(", "'PROJEX_ENVMGR_MODULE'", ")", "clsna...	34.648649	19.567568
def mag_roll(RAW_IMU, inclination, declination): '''estimate roll from mag''' m = mag_rotation(RAW_IMU, inclination, declination) (r, p, y) = m.to_euler() return degrees(r)	[ "def", "mag_roll", "(", "RAW_IMU", ",", "inclination", ",", "declination", ")", ":", "m", "=", "mag_rotation", "(", "RAW_IMU", ",", "inclination", ",", "declination", ")", "(", "r", ",", "p", ",", "y", ")", "=", "m", ".", "to_euler", "(", ")", "retur...	36.8	12.4
def harvest(lancet, config_section): """Construct a new Harvest client.""" url, username, password = lancet.get_credentials( config_section, credentials_checker ) project_id_getter = lancet.get_instance_from_config( "timer", "project_id_getter", lancet ) task_id_getter = lancet....	[ "def", "harvest", "(", "lancet", ",", "config_section", ")", ":", "url", ",", "username", ",", "password", "=", "lancet", ".", "get_credentials", "(", "config_section", ",", "credentials_checker", ")", "project_id_getter", "=", "lancet", ".", "get_instance_from_co...	29.142857	16.047619
def location(self, wave_field, depth=None, index=None): """Create a Location for a specific depth. Parameters ---------- wave_field: str Wave field. See :class:`Location` for possible values. depth: float, optional Depth corresponding to the :class`Locati...	[ "def", "location", "(", "self", ",", "wave_field", ",", "depth", "=", "None", ",", "index", "=", "None", ")", ":", "if", "not", "isinstance", "(", "wave_field", ",", "WaveField", ")", ":", "wave_field", "=", "WaveField", "[", "wave_field", "]", "if", "...	34.195122	17.536585
def forward(self, # pylint: disable=arguments-differ inputs: torch.Tensor, mask: torch.LongTensor) -> torch.Tensor: """ Parameters ---------- inputs : ``torch.Tensor``, required. A Tensor of shape ``(batch_size, sequence_length, hidden_size)``...	[ "def", "forward", "(", "self", ",", "# pylint: disable=arguments-differ", "inputs", ":", "torch", ".", "Tensor", ",", "mask", ":", "torch", ".", "LongTensor", ")", "->", "torch", ".", "Tensor", ":", "batch_size", ",", "total_sequence_length", "=", "mask", ".",...	54.545455	28.727273
def pb(name, data, display_name=None, description=None): """Create a legacy text summary protobuf. Arguments: name: A name for the generated node. Will also serve as a series name in TensorBoard. data: A Python bytestring (of type bytes), or Unicode string. Or a numpy data array of those types....	[ "def", "pb", "(", "name", ",", "data", ",", "display_name", "=", "None", ",", "description", "=", "None", ")", ":", "# TODO(nickfelt): remove on-demand imports once dep situation is fixed.", "import", "tensorflow", ".", "compat", ".", "v1", "as", "tf", "try", ":",...	34.157895	20.315789
def get_item_balances(self, acc: Account) -> list: """ Returns balances of items of the invoice. :param acc: Account :return: list (AccountEntry, Decimal) in item id order """ items = [] entries = self.get_entries(acc) for item in entries.filter(source_inv...	[ "def", "get_item_balances", "(", "self", ",", "acc", ":", "Account", ")", "->", "list", ":", "items", "=", "[", "]", "entries", "=", "self", ".", "get_entries", "(", "acc", ")", "for", "item", "in", "entries", ".", "filter", "(", "source_invoice", "=",...	43.142857	15.714286
def get_common_payload_template(services=None): """ Get a template dictionary that can be used to create a payload object. TODO: services s/b a list. Specify required fields for each service in list. None means all services. """ available_services = {'citrine', 'materials_commons', '...	[ "def", "get_common_payload_template", "(", "services", "=", "None", ")", ":", "available_services", "=", "{", "'citrine'", ",", "'materials_commons'", ",", "'materials_data_facility'", "}", "if", "services", "is", "None", ":", "services", "=", "list", "(", "availa...	36.696429	12.535714
def readConfig(self, configuration): """Read configuration from dict. Read configuration from a JSON configuration file. :param configuration: configuration to load. :type configuration: dict. """ self.__logger.debug("Reading configuration") self.city = configur...	[ "def", "readConfig", "(", "self", ",", "configuration", ")", ":", "self", ".", "__logger", ".", "debug", "(", "\"Reading configuration\"", ")", "self", ".", "city", "=", "configuration", "[", "\"name\"", "]", "self", ".", "__logger", ".", "info", "(", "\"C...	38.255814	15.255814
def read_tsv(cls, path, encoding='utf-8'): """Read a gene set database from a tab-delimited text file. Parameters ---------- path: str The path name of the the file. encoding: str The encoding of the text file. Returns ------- Non...	[ "def", "read_tsv", "(", "cls", ",", "path", ",", "encoding", "=", "'utf-8'", ")", ":", "gene_sets", "=", "[", "]", "n", "=", "0", "with", "open", "(", "path", ",", "'rb'", ")", "as", "fh", ":", "reader", "=", "csv", ".", "reader", "(", "fh", ",...	29.28	16.4
def p_property_assignment(self, p): """property_assignment \ : property_name COLON assignment_expr \| GETPROP property_name LPAREN RPAREN LBRACE function_body RBRACE \| SETPROP property_name LPAREN property_set_parameter_list RPAREN\ LBRACE function_body R...	[ "def", "p_property_assignment", "(", "self", ",", "p", ")", ":", "if", "len", "(", "p", ")", "==", "4", ":", "p", "[", "0", "]", "=", "self", ".", "asttypes", ".", "Assign", "(", "left", "=", "p", "[", "1", "]", ",", "op", "=", "p", "[", "2...	42.941176	17.235294
def create_token( self, registry_address, initial_alloc=10 ** 6, name='raidentester', symbol='RDT', decimals=2, timeout=60, auto_register=True, ): """ Create a proxy for a new HumanStandardToken (ERC20), that is ...	[ "def", "create_token", "(", "self", ",", "registry_address", ",", "initial_alloc", "=", "10", "**", "6", ",", "name", "=", "'raidentester'", ",", "symbol", "=", "'RDT'", ",", "decimals", "=", "2", ",", "timeout", "=", "60", ",", "auto_register", "=", "Tr...	36.833333	18.190476
def __geomToPointList(self, geom): """ converts a geometry object to a common.Geometry object """ sr = geom.spatialReference wkid = None wkt = None if sr is None: if self._wkid is None and self._wkt is not None: wkt = self._wkt else: ...	[ "def", "__geomToPointList", "(", "self", ",", "geom", ")", ":", "sr", "=", "geom", ".", "spatialReference", "wkid", "=", "None", "wkt", "=", "None", "if", "sr", "is", "None", ":", "if", "self", ".", "_wkid", "is", "None", "and", "self", ".", "_wkt", ...	31.9	15.5
def draw_collection(self, ax, collection, force_pathtrans=None, force_offsettrans=None): """Process a matplotlib collection and call renderer.draw_collection""" (transform, transOffset, offsets, paths) = collection._prepare_points() offse...	[ "def", "draw_collection", "(", "self", ",", "ax", ",", "collection", ",", "force_pathtrans", "=", "None", ",", "force_offsettrans", "=", "None", ")", ":", "(", "transform", ",", "transOffset", ",", "offsets", ",", "paths", ")", "=", "collection", ".", "_pr...	47.25	20.454545
def all(cls, client, symbols): """" fetch data for multiple stocks """ params = {"symbol": ",".join(symbols)} request_url = "https://api.robinhood.com/instruments/" data = client.get(request_url, params=params) results = data["results"] while data["next"...	[ "def", "all", "(", "cls", ",", "client", ",", "symbols", ")", ":", "params", "=", "{", "\"symbol\"", ":", "\",\"", ".", "join", "(", "symbols", ")", "}", "request_url", "=", "\"https://api.robinhood.com/instruments/\"", "data", "=", "client", ".", "get", "...	30	12.642857
def _get_entity_by_class(self, entity_cls): """Fetch Entity record with Entity class details""" entity_qualname = fully_qualified_name(entity_cls) if entity_qualname in self._registry: return self._registry[entity_qualname] else: return self._find_entity_in_record...	[ "def", "_get_entity_by_class", "(", "self", ",", "entity_cls", ")", ":", "entity_qualname", "=", "fully_qualified_name", "(", "entity_cls", ")", "if", "entity_qualname", "in", "self", ".", "_registry", ":", "return", "self", ".", "_registry", "[", "entity_qualname...	50	15
