kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def _get_mcmc_method_kernel_data_elements(self): """Get the mcmc method kernel data elements. Used by :meth:`_get_mcmc_method_kernel_data`.""" return {'proposal_stds': Array(self._proposal_stds, 'mot_float_type', mode='rw', ensure_zero_copy=True), 'x_tmp': LocalMemory('mot_float_type', n...	[ "def", "_get_mcmc_method_kernel_data_elements", "(", "self", ")", ":", "return", "{", "'proposal_stds'", ":", "Array", "(", "self", ".", "_proposal_stds", ",", "'mot_float_type'", ",", "mode", "=", "'rw'", ",", "ensure_zero_copy", "=", "True", ")", ",", "'x_tmp'...	87	31.75
def get_file_contents(filename: str = None, blob: bytes = None) -> bytes: """ Returns the binary contents of a file, or of a BLOB. """ if not filename and not blob: raise ValueError("no filename and no blob") if filename and blob: raise ValueError("specify either filename or blob") ...	[ "def", "get_file_contents", "(", "filename", ":", "str", "=", "None", ",", "blob", ":", "bytes", "=", "None", ")", "->", "bytes", ":", "if", "not", "filename", "and", "not", "blob", ":", "raise", "ValueError", "(", "\"no filename and no blob\"", ")", "if",...	33.333333	14.333333
def run(input=sys.stdin, output=sys.stdout): r"""CouchDB view function handler implementation for Python. :param input: the readable file-like object to read input from :param output: the writable file-like object to write output to """ functions = [] environments = dict() def _writejson(o...	[ "def", "run", "(", "input", "=", "sys", ".", "stdin", ",", "output", "=", "sys", ".", "stdout", ")", ":", "functions", "=", "[", "]", "environments", "=", "dict", "(", ")", "def", "_writejson", "(", "obj", ")", ":", "obj", "=", "json", ".", "enco...	31.405941	17.420792
def add_molecule(self, mol, bond=None, base=None, target=None): """connect atom group (for SMILES parser) May requires recalculation of 2D coordinate for drawing Args: mol: graphmol.Compound() the original object will be copied. bond: Bond object to be c...	[ "def", "add_molecule", "(", "self", ",", "mol", ",", "bond", "=", "None", ",", "base", "=", "None", ",", "target", "=", "None", ")", ":", "ai", "=", "self", ".", "available_idx", "(", ")", "mapping", "=", "{", "n", ":", "n", "+", "ai", "-", "1"...	40.636364	18.454545
async def pick_up_tip(self, mount, tip_length: float, presses: int = None, increment: float = None): """ Pick up tip from current location. If ``presses`` or ``increment`` is not specified (o...	[ "async", "def", "pick_up_tip", "(", "self", ",", "mount", ",", "tip_length", ":", "float", ",", "presses", ":", "int", "=", "None", ",", "increment", ":", "float", "=", "None", ")", ":", "instr", "=", "self", ".", "_attached_instruments", "[", "mount", ...	42.033898	15.389831
def add_signaling_arguments(parser): """ Add signaling method arguments to an argparse.ArgumentParser. """ parser.add_argument('--signaling', '-s', choices=[ 'copy-and-paste', 'tcp-socket', 'unix-socket']) parser.add_argument('--signaling-host', default='127.0.0.1', h...	[ "def", "add_signaling_arguments", "(", "parser", ")", ":", "parser", ".", "add_argument", "(", "'--signaling'", ",", "'-s'", ",", "choices", "=", "[", "'copy-and-paste'", ",", "'tcp-socket'", ",", "'unix-socket'", "]", ")", "parser", ".", "add_argument", "(", ...	51.083333	17.25
def trunk_origin_elevations(nrn, neurite_type=NeuriteType.all): '''Get a list of all the trunk origin elevations of a neuron or population The elevation is defined as the angle between x-axis and the vector defined by (initial tree point - soma center) on the x-y half-plane. The range of the eleva...	[ "def", "trunk_origin_elevations", "(", "nrn", ",", "neurite_type", "=", "NeuriteType", ".", "all", ")", ":", "neurite_filter", "=", "is_type", "(", "neurite_type", ")", "nrns", "=", "neuron_population", "(", "nrn", ")", "def", "_elevation", "(", "section", ","...	38.875	22.125
