kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def requestField(self, field_name, required=False, strict=False): """Request the specified field from the OpenID user @param field_name: the unqualified simple registration field name @type field_name: str @param required: whether the given field should be presented to the ...	[ "def", "requestField", "(", "self", ",", "field_name", ",", "required", "=", "False", ",", "strict", "=", "False", ")", ":", "checkFieldName", "(", "field_name", ")", "if", "strict", ":", "if", "field_name", "in", "self", ".", "required", "or", "field_name...	34.583333	21.361111
def use_active_sequence_rule_enabler_view(self): """Pass through to provider SequenceRuleEnablerLookupSession.use_active_sequence_rule_enabler_view""" self._operable_views['sequence_rule_enabler'] = ACTIVE # self._get_provider_session('sequence_rule_enabler_lookup_session') # To make sure the s...	[ "def", "use_active_sequence_rule_enabler_view", "(", "self", ")", ":", "self", ".", "_operable_views", "[", "'sequence_rule_enabler'", "]", "=", "ACTIVE", "# self._get_provider_session('sequence_rule_enabler_lookup_session') # To make sure the session is tracked", "for", "session", ...	57.777778	21.222222
def encode(self, version, padding, extension, cc, seqnum, marker, pt, ssrc, payload): """Encode the RTP packet with header fields and payload.""" timestamp = int(time()) print("timestamp: " + str(timestamp)) self.header = bytearray(HEADER_SIZE) #-------------- # TO COMPLETE #-------------- # Fill the h...	[ "def", "encode", "(", "self", ",", "version", ",", "padding", ",", "extension", ",", "cc", ",", "seqnum", ",", "marker", ",", "pt", ",", "ssrc", ",", "payload", ")", ":", "timestamp", "=", "int", "(", "time", "(", ")", ")", "print", "(", "\"timesta...	29.875	21.645833
def _iterContours(self, **kwargs): """ This must return an iterator that returns wrapped contours. Subclasses may override this method. """ count = len(self) index = 0 while count: yield self[index] count -= 1 index += 1	[ "def", "_iterContours", "(", "self", ",", "", "", "kwargs", ")", ":", "count", "=", "len", "(", "self", ")", "index", "=", "0", "while", "count", ":", "yield", "self", "[", "index", "]", "count", "-=", "1", "index", "+=", "1" ]	25.166667	15.166667
def _add_gmaf(self, variant_obj, info_dict): """Add the gmaf frequency Args: variant_obj (puzzle.models.Variant) info_dict (dict): A info dictionary """ ##TODO search for max freq in info dict for transcript in variant_obj.transcripts: ...	[ "def", "_add_gmaf", "(", "self", ",", "variant_obj", ",", "info_dict", ")", ":", "##TODO search for max freq in info dict", "for", "transcript", "in", "variant_obj", ".", "transcripts", ":", "gmaf_raw", "=", "transcript", ".", "GMAF", "if", "gmaf_raw", ":", "gmaf"...	34.647059	12.411765
def keys(self, element=None, mode=None): r""" This subclass works exactly like ``keys`` when no arguments are passed, but optionally accepts an ``element`` and/or a ``mode``, which filters the output to only the requested keys. The default behavior is exactly equivalent to the n...	[ "def", "keys", "(", "self", ",", "element", "=", "None", ",", "mode", "=", "None", ")", ":", "if", "mode", "is", "None", ":", "return", "super", "(", ")", ".", "keys", "(", ")", "element", "=", "self", ".", "_parse_element", "(", "element", "=", ...	35.057971	23.710145
def libvlc_log_set_file(p_instance, stream): '''Sets up logging to a file. @param p_instance: libvlc instance. @param stream: FILE pointer opened for writing (the FILE pointer must remain valid until L{libvlc_log_unset}()). @version: LibVLC 2.1.0 or later. ''' f = _Cfunctions.get('libvlc_log_set...	[ "def", "libvlc_log_set_file", "(", "p_instance", ",", "stream", ")", ":", "f", "=", "_Cfunctions", ".", "get", "(", "'libvlc_log_set_file'", ",", "None", ")", "or", "_Cfunction", "(", "'libvlc_log_set_file'", ",", "(", "(", "1", ",", ")", ",", "(", "1", ...	47.1	17.7
def reverse_set(self, subid, ipaddr, entry, params=None): ''' /v1/server/reverse_set_ipv4 POST - account Set a reverse DNS entry for an IPv4 address of a virtual machine. Upon success, DNS changes may take 6-12 hours to become active. Link: https://www.vultr.com/api/#server_reve...	[ "def", "reverse_set", "(", "self", ",", "subid", ",", "ipaddr", ",", "entry", ",", "params", "=", "None", ")", ":", "params", "=", "update_params", "(", "params", ",", "{", "'SUBID'", ":", "subid", ",", "'ip'", ":", "ipaddr", ",", "'entry'", ":", "en...	38.5	21.357143
def _calc_ML(sampler, modelidx=0, e_range=None, e_npoints=100): """Get ML model from blob or compute them from chain and sampler.modelfn """ ML, MLp, MLerr, ML_model = find_ML(sampler, modelidx) if e_range is not None: # prepare bogus data for calculation e_range = validate_array( ...	[ "def", "_calc_ML", "(", "sampler", ",", "modelidx", "=", "0", ",", "e_range", "=", "None", ",", "e_npoints", "=", "100", ")", ":", "ML", ",", "MLp", ",", "MLerr", ",", "ML_model", "=", "find_ML", "(", "sampler", ",", "modelidx", ")", "if", "e_range",...	29.72093	17.651163
def get_file(self, path, dest='', makedirs=False, saltenv='base', gzip=None, cachedir=None): ''' Copies a file from the local files or master depending on implementation ''' rais...	[ "def", "get_file", "(", "self", ",", "path", ",", "dest", "=", "''", ",", "makedirs", "=", "False", ",", "saltenv", "=", "'base'", ",", "gzip", "=", "None", ",", "cachedir", "=", "None", ")", ":", "raise", "NotImplementedError" ]	27.5	16.666667
def get_version(package): """Get version without importing the lib""" with io.open(os.path.join(BASE_DIR, package, '__init__.py'), encoding='utf-8') as fh: return [ l.split('=', 1)[1].strip().strip("'").strip('"') for l in fh.readlines() if '__version__' in l][0]	[ "def", "get_version", "(", "package", ")", ":", "with", "io", ".", "open", "(", "os", ".", "path", ".", "join", "(", "BASE_DIR", ",", "package", ",", "'__init__.py'", ")", ",", "encoding", "=", "'utf-8'", ")", "as", "fh", ":", "return", "[", "l", "...	44.142857	16.571429
def append_utc_time_only(self, tag, timestamp=None, precision=3, header=False): """Append a field with a UTCTimeOnly value. :param tag: Integer or string FIX tag number. :param timestamp: Time value, see below. :param precision: Number of decimal places: 0, ...	[ "def", "append_utc_time_only", "(", "self", ",", "tag", ",", "timestamp", "=", "None", ",", "precision", "=", "3", ",", "header", "=", "False", ")", ":", "return", "self", ".", "_append_utc_datetime", "(", "tag", ",", "\"%H:%M:%S\"", ",", "timestamp", ",",...	48.75	20.958333
def _at_include(self, calculator, rule, scope, block): """ Implements @include, for @mixins """ caller_namespace = rule.namespace caller_calculator = self._make_calculator(caller_namespace) funct, caller_argspec = self._get_funct_def(rule, caller_calculator, block.argumen...	[ "def", "_at_include", "(", "self", ",", "calculator", ",", "rule", ",", "scope", ",", "block", ")", ":", "caller_namespace", "=", "rule", ".", "namespace", "caller_calculator", "=", "self", ".", "_make_calculator", "(", "caller_namespace", ")", "funct", ",", ...	37.164179	18.119403
def random_draw(self, size=None): """Draw random samples of the hyperparameters. The outputs of the two priors are stacked vertically. Parameters ---------- size : None, int or array-like, optional The number/shape of samples to draw. If None, only o...	[ "def", "random_draw", "(", "self", ",", "size", "=", "None", ")", ":", "draw_1", "=", "self", ".", "p1", ".", "random_draw", "(", "size", "=", "size", ")", "draw_2", "=", "self", ".", "p2", ".", "random_draw", "(", "size", "=", "size", ")", "if", ...	34.111111	15.833333
def image(value, width='', height=''): """ Accepts a URL and returns an HTML image tag ready to be displayed. Optionally, you can set the height and width with keyword arguments. """ style = "" if width: style += "width:%s" % width if height: style += "height:%s" % heigh...	[ "def", "image", "(", "value", ",", "width", "=", "''", ",", "height", "=", "''", ")", ":", "style", "=", "\"\"", "if", "width", ":", "style", "+=", "\"width:%s\"", "%", "width", "if", "height", ":", "style", "+=", "\"height:%s\"", "%", "height", "dat...	32.076923	16.384615
def Run(self, unused_arg, ttl=None): """Returns the startup information.""" logging.debug("Sending startup information.") boot_time = rdfvalue.RDFDatetime.FromSecondsSinceEpoch(psutil.boot_time()) response = rdf_client.StartupInfo( boot_time=boot_time, client_info=GetClientInformation()) se...	[ "def", "Run", "(", "self", ",", "unused_arg", ",", "ttl", "=", "None", ")", ":", "logging", ".", "debug", "(", "\"Sending startup information.\"", ")", "boot_time", "=", "rdfvalue", ".", "RDFDatetime", ".", "FromSecondsSinceEpoch", "(", "psutil", ".", "boot_ti...	36.333333	16.066667
def prepare_infrastructure(): """Entry point for preparing the infrastructure in a specific env.""" runner = ForemastRunner() runner.write_configs() runner.create_app() archaius = runner.configs[runner.env]['app']['archaius_enabled'] eureka = runner.configs[runner.env]['app']['eureka_enabled']...	[ "def", "prepare_infrastructure", "(", ")", ":", "runner", "=", "ForemastRunner", "(", ")", "runner", ".", "write_configs", "(", ")", "runner", ".", "create_app", "(", ")", "archaius", "=", "runner", ".", "configs", "[", "runner", ".", "env", "]", "[", "'...	31.882353	17.735294
def standardize_smiles(smiles): """Return a standardized canonical SMILES string given a SMILES string. Note: This is a convenience function for quickly standardizing a single SMILES string. It is more efficient to use the :class:`~molvs.standardize.Standardizer` class directly when working with many molec...	[ "def", "standardize_smiles", "(", "smiles", ")", ":", "# Skip sanitize as standardize does this anyway", "mol", "=", "Chem", ".", "MolFromSmiles", "(", "smiles", ",", "sanitize", "=", "False", ")", "mol", "=", "Standardizer", "(", ")", ".", "standardize", "(", "...	46	23.866667
def yticks(self): """Compute the yticks labels of this grid_stack, used for plotting the y-axis ticks when visualizing an image \ """ return np.linspace(np.amin(self.grid_stack.regular[:, 0]), np.amax(self.grid_stack.regular[:, 0]), 4)	[ "def", "yticks", "(", "self", ")", ":", "return", "np", ".", "linspace", "(", "np", ".", "amin", "(", "self", ".", "grid_stack", ".", "regular", "[", ":", ",", "0", "]", ")", ",", "np", ".", "amax", "(", "self", ".", "grid_stack", ".", "regular",...	64	23