def get_intrinsic_rewards(self, curr_info, next_info): """ Generates intrinsic reward used for Curiosity-based training. :BrainInfo curr_info: Current BrainInfo. :BrainInfo next_info: Next BrainInfo. :return: Intrinsic rewards for all agents. """ if self.use_curio...	[ "def", "get_intrinsic_rewards", "(", "self", ",", "curr_info", ",", "next_info", ")", ":", "if", "self", ".", "use_curiosity", ":", "if", "len", "(", "curr_info", ".", "agents", ")", "==", "0", ":", "return", "[", "]", "feed_dict", "=", "{", "self", "....	51.75	23
def custom_decode(encoding): """Overrides encoding when charset declaration or charset determination is a subset of a larger charset. Created because of issues with Chinese websites""" encoding = encoding.lower() alternates = { 'big5': 'big5hkscs', 'gb2312': 'gb18030', ...	[ "def", "custom_decode", "(", "encoding", ")", ":", "encoding", "=", "encoding", ".", "lower", "(", ")", "alternates", "=", "{", "'big5'", ":", "'big5hkscs'", ",", "'gb2312'", ":", "'gb18030'", ",", "'ascii'", ":", "'utf-8'", ",", "'MacCyrillic'", ":", "'cp...	30.933333	13.533333
def _GetPurgeMessage(most_recent_step, most_recent_wall_time, event_step, event_wall_time, num_expired_scalars, num_expired_histos, num_expired_comp_histos, num_expired_images, num_expired_audio): """Return the string message associated with TensorBoard p...	[ "def", "_GetPurgeMessage", "(", "most_recent_step", ",", "most_recent_wall_time", ",", "event_step", ",", "event_wall_time", ",", "num_expired_scalars", ",", "num_expired_histos", ",", "num_expired_comp_histos", ",", "num_expired_images", ",", "num_expired_audio", ")", ":",...	66.8	24.866667
def load_simple_endpoint(category, name): '''fetches the entry point for a plugin and calls it with the given aux_info''' for ep in pkg_resources.iter_entry_points(category): if ep.name == name: return ep.load() raise KeyError(name)	[ "def", "load_simple_endpoint", "(", "category", ",", "name", ")", ":", "for", "ep", "in", "pkg_resources", ".", "iter_entry_points", "(", "category", ")", ":", "if", "ep", ".", "name", "==", "name", ":", "return", "ep", ".", "load", "(", ")", "raise", ...	37.428571	16.285714
def global_get(self, key): """Return the value for the given key in the ``globals`` table.""" key = self.pack(key) r = self.sql('global_get', key).fetchone() if r is None: raise KeyError("Not set") return self.unpack(r[0])	[ "def", "global_get", "(", "self", ",", "key", ")", ":", "key", "=", "self", ".", "pack", "(", "key", ")", "r", "=", "self", ".", "sql", "(", "'global_get'", ",", "key", ")", ".", "fetchone", "(", ")", "if", "r", "is", "None", ":", "raise", "Key...	38.285714	9.428571
def check_dataset(self, dataset_id, project_id=None): """Check to see if a dataset exists. Parameters ---------- dataset_id : str Dataset unique id project_id: str, optional The project the dataset is in Returns ------- bool ...	[ "def", "check_dataset", "(", "self", ",", "dataset_id", ",", "project_id", "=", "None", ")", ":", "dataset", "=", "self", ".", "get_dataset", "(", "dataset_id", ",", "project_id", ")", "return", "bool", "(", "dataset", ")" ]	27.529412	17.764706
def get_indexes(self, db_name, tbl_name, max_indexes): """ Parameters: - db_name - tbl_name - max_indexes """ self.send_get_indexes(db_name, tbl_name, max_indexes) return self.recv_get_indexes()	[ "def", "get_indexes", "(", "self", ",", "db_name", ",", "tbl_name", ",", "max_indexes", ")", ":", "self", ".", "send_get_indexes", "(", "db_name", ",", "tbl_name", ",", "max_indexes", ")", "return", "self", ".", "recv_get_indexes", "(", ")" ]	24.555556	15
def encode(cls, value): """ take a list and turn it into a utf-8 encoded byte-string for redis. :param value: list :return: bytes """ try: coerced = list(value) if coerced == value: return json.dumps(coerced).encode(cls._encoding) ...	[ "def", "encode", "(", "cls", ",", "value", ")", ":", "try", ":", "coerced", "=", "list", "(", "value", ")", "if", "coerced", "==", "value", ":", "return", "json", ".", "dumps", "(", "coerced", ")", ".", "encode", "(", "cls", ".", "_encoding", ")", ...	26	18
def get(self, key): """ Fetch entry from database. """ c = self.conn.cursor() for row in c.execute("SELECT key, nonce, key_handle, aead, oath_C, oath_T FROM oath WHERE key = ?", (key,)): return ValOathEntry(row) raise Exception("OATH token for '%s' not found in database (%s)"...	[ "def", "get", "(", "self", ",", "key", ")", ":", "c", "=", "self", ".", "conn", ".", "cursor", "(", ")", "for", "row", "in", "c", ".", "execute", "(", "\"SELECT key, nonce, key_handle, aead, oath_C, oath_T FROM oath WHERE key = ?\"", ",", "(", "key", ",", ")...	56.5	27.833333
def run_multiple(self, eventLoops): """run the event loops in the background. Args: eventLoops (list): a list of event loops to run """ self.nruns += len(eventLoops) return self.communicationChannel.put_multiple(eventLoops)	[ "def", "run_multiple", "(", "self", ",", "eventLoops", ")", ":", "self", ".", "nruns", "+=", "len", "(", "eventLoops", ")", "return", "self", ".", "communicationChannel", ".", "put_multiple", "(", "eventLoops", ")" ]	26.9	19.9
def dataset( node_parser, include=lambda x: True, input_transform=None, target_transform=None): """Convert immediate children of a GroupNode into a torch.data.Dataset Keyword arguments * node_parser=callable that converts a DataNode to a Dataset item * include=lambda x: T...	[ "def", "dataset", "(", "node_parser", ",", "include", "=", "lambda", "x", ":", "True", ",", "input_transform", "=", "None", ",", "target_transform", "=", "None", ")", ":", "def", "_dataset", "(", "node", ",", "paths", ")", ":", "# pylint: disable=unused-argu...	38.4	17.3
def wake_lock_size(self): """Get the size of the current wake lock.""" output = self.adb_shell(WAKE_LOCK_SIZE_CMD) if not output: return None return int(output.split("=")[1].strip())	[ "def", "wake_lock_size", "(", "self", ")", ":", "output", "=", "self", ".", "adb_shell", "(", "WAKE_LOCK_SIZE_CMD", ")", "if", "not", "output", ":", "return", "None", "return", "int", "(", "output", ".", "split", "(", "\"=\"", ")", "[", "1", "]", ".", ...	36.833333	11.5
def extractDates(self, inp): """Extract semantic date information from an input string. In effect, runs both parseDay and parseTime on the input string and merges the results to produce a comprehensive datetime object. Args: inp (str): Input string to be parsed. ...	[ "def", "extractDates", "(", "self", ",", "inp", ")", ":", "def", "merge", "(", "param", ")", ":", "day", ",", "time", "=", "param", "if", "not", "(", "day", "or", "time", ")", ":", "return", "None", "if", "not", "day", ":", "return", "time", "if"...	31.433333	19.6
def debug(self, s, level=2): """Write a debug message.""" self.write(s, level=level, color='white')	[ "def", "debug", "(", "self", ",", "s", ",", "level", "=", "2", ")", ":", "self", ".", "write", "(", "s", ",", "level", "=", "level", ",", "color", "=", "'white'", ")" ]	37.666667	7
def pingback_url(self, server_name, target_url): """ Do a pingback call for the target URL. """ try: server = ServerProxy(server_name) reply = server.pingback.ping(self.entry_url, target_url) except (Error, socket.error): reply = '%s cannot be ...	[ "def", "pingback_url", "(", "self", ",", "server_name", ",", "target_url", ")", ":", "try", ":", "server", "=", "ServerProxy", "(", "server_name", ")", "reply", "=", "server", ".", "pingback", ".", "ping", "(", "self", ".", "entry_url", ",", "target_url", ...	35.3	11.3
def cancel_pending_requests(self): '''Cancel all pending requests.''' exception = CancelledError() for _request, event in self._requests.values(): event.result = exception event.set() self._requests.clear()	[ "def", "cancel_pending_requests", "(", "self", ")", ":", "exception", "=", "CancelledError", "(", ")", "for", "_request", ",", "event", "in", "self", ".", "_requests", ".", "values", "(", ")", ":", "event", ".", "result", "=", "exception", "event", ".", ...	36.571429	8.285714