def get_methods_names(public_properties): """ Generates the names of the fields where to inject the getter and setter methods :param public_properties: If True, returns the names of public property accessors, else of hidden property ones :return...	[ "def", "get_methods_names", "(", "public_properties", ")", ":", "if", "public_properties", ":", "prefix", "=", "ipopo_constants", ".", "IPOPO_PROPERTY_PREFIX", "else", ":", "prefix", "=", "ipopo_constants", ".", "IPOPO_HIDDEN_PROPERTY_PREFIX", "return", "(", "\"{0}{1}\"...	38.5	23.722222
def add_header(self, header): """Add a custom HTTP header to the client's request headers""" if type(header) is dict: self._headers.update(header) else: raise ValueError( "Dictionary expected, got '%s' instead" % type(header) )	[ "def", "add_header", "(", "self", ",", "header", ")", ":", "if", "type", "(", "header", ")", "is", "dict", ":", "self", ".", "_headers", ".", "update", "(", "header", ")", "else", ":", "raise", "ValueError", "(", "\"Dictionary expected, got '%s' instead\"", ...	37	14.25
def assign(self, dst, req, src): """Helper function for assigning into dst depending on requirements.""" if req == 'null': return elif req in ('write', 'inplace'): dst[:] = src elif req == 'add': dst[:] += src	[ "def", "assign", "(", "self", ",", "dst", ",", "req", ",", "src", ")", ":", "if", "req", "==", "'null'", ":", "return", "elif", "req", "in", "(", "'write'", ",", "'inplace'", ")", ":", "dst", "[", ":", "]", "=", "src", "elif", "req", "==", "'ad...	33.75	11.375
def get_staking_leaderboard(self, round_num=0, tournament=1): """Retrieves the leaderboard of the staking competition for the given round. Args: round_num (int, optional): The round you are interested in, defaults to current round. tournament (int, option...	[ "def", "get_staking_leaderboard", "(", "self", ",", "round_num", "=", "0", ",", "tournament", "=", "1", ")", ":", "msg", "=", "\"getting stakes for tournament {} round {}\"", "self", ".", "logger", ".", "info", "(", "msg", ".", "format", "(", "tournament", ","...	38.240964	16.53012
def LifoQueue(self, name, initial=None, maxsize=None): """The LIFO queue datatype. :param name: The name of the queue. :keyword initial: Initial items in the queue. See :class:`redish.types.LifoQueue`. """ return types.LifoQueue(name, self.api, ...	[ "def", "LifoQueue", "(", "self", ",", "name", ",", "initial", "=", "None", ",", "maxsize", "=", "None", ")", ":", "return", "types", ".", "LifoQueue", "(", "name", ",", "self", ".", "api", ",", "initial", "=", "initial", ",", "maxsize", "=", "maxsize...	31.818182	16.727273
def _get_defaults(func): """Internal helper to extract the default arguments, by name.""" try: code = func.__code__ except AttributeError: # Some built-in functions don't have __code__, __defaults__, etc. return {} pos_count = code.co_argcount arg_names = code.co_varnames ...	[ "def", "_get_defaults", "(", "func", ")", ":", "try", ":", "code", "=", "func", ".", "__code__", "except", "AttributeError", ":", "# Some built-in functions don't have __code__, __defaults__, etc.", "return", "{", "}", "pos_count", "=", "code", ".", "co_argcount", "...	35.5	13.166667
def averageConvergencePoint(self, prefix, minOverlap, maxOverlap, settlingTime=1, firstStat=0, lastStat=None): """ For each object, compute the convergence time - the first point when all L2 columns have converged. Return the average convergence time and accuracy across a...	[ "def", "averageConvergencePoint", "(", "self", ",", "prefix", ",", "minOverlap", ",", "maxOverlap", ",", "settlingTime", "=", "1", ",", "firstStat", "=", "0", ",", "lastStat", "=", "None", ")", ":", "convergenceSum", "=", "0.0", "numCorrect", "=", "0.0", "...	37.106383	24.382979
def autoactivate(client, endpoint_id, if_expires_in=None): """ Attempts to auto-activate the given endpoint with the given client If auto-activation fails, parses the returned activation requirements to determine which methods of activation are supported, then tells the user to use 'globus endpoint ...	[ "def", "autoactivate", "(", "client", ",", "endpoint_id", ",", "if_expires_in", "=", "None", ")", ":", "kwargs", "=", "{", "}", "if", "if_expires_in", "is", "not", "None", ":", "kwargs", "[", "\"if_expires_in\"", "]", "=", "if_expires_in", "res", "=", "cli...	35.52	21.92