def cell(self, row_idx, col_idx): """ Return \|_Cell\| instance correponding to table cell at row_idx, col_idx intersection, where (0, 0) is the top, left-most cell. """ cell_idx = col_idx + (row_idx * self._column_count) return self._cells[cell_idx]	[ "def", "cell", "(", "self", ",", "row_idx", ",", "col_idx", ")", ":", "cell_idx", "=", "col_idx", "+", "(", "row_idx", "*", "self", ".", "_column_count", ")", "return", "self", ".", "_cells", "[", "cell_idx", "]" ]	42	13.428571
def get_connection(hostname, username, logger, threads=5, use_sudo=None, detect_sudo=True): """ A very simple helper, meant to return a connection that will know about the need to use sudo. """ if username: hostname = "%s@%s" % (username, hostname) try: conn = remoto.Connection( ...	[ "def", "get_connection", "(", "hostname", ",", "username", ",", "logger", ",", "threads", "=", "5", ",", "use_sudo", "=", "None", ",", "detect_sudo", "=", "True", ")", ":", "if", "username", ":", "hostname", "=", "\"%s@%s\"", "%", "(", "username", ",", ...	33.6	17.6
def write_string(self, s, codec): """ Write string encoding it with codec into stream """ for i in range(0, len(s), self.bufsize): chunk = s[i:i + self.bufsize] buf, consumed = codec.encode(chunk) assert consumed == len(chunk) self.write(buf)	[ "def", "write_string", "(", "self", ",", "s", ",", "codec", ")", ":", "for", "i", "in", "range", "(", "0", ",", "len", "(", "s", ")", ",", "self", ".", "bufsize", ")", ":", "chunk", "=", "s", "[", "i", ":", "i", "+", "self", ".", "bufsize", ...	42.857143	5.285714
def get_viewer_names(self, dataobj): """Returns a list of viewer names that are registered that can view `dataobj`. """ res = [] for bnch in self.viewer_db.values(): for vtype in bnch.vtypes: if isinstance(dataobj, vtype): res.appen...	[ "def", "get_viewer_names", "(", "self", ",", "dataobj", ")", ":", "res", "=", "[", "]", "for", "bnch", "in", "self", ".", "viewer_db", ".", "values", "(", ")", ":", "for", "vtype", "in", "bnch", ".", "vtypes", ":", "if", "isinstance", "(", "dataobj",...	34.3	7.8
def removeLayout(self, layout): '''Iteratively remove graphical objects from layout.''' for cnt in reversed(range(layout.count())): item = layout.takeAt(cnt) widget = item.widget() if widget is not None: widget.deleteLater() else: ...	[ "def", "removeLayout", "(", "self", ",", "layout", ")", ":", "for", "cnt", "in", "reversed", "(", "range", "(", "layout", ".", "count", "(", ")", ")", ")", ":", "item", "=", "layout", ".", "takeAt", "(", "cnt", ")", "widget", "=", "item", ".", "w...	41.9	12.1
def recursepath(path, reverse=False): # type: (Text, bool) -> List[Text] """Get intermediate paths from the root to the given path. Arguments: path (str): A PyFilesystem path reverse (bool): Reverses the order of the paths (default `False`). Returns: list: A list of...	[ "def", "recursepath", "(", "path", ",", "reverse", "=", "False", ")", ":", "# type: (Text, bool) -> List[Text]", "if", "path", "in", "\"/\"", ":", "return", "[", "\"/\"", "]", "path", "=", "abspath", "(", "normpath", "(", "path", ")", ")", "+", "\"/\"", ...	20.361111	20.166667
def connect(self): """ Connects the client to the server and returns it. """ key = paramiko.RSAKey(data=base64.b64decode( app.config['SSH_HOST_KEY'] )) client = paramiko.SSHClient() client.get_host_keys().add( app.config['SSH_HOST']...	[ "def", "connect", "(", "self", ")", ":", "key", "=", "paramiko", ".", "RSAKey", "(", "data", "=", "base64", ".", "b64decode", "(", "app", ".", "config", "[", "'SSH_HOST_KEY'", "]", ")", ")", "client", "=", "paramiko", ".", "SSHClient", "(", ")", "cli...	26.85	13.15
def _parse_seq(self, p): """Helper to parse sequence rules. Sequence rules are in the form:: foo : foo_item sep foo \| foo_item foo \| This function builds a deque of the items in-order. If the number of tokens doesn't match, an exception is ...	[ "def", "_parse_seq", "(", "self", ",", "p", ")", ":", "# This basically says:", "#", "# - When you reach the end of the list, construct and return an empty", "# deque.", "# - Otherwise, prepend to start of what you got from the parser.", "#", "# So this ends up constructing an in-order...	29.545455	19.878788
def state(pre, post, attr='state'): """State decorator""" def decorator(method): @six.wraps(method) def inner(self, args, kwargs): setattr(self, attr, pre) result = method(self, args, **kwargs) setattr(self, attr, post) return result r...	[ "def", "state", "(", "pre", ",", "post", ",", "attr", "=", "'state'", ")", ":", "def", "decorator", "(", "method", ")", ":", "@", "six", ".", "wraps", "(", "method", ")", "def", "inner", "(", "self", ",", "", "args", ",", "", "*", "kwargs", "...	28.416667	12.166667
def make_extra_json_fields(args): """ From the parsed command-line arguments, generate a dictionary of additional fields to be inserted into JSON logs (logstash_formatter module) """ extra_json_fields = { 'data_group': _get_data_group(args.query), 'data_type': _get_data_type(args.que...	[ "def", "make_extra_json_fields", "(", "args", ")", ":", "extra_json_fields", "=", "{", "'data_group'", ":", "_get_data_group", "(", "args", ".", "query", ")", ",", "'data_type'", ":", "_get_data_type", "(", "args", ".", "query", ")", ",", "'data_group_data_type'...	41.928571	16.5
def simxAuxiliaryConsoleOpen(clientID, title, maxLines, mode, position, size, textColor, backgroundColor, operationMode): ''' Please have a look at the function description/documentation in the V-REP user manual ''' consoleHandle = ct.c_int() if (sys.version_info[0] == 3) and (type(title) is str): ...	[ "def", "simxAuxiliaryConsoleOpen", "(", "clientID", ",", "title", ",", "maxLines", ",", "mode", ",", "position", ",", "size", ",", "textColor", ",", "backgroundColor", ",", "operationMode", ")", ":", "consoleHandle", "=", "ct", ".", "c_int", "(", ")", "if", ...	38.2	27.4
def _assert_recur_is_tail(node: Node) -> None: # pylint: disable=too-many-branches """Assert that `recur` forms only appear in the tail position of this or child AST nodes. `recur` forms may only appear in `do` nodes (both literal and synthetic `do` nodes) and in either the :then or :else expression o...	[ "def", "_assert_recur_is_tail", "(", "node", ":", "Node", ")", "->", "None", ":", "# pylint: disable=too-many-branches", "if", "node", ".", "op", "==", "NodeOp", ".", "DO", ":", "assert", "isinstance", "(", "node", ",", "Do", ")", "for", "child", "in", "no...	39.829268	9
def URL(base, path, segments=None, defaults=None): """ URL segment handler capable of getting and setting segments by name. The URL is constructed by joining base, path and segments. For each segment a property capable of getting and setting that segment is created dynamically. """ # Make a...	[ "def", "URL", "(", "base", ",", "path", ",", "segments", "=", "None", ",", "defaults", "=", "None", ")", ":", "# Make a copy of the Segments class", "url_class", "=", "type", "(", "Segments", ".", "__name__", ",", "Segments", ".", "__bases__", ",", "dict", ...	45.388889	16.722222
def object_path(collection, id): """Returns path to the backing file of the object with the given ``id`` in the given ``collection``. Note that the ``id`` is made filesystem-safe by "normalizing" its string representation.""" _logger.debug(type(id)) _logger.debug(id) if isinstance(id, dict) ...	[ "def", "object_path", "(", "collection", ",", "id", ")", ":", "_logger", ".", "debug", "(", "type", "(", "id", ")", ")", "_logger", ".", "debug", "(", "id", ")", "if", "isinstance", "(", "id", ",", "dict", ")", "and", "'id'", "in", "id", ":", "id...	40.916667	9.083333
def removeAboveValue(requestContext, seriesList, n): """ Removes data above the given threshold from the series or list of series provided. Values above this threshold are assigned a value of None. """ for s in seriesList: s.name = 'removeAboveValue(%s, %g)' % (s.name, n) s.pathExpre...	[ "def", "removeAboveValue", "(", "requestContext", ",", "seriesList", ",", "n", ")", ":", "for", "s", "in", "seriesList", ":", "s", ".", "name", "=", "'removeAboveValue(%s, %g)'", "%", "(", "s", ".", "name", ",", "n", ")", "s", ".", "pathExpression", "=",...	32.933333	15.6
def next_event(self): """Simulates the queue forward one event. This method behaves identically to a :class:`.LossQueue` if the arriving/departing agent is anything other than a :class:`.ResourceAgent`. The differences are; Arriving: * If the :class:`.ResourceAgent` ha...	[ "def", "next_event", "(", "self", ")", ":", "if", "isinstance", "(", "self", ".", "_arrivals", "[", "0", "]", ",", "ResourceAgent", ")", ":", "if", "self", ".", "_departures", "[", "0", "]", ".", "_time", "<", "self", ".", "_arrivals", "[", "0", "]...	43.69697	24.090909
def factorize(self): """ Factorize s.t. CUR = data Updated Values -------------- .C : updated values for C. .U : updated values for U. .R : updated values for R. """ [prow, pcol] = self.sample_probability() self._rid = self.s...	[ "def", "factorize", "(", "self", ")", ":", "[", "prow", ",", "pcol", "]", "=", "self", ".", "sample_probability", "(", ")", "self", ".", "_rid", "=", "self", ".", "sample", "(", "self", ".", "_rrank", ",", "prow", ")", "self", ".", "_cid", "=", "...	23.888889	17.444444
def bytes2human(n, fmt='%(value).1f %(symbol)s', symbols='customary'): """ Convert n bytes into a human readable string based on format. symbols can be either "customary", "customary_ext", "iec" or "iec_ext", see: http://goo.gl/kTQMs """ n = int(n) if n < 0: raise ValueError("n < 0")...	[ "def", "bytes2human", "(", "n", ",", "fmt", "=", "'%(value).1f %(symbol)s'", ",", "symbols", "=", "'customary'", ")", ":", "n", "=", "int", "(", "n", ")", "if", "n", "<", "0", ":", "raise", "ValueError", "(", "\"n < 0\"", ")", "symbols", "=", "SYMBOLS"...	35.277778	13.5
def emit_event(project_slug, action_slug): """Publish message to action. Rio will trigger all registered webhooks related to this action and trace running process. """ if request.headers.get('Content-Type') == 'application/json': payload = request.get_json() elif request.method == 'POS...	[ "def", "emit_event", "(", "project_slug", ",", "action_slug", ")", ":", "if", "request", ".", "headers", ".", "get", "(", "'Content-Type'", ")", "==", "'application/json'", ":", "payload", "=", "request", ".", "get_json", "(", ")", "elif", "request", ".", ...	31.5	20.3
def login(self, email=None, password=None, user=None): """ Logs the user in and setups the header with the private token :param email: Gitlab user Email :param user: Gitlab username :param password: Gitlab user password :return: True if login successful :raise: H...	[ "def", "login", "(", "self", ",", "email", "=", "None", ",", "password", "=", "None", ",", "user", "=", "None", ")", ":", "if", "user", "is", "not", "None", ":", "data", "=", "{", "'login'", ":", "user", ",", "'password'", ":", "password", "}", "...	35.16	15