def get_sorted_nts_omit_section(self, hdrgo_prt, hdrgo_sort): """Return a flat list of sections (wo/section names) with GO terms grouped and sorted.""" nts_flat = [] # print("SSSS SorterNts:get_sorted_nts_omit_section(hdrgo_prt={}, hdrgo_sort={})".format( # hdrgo_prt, hdrgo_sort)) ...	[ "def", "get_sorted_nts_omit_section", "(", "self", ",", "hdrgo_prt", ",", "hdrgo_sort", ")", ":", "nts_flat", "=", "[", "]", "# print(\"SSSS SorterNts:get_sorted_nts_omit_section(hdrgo_prt={}, hdrgo_sort={})\".format(", "# hdrgo_prt, hdrgo_sort))", "hdrgos_seen", "=", "set", ...	62.0625	25
def FromMicroseconds(self, micros): """Converts microseconds to Duration.""" self._NormalizeDuration( micros // _MICROS_PER_SECOND, (micros % _MICROS_PER_SECOND) * _NANOS_PER_MICROSECOND)	[ "def", "FromMicroseconds", "(", "self", ",", "micros", ")", ":", "self", ".", "_NormalizeDuration", "(", "micros", "//", "_MICROS_PER_SECOND", ",", "(", "micros", "%", "_MICROS_PER_SECOND", ")", "*", "_NANOS_PER_MICROSECOND", ")" ]	41.4	8.6
def run_with_werkzeug(self, options): """Run with werkzeug simple wsgi container.""" threaded = self.threads is not None and (self.threads > 0) self.app.run( host=self.host, port=self.port, debug=self.debug, threaded=threaded, optio...	[ "def", "run_with_werkzeug", "(", "self", ",", "", "", "options", ")", ":", "threaded", "=", "self", ".", "threads", "is", "not", "None", "and", "(", "self", ".", "threads", ">", "0", ")", "self", ".", "app", ".", "run", "(", "host", "=", "self", ...	32.3	14.3
def set_attributes(trace): """Automatically set attributes for Google Cloud environment.""" spans = trace.get('spans') for span in spans: if span.get('attributes') is None: span['attributes'] = {} if is_gae_environment(): set_gae_attributes(span) set_common_...	[ "def", "set_attributes", "(", "trace", ")", ":", "spans", "=", "trace", ".", "get", "(", "'spans'", ")", "for", "span", "in", "spans", ":", "if", "span", ".", "get", "(", "'attributes'", ")", "is", "None", ":", "span", "[", "'attributes'", "]", "=", ...	28.692308	14.846154
def get_member_details(self, member_id, **kwargs): # noqa: E501 """Get member details # noqa: E501 Get your member details (quota and role) # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> t...	[ "def", "get_member_details", "(", "self", ",", "member_id", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async'", ")", ":", "return", "self", ".", "get_me...	43.095238	20.142857
def get_enrollments_for_regid(self, regid, params={}, include_courses=True): """ Return a list of enrollments for the passed user regid. https://canvas.instructure.com/doc/api/enrollments.html#method.enrollments_api.index """ sis_user_id = self....	[ "def", "get_enrollments_for_regid", "(", "self", ",", "regid", ",", "params", "=", "{", "}", ",", "include_courses", "=", "True", ")", ":", "sis_user_id", "=", "self", ".", "_sis_id", "(", "regid", ",", "sis_field", "=", "\"user\"", ")", "url", "=", "USE...	41.125	19.3125
def action_rename(self): """ Rename a shortcut """ # get old and new name from args old = self.args['<old>'] new = self.args['<new>'] # select the old shortcut self.db_query(''' SELECT id FROM shortcuts WHERE name=? ''', (old,)) ...	[ "def", "action_rename", "(", "self", ")", ":", "# get old and new name from args", "old", "=", "self", ".", "args", "[", "'<old>'", "]", "new", "=", "self", ".", "args", "[", "'<new>'", "]", "# select the old shortcut", "self", ".", "db_query", "(", "'''\n ...	24.852941	18.323529
def _set_protocol_vrrp(self, v, load=False): """ Setter method for protocol_vrrp, mapped from YANG variable /protocol_vrrp (container) If this variable is read-only (config: false) in the source YANG file, then _set_protocol_vrrp is considered as a private method. Backends looking to populate this v...	[ "def", "_set_protocol_vrrp", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ",", "...	73.833333	36.041667
def getSpec(cls): """ Overrides :meth:`~nupic.bindings.regions.PyRegion.PyRegion.getSpec`. The parameters collection is constructed based on the parameters specified by the various components (spatialSpec, temporalSpec and otherSpec) """ spec = cls.getBaseSpec() t, o = _getAdditionalSpecs(t...	[ "def", "getSpec", "(", "cls", ")", ":", "spec", "=", "cls", ".", "getBaseSpec", "(", ")", "t", ",", "o", "=", "_getAdditionalSpecs", "(", "temporalImp", "=", "gDefaultTemporalImp", ")", "spec", "[", "'parameters'", "]", ".", "update", "(", "t", ")", "s...	32.461538	21.538462
def _check_configure_args(configure_args: Dict[str, Any]) -> Dict[str, Any]: """ Check the arguments passed to configure. Raises an exception on failure. On success, returns a dict of configure_args with any necessary mutations. """ # SSID must always be present if not configure_args.get('ssid'...	[ "def", "_check_configure_args", "(", "configure_args", ":", "Dict", "[", "str", ",", "Any", "]", ")", "->", "Dict", "[", "str", ",", "Any", "]", ":", "# SSID must always be present", "if", "not", "configure_args", ".", "get", "(", "'ssid'", ")", "or", "not...	42	18.243243
def build(cls, seqs: Iterable[int], uid: bool = False) -> 'SequenceSet': """Build a new sequence set that contains the given values using as few groups as possible. Args: seqs: The sequence values to build. uid: True if the sequences refer to message UIDs. """ ...	[ "def", "build", "(", "cls", ",", "seqs", ":", "Iterable", "[", "int", "]", ",", "uid", ":", "bool", "=", "False", ")", "->", "'SequenceSet'", ":", "seqs_list", "=", "sorted", "(", "set", "(", "seqs", ")", ")", "groups", ":", "List", "[", "Union", ...	37.392857	10.607143
def add_args(): """Adds commandline arguments and formatted Help""" parser = argparse.ArgumentParser() parser.add_argument('-host', action='store', dest='host', default='127.0.0.1', help='DEFAULT "127.0.0.1"') parser.add_argument('-port', action='store', dest='port', default='2947', help='DEFAULT 2947'...	[ "def", "add_args", "(", ")", ":", "parser", "=", "argparse", ".", "ArgumentParser", "(", ")", "parser", ".", "add_argument", "(", "'-host'", ",", "action", "=", "'store'", ",", "dest", "=", "'host'", ",", "default", "=", "'127.0.0.1'", ",", "help", "=", ...	87.684211	57.736842
def send(self, request_id, payload): """ Send a request to Kafka Arguments:: request_id (int): can be any int (used only for debug logging...) payload: an encoded kafka packet (see KafkaProtocol) """ log.debug("About to send %d bytes to Kafka, request %d...	[ "def", "send", "(", "self", ",", "request_id", ",", "payload", ")", ":", "log", ".", "debug", "(", "\"About to send %d bytes to Kafka, request %d\"", "%", "(", "len", "(", "payload", ")", ",", "request_id", ")", ")", "# Make sure we have a connection", "if", "no...	30.7	20
def process_document(self, doc): """ Add your code for processing the document """ raw = doc.select_segments("$.raw_content")[0] extractions = doc.extract(self.inferlink_extractor, raw) doc.store(extractions, "inferlink_extraction") return list()	[ "def", "process_document", "(", "self", ",", "doc", ")", ":", "raw", "=", "doc", ".", "select_segments", "(", "\"$.raw_content\"", ")", "[", "0", "]", "extractions", "=", "doc", ".", "extract", "(", "self", ".", "inferlink_extractor", ",", "raw", ")", "d...	32.777778	14.111111
def stop(self, force=False): """ Send a terminate request. :param bool force: ignore the remote devices response """ if self._initialized: self.send(C1218TerminateRequest()) data = self.recv() if data == b'\x00' or force: self._initialized = False self._toggle_bit = False return True r...	[ "def", "stop", "(", "self", ",", "force", "=", "False", ")", ":", "if", "self", ".", "_initialized", ":", "self", ".", "send", "(", "C1218TerminateRequest", "(", ")", ")", "data", "=", "self", ".", "recv", "(", ")", "if", "data", "==", "b'\\x00'", ...	22.714286	14.428571
def add_node(self, node, attrs = None): """ Add given node to the graph. @attention: While nodes can be of any type, it's strongly recommended to use only numbers and single-line strings as node identifiers if you intend to use write(). @type node: node @param ...	[ "def", "add_node", "(", "self", ",", "node", ",", "attrs", "=", "None", ")", ":", "if", "attrs", "is", "None", ":", "attrs", "=", "[", "]", "if", "(", "node", "not", "in", "self", ".", "node_neighbors", ")", ":", "self", ".", "node_neighbors", "[",...	36.238095	18.142857