def _timing_char(message): """ >>> message = 'MORSE CODE' >>> _timing_char(message) 'M------ O---------- R------ S---- E C---------- O---------- D------ E' """ s = '' inter_symb = ' ' inter_char = ' ' * 3 inter_word = inter_symb * 7 for i, word in enumerate(_s...	[ "def", "_timing_char", "(", "message", ")", ":", "s", "=", "''", "inter_symb", "=", "' '", "inter_char", "=", "' '", "", "3", "inter_word", "=", "inter_symb", "", "7", "for", "i", ",", "word", "in", "enumerate", "(", "_split_message", "(", "message", ...	29.944444	16.277778
def switch_off(self, *args): """ Sets the state of the switch to False if off_check() returns True, given the arguments provided in kwargs. :param kwargs: variable length dictionary of key-pair arguments :return: Boolean. Returns True if the operation is successful """ ...	[ "def", "switch_off", "(", "self", ",", "", "args", ")", ":", "if", "self", ".", "off_check", "(", "", "args", ")", ":", "return", "self", ".", "_switch", ".", "switch", "(", "False", ")", "else", ":", "return", "False" ]	35.5	17.333333
def _metadata_is_invalid(cls, fact): """Determines if the fact is not well formed. """ return any(isinstance(token, URIRef) and ' ' in token for token in fact)	[ "def", "_metadata_is_invalid", "(", "cls", ",", "fact", ")", ":", "return", "any", "(", "isinstance", "(", "token", ",", "URIRef", ")", "and", "' '", "in", "token", "for", "token", "in", "fact", ")" ]	33	11.333333
def clone(self) -> 'ImageBBox': "Mimic the behavior of torch.clone for `Image` objects." flow = FlowField(self.size, self.flow.flow.clone()) return self.__class__(flow, scale=False, y_first=False, labels=self.labels, pad_idx=self.pad_idx)	[ "def", "clone", "(", "self", ")", "->", "'ImageBBox'", ":", "flow", "=", "FlowField", "(", "self", ".", "size", ",", "self", ".", "flow", ".", "flow", ".", "clone", "(", ")", ")", "return", "self", ".", "__class__", "(", "flow", ",", "scale", "=", ...	64.75	29.25
def verify_tree_consistency(self, old_tree_size: int, new_tree_size: int, old_root: bytes, new_root: bytes, proof: Sequence[bytes]): """Verify the consistency between two root hashes. old_tree_size must be <= new_tree_size. Args: ...	[ "def", "verify_tree_consistency", "(", "self", ",", "old_tree_size", ":", "int", ",", "new_tree_size", ":", "int", ",", "old_root", ":", "bytes", ",", "new_root", ":", "bytes", ",", "proof", ":", "Sequence", "[", "bytes", "]", ")", ":", "old_size", "=", ...	42.778626	22.480916
def visit_desc(self): """ Builds a citation boilerplate by visiting all workflows appending their ``__desc__`` field """ desc = [] if self.__desc__: desc += [self.__desc__] for node in pe.utils.topological_sort(self._graph)[0]: if isinsta...	[ "def", "visit_desc", "(", "self", ")", ":", "desc", "=", "[", "]", "if", "self", ".", "__desc__", ":", "desc", "+=", "[", "self", ".", "__desc__", "]", "for", "node", "in", "pe", ".", "utils", ".", "topological_sort", "(", "self", ".", "_graph", ")...	27.9	15.4
def space(self): """Combined Hilbert space of all matrix elements.""" arg_spaces = [o.space for o in self.matrix.ravel() if hasattr(o, 'space')] if len(arg_spaces) == 0: return TrivialSpace else: return ProductSpace.create(*arg_spaces)	[ "def", "space", "(", "self", ")", ":", "arg_spaces", "=", "[", "o", ".", "space", "for", "o", "in", "self", ".", "matrix", ".", "ravel", "(", ")", "if", "hasattr", "(", "o", ",", "'space'", ")", "]", "if", "len", "(", "arg_spaces", ")", "==", "...	38.25	12.75
def load_remote_settings(self, remote_bucket, remote_file): """ Attempt to read a file from s3 containing a flat json object. Adds each key->value pair as environment variables. Helpful for keeping sensitiZve or stage-specific configuration variables in s3 instead of version cont...	[ "def", "load_remote_settings", "(", "self", ",", "remote_bucket", ",", "remote_file", ")", ":", "if", "not", "self", ".", "session", ":", "boto_session", "=", "boto3", ".", "Session", "(", ")", "else", ":", "boto_session", "=", "self", ".", "session", "s3"...	39.170213	19.723404