def get_status(self, refobj): """Return the status of the given reftrack node See: :data:`Reftrack.LOADED`, :data:`Reftrack.UNLOADED`, :data:`Reftrack.IMPORTED`. :param refobj: the reftrack node to query :type refobj: str :returns: the status of the given reftrack node ...	[ "def", "get_status", "(", "self", ",", "refobj", ")", ":", "reference", "=", "self", ".", "get_reference", "(", "refobj", ")", "return", "Reftrack", ".", "IMPORTED", "if", "not", "reference", "else", "Reftrack", ".", "LOADED", "if", "cmds", ".", "reference...	41.769231	25.307692
def devices(self): """ Return all devices.""" service_root = self.webservices['findme']['url'] return FindMyiPhoneServiceManager( service_root, self.session, self.params )	[ "def", "devices", "(", "self", ")", ":", "service_root", "=", "self", ".", "webservices", "[", "'findme'", "]", "[", "'url'", "]", "return", "FindMyiPhoneServiceManager", "(", "service_root", ",", "self", ".", "session", ",", "self", ".", "params", ")" ]	29	14.75
async def set_async(self, type_name, entity): """Sets an entity asynchronously using the API. Shortcut for using async_call() with the 'Set' method. :param type_name: The type of entity :param entity: The entity to set :raise MyGeotabException: Raises when an exception occurs on the MyG...	[ "async", "def", "set_async", "(", "self", ",", "type_name", ",", "entity", ")", ":", "return", "await", "self", ".", "call_async", "(", "'Set'", ",", "type_name", "=", "type_name", ",", "entity", "=", "entity", ")" ]	52.125	17
def move_file_to_file(old_path, new_path): """Moves file from old location to new one :param old_path: path of file to move :param new_path: new path """ try: os.rename(old_path, new_path) except: old_file = os.path.basename(old_path) ...	[ "def", "move_file_to_file", "(", "old_path", ",", "new_path", ")", ":", "try", ":", "os", ".", "rename", "(", "old_path", ",", "new_path", ")", "except", ":", "old_file", "=", "os", ".", "path", ".", "basename", "(", "old_path", ")", "target_directory", ...	40.555556	15.277778
def chromosomes_from_fai(genome_fai): """ Read a fasta index (fai) file and parse the input chromosomes. :param str genome_fai: Path to the fai file. :return: list of input chromosomes :rtype: list[str] """ chromosomes = [] with open(genome_fai) as fai_file: for line in fai_file...	[ "def", "chromosomes_from_fai", "(", "genome_fai", ")", ":", "chromosomes", "=", "[", "]", "with", "open", "(", "genome_fai", ")", "as", "fai_file", ":", "for", "line", "in", "fai_file", ":", "line", "=", "line", ".", "strip", "(", ")", ".", "split", "(...	29.357143	10.785714
def run(self, positionals=None): '''run the entire helper procedure, including: - start: initialize the helper, collection preferences - record: record any relevant features for the environment / session - interact: interact with the user for additional informatoin ...	[ "def", "run", "(", "self", ",", "positionals", "=", "None", ")", ":", "# Step 0: Each run session is given a fun name", "self", ".", "run_id", "=", "RobotNamer", "(", ")", ".", "generate", "(", ")", "# Step 1: get config steps", "steps", "=", "self", ".", "confi...	43.6875	25.125
def _get_shape_without_batch_dimension(tensor_nest): """Converts Tensor nest to a TensorShape nest, removing batch dimension.""" def _strip_batch_and_convert_to_shape(tensor): return tensor.get_shape()[1:] return nest.map_structure(_strip_batch_and_convert_to_shape, tensor_nest)	[ "def", "_get_shape_without_batch_dimension", "(", "tensor_nest", ")", ":", "def", "_strip_batch_and_convert_to_shape", "(", "tensor", ")", ":", "return", "tensor", ".", "get_shape", "(", ")", "[", "1", ":", "]", "return", "nest", ".", "map_structure", "(", "_str...	57	12.4
def project(self, annotation, timeline): """Project annotation onto timeline segments reference \|__A__\| \|__B__\| \|____C____\| timeline \|---\|---\|---\| \|---\| projection \|_A_\|_A_\|_C_\| \|_B_\| \|_C_\| Parameters ---...	[ "def", "project", "(", "self", ",", "annotation", ",", "timeline", ")", ":", "projection", "=", "annotation", ".", "empty", "(", ")", "timeline_", "=", "annotation", ".", "get_timeline", "(", "copy", "=", "False", ")", "for", "segment_", ",", "segment", ...	30.62963	17.703704
def remove(self, stuff): """Remove variables and constraints. Parameters ---------- stuff : iterable, str, Variable, Constraint Either an iterable containing variables and constraints to be removed from the model or a single variable or contstraint (or their names). ...	[ "def", "remove", "(", "self", ",", "stuff", ")", ":", "if", "self", ".", "_pending_modifications", ".", "toggle", "==", "'add'", ":", "self", ".", "update", "(", ")", "self", ".", "_pending_modifications", ".", "toggle", "=", "'remove'", "if", "isinstance"...	42.487179	22.25641
def eval_script(self, expr): """ Evaluates a piece of Javascript in the context of the current page and returns its value. """ ret = self.conn.issue_command("Evaluate", expr) return json.loads("[%s]" % ret)[0]	[ "def", "eval_script", "(", "self", ",", "expr", ")", ":", "ret", "=", "self", ".", "conn", ".", "issue_command", "(", "\"Evaluate\"", ",", "expr", ")", "return", "json", ".", "loads", "(", "\"[%s]\"", "%", "ret", ")", "[", "0", "]" ]	44.2	5
def random_string_alphanumeric(size): """ Generate a random string of size length consisting of mixed case letters and numbers. This function is not meant for cryptographic purposes. :param int size: The length of the string to return. :return: A string consisting of random characters. :rtype: str """ # requ...	[ "def", "random_string_alphanumeric", "(", "size", ")", ":", "# requirements = random, string", "return", "''", ".", "join", "(", "random", ".", "choice", "(", "string", ".", "ascii_letters", "+", "string", ".", "digits", ")", "for", "x", "in", "range", "(", ...	38.636364	19.545455
def declare_artefact(self, value): # type: (Any) -> ProvEntity """Create data artefact entities for all file objects.""" if value is None: # FIXME: If this can happen in CWL, we'll # need a better way to represent this in PROV return self.document.entity( ...	[ "def", "declare_artefact", "(", "self", ",", "value", ")", ":", "# type: (Any) -> ProvEntity", "if", "value", "is", "None", ":", "# FIXME: If this can happen in CWL, we'll", "# need a better way to represent this in PROV", "return", "self", ".", "document", ".", "entity", ...	45.025862	17.637931
def restore_placeholders(msgid, translation): """Restore placeholders in the translated message.""" placehoders = re.findall(r'(\s)(%(?:\(\w+\))?[sd])(\s)', msgid) return re.sub( r'(\s)(__[\w]+?__)(\s)', lambda matches: '{0}{1}{2}'.format(placehoders[0][0], placehoders[0][1], placehoders...	[ "def", "restore_placeholders", "(", "msgid", ",", "translation", ")", ":", "placehoders", "=", "re", ".", "findall", "(", "r'(\\s)(%(?:\\(\\w+\\))?[sd])(\\s)'", ",", "msgid", ")", "return", "re", ".", "sub", "(", "r'(\\s)(__[\\w]+?__)(\\s)'", ",", "lambda", "m...	49.571429	20.857143
def open_shapefile(shapefile_path, file_geodatabase=None): """Opens a shapefile using either a shapefile path or a file geodatabase """ if file_geodatabase: gdb_driver = ogr.GetDriverByName("OpenFileGDB") ogr_shapefile = gdb_driver.Open(file_geodatabase) ogr_shapefile_lyr = o...	[ "def", "open_shapefile", "(", "shapefile_path", ",", "file_geodatabase", "=", "None", ")", ":", "if", "file_geodatabase", ":", "gdb_driver", "=", "ogr", ".", "GetDriverByName", "(", "\"OpenFileGDB\"", ")", "ogr_shapefile", "=", "gdb_driver", ".", "Open", "(", "f...	41.833333	13.083333
def _var_names(var_names, data): """Handle var_names input across arviz. Parameters ---------- var_names: str, list, or None data : xarray.Dataset Posterior data in an xarray Returns ------- var_name: list or None """ if var_names is not None: if isinstance(var_...	[ "def", "_var_names", "(", "var_names", ",", "data", ")", ":", "if", "var_names", "is", "not", "None", ":", "if", "isinstance", "(", "var_names", ",", "str", ")", ":", "var_names", "=", "[", "var_names", "]", "if", "isinstance", "(", "data", ",", "(", ...	30.636364	19.454545
def hostname_text(self): """Return hostname text and collect if not collected.""" if self._hostname_text is None: self.chain.connection.log("Collecting hostname information") self._hostname_text = self.driver.get_hostname_text() if self._hostname_text: ...	[ "def", "hostname_text", "(", "self", ")", ":", "if", "self", ".", "_hostname_text", "is", "None", ":", "self", ".", "chain", ".", "connection", ".", "log", "(", "\"Collecting hostname information\"", ")", "self", ".", "_hostname_text", "=", "self", ".", "dri...	49	16.8
def get_info(self): """Get the information about the channel groups. Returns ------- dict information about this channel group Notes ----- The items in selectedItems() are ordered based on the user's selection (which appears pretty random). I...	[ "def", "get_info", "(", "self", ")", ":", "selectedItems", "=", "self", ".", "idx_l0", ".", "selectedItems", "(", ")", "selected_chan", "=", "[", "x", ".", "text", "(", ")", "for", "x", "in", "selectedItems", "]", "chan_to_plot", "=", "[", "]", "for", ...	30.117647	18.72549
def try_utf8_decode(value): """Try to decode an object. :param value: :return: """ if not value or not is_string(value): return value elif PYTHON3 and not isinstance(value, bytes): return value elif not PYTHON3 and not isinstance(value, unicode): return value tr...	[ "def", "try_utf8_decode", "(", "value", ")", ":", "if", "not", "value", "or", "not", "is_string", "(", "value", ")", ":", "return", "value", "elif", "PYTHON3", "and", "not", "isinstance", "(", "value", ",", "bytes", ")", ":", "return", "value", "elif", ...	21.210526	19.421053
def flatten_dict(d, prefix='', sep='.'): """In place dict flattening. """ def apply_and_resolve_conflicts(dest, item, prefix): for k, v in flatten_dict(item, prefix=prefix, sep=sep).items(): new_key = k i = 2 while new_key in d: new_key = '{key}{se...	[ "def", "flatten_dict", "(", "d", ",", "prefix", "=", "''", ",", "sep", "=", "'.'", ")", ":", "def", "apply_and_resolve_conflicts", "(", "dest", ",", "item", ",", "prefix", ")", ":", "for", "k", ",", "v", "in", "flatten_dict", "(", "item", ",", "prefi...	38	16.806452
def urlparse(uri): """Parse and decode the parts of a URI.""" scheme, netloc, path, params, query, fragment = parse.urlparse(uri) return ( parse.unquote(scheme), parse.unquote(netloc), parse.unquote(path), parse.unquote(params), parse.unquote(query), parse.unq...	[ "def", "urlparse", "(", "uri", ")", ":", "scheme", ",", "netloc", ",", "path", ",", "params", ",", "query", ",", "fragment", "=", "parse", ".", "urlparse", "(", "uri", ")", "return", "(", "parse", ".", "unquote", "(", "scheme", ")", ",", "parse", "...	30	16.181818