def set_data(self, data=None, kwargs): """Set the line data Parameters ---------- data : array-like The data. kwargs : dict Keywoard arguments to pass to MarkerVisual and LineVisal. """ if data is None: pos = None e...	[ "def", "set_data", "(", "self", ",", "data", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "data", "is", "None", ":", "pos", "=", "None", "else", ":", "if", "isinstance", "(", "data", ",", "tuple", ")", ":", "pos", "=", "np", ".", "arra...	38.105263	18.052632
def subtract_and_intersect_circle(self, center, radius): ''' Circle subtraction / intersection only supported by 2-gon regions, otherwise a VennRegionException is thrown. In addition, such an exception will be thrown if the circle to be subtracted is completely within the region and forms a "hol...	[ "def", "subtract_and_intersect_circle", "(", "self", ",", "center", ",", "radius", ")", ":", "if", "len", "(", "self", ".", "arcs", ")", "!=", "2", ":", "raise", "VennRegionException", "(", "\"Circle subtraction and intersection with poly-arc regions is currently only s...	59.864407	31.062147
def grouper(iterable, n, fillvalue=None): """Group iterable by n elements. >>> for t in grouper('abcdefg', 3, fillvalue='x'): ... print(''.join(t)) abc def gxx """ return list(zip_longest([iter(iterable)] n, fillvalue=fillvalue))	[ "def", "grouper", "(", "iterable", ",", "n", ",", "fillvalue", "=", "None", ")", ":", "return", "list", "(", "zip_longest", "(", "", "[", "iter", "(", "iterable", ")", "]", "", "n", ",", "fillvalue", "=", "fillvalue", ")", ")" ]	26	19.7
def enrichment_from_msp(dfmsp, modification="Phospho (STY)"): """ Calculate relative enrichment of peptide modifications from modificationSpecificPeptides.txt. Taking a modifiedsitepeptides ``DataFrame`` returns the relative enrichment of the specified modification in the table. The returned data ...	[ "def", "enrichment_from_msp", "(", "dfmsp", ",", "modification", "=", "\"Phospho (STY)\"", ")", ":", "dfmsp", "[", "'Modifications'", "]", "=", "np", ".", "array", "(", "[", "modification", "in", "m", "for", "m", "in", "dfmsp", "[", "'Modifications'", "]", ...	38.24	26.32
def integer(description, **kwargs) -> typing.Type: """Create a :class:`~doctor.types.Integer` type. :param description: A description of the type. :param kwargs: Can include any attribute defined in :class:`~doctor.types.Integer` """ kwargs['description'] = description return type('Inte...	[ "def", "integer", "(", "description", ",", "", "", "kwargs", ")", "->", "typing", ".", "Type", ":", "kwargs", "[", "'description'", "]", "=", "description", "return", "type", "(", "'Integer'", ",", "(", "Integer", ",", ")", ",", "kwargs", ")" ]	37.444444	9.333333
def raise_(type_, value=None, traceback=None): # pylint: disable=W0613 """ Does the same as ordinary ``raise`` with arguments do in Python 2. But works in Python 3 (>= 3.3) also! Please checkout README on https://github.com/9seconds/pep3134 to get an idea about possible pitfals. But short story is...	[ "def", "raise_", "(", "type_", ",", "value", "=", "None", ",", "traceback", "=", "None", ")", ":", "# pylint: disable=W0613", "if", "type_", ".", "__traceback__", "is", "not", "traceback", ":", "raise", "type_", ".", "with_traceback", "(", "traceback", ")", ...	40.428571	20.142857
def is_denied(self, role, method, resource): """Check wherther role is denied to access resource :param role: Role to be checked. :param method: Method to be checked. :param resource: View function to be checked. """ return (role, method, resource) in self._denied	[ "def", "is_denied", "(", "self", ",", "role", ",", "method", ",", "resource", ")", ":", "return", "(", "role", ",", "method", ",", "resource", ")", "in", "self", ".", "_denied" ]	38.25	9.5
def main(): ''' main function. ''' args = parse_args() if args.multi_thread: enable_multi_thread() if args.advisor_class_name: # advisor is enabled and starts to run if args.multi_phase: raise AssertionError('multi_phase has not been supported in advisor') ...	[ "def", "main", "(", ")", ":", "args", "=", "parse_args", "(", ")", "if", "args", ".", "multi_thread", ":", "enable_multi_thread", "(", ")", "if", "args", ".", "advisor_class_name", ":", "# advisor is enabled and starts to run", "if", "args", ".", "multi_phase", ...	33.717949	15.384615
def index(): """Basic test view.""" identity = g.identity actions = {} for action in access.actions.values(): actions[action.value] = DynamicPermission(action).allows(identity) if current_user.is_anonymous: return render_template("invenio_access/open.html", ...	[ "def", "index", "(", ")", ":", "identity", "=", "g", ".", "identity", "actions", "=", "{", "}", "for", "action", "in", "access", ".", "actions", ".", "values", "(", ")", ":", "actions", "[", "action", ".", "value", "]", "=", "DynamicPermission", "(",...	36.875	15.875
def normalizeGlyphUnicodes(value): """ Normalizes glyph unicodes. * value must be a ``list``. * value items must normalize as glyph unicodes with :func:`normalizeGlyphUnicode`. * value must not repeat unicode values. * Returned value will be a ``tuple`` of ints. """ if...	[ "def", "normalizeGlyphUnicodes", "(", "value", ")", ":", "if", "not", "isinstance", "(", "value", ",", "(", "tuple", ",", "list", ")", ")", ":", "raise", "TypeError", "(", "\"Glyph unicodes must be a list, not %s.\"", "%", "type", "(", "value", ")", ".", "__...	39.222222	13.222222
def set_extension(self, ext): """ RETURN NEW FILE WITH GIVEN EXTENSION """ path = self._filename.split("/") parts = path[-1].split(".") if len(parts) == 1: parts.append(ext) else: parts[-1] = ext path[-1] = ".".join(parts) ...	[ "def", "set_extension", "(", "self", ",", "ext", ")", ":", "path", "=", "self", ".", "_filename", ".", "split", "(", "\"/\"", ")", "parts", "=", "path", "[", "-", "1", "]", ".", "split", "(", "\".\"", ")", "if", "len", "(", "parts", ")", "==", ...	25.769231	10.384615
def set_soup(self): """Sets soup and strips items""" self.soup = BeautifulSoup(self.feed_content, "html.parser") for item in self.soup.findAll('item'): item.decompose() for image in self.soup.findAll('image'): image.decompose()	[ "def", "set_soup", "(", "self", ")", ":", "self", ".", "soup", "=", "BeautifulSoup", "(", "self", ".", "feed_content", ",", "\"html.parser\"", ")", "for", "item", "in", "self", ".", "soup", ".", "findAll", "(", "'item'", ")", ":", "item", ".", "decompo...	39.571429	12.142857
def parse_workflow_call_body_declarations(self, i): """ Have not seen this used, so expects to return "[]". :param i: :return: """ declaration_array = [] if isinstance(i, wdl_parser.Terminal): declaration_array = [i.source_string] elif isinsta...	[ "def", "parse_workflow_call_body_declarations", "(", "self", ",", "i", ")", ":", "declaration_array", "=", "[", "]", "if", "isinstance", "(", "i", ",", "wdl_parser", ".", "Terminal", ")", ":", "declaration_array", "=", "[", "i", ".", "source_string", "]", "e...	31.666667	15.095238
def FileEntryExistsByPathSpec(self, path_spec): """Determines if a file entry for a path specification exists. Args: path_spec (PathSpec): path specification. Returns: bool: True if the file entry exists. """ location = getattr(path_spec, 'location', None) if (location is None or ...	[ "def", "FileEntryExistsByPathSpec", "(", "self", ",", "path_spec", ")", ":", "location", "=", "getattr", "(", "path_spec", ",", "'location'", ",", "None", ")", "if", "(", "location", "is", "None", "or", "not", "location", ".", "startswith", "(", "self", "....	24.9375	20.71875
def sample(self, n): """Samples data into a Pandas DataFrame. Note that it calls BigQuery so it will incur cost. Args: n: number of sampled counts. Note that the number of counts returned is approximated. Returns: A dataframe containing sampled data. Raises: Exception if n is l...	[ "def", "sample", "(", "self", ",", "n", ")", ":", "total", "=", "bq", ".", "Query", "(", "'select count(*) from %s'", "%", "self", ".", "_get_source", "(", ")", ")", ".", "execute", "(", ")", ".", "result", "(", ")", "[", "0", "]", ".", "values", ...	36	20.26087

def run_aconvasp_command(command, structure): """ Helper function for calling aconvasp with different arguments """ poscar = Poscar(structure) p = subprocess.Popen(command, stdout=subprocess.PIPE, stdin=subprocess.PIPE, stderr=subprocess.PIPE) ou...

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37.6

10.8

def strip_size(self, location='top', num_lines=None): """ Breadth of the strip background in inches Parameters ---------- location : str in ``['top', 'right']`` Location of the strip text num_lines : int Number of text lines """ dp...

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32.111111

17.444444

def onBinaryMessage(self, msg, fromClient): data = bytearray() data.extend(msg) """ self.print_debug("message length: {}".format(len(data))) self.print_debug("message data: {}".format(hexlify(data))) """ try: self.queue.put_nowait(data) except asyncio.QueueFull: pass

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21.461538

19.461538

def _delete_record(self, identifier=None, rtype=None, name=None, content=None): """ Connects to Hetzner account, removes an existing record from the zone and returns a boolean, if deletion was successful or not. Uses identifier or rtype, name & content to lookup over all records of the z...

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56.794872

27.512821

def _check_integrity(self, lons, lats): """ Ensure lons and lats are: - 1D numpy arrays - equal size - within the appropriate range in radians """ lons = np.array(lons).ravel() lats = np.array(lats).ravel() if len(lons.shape) != 1 or len(lats....

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37.3

15

def to_dict(self, delimiter=DEFAULT_DELIMITER, dict_type=collections.OrderedDict): """ Get the dictionary representation of the current parser. :param str delimiter: The delimiter used for nested dictionaries, defaults to ":", optional :param class dict_type: The dictionary type to ...

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45.6

22.6

def genweights(p,q,dt,error=None , n=False): """ ;+ ; GENWEIGTHS : return optimal weigthing coefficients from Powell and Leben 2004<br /> ; translated from Matlab genweigths.m program to IDL<br /><br /> ; ; Reference : Powell, B. S., et R. R. Leben (2004), An Optimal Filter for <br...

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32.130435

23.652174

def get(self, limit=None, page=None): """ get results from the db return -- Iterator() """ has_more = False self.bounds.paginate = True limit_paginate, offset = self.bounds.get(limit, page) self.default_val = [] results = self._query('get') ...

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30.45

14.75

def find_executable(name, names=None, required=True): """Utility function to find an executable in PATH name: program to find. Use given value if absolute path names: list of additional names. For instance >>> find_executable('sed', names=['gsed']) required: If True, then the function raises a...

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32.814815

17.259259

def trigger_streamer(*inputs, **kwargs): """Trigger a streamer based on the index read from input b. Returns: list(IOTileReading) """ streamer_marker = kwargs['mark_streamer'] try: reading = inputs[1].pop() except StreamEmptyError: return [] finally: for in...

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20.652174

19.347826

def metric_wind_dict_to_imperial(d): """ Converts all the wind values in a dict from meters/sec (metric measurement system) to miles/hour (imperial measurement system) . :param d: the dictionary containing metric values :type d: dict :returns: a dict with the same keys as the input dict an...