def validate(self, table: pd.DataFrame) -> bool: """Return True if all validation tests pass: False otherwise.""" validations = self._make_validations(table=table) results = [df.all().all() for df in validations] return all(results)	[ "def", "validate", "(", "self", ",", "table", ":", "pd", ".", "DataFrame", ")", "->", "bool", ":", "validations", "=", "self", ".", "_make_validations", "(", "table", "=", "table", ")", "results", "=", "[", "df", ".", "all", "(", ")", ".", "all", "...	37.142857	19.142857
def get_instance(self, instance_id, **kwargs): """Get details about a virtual server instance. :param integer instance_id: the instance ID :returns: A dictionary containing a large amount of information about the specified instance. Example:: # Print out ...	[ "def", "get_instance", "(", "self", ",", "instance_id", ",", "", "", "kwargs", ")", ":", "if", "'mask'", "not", "in", "kwargs", ":", "kwargs", "[", "'mask'", "]", "=", "(", "'id,'", "'globalIdentifier,'", "'fullyQualifiedDomainName,'", "'hostname,'", "'domai...	41.644737	17.434211
def from_string(cls, string): """ Constructor from string parsing. Args: string (str): Input string. """ lines = string.split("\n") timestep = int(lines[1]) natoms = int(lines[3]) box_arr = np.loadtxt(StringIO("\n".join(lines[5:8]))) ...	[ "def", "from_string", "(", "cls", ",", "string", ")", ":", "lines", "=", "string", ".", "split", "(", "\"\\n\"", ")", "timestep", "=", "int", "(", "lines", "[", "1", "]", ")", "natoms", "=", "int", "(", "lines", "[", "3", "]", ")", "box_arr", "="...	35.291667	14.541667
def stylize_comment_block(lines): """Parse comment lines and make subsequent indented lines into a code block block. """ normal, sep, in_code = range(3) state = normal for line in lines: indented = line.startswith(' ') empty_line = line.strip() == '' if state == normal and empty_line: ...	[ "def", "stylize_comment_block", "(", "lines", ")", ":", "normal", ",", "sep", ",", "in_code", "=", "range", "(", "3", ")", "state", "=", "normal", "for", "line", "in", "lines", ":", "indented", "=", "line", ".", "startswith", "(", "' '", ")", "empty...	24.965517	16.965517
def find_portgroup(self, si, dv_switch_path, name): """ Returns the portgroup on the dvSwitch :param name: str :param dv_switch_path: str :param si: service instance """ dv_switch = self.get_folder(si, dv_switch_path) if dv_switch and dv_switch.portgroup: ...	[ "def", "find_portgroup", "(", "self", ",", "si", ",", "dv_switch_path", ",", "name", ")", ":", "dv_switch", "=", "self", ".", "get_folder", "(", "si", ",", "dv_switch_path", ")", "if", "dv_switch", "and", "dv_switch", ".", "portgroup", ":", "for", "port", ...	34	7.692308
def add_to_path(p): """Adds a given path to the PATH.""" if p not in os.environ["PATH"]: os.environ["PATH"] = "{0}{1}{2}".format(p, os.pathsep, os.environ["PATH"])	[ "def", "add_to_path", "(", "p", ")", ":", "if", "p", "not", "in", "os", ".", "environ", "[", "\"PATH\"", "]", ":", "os", ".", "environ", "[", "\"PATH\"", "]", "=", "\"{0}{1}{2}\"", ".", "format", "(", "p", ",", "os", ".", "pathsep", ",", "os", "....	44	17
def write(self, data): """Write data to the file. There is no return value. `data` can be either a string of bytes or a file-like object (implementing :meth:`read`). Due to buffering, the data may not actually be written to the database until the :meth:`close` method is called....	[ "def", "write", "(", "self", ",", "data", ")", ":", "if", "self", ".", "_closed", ":", "raise", "ValueError", "(", "\"TxMongo: cannot write to a closed file.\"", ")", "try", ":", "# file-like", "read", "=", "data", ".", "read", "except", "AttributeError", ":",...	39.596154	19.5
def tokenize_line_comment(text): r"""Process a line comment :param Buffer text: iterator over line, with current position >>> tokenize_line_comment(Buffer('hello %world')) >>> tokenize_line_comment(Buffer('%hello world')) '%hello world' >>> tokenize_line_comment(Buffer('%hello\n world')) '...	[ "def", "tokenize_line_comment", "(", "text", ")", ":", "result", "=", "TokenWithPosition", "(", "''", ",", "text", ".", "position", ")", "if", "text", ".", "peek", "(", ")", "==", "'%'", "and", "text", ".", "peek", "(", "-", "1", ")", "!=", "'\\\\'",...	33.529412	15.705882
def _get_snippet_ctime(self, snip_name): """Returns and remembers (during this DevAssistant invocation) last ctime of given snippet. Calling ctime costs lost of time and some snippets, like common_args, are used widely, so we don't want to call ctime bazillion times on them during one i...	[ "def", "_get_snippet_ctime", "(", "self", ",", "snip_name", ")", ":", "if", "snip_name", "not", "in", "self", ".", "snip_ctimes", ":", "snippet", "=", "yaml_snippet_loader", ".", "YamlSnippetLoader", ".", "get_snippet_by_name", "(", "snip_name", ")", "self", "."...	43.8125	22.875
def coercer(self, dataSets): """ Coerce all of the repetitions and sort them into creations, edits and deletions. @rtype: L{ListChanges} @return: An object describing all of the creations, modifications, and deletions represented by C{dataSets}. """ #...	[ "def", "coercer", "(", "self", ",", "dataSets", ")", ":", "# Xxx - This does a slightly complex (hey, it's like 20 lines, how", "# complex could it really be?) thing to figure out which elements are", "# newly created, which elements were edited, and which elements no", "# longer exist. It mi...	45.627119	21.322034
def decodetx(tx_hex, coin_symbol='btc', api_key=None): ''' Takes a signed transaction hex binary (and coin_symbol) and decodes it to JSON. Does NOT broadcast the transaction to the bitcoin network. Especially useful for testing/debugging and sanity checking ''' assert is_valid_coin_symbol(coin...	[ "def", "decodetx", "(", "tx_hex", ",", "coin_symbol", "=", "'btc'", ",", "api_key", "=", "None", ")", ":", "assert", "is_valid_coin_symbol", "(", "coin_symbol", ")", "assert", "api_key", ",", "'api_key required'", "url", "=", "make_url", "(", "coin_symbol", ",...	29.809524	26.571429
def sendMediaGroup(self, chat_id, media, disable_notification=None, reply_to_message_id=None): """ See: https://core.telegram.org/bots/api#sendmediagroup :type media: array of `InputMedia <https://core.telegram.org/bots/api#inputmedia>`_ objects ...	[ "def", "sendMediaGroup", "(", "self", ",", "chat_id", ",", "media", ",", "disable_notification", "=", "None", ",", "reply_to_message_id", "=", "None", ")", ":", "p", "=", "_strip", "(", "locals", "(", ")", ",", "more", "=", "[", "'media'", "]", ")", "l...	48.592593	24.962963
def create_service( self, task_template, name=None, labels=None, mode=None, update_config=None, networks=None, endpoint_config=None, endpoint_spec=None, rollback_config=None ): """ Create a service. Args: task_template (TaskTemplate): Specific...	[ "def", "create_service", "(", "self", ",", "task_template", ",", "name", "=", "None", ",", "labels", "=", "None", ",", "mode", "=", "None", ",", "update_config", "=", "None", ",", "networks", "=", "None", ",", "endpoint_config", "=", "None", ",", "endpoi...	38.164384	21.506849
def parse_global_args(argv): """Parse all global iotile tool arguments. Any flag based argument at the start of the command line is considered as a global flag and parsed. The first non flag argument starts the commands that are passed to the underlying hierarchical shell. Args: argv (lis...	[ "def", "parse_global_args", "(", "argv", ")", ":", "parser", "=", "create_parser", "(", ")", "args", "=", "parser", ".", "parse_args", "(", "argv", ")", "should_log", "=", "args", ".", "include", "or", "args", ".", "exclude", "or", "(", "args", ".", "v...	32.516129	22.629032
def pad_hex(value, bit_size): """ Pads a hex string up to the given bit_size """ value = remove_0x_prefix(value) return add_0x_prefix(value.zfill(int(bit_size / 4)))	[ "def", "pad_hex", "(", "value", ",", "bit_size", ")", ":", "value", "=", "remove_0x_prefix", "(", "value", ")", "return", "add_0x_prefix", "(", "value", ".", "zfill", "(", "int", "(", "bit_size", "/", "4", ")", ")", ")" ]	30	6.333333
def fill_jacobian_column(self, jaccol, coordinates): """Fill in a column of the Jacobian. Arguments: \| ``jaccol`` -- The column of Jacobian to which the result must be added. \| ``coordinates`` -- A numpy array with Cartesian coordinates, ...	[ "def", "fill_jacobian_column", "(", "self", ",", "jaccol", ",", "coordinates", ")", ":", "q", ",", "g", "=", "self", ".", "icfn", "(", "coordinates", "[", "list", "(", "self", ".", "indexes", ")", "]", ",", "1", ")", "for", "i", ",", "j", "in", "...	40	15.307692
def rsa_eq(key1, key2): """ Only works for RSAPublic Keys :param key1: :param key2: :return: """ pn1 = key1.public_numbers() pn2 = key2.public_numbers() # Check if two RSA keys are in fact the same if pn1 == pn2: return True else: return False	[ "def", "rsa_eq", "(", "key1", ",", "key2", ")", ":", "pn1", "=", "key1", ".", "public_numbers", "(", ")", "pn2", "=", "key2", ".", "public_numbers", "(", ")", "# Check if two RSA keys are in fact the same", "if", "pn1", "==", "pn2", ":", "return", "True", ...	19.333333	17.333333
def create_database(destroy_existing=False): """ Create db and tables if it doesn't exist """ if not os.path.exists(DB_NAME): logger.info('Create database: {0}'.format(DB_NAME)) open(DB_NAME, 'a').close() Show.create_table() Episode.create_table() Setting.create_ta...	[ "def", "create_database", "(", "destroy_existing", "=", "False", ")", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "DB_NAME", ")", ":", "logger", ".", "info", "(", "'Create database: {0}'", ".", "format", "(", "DB_NAME", ")", ")", "open", "("...	39.75	8.125
def _promote(self, request_url): """ Moves the cache item specified by request_url to the front of the 'usage_recency' list """ self._usage_recency.remove(request_url) self._usage_recency.add(request_url)	[ "def", "_promote", "(", "self", ",", "request_url", ")", ":", "self", ".", "_usage_recency", ".", "remove", "(", "request_url", ")", "self", ".", "_usage_recency", ".", "add", "(", "request_url", ")" ]	35.142857	9.142857
def _set_mcast(self, v, load=False): """ Setter method for mcast, mapped from YANG variable /fabric/route/mcast (container) If this variable is read-only (config: false) in the source YANG file, then _set_mcast is considered as a private method. Backends looking to populate this variable should ...	[ "def", "_set_mcast", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ",", "base", ...	64.535714	29.964286
def create(self, num): """ Creates the environment in your subclassed create function include the line below super().build(arg1, arg2, arg2, ...) """ self.log.record_process('enviroment.py', 'Creating ' + str(num) + ' environments - ' + self.name)	[ "def", "create", "(", "self", ",", "num", ")", ":", "self", ".", "log", ".", "record_process", "(", "'enviroment.py'", ",", "'Creating '", "+", "str", "(", "num", ")", "+", "' environments - '", "+", "self", ".", "name", ")" ]	41.285714	17.285714