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31.210526

20.894737

def print_file_results(file_result): """Print the results of validating a file. Args: file_result: A FileValidationResults instance. """ print_results_header(file_result.filepath, file_result.is_valid) for object_result in file_result.object_results: if object_result.warnings: ...

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30.176471

18.117647

def validate(self, model_name, object): """Validate an object against its swagger model""" if model_name not in self.swagger_dict['definitions']: raise ValidationError("Swagger spec has no definition for model %s" % model_name) model_def = self.swagger_dict['definitions'][model_name]...

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61.428571

19.142857

def get_institutes_trend_graph_urls(start, end): """ Get all institute trend graphs. """ graph_list = [] for institute in Institute.objects.all(): urls = get_institute_trend_graph_url(institute, start, end) urls['institute'] = institute graph_list.append(urls) return graph_list

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31.1

17.2

def get_seebeck(self, output='eigs', doping_levels=True): """ Gives the seebeck coefficient (microV/K) in either a full 3x3 tensor form, as 3 eigenvalues, or as the average value (trace/3.0) If doping_levels=True, the results are given at different p and n doping ...

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49.382353

22.441176

def get_tokens(tokens): """Recursively gets tokens from a match list Args: tokens : List of tokens ['(', 'S', '(', 'NP', ')', ')'] Returns: Stack of tokens """ tokens = tokens[1:-1] ret = [] start = 0 stack = 0 for i in range(len(tokens)): if tokens[i] ==...

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26.931034

18.275862

def get_all_last_24h_kline(self): """ 获取所有ticker :param _async: :return: """ params = {} url = u.MARKET_URL + '/market/tickers' def _wrapper(_func): @wraps(_func) def handle(): _func(http_get_request(url, params)) ...

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20.823529

17.882353

def retrieve_profile_extension_records(self, profile_extension, field_list, ids_to_retrieve, query_column='RIID'): """ Responsys.retrieveProfileExtensionRecords call Accepts: InteractObject profile_extension list field_list ...

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40.411765

19.529412

def mimeData( self, items ): """ Returns the mime data for dragging for this instance. :param items | [<QTableWidgetItem>, ..] """ func = self.dataCollector() if ( func ): return func(self, items) return super(XTableWidget, s...

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30

13.636364

def resume(self, mask, filename, port, pos): """Resume a DCC send""" self.connections['send']['masks'][mask][port].offset = pos message = 'DCC ACCEPT %s %d %d' % (filename, port, pos) self.bot.ctcp(mask, message)

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48

11.4

def _str_member_list(self, name): """ Generate a member listing, autosummary:: table where possible, and a table where not. """ out = [] if self[name]: out += ['.. rubric:: %s' % name, ''] prefix = getattr(self, '_name', '') if prefix...

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36.55814

18.372093

def spinner(self, spinner=None): """Setter for spinner property. Parameters ---------- spinner : dict, str Defines the spinner value with frame and interval """ self._spinner = self._get_spinner(spinner) self._frame_index = 0 self._text_index ...

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28.454545

14.454545

def is_valid_chunksize(chunk_size): """Check if size is valid.""" min_csize = current_app.config['FILES_REST_MULTIPART_CHUNKSIZE_MIN'] max_csize = current_app.config['FILES_REST_MULTIPART_CHUNKSIZE_MAX'] return chunk_size >= min_csize and chunk_size <= max_csize

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58

20.6

def _create_singleframe_bvals_bvecs(grouped_dicoms, bval_file, bvec_file, nifti, nifti_file): """ Write the bvals from the sorted dicom files to a bval file """ # create the empty arrays bvals = numpy.zeros([len(grouped_dicoms)], dtype=numpy.int32) bvecs = numpy.zeros([len(grouped_dicoms), 3]) ...

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46.875

23.175

def debug_object(obj, log_level: int = logging.DEBUG) -> None: """ Sends details about a Python to the log, specifically its ``repr()`` representation, and all of its attributes with their name, value, and type. Args: obj: object to debug log_level: log level to use; default is ``loggin...

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40.2

17.266667

def path_lookup(data_obj, xj_path, create_dict_path=False): """Looks up a xj path in the data_obj. :param dict|list data_obj: An object to look into. :param str xj_path: A path to extract data from. :param bool create_dict_path: Create an element if type is specified. :return: A tuple where 0 value...

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41.836735

17.77551

def sample(self): """ This is the core sampling method. Samples a state from a demonstration, in accordance with the configuration. """ # chooses a sampling scheme randomly based on the mixing ratios seed = random.uniform(0, 1) ratio = np.cumsum(self.scheme_ratio...

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33.4375

18.9375

def validate(self, cmd, messages=None): """Returns True if the given Command is valid, False otherwise. Validation error messages are appended to an optional messages array. """ valid = True args = [ arg for arg in cmd.args if arg is not None ] if self.nargs != ...

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36.586207

17.551724

def apply_filters(target, lines): """ Applys filters to the lines of a datasource. This function is used only in integration tests. Filters are applied in an equivalent but more performant way at run time. """ filters = get_filters(target) if filters: for l in lines: if a...

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29.5

17.357143

def add_header(self, name, value): '''Attach an email header to send with the message. :param name: The name of the header value. :param value: The header value. ''' if self.headers is None: self.headers = [] self.headers.append(dict(Name=name, Value=value))

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34.555556

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def is_all_field_none(self): """ :rtype: bool """ if self._uuid is not None: return False if self._avatar is not None: return False if self._public_nick_name is not None: return False if self._display_name is not None: ...

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19.238095

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def generic_visit(self, node): """Called if no explicit visitor function exists for a node.""" for field_name in node._fields: setattr(node, field_name, self.visit(getattr(node, field_name))) return node

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47

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def _hash_file(self, algo): """Get the hash of the given file :param algo: The algorithm to use. :type algo: str :return: The hexdigest of the data. :rtype: str """ # We het the algorithm function. hash_data = getattr(hashlib, algo)() with open...

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25.875

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def _namematcher(regex): """Checks if a target name matches with an input regular expression.""" matcher = re_compile(regex) def match(target): target_name = getattr(target, '__name__', '') result = matcher.match(target_name) return result return match

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25.909091

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def getRing(startAtom, atomSet, lookup, oatoms): """getRing(startAtom, atomSet, lookup, oatoms)->atoms, bonds starting at startAtom do a bfs traversal through the atoms in atomSet and return the smallest ring found returns (), () on failure note: atoms and bonds are not returned in traversal order"...

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29.209677

19.177419

def getIPaddresses(self): """identify the IP addresses where this process client will launch the SC2 client""" if not self.ipAddress: self.ipAddress = ipAddresses.getAll() # update with IP address return self.ipAddress

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50

14

def getPrioritySortkey(self): """Returns the key that will be used to sort the current Analysis Request based on both its priority and creation date. On ASC sorting, the oldest item with highest priority will be displayed. :return: string used for sorting """ priority = s...

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47.444444

10.111111

def current(): """ Returns the current environment manager for the projex system. :return <EnvManager> """ if not EnvManager._current: path = os.environ.get('PROJEX_ENVMGR_PATH') module = os.environ.get('PROJEX_ENVMGR_MODULE') clsn...

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34.648649

19.567568

def mag_roll(RAW_IMU, inclination, declination): '''estimate roll from mag''' m = mag_rotation(RAW_IMU, inclination, declination) (r, p, y) = m.to_euler() return degrees(r)

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36.8

12.4

def harvest(lancet, config_section): """Construct a new Harvest client.""" url, username, password = lancet.get_credentials( config_section, credentials_checker ) project_id_getter = lancet.get_instance_from_config( "timer", "project_id_getter", lancet ) task_id_getter = lancet....