def _set_trusted_option_if_needed(repostr, trusted): ''' Set trusted option to repo if needed ''' if trusted is True: repostr += ' [trusted=yes]' elif trusted is False: repostr += ' [trusted=no]' return repostr	[ "def", "_set_trusted_option_if_needed", "(", "repostr", ",", "trusted", ")", ":", "if", "trusted", "is", "True", ":", "repostr", "+=", "' [trusted=yes]'", "elif", "trusted", "is", "False", ":", "repostr", "+=", "' [trusted=no]'", "return", "repostr" ]	26.888889	15.777778
def is_changed(self, field, from_db=False): """ Args: field (string): Field name. from_db (bool): Check changes against actual db data Returns: bool: True if given fields value is changed. """ return field in self.changed_fields(from_db=from_d...	[ "def", "is_changed", "(", "self", ",", "field", ",", "from_db", "=", "False", ")", ":", "return", "field", "in", "self", ".", "changed_fields", "(", "from_db", "=", "from_db", ")" ]	31.3	15.5
def _read_message(self): """Reads the contents of a message. Returns: body of message if parsable else None """ line = self._rfile.readline() if not line: return None content_length = self._content_length(line) # Blindly consume all hea...	[ "def", "_read_message", "(", "self", ")", ":", "line", "=", "self", ".", "_rfile", ".", "readline", "(", ")", "if", "not", "line", ":", "return", "None", "content_length", "=", "self", ".", "_content_length", "(", "line", ")", "# Blindly consume all header l...	23	18.545455
def last_datetime(self): """Return the time of the last operation on the bundle as a datetime object""" from datetime import datetime try: return datetime.fromtimestamp(self.state.lasttime) except TypeError: return None	[ "def", "last_datetime", "(", "self", ")", ":", "from", "datetime", "import", "datetime", "try", ":", "return", "datetime", ".", "fromtimestamp", "(", "self", ".", "state", ".", "lasttime", ")", "except", "TypeError", ":", "return", "None" ]	33.625	17.625
def implicitly_wait(self, time_to_wait): """ Sets a sticky timeout to implicitly wait for an element to be found, or a command to complete. This method only needs to be called one time per session. To set the timeout for calls to execute_async_script, see set_script_time...	[ "def", "implicitly_wait", "(", "self", ",", "time_to_wait", ")", ":", "if", "self", ".", "w3c", ":", "self", ".", "execute", "(", "Command", ".", "SET_TIMEOUTS", ",", "{", "'implicit'", ":", "int", "(", "float", "(", "time_to_wait", ")", "*", "1000", "...	34.095238	20.095238
def _send_request(self): """ Sends the request to the backend. """ if isinstance(self._worker, str): classname = self._worker else: classname = '%s.%s' % (self._worker.__module__, self._worker.__name__) self.reque...	[ "def", "_send_request", "(", "self", ")", ":", "if", "isinstance", "(", "self", ".", "_worker", ",", "str", ")", ":", "classname", "=", "self", ".", "_worker", "else", ":", "classname", "=", "'%s.%s'", "%", "(", "self", ".", "_worker", ".", "__module__...	37.083333	9.916667
def dflt_sortby_objgoea(goea_res): """Default sorting of GOEA results.""" return [getattr(goea_res, 'enrichment'), getattr(goea_res, 'namespace'), getattr(goea_res, 'p_uncorrected'), getattr(goea_res, 'depth'), getattr(goea_res, 'GO')]	[ "def", "dflt_sortby_objgoea", "(", "goea_res", ")", ":", "return", "[", "getattr", "(", "goea_res", ",", "'enrichment'", ")", ",", "getattr", "(", "goea_res", ",", "'namespace'", ")", ",", "getattr", "(", "goea_res", ",", "'p_uncorrected'", ")", ",", "getatt...	44.142857	5
def getPrice(self, searches): """ Prices all quest items and returns result Searches the shop wizard x times (x being number given in searches) for each quest item and finds the lowest price for each item. Combines all item prices and sets KitchenQuest.npSpent to the final value...	[ "def", "getPrice", "(", "self", ",", "searches", ")", ":", "totalPrice", "=", "0", "for", "item", "in", "self", ".", "items", ":", "res", "=", "ShopWizard", ".", "priceItem", "(", "self", ".", "usr", ",", "item", ".", "name", ",", "searches", ",", ...	35.928571	22.142857
def _escaped_token_to_subtoken_strings(self, escaped_token): """Converts an escaped token string to a list of subtoken strings. Args: escaped_token: An escaped token as a unicode string. Returns: A list of subtokens as unicode strings. """ # NOTE: This algorithm is greedy; it won't nece...	[ "def", "_escaped_token_to_subtoken_strings", "(", "self", ",", "escaped_token", ")", ":", "# NOTE: This algorithm is greedy; it won't necessarily produce the \"best\"", "# list of subtokens.", "ret", "=", "[", "]", "start", "=", "0", "token_len", "=", "len", "(", "escaped_t...	35.206897	21.310345
def get_store(url_details): """ The state of the mock server will be stored in the resulting object created here """ store = {} for detail in url_details: base_url = detail['url'].strip() # If a url detail has instances, it means that # we want to also create an endpoint...	[ "def", "get_store", "(", "url_details", ")", ":", "store", "=", "{", "}", "for", "detail", "in", "url_details", ":", "base_url", "=", "detail", "[", "'url'", "]", ".", "strip", "(", ")", "# If a url detail has instances, it means that", "# we want to also create a...	50.814516	20.362903
def splitSymbol(self, index): """Give relevant values for computations: (insertSymbol, copySymbol, dist0flag) """ #determine insert and copy upper bits from table row = [0,0,1,1,2,2,1,3,2,3,3][index>>6] col = [0,1,0,1,0,1,2,0,2,1,2][index>>6] #determine inserts an...	[ "def", "splitSymbol", "(", "self", ",", "index", ")", ":", "#determine insert and copy upper bits from table", "row", "=", "[", "0", ",", "0", ",", "1", ",", "1", ",", "2", ",", "2", ",", "1", ",", "3", ",", "2", ",", "3", ",", "3", "]", "[", "in...	39	11.125
def get_stock(self, symbol: str) -> Commodity: """Returns the stock/commodity object for the given symbol""" # Check if we have the exchange name (namespace). if ":" in symbol: # We have a namespace symbol_parts = symbol.split(":") exchange = symbol_parts[0] ...	[ "def", "get_stock", "(", "self", ",", "symbol", ":", "str", ")", "->", "Commodity", ":", "# Check if we have the exchange name (namespace).", "if", "\":\"", "in", "symbol", ":", "# We have a namespace", "symbol_parts", "=", "symbol", ".", "split", "(", "\":\"", ")...	39.333333	17.666667
def copy( self, extractor=None, needs=None, store=None, data_writer=None, persistence=None, extractor_args=None): """ Use self as a template to build a new feature, replacing values in kwargs """ ...	[ "def", "copy", "(", "self", ",", "extractor", "=", "None", ",", "needs", "=", "None", ",", "store", "=", "None", ",", "data_writer", "=", "None", ",", "persistence", "=", "None", ",", "extractor_args", "=", "None", ")", ":", "f", "=", "Feature", "(",...	29.083333	13.083333
def read_data(self, f_start=None, f_stop=None,t_start=None, t_stop=None): """ Read data """ self._setup_selection_range(f_start=f_start, f_stop=f_stop, t_start=t_start, t_stop=t_stop) #check if selection is small enough. if self.isheavy(): logger.warning("Selection ...	[ "def", "read_data", "(", "self", ",", "f_start", "=", "None", ",", "f_stop", "=", "None", ",", "t_start", "=", "None", ",", "t_stop", "=", "None", ")", ":", "self", ".", "_setup_selection_range", "(", "f_start", "=", "f_start", ",", "f_stop", "=", "f_s...	51.166667	37.944444
def n_way_models(mdr_instance, X, y, n=[2], feature_names=None): """Fits a MDR model to all n-way combinations of the features in X. Note that this function performs an exhaustive search through all feature combinations and can be computationally expensive. Parameters ---------- mdr_instance: obje...	[ "def", "n_way_models", "(", "mdr_instance", ",", "X", ",", "y", ",", "n", "=", "[", "2", "]", ",", "feature_names", "=", "None", ")", ":", "if", "feature_names", "is", "None", ":", "feature_names", "=", "list", "(", "range", "(", "X", ".", "shape", ...	44.447368	24.657895
def _create_http_client(): """Create the HTTP client with authentication credentials if required.""" global _http_client defaults = {'user_agent': USER_AGENT} auth_username, auth_password = _credentials if auth_username and auth_password: defaults['auth_username'] = auth_username de...	[ "def", "_create_http_client", "(", ")", ":", "global", "_http_client", "defaults", "=", "{", "'user_agent'", ":", "USER_AGENT", "}", "auth_username", ",", "auth_password", "=", "_credentials", "if", "auth_username", "and", "auth_password", ":", "defaults", "[", "'...	36.692308	12.153846
def transform_expression_columns(df, fn=np.log2, prefix='Intensity '): """ Apply transformation to expression columns. Default is log2 transform to expression columns beginning with Intensity :param df: :param prefix: The column prefix for expression columns :return: """ df = df.copy(...	[ "def", "transform_expression_columns", "(", "df", ",", "fn", "=", "np", ".", "log2", ",", "prefix", "=", "'Intensity '", ")", ":", "df", "=", "df", ".", "copy", "(", ")", "mask", "=", "np", ".", "array", "(", "[", "l", ".", "startswith", "(", "pref...	26.052632	25.210526
def ec2_route_table_tagged_route_table_id(self, lookup, default=None): """ Args: lookup: the tagged route table name, should be unique default: the optional value to return if lookup failed; returns None if not set Returns: the ID of the route table, or default if no match/multiple matches...	[ "def", "ec2_route_table_tagged_route_table_id", "(", "self", ",", "lookup", ",", "default", "=", "None", ")", ":", "route_table", "=", "EFAwsResolver", ".", "__CLIENTS", "[", "\"ec2\"", "]", ".", "describe_route_tables", "(", "Filters", "=", "[", "{", "'Name'", ...	42	21.466667
def reset(self): '''Restores the starting position.''' self.piece_bb = [ BB_VOID, # NONE BB_RANK_C \| BB_RANK_G, # PAWN BB_A1 \| BB_I1 \| BB_A9 \| BB_I9, # LANCE BB_A2 \| BB_A8 \| BB_I2 \| BB_I8, # KNIGHT ...	[ "def", "reset", "(", "self", ")", ":", "self", ".", "piece_bb", "=", "[", "BB_VOID", ",", "# NONE", "BB_RANK_C", "\|", "BB_RANK_G", ",", "# PAWN", "BB_A1", "\|", "BB_I1", "\|", "BB_A9", "\|", "BB_I9", ",", "# LANCE", "BB_A2", "\|", "BB_A8", "\|", "BB_I2", ...	43.871795	20.487179
def middle(self): """ Returns the middle point of the bounding box :return: middle point :rtype: (float, float) """ return (self.min_x + self.max_x) / 2, (self.min_y + self.max_y) / 2	[ "def", "middle", "(", "self", ")", ":", "return", "(", "self", ".", "min_x", "+", "self", ".", "max_x", ")", "/", "2", ",", "(", "self", ".", "min_y", "+", "self", ".", "max_y", ")", "/", "2" ]	31.142857	17

def requestField(self, field_name, required=False, strict=False): """Request the specified field from the OpenID user @param field_name: the unqualified simple registration field name @type field_name: str @param required: whether the given field should be presented to the ...

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def use_active_sequence_rule_enabler_view(self): """Pass through to provider SequenceRuleEnablerLookupSession.use_active_sequence_rule_enabler_view""" self._operable_views['sequence_rule_enabler'] = ACTIVE # self._get_provider_session('sequence_rule_enabler_lookup_session') # To make sure the s...

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57.777778

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def encode(self, version, padding, extension, cc, seqnum, marker, pt, ssrc, payload): """Encode the RTP packet with header fields and payload.""" timestamp = int(time()) print("timestamp: " + str(timestamp)) self.header = bytearray(HEADER_SIZE) #-------------- # TO COMPLETE #-------------- # Fill the h...

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29.875

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def _iterContours(self, **kwargs): """ This must return an iterator that returns wrapped contours. Subclasses may override this method. """ count = len(self) index = 0 while count: yield self[index] count -= 1 index += 1

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25.166667

15.166667

def _add_gmaf(self, variant_obj, info_dict): """Add the gmaf frequency Args: variant_obj (puzzle.models.Variant) info_dict (dict): A info dictionary """ ##TODO search for max freq in info dict for transcript in variant_obj.transcripts: ...

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34.647059

12.411765

def keys(self, element=None, mode=None): r""" This subclass works exactly like ``keys`` when no arguments are passed, but optionally accepts an ``element`` and/or a ``mode``, which filters the output to only the requested keys. The default behavior is exactly equivalent to the n...

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35.057971

23.710145

def libvlc_log_set_file(p_instance, stream): '''Sets up logging to a file. @param p_instance: libvlc instance. @param stream: FILE pointer opened for writing (the FILE pointer must remain valid until L{libvlc_log_unset}()). @version: LibVLC 2.1.0 or later. ''' f = _Cfunctions.get('libvlc_log_set...

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47.1

17.7

def reverse_set(self, subid, ipaddr, entry, params=None): ''' /v1/server/reverse_set_ipv4 POST - account Set a reverse DNS entry for an IPv4 address of a virtual machine. Upon success, DNS changes may take 6-12 hours to become active. Link: https://www.vultr.com/api/#server_reve...

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38.5

21.357143

def _calc_ML(sampler, modelidx=0, e_range=None, e_npoints=100): """Get ML model from blob or compute them from chain and sampler.modelfn """ ML, MLp, MLerr, ML_model = find_ML(sampler, modelidx) if e_range is not None: # prepare bogus data for calculation e_range = validate_array( ...

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29.72093

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def get_file(self, path, dest='', makedirs=False, saltenv='base', gzip=None, cachedir=None): ''' Copies a file from the local files or master depending on implementation ''' rais...

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27.5

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def get_version(package): """Get version without importing the lib""" with io.open(os.path.join(BASE_DIR, package, '__init__.py'), encoding='utf-8') as fh: return [ l.split('=', 1)[1].strip().strip("'").strip('"') for l in fh.readlines() if '__version__' in l][0]

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44.142857

16.571429

def append_utc_time_only(self, tag, timestamp=None, precision=3, header=False): """Append a field with a UTCTimeOnly value. :param tag: Integer or string FIX tag number. :param timestamp: Time value, see below. :param precision: Number of decimal places: 0, ...

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48.75

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def _at_include(self, calculator, rule, scope, block): """ Implements @include, for @mixins """ caller_namespace = rule.namespace caller_calculator = self._make_calculator(caller_namespace) funct, caller_argspec = self._get_funct_def(rule, caller_calculator, block.argumen...

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37.164179

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def random_draw(self, size=None): """Draw random samples of the hyperparameters. The outputs of the two priors are stacked vertically. Parameters ---------- size : None, int or array-like, optional The number/shape of samples to draw. If None, only o...

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34.111111

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def image(value, width='', height=''): """ Accepts a URL and returns an HTML image tag ready to be displayed. Optionally, you can set the height and width with keyword arguments. """ style = "" if width: style += "width:%s" % width if height: style += "height:%s" % heigh...

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32.076923

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def Run(self, unused_arg, ttl=None): """Returns the startup information.""" logging.debug("Sending startup information.") boot_time = rdfvalue.RDFDatetime.FromSecondsSinceEpoch(psutil.boot_time()) response = rdf_client.StartupInfo( boot_time=boot_time, client_info=GetClientInformation()) se...

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36.333333

16.066667

def prepare_infrastructure(): """Entry point for preparing the infrastructure in a specific env.""" runner = ForemastRunner() runner.write_configs() runner.create_app() archaius = runner.configs[runner.env]['app']['archaius_enabled'] eureka = runner.configs[runner.env]['app']['eureka_enabled']...

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31.882353

17.735294

def standardize_smiles(smiles): """Return a standardized canonical SMILES string given a SMILES string. Note: This is a convenience function for quickly standardizing a single SMILES string. It is more efficient to use the :class:`~molvs.standardize.Standardizer` class directly when working with many molec...