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29.142857

16.047619

def location(self, wave_field, depth=None, index=None): """Create a Location for a specific depth. Parameters ---------- wave_field: str Wave field. See :class:`Location` for possible values. depth: float, optional Depth corresponding to the :class`Locati...

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34.195122

17.536585

def forward(self, # pylint: disable=arguments-differ inputs: torch.Tensor, mask: torch.LongTensor) -> torch.Tensor: """ Parameters ---------- inputs : ``torch.Tensor``, required. A Tensor of shape ``(batch_size, sequence_length, hidden_size)``...

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54.545455

28.727273

def pb(name, data, display_name=None, description=None): """Create a legacy text summary protobuf. Arguments: name: A name for the generated node. Will also serve as a series name in TensorBoard. data: A Python bytestring (of type bytes), or Unicode string. Or a numpy data array of those types....

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34.157895

20.315789

def get_item_balances(self, acc: Account) -> list: """ Returns balances of items of the invoice. :param acc: Account :return: list (AccountEntry, Decimal) in item id order """ items = [] entries = self.get_entries(acc) for item in entries.filter(source_inv...

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43.142857

15.714286

def get_common_payload_template(services=None): """ Get a template dictionary that can be used to create a payload object. TODO: services s/b a list. Specify required fields for each service in list. None means all services. """ available_services = {'citrine', 'materials_commons', '...

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36.696429

12.535714

def readConfig(self, configuration): """Read configuration from dict. Read configuration from a JSON configuration file. :param configuration: configuration to load. :type configuration: dict. """ self.__logger.debug("Reading configuration") self.city = configur...

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38.255814

15.255814

def read_tsv(cls, path, encoding='utf-8'): """Read a gene set database from a tab-delimited text file. Parameters ---------- path: str The path name of the the file. encoding: str The encoding of the text file. Returns ------- Non...

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29.28

16.4

def p_property_assignment(self, p): """property_assignment \ : property_name COLON assignment_expr | GETPROP property_name LPAREN RPAREN LBRACE function_body RBRACE | SETPROP property_name LPAREN property_set_parameter_list RPAREN\ LBRACE function_body R...

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42.941176

17.235294

def create_token( self, registry_address, initial_alloc=10 ** 6, name='raidentester', symbol='RDT', decimals=2, timeout=60, auto_register=True, ): """ Create a proxy for a new HumanStandardToken (ERC20), that is ...

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36.833333

18.190476

def __geomToPointList(self, geom): """ converts a geometry object to a common.Geometry object """ sr = geom.spatialReference wkid = None wkt = None if sr is None: if self._wkid is None and self._wkt is not None: wkt = self._wkt else: ...

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31.9

15.5

def draw_collection(self, ax, collection, force_pathtrans=None, force_offsettrans=None): """Process a matplotlib collection and call renderer.draw_collection""" (transform, transOffset, offsets, paths) = collection._prepare_points() offse...

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47.25

20.454545

def all(cls, client, symbols): """" fetch data for multiple stocks """ params = {"symbol": ",".join(symbols)} request_url = "https://api.robinhood.com/instruments/" data = client.get(request_url, params=params) results = data["results"] while data["next"...

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30

12.642857

def _get_entity_by_class(self, entity_cls): """Fetch Entity record with Entity class details""" entity_qualname = fully_qualified_name(entity_cls) if entity_qualname in self._registry: return self._registry[entity_qualname] else: return self._find_entity_in_record...

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50

15

def get_intrinsic_rewards(self, curr_info, next_info): """ Generates intrinsic reward used for Curiosity-based training. :BrainInfo curr_info: Current BrainInfo. :BrainInfo next_info: Next BrainInfo. :return: Intrinsic rewards for all agents. """ if self.use_curio...

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51.75

23

def custom_decode(encoding): """Overrides encoding when charset declaration or charset determination is a subset of a larger charset. Created because of issues with Chinese websites""" encoding = encoding.lower() alternates = { 'big5': 'big5hkscs', 'gb2312': 'gb18030', ...

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30.933333

13.533333

def _GetPurgeMessage(most_recent_step, most_recent_wall_time, event_step, event_wall_time, num_expired_scalars, num_expired_histos, num_expired_comp_histos, num_expired_images, num_expired_audio): """Return the string message associated with TensorBoard p...

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66.8

24.866667

def load_simple_endpoint(category, name): '''fetches the entry point for a plugin and calls it with the given aux_info''' for ep in pkg_resources.iter_entry_points(category): if ep.name == name: return ep.load() raise KeyError(name)

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37.428571

16.285714

def global_get(self, key): """Return the value for the given key in the ``globals`` table.""" key = self.pack(key) r = self.sql('global_get', key).fetchone() if r is None: raise KeyError("Not set") return self.unpack(r[0])

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38.285714

9.428571

def check_dataset(self, dataset_id, project_id=None): """Check to see if a dataset exists. Parameters ---------- dataset_id : str Dataset unique id project_id: str, optional The project the dataset is in Returns ------- bool ...

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27.529412

17.764706

def get_indexes(self, db_name, tbl_name, max_indexes): """ Parameters: - db_name - tbl_name - max_indexes """ self.send_get_indexes(db_name, tbl_name, max_indexes) return self.recv_get_indexes()

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24.555556

15

def encode(cls, value): """ take a list and turn it into a utf-8 encoded byte-string for redis. :param value: list :return: bytes """ try: coerced = list(value) if coerced == value: return json.dumps(coerced).encode(cls._encoding) ...

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26

18

def get(self, key): """ Fetch entry from database. """ c = self.conn.cursor() for row in c.execute("SELECT key, nonce, key_handle, aead, oath_C, oath_T FROM oath WHERE key = ?", (key,)): return ValOathEntry(row) raise Exception("OATH token for '%s' not found in database (%s)"...

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56.5

27.833333

def run_multiple(self, eventLoops): """run the event loops in the background. Args: eventLoops (list): a list of event loops to run """ self.nruns += len(eventLoops) return self.communicationChannel.put_multiple(eventLoops)

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26.9

19.9

def dataset( node_parser, include=lambda x: True, input_transform=None, target_transform=None): """Convert immediate children of a GroupNode into a torch.data.Dataset Keyword arguments * node_parser=callable that converts a DataNode to a Dataset item * include=lambda x: T...

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38.4

17.3

def wake_lock_size(self): """Get the size of the current wake lock.""" output = self.adb_shell(WAKE_LOCK_SIZE_CMD) if not output: return None return int(output.split("=")[1].strip())

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36.833333

11.5

def extractDates(self, inp): """Extract semantic date information from an input string. In effect, runs both parseDay and parseTime on the input string and merges the results to produce a comprehensive datetime object. Args: inp (str): Input string to be parsed. ...

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31.433333

19.6

def debug(self, s, level=2): """Write a debug message.""" self.write(s, level=level, color='white')

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37.666667

7

def pingback_url(self, server_name, target_url): """ Do a pingback call for the target URL. """ try: server = ServerProxy(server_name) reply = server.pingback.ping(self.entry_url, target_url) except (Error, socket.error): reply = '%s cannot be ...

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35.3

11.3

def cancel_pending_requests(self): '''Cancel all pending requests.''' exception = CancelledError() for _request, event in self._requests.values(): event.result = exception event.set() self._requests.clear()

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36.571429

8.285714

def get_sorted_nts_omit_section(self, hdrgo_prt, hdrgo_sort): """Return a flat list of sections (wo/section names) with GO terms grouped and sorted.""" nts_flat = [] # print("SSSS SorterNts:get_sorted_nts_omit_section(hdrgo_prt={}, hdrgo_sort={})".format( # hdrgo_prt, hdrgo_sort)) ...