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46

23.866667

def yticks(self): """Compute the yticks labels of this grid_stack, used for plotting the y-axis ticks when visualizing an image \ """ return np.linspace(np.amin(self.grid_stack.regular[:, 0]), np.amax(self.grid_stack.regular[:, 0]), 4)

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64

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def cell(self, row_idx, col_idx): """ Return |_Cell| instance correponding to table cell at *row_idx*, *col_idx* intersection, where (0, 0) is the top, left-most cell. """ cell_idx = col_idx + (row_idx * self._column_count) return self._cells[cell_idx]

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42

13.428571

def get_connection(hostname, username, logger, threads=5, use_sudo=None, detect_sudo=True): """ A very simple helper, meant to return a connection that will know about the need to use sudo. """ if username: hostname = "%s@%s" % (username, hostname) try: conn = remoto.Connection( ...

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33.6

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def write_string(self, s, codec): """ Write string encoding it with codec into stream """ for i in range(0, len(s), self.bufsize): chunk = s[i:i + self.bufsize] buf, consumed = codec.encode(chunk) assert consumed == len(chunk) self.write(buf)

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42.857143

5.285714

def get_viewer_names(self, dataobj): """Returns a list of viewer names that are registered that can view `dataobj`. """ res = [] for bnch in self.viewer_db.values(): for vtype in bnch.vtypes: if isinstance(dataobj, vtype): res.appen...

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34.3

7.8

def removeLayout(self, layout): '''Iteratively remove graphical objects from layout.''' for cnt in reversed(range(layout.count())): item = layout.takeAt(cnt) widget = item.widget() if widget is not None: widget.deleteLater() else: ...

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41.9

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def recursepath(path, reverse=False): # type: (Text, bool) -> List[Text] """Get intermediate paths from the root to the given path. Arguments: path (str): A PyFilesystem path reverse (bool): Reverses the order of the paths (default `False`). Returns: list: A list of...

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20.361111

20.166667

def connect(self): """ Connects the client to the server and returns it. """ key = paramiko.RSAKey(data=base64.b64decode( app.config['SSH_HOST_KEY'] )) client = paramiko.SSHClient() client.get_host_keys().add( app.config['SSH_HOST']...

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26.85

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def _parse_seq(self, p): """Helper to parse sequence rules. Sequence rules are in the form:: foo : foo_item sep foo | foo_item foo | This function builds a deque of the items in-order. If the number of tokens doesn't match, an exception is ...

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29.545455

19.878788

def state(pre, post, attr='state'): """State decorator""" def decorator(method): @six.wraps(method) def inner(self, *args, **kwargs): setattr(self, attr, pre) result = method(self, *args, **kwargs) setattr(self, attr, post) return result r...

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28.416667

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def make_extra_json_fields(args): """ From the parsed command-line arguments, generate a dictionary of additional fields to be inserted into JSON logs (logstash_formatter module) """ extra_json_fields = { 'data_group': _get_data_group(args.query), 'data_type': _get_data_type(args.que...

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41.928571

16.5

def simxAuxiliaryConsoleOpen(clientID, title, maxLines, mode, position, size, textColor, backgroundColor, operationMode): ''' Please have a look at the function description/documentation in the V-REP user manual ''' consoleHandle = ct.c_int() if (sys.version_info[0] == 3) and (type(title) is str): ...

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38.2

27.4

def _assert_recur_is_tail(node: Node) -> None: # pylint: disable=too-many-branches """Assert that `recur` forms only appear in the tail position of this or child AST nodes. `recur` forms may only appear in `do` nodes (both literal and synthetic `do` nodes) and in either the :then or :else expression o...

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39.829268

9

def URL(base, path, segments=None, defaults=None): """ URL segment handler capable of getting and setting segments by name. The URL is constructed by joining base, path and segments. For each segment a property capable of getting and setting that segment is created dynamically. """ # Make a...

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45.388889

16.722222

def object_path(collection, id): """Returns path to the backing file of the object with the given ``id`` in the given ``collection``. Note that the ``id`` is made filesystem-safe by "normalizing" its string representation.""" _logger.debug(type(id)) _logger.debug(id) if isinstance(id, dict) ...

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40.916667

9.083333

def removeAboveValue(requestContext, seriesList, n): """ Removes data above the given threshold from the series or list of series provided. Values above this threshold are assigned a value of None. """ for s in seriesList: s.name = 'removeAboveValue(%s, %g)' % (s.name, n) s.pathExpre...

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32.933333

15.6

def next_event(self): """Simulates the queue forward one event. This method behaves identically to a :class:`.LossQueue` if the arriving/departing agent is anything other than a :class:`.ResourceAgent`. The differences are; Arriving: * If the :class:`.ResourceAgent` ha...

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43.69697

24.090909

def factorize(self): """ Factorize s.t. CUR = data Updated Values -------------- .C : updated values for C. .U : updated values for U. .R : updated values for R. """ [prow, pcol] = self.sample_probability() self._rid = self.s...

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23.888889

17.444444

def bytes2human(n, fmt='%(value).1f %(symbol)s', symbols='customary'): """ Convert n bytes into a human readable string based on format. symbols can be either "customary", "customary_ext", "iec" or "iec_ext", see: http://goo.gl/kTQMs """ n = int(n) if n < 0: raise ValueError("n < 0")...

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35.277778

13.5

def emit_event(project_slug, action_slug): """Publish message to action. Rio will trigger all registered webhooks related to this action and trace running process. """ if request.headers.get('Content-Type') == 'application/json': payload = request.get_json() elif request.method == 'POS...

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31.5

20.3

def login(self, email=None, password=None, user=None): """ Logs the user in and setups the header with the private token :param email: Gitlab user Email :param user: Gitlab username :param password: Gitlab user password :return: True if login successful :raise: H...

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35.16

15

def get_status(self, refobj): """Return the status of the given reftrack node See: :data:`Reftrack.LOADED`, :data:`Reftrack.UNLOADED`, :data:`Reftrack.IMPORTED`. :param refobj: the reftrack node to query :type refobj: str :returns: the status of the given reftrack node ...

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41.769231

25.307692

def devices(self): """ Return all devices.""" service_root = self.webservices['findme']['url'] return FindMyiPhoneServiceManager( service_root, self.session, self.params )

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29

14.75

async def set_async(self, type_name, entity): """Sets an entity asynchronously using the API. Shortcut for using async_call() with the 'Set' method. :param type_name: The type of entity :param entity: The entity to set :raise MyGeotabException: Raises when an exception occurs on the MyG...

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52.125

17

def move_file_to_file(old_path, new_path): """Moves file from old location to new one :param old_path: path of file to move :param new_path: new path """ try: os.rename(old_path, new_path) except: old_file = os.path.basename(old_path) ...

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40.555556

15.277778

def chromosomes_from_fai(genome_fai): """ Read a fasta index (fai) file and parse the input chromosomes. :param str genome_fai: Path to the fai file. :return: list of input chromosomes :rtype: list[str] """ chromosomes = [] with open(genome_fai) as fai_file: for line in fai_file...

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29.357143

10.785714

def run(self, positionals=None): '''run the entire helper procedure, including: - start: initialize the helper, collection preferences - record: record any relevant features for the environment / session - interact: interact with the user for additional informatoin ...

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43.6875

25.125

def _get_shape_without_batch_dimension(tensor_nest): """Converts Tensor nest to a TensorShape nest, removing batch dimension.""" def _strip_batch_and_convert_to_shape(tensor): return tensor.get_shape()[1:] return nest.map_structure(_strip_batch_and_convert_to_shape, tensor_nest)

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57

12.4

def project(self, annotation, timeline): """Project annotation onto timeline segments reference |__A__| |__B__| |____C____| timeline |---|---|---| |---| projection |_A_|_A_|_C_| |_B_| |_C_| Parameters ---...

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30.62963

17.703704

def remove(self, stuff): """Remove variables and constraints. Parameters ---------- stuff : iterable, str, Variable, Constraint Either an iterable containing variables and constraints to be removed from the model or a single variable or contstraint (or their names). ...

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42.487179

22.25641

def eval_script(self, expr): """ Evaluates a piece of Javascript in the context of the current page and returns its value. """ ret = self.conn.issue_command("Evaluate", expr) return json.loads("[%s]" % ret)[0]

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44.2

5

def random_string_alphanumeric(size): """ Generate a random string of *size* length consisting of mixed case letters and numbers. This function is not meant for cryptographic purposes. :param int size: The length of the string to return. :return: A string consisting of random characters. :rtype: str """ # requ...

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38.636364

19.545455

def declare_artefact(self, value): # type: (Any) -> ProvEntity """Create data artefact entities for all file objects.""" if value is None: # FIXME: If this can happen in CWL, we'll # need a better way to represent this in PROV return self.document.entity( ...

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45.025862

17.637931

def restore_placeholders(msgid, translation): """Restore placeholders in the translated message.""" placehoders = re.findall(r'(\s*)(%(?:\(\w+\))?[sd])(\s*)', msgid) return re.sub( r'(\s*)(__[\w]+?__)(\s*)', lambda matches: '{0}{1}{2}'.format(placehoders[0][0], placehoders[0][1], placehoders...

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49.571429

20.857143

def open_shapefile(shapefile_path, file_geodatabase=None): """Opens a shapefile using either a shapefile path or a file geodatabase """ if file_geodatabase: gdb_driver = ogr.GetDriverByName("OpenFileGDB") ogr_shapefile = gdb_driver.Open(file_geodatabase) ogr_shapefile_lyr = o...

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41.833333

13.083333

def _var_names(var_names, data): """Handle var_names input across arviz. Parameters ---------- var_names: str, list, or None data : xarray.Dataset Posterior data in an xarray Returns ------- var_name: list or None """ if var_names is not None: if isinstance(var_...

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30.636364

19.454545

def hostname_text(self): """Return hostname text and collect if not collected.""" if self._hostname_text is None: self.chain.connection.log("Collecting hostname information") self._hostname_text = self.driver.get_hostname_text() if self._hostname_text: ...

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49

16.8

def get_info(self): """Get the information about the channel groups. Returns ------- dict information about this channel group Notes ----- The items in selectedItems() are ordered based on the user's selection (which appears pretty random). I...

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30.117647

18.72549

def try_utf8_decode(value): """Try to decode an object. :param value: :return: """ if not value or not is_string(value): return value elif PYTHON3 and not isinstance(value, bytes): return value elif not PYTHON3 and not isinstance(value, unicode): return value tr...

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21.210526

19.421053

def flatten_dict(d, prefix='', sep='.'): """In place dict flattening. """ def apply_and_resolve_conflicts(dest, item, prefix): for k, v in flatten_dict(item, prefix=prefix, sep=sep).items(): new_key = k i = 2 while new_key in d: new_key = '{key}{se...

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38

16.806452

def urlparse(uri): """Parse and decode the parts of a URI.""" scheme, netloc, path, params, query, fragment = parse.urlparse(uri) return ( parse.unquote(scheme), parse.unquote(netloc), parse.unquote(path), parse.unquote(params), parse.unquote(query), parse.unq...

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30

16.181818

def validate(self, table: pd.DataFrame) -> bool: """Return True if all validation tests pass: False otherwise.""" validations = self._make_validations(table=table) results = [df.all().all() for df in validations] return all(results)

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37.142857

19.142857

def get_instance(self, instance_id, **kwargs): """Get details about a virtual server instance. :param integer instance_id: the instance ID :returns: A dictionary containing a large amount of information about the specified instance. Example:: # Print out ...

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41.644737

17.434211

def from_string(cls, string): """ Constructor from string parsing. Args: string (str): Input string. """ lines = string.split("\n") timestep = int(lines[1]) natoms = int(lines[3]) box_arr = np.loadtxt(StringIO("\n".join(lines[5:8]))) ...

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35.291667

14.541667

def stylize_comment_block(lines): """Parse comment lines and make subsequent indented lines into a code block block. """ normal, sep, in_code = range(3) state = normal for line in lines: indented = line.startswith(' ') empty_line = line.strip() == '' if state == normal and empty_line: ...

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24.965517

16.965517

def find_portgroup(self, si, dv_switch_path, name): """ Returns the portgroup on the dvSwitch :param name: str :param dv_switch_path: str :param si: service instance """ dv_switch = self.get_folder(si, dv_switch_path) if dv_switch and dv_switch.portgroup: ...

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34

7.692308

def add_to_path(p): """Adds a given path to the PATH.""" if p not in os.environ["PATH"]: os.environ["PATH"] = "{0}{1}{2}".format(p, os.pathsep, os.environ["PATH"])

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44

17

def write(self, data): """Write data to the file. There is no return value. `data` can be either a string of bytes or a file-like object (implementing :meth:`read`). Due to buffering, the data may not actually be written to the database until the :meth:`close` method is called....

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39.596154

19.5

def tokenize_line_comment(text): r"""Process a line comment :param Buffer text: iterator over line, with current position >>> tokenize_line_comment(Buffer('hello %world')) >>> tokenize_line_comment(Buffer('%hello world')) '%hello world' >>> tokenize_line_comment(Buffer('%hello\n world')) '...

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33.529412

15.705882

def _get_snippet_ctime(self, snip_name): """Returns and remembers (during this DevAssistant invocation) last ctime of given snippet. Calling ctime costs lost of time and some snippets, like common_args, are used widely, so we don't want to call ctime bazillion times on them during one i...

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43.8125

22.875

def coercer(self, dataSets): """ Coerce all of the repetitions and sort them into creations, edits and deletions. @rtype: L{ListChanges} @return: An object describing all of the creations, modifications, and deletions represented by C{dataSets}. """ #...

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45.627119

21.322034

def decodetx(tx_hex, coin_symbol='btc', api_key=None): ''' Takes a signed transaction hex binary (and coin_symbol) and decodes it to JSON. Does NOT broadcast the transaction to the bitcoin network. Especially useful for testing/debugging and sanity checking ''' assert is_valid_coin_symbol(coin...

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29.809524

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def sendMediaGroup(self, chat_id, media, disable_notification=None, reply_to_message_id=None): """ See: https://core.telegram.org/bots/api#sendmediagroup :type media: array of `InputMedia <https://core.telegram.org/bots/api#inputmedia>`_ objects ...

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def create_service( self, task_template, name=None, labels=None, mode=None, update_config=None, networks=None, endpoint_config=None, endpoint_spec=None, rollback_config=None ): """ Create a service. Args: task_template (TaskTemplate): Specific...

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def parse_global_args(argv): """Parse all global iotile tool arguments. Any flag based argument at the start of the command line is considered as a global flag and parsed. The first non flag argument starts the commands that are passed to the underlying hierarchical shell. Args: argv (lis...

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def pad_hex(value, bit_size): """ Pads a hex string up to the given bit_size """ value = remove_0x_prefix(value) return add_0x_prefix(value.zfill(int(bit_size / 4)))

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def fill_jacobian_column(self, jaccol, coordinates): """Fill in a column of the Jacobian. Arguments: | ``jaccol`` -- The column of Jacobian to which the result must be added. | ``coordinates`` -- A numpy array with Cartesian coordinates, ...

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def rsa_eq(key1, key2): """ Only works for RSAPublic Keys :param key1: :param key2: :return: """ pn1 = key1.public_numbers() pn2 = key2.public_numbers() # Check if two RSA keys are in fact the same if pn1 == pn2: return True else: return False

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def create_database(destroy_existing=False): """ Create db and tables if it doesn't exist """ if not os.path.exists(DB_NAME): logger.info('Create database: {0}'.format(DB_NAME)) open(DB_NAME, 'a').close() Show.create_table() Episode.create_table() Setting.create_ta...

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def _promote(self, request_url): """ Moves the cache item specified by request_url to the front of the 'usage_recency' list """ self._usage_recency.remove(request_url) self._usage_recency.add(request_url)

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def _set_mcast(self, v, load=False): """ Setter method for mcast, mapped from YANG variable /fabric/route/mcast (container) If this variable is read-only (config: false) in the source YANG file, then _set_mcast is considered as a private method. Backends looking to populate this variable should ...

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def create(self, num): """ Creates the environment in your subclassed create function include the line below super().build(arg1, arg2, arg2, ...) """ self.log.record_process('enviroment.py', 'Creating ' + str(num) + ' environments - ' + self.name)

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def _set_trusted_option_if_needed(repostr, trusted): ''' Set trusted option to repo if needed ''' if trusted is True: repostr += ' [trusted=yes]' elif trusted is False: repostr += ' [trusted=no]' return repostr

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def is_changed(self, field, from_db=False): """ Args: field (string): Field name. from_db (bool): Check changes against actual db data Returns: bool: True if given fields value is changed. """ return field in self.changed_fields(from_db=from_d...

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def _read_message(self): """Reads the contents of a message. Returns: body of message if parsable else None """ line = self._rfile.readline() if not line: return None content_length = self._content_length(line) # Blindly consume all hea...

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def last_datetime(self): """Return the time of the last operation on the bundle as a datetime object""" from datetime import datetime try: return datetime.fromtimestamp(self.state.lasttime) except TypeError: return None

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def implicitly_wait(self, time_to_wait): """ Sets a sticky timeout to implicitly wait for an element to be found, or a command to complete. This method only needs to be called one time per session. To set the timeout for calls to execute_async_script, see set_script_time...

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def _send_request(self): """ Sends the request to the backend. """ if isinstance(self._worker, str): classname = self._worker else: classname = '%s.%s' % (self._worker.__module__, self._worker.__name__) self.reque...

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def dflt_sortby_objgoea(goea_res): """Default sorting of GOEA results.""" return [getattr(goea_res, 'enrichment'), getattr(goea_res, 'namespace'), getattr(goea_res, 'p_uncorrected'), getattr(goea_res, 'depth'), getattr(goea_res, 'GO')]

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def getPrice(self, searches): """ Prices all quest items and returns result Searches the shop wizard x times (x being number given in searches) for each quest item and finds the lowest price for each item. Combines all item prices and sets KitchenQuest.npSpent to the final value...

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def _escaped_token_to_subtoken_strings(self, escaped_token): """Converts an escaped token string to a list of subtoken strings. Args: escaped_token: An escaped token as a unicode string. Returns: A list of subtokens as unicode strings. """ # NOTE: This algorithm is greedy; it won't nece...

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def get_store(url_details): """ The state of the mock server will be stored in the resulting object created here """ store = {} for detail in url_details: base_url = detail['url'].strip() # If a url detail has instances, it means that # we want to also create an endpoint...

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def splitSymbol(self, index): """Give relevant values for computations: (insertSymbol, copySymbol, dist0flag) """ #determine insert and copy upper bits from table row = [0,0,1,1,2,2,1,3,2,3,3][index>>6] col = [0,1,0,1,0,1,2,0,2,1,2][index>>6] #determine inserts an...

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def get_stock(self, symbol: str) -> Commodity: """Returns the stock/commodity object for the given symbol""" # Check if we have the exchange name (namespace). if ":" in symbol: # We have a namespace symbol_parts = symbol.split(":") exchange = symbol_parts[0] ...

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def copy( self, extractor=None, needs=None, store=None, data_writer=None, persistence=None, extractor_args=None): """ Use self as a template to build a new feature, replacing values in kwargs """ ...

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def read_data(self, f_start=None, f_stop=None,t_start=None, t_stop=None): """ Read data """ self._setup_selection_range(f_start=f_start, f_stop=f_stop, t_start=t_start, t_stop=t_stop) #check if selection is small enough. if self.isheavy(): logger.warning("Selection ...

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def n_way_models(mdr_instance, X, y, n=[2], feature_names=None): """Fits a MDR model to all n-way combinations of the features in X. Note that this function performs an exhaustive search through all feature combinations and can be computationally expensive. Parameters ---------- mdr_instance: obje...

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def _create_http_client(): """Create the HTTP client with authentication credentials if required.""" global _http_client defaults = {'user_agent': USER_AGENT} auth_username, auth_password = _credentials if auth_username and auth_password: defaults['auth_username'] = auth_username de...

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def transform_expression_columns(df, fn=np.log2, prefix='Intensity '): """ Apply transformation to expression columns. Default is log2 transform to expression columns beginning with Intensity :param df: :param prefix: The column prefix for expression columns :return: """ df = df.copy(...

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def ec2_route_table_tagged_route_table_id(self, lookup, default=None): """ Args: lookup: the tagged route table name, should be unique default: the optional value to return if lookup failed; returns None if not set Returns: the ID of the route table, or default if no match/multiple matches...

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def reset(self): '''Restores the starting position.''' self.piece_bb = [ BB_VOID, # NONE BB_RANK_C | BB_RANK_G, # PAWN BB_A1 | BB_I1 | BB_A9 | BB_I9, # LANCE BB_A2 | BB_A8 | BB_I2 | BB_I8, # KNIGHT ...

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def middle(self): """ Returns the middle point of the bounding box :return: middle point :rtype: (float, float) """ return (self.min_x + self.max_x) / 2, (self.min_y + self.max_y) / 2

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