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62.0625

25

def FromMicroseconds(self, micros): """Converts microseconds to Duration.""" self._NormalizeDuration( micros // _MICROS_PER_SECOND, (micros % _MICROS_PER_SECOND) * _NANOS_PER_MICROSECOND)

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41.4

8.6

def run_with_werkzeug(self, **options): """Run with werkzeug simple wsgi container.""" threaded = self.threads is not None and (self.threads > 0) self.app.run( host=self.host, port=self.port, debug=self.debug, threaded=threaded, **optio...

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32.3

14.3

def set_attributes(trace): """Automatically set attributes for Google Cloud environment.""" spans = trace.get('spans') for span in spans: if span.get('attributes') is None: span['attributes'] = {} if is_gae_environment(): set_gae_attributes(span) set_common_...

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28.692308

14.846154

def get_member_details(self, member_id, **kwargs): # noqa: E501 """Get member details # noqa: E501 Get your member details (quota and role) # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> t...

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def get_enrollments_for_regid(self, regid, params={}, include_courses=True): """ Return a list of enrollments for the passed user regid. https://canvas.instructure.com/doc/api/enrollments.html#method.enrollments_api.index """ sis_user_id = self....

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def action_rename(self): """ Rename a shortcut """ # get old and new name from args old = self.args['<old>'] new = self.args['<new>'] # select the old shortcut self.db_query(''' SELECT id FROM shortcuts WHERE name=? ''', (old,)) ...

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def _set_protocol_vrrp(self, v, load=False): """ Setter method for protocol_vrrp, mapped from YANG variable /protocol_vrrp (container) If this variable is read-only (config: false) in the source YANG file, then _set_protocol_vrrp is considered as a private method. Backends looking to populate this v...

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def getSpec(cls): """ Overrides :meth:`~nupic.bindings.regions.PyRegion.PyRegion.getSpec`. The parameters collection is constructed based on the parameters specified by the various components (spatialSpec, temporalSpec and otherSpec) """ spec = cls.getBaseSpec() t, o = _getAdditionalSpecs(t...

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def _check_configure_args(configure_args: Dict[str, Any]) -> Dict[str, Any]: """ Check the arguments passed to configure. Raises an exception on failure. On success, returns a dict of configure_args with any necessary mutations. """ # SSID must always be present if not configure_args.get('ssid'...

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def build(cls, seqs: Iterable[int], uid: bool = False) -> 'SequenceSet': """Build a new sequence set that contains the given values using as few groups as possible. Args: seqs: The sequence values to build. uid: True if the sequences refer to message UIDs. """ ...

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def add_args(): """Adds commandline arguments and formatted Help""" parser = argparse.ArgumentParser() parser.add_argument('-host', action='store', dest='host', default='127.0.0.1', help='DEFAULT "127.0.0.1"') parser.add_argument('-port', action='store', dest='port', default='2947', help='DEFAULT 2947'...

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def send(self, request_id, payload): """ Send a request to Kafka Arguments:: request_id (int): can be any int (used only for debug logging...) payload: an encoded kafka packet (see KafkaProtocol) """ log.debug("About to send %d bytes to Kafka, request %d...

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def process_document(self, doc): """ Add your code for processing the document """ raw = doc.select_segments("$.raw_content")[0] extractions = doc.extract(self.inferlink_extractor, raw) doc.store(extractions, "inferlink_extraction") return list()

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def stop(self, force=False): """ Send a terminate request. :param bool force: ignore the remote devices response """ if self._initialized: self.send(C1218TerminateRequest()) data = self.recv() if data == b'\x00' or force: self._initialized = False self._toggle_bit = False return True r...

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def add_node(self, node, attrs = None): """ Add given node to the graph. @attention: While nodes can be of any type, it's strongly recommended to use only numbers and single-line strings as node identifiers if you intend to use write(). @type node: node @param ...

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def set_data(self, data=None, **kwargs): """Set the line data Parameters ---------- data : array-like The data. **kwargs : dict Keywoard arguments to pass to MarkerVisual and LineVisal. """ if data is None: pos = None e...

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def subtract_and_intersect_circle(self, center, radius): ''' Circle subtraction / intersection only supported by 2-gon regions, otherwise a VennRegionException is thrown. In addition, such an exception will be thrown if the circle to be subtracted is completely within the region and forms a "hol...

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def grouper(iterable, n, fillvalue=None): """Group iterable by n elements. >>> for t in grouper('abcdefg', 3, fillvalue='x'): ... print(''.join(t)) abc def gxx """ return list(zip_longest(*[iter(iterable)] * n, fillvalue=fillvalue))

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26

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def enrichment_from_msp(dfmsp, modification="Phospho (STY)"): """ Calculate relative enrichment of peptide modifications from modificationSpecificPeptides.txt. Taking a modifiedsitepeptides ``DataFrame`` returns the relative enrichment of the specified modification in the table. The returned data ...

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def integer(description, **kwargs) -> typing.Type: """Create a :class:`~doctor.types.Integer` type. :param description: A description of the type. :param kwargs: Can include any attribute defined in :class:`~doctor.types.Integer` """ kwargs['description'] = description return type('Inte...

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def raise_(type_, value=None, traceback=None): # pylint: disable=W0613 """ Does the same as ordinary ``raise`` with arguments do in Python 2. But works in Python 3 (>= 3.3) also! Please checkout README on https://github.com/9seconds/pep3134 to get an idea about possible pitfals. But short story is...

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def is_denied(self, role, method, resource): """Check wherther role is denied to access resource :param role: Role to be checked. :param method: Method to be checked. :param resource: View function to be checked. """ return (role, method, resource) in self._denied

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def main(): ''' main function. ''' args = parse_args() if args.multi_thread: enable_multi_thread() if args.advisor_class_name: # advisor is enabled and starts to run if args.multi_phase: raise AssertionError('multi_phase has not been supported in advisor') ...

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def index(): """Basic test view.""" identity = g.identity actions = {} for action in access.actions.values(): actions[action.value] = DynamicPermission(action).allows(identity) if current_user.is_anonymous: return render_template("invenio_access/open.html", ...

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def normalizeGlyphUnicodes(value): """ Normalizes glyph unicodes. * **value** must be a ``list``. * **value** items must normalize as glyph unicodes with :func:`normalizeGlyphUnicode`. * **value** must not repeat unicode values. * Returned value will be a ``tuple`` of ints. """ if...

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def set_extension(self, ext): """ RETURN NEW FILE WITH GIVEN EXTENSION """ path = self._filename.split("/") parts = path[-1].split(".") if len(parts) == 1: parts.append(ext) else: parts[-1] = ext path[-1] = ".".join(parts) ...

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def set_soup(self): """Sets soup and strips items""" self.soup = BeautifulSoup(self.feed_content, "html.parser") for item in self.soup.findAll('item'): item.decompose() for image in self.soup.findAll('image'): image.decompose()

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def parse_workflow_call_body_declarations(self, i): """ Have not seen this used, so expects to return "[]". :param i: :return: """ declaration_array = [] if isinstance(i, wdl_parser.Terminal): declaration_array = [i.source_string] elif isinsta...

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def FileEntryExistsByPathSpec(self, path_spec): """Determines if a file entry for a path specification exists. Args: path_spec (PathSpec): path specification. Returns: bool: True if the file entry exists. """ location = getattr(path_spec, 'location', None) if (location is None or ...

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def sample(self, n): """Samples data into a Pandas DataFrame. Note that it calls BigQuery so it will incur cost. Args: n: number of sampled counts. Note that the number of counts returned is approximated. Returns: A dataframe containing sampled data. Raises: Exception if n is l...

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36

20.26087