def skips(self, user): """ Skips for user. Zendesk API `Reference <https://developer.zendesk.com/rest_api/docs/core/ticket_skips>`__. """ return self._get(self._build_url(self.endpoint.skips(id=user)))	[ "def", "skips", "(", "self", ",", "user", ")", ":", "return", "self", ".", "_get", "(", "self", ".", "_build_url", "(", "self", ".", "endpoint", ".", "skips", "(", "id", "=", "user", ")", ")", ")" ]	45.8	24.6
def create_alert(self, name=None, description=None, severity=None, for_atleast_s=None, condition=None, segmentby=[], segment_condition='ANY', user_filter='', notify=None, enabled=True, annotations={}, alert_obj=None): '''Description Create a threshold-ba...	[ "def", "create_alert", "(", "self", ",", "name", "=", "None", ",", "description", "=", "None", ",", "severity", "=", "None", ",", "for_atleast_s", "=", "None", ",", "condition", "=", "None", ",", "segmentby", "=", "[", "]", ",", "segment_condition", "=",...	63.649351	44.298701
def _build(credentials, api_version, http_client=None): """Build the client object.""" if not http_client: http_client = httplib2.Http() authorised_client = credentials.authorize(http_client) return build("analytics", api_version, http=authorised_client)	[ "def", "_build", "(", "credentials", ",", "api_version", ",", "http_client", "=", "None", ")", ":", "if", "not", "http_client", ":", "http_client", "=", "httplib2", ".", "Http", "(", ")", "authorised_client", "=", "credentials", ".", "authorize", "(", "http_...	34.125	19.875
def cy_bispev(tx, ty, c, kx, ky, x, y): '''Possible optimization: Do not evaluate derivatives, ever. ''' nx = len(tx) ny = len(ty) mx = len(x) my = len(y) kx1 = kx + 1 ky1 = ky + 1 nkx1 = nx - kx1 nky1 = ny - ky1 wx = [[0.0]kx1]mx wy = [[0.0]ky1]my lx = [0]...	[ "def", "cy_bispev", "(", "tx", ",", "ty", ",", "c", ",", "kx", ",", "ky", ",", "x", ",", "y", ")", ":", "nx", "=", "len", "(", "tx", ")", "ny", "=", "len", "(", "ty", ")", "mx", "=", "len", "(", "x", ")", "my", "=", "len", "(", "y", "...	22.131579	20.868421
def _result(self): # type: () -> SolverResult """ Creates a #SolverResult from the decisions in _solution """ decisions = self._solution.decisions return SolverResult( self._root, [p for p in decisions if not p.is_root()], self._solution.atte...	[ "def", "_result", "(", "self", ")", ":", "# type: () -> SolverResult", "decisions", "=", "self", ".", "_solution", ".", "decisions", "return", "SolverResult", "(", "self", ".", "_root", ",", "[", "p", "for", "p", "in", "decisions", "if", "not", "p", ".", ...	30.545455	14
def get_prefetch_queryset(self, instances, queryset=None): """ Overrides the parent method to: - force queryset to use the querytime of the parent objects - ensure that the join is done on identity, not id - make the cache key identity, not id. """ if queryse...	[ "def", "get_prefetch_queryset", "(", "self", ",", "instances", ",", "queryset", "=", "None", ")", ":", "if", "queryset", "is", "None", ":", "queryset", "=", "self", ".", "get_queryset", "(", ")", "queryset", ".", "_add_hints", "(", "instance", "=", "instan...	48.130435	20.434783
def set_metadata(self, loadbalancer, metadata, node=None): """ Sets the metadata for the load balancer to the supplied dictionary of values. Any existing metadata is cleared. If 'node' is provided, the metadata for that node is set instead of for the load balancer. """ # ...	[ "def", "set_metadata", "(", "self", ",", "loadbalancer", ",", "metadata", ",", "node", "=", "None", ")", ":", "# Delete any existing metadata", "self", ".", "delete_metadata", "(", "loadbalancer", ",", "node", "=", "node", ")", "# Convert the metadata dict into the ...	47.736842	18.578947
def _varscan_work(align_bams, ref_file, items, target_regions, out_file): """Perform SNP and indel genotyping with VarScan. """ config = items[0]["config"] orig_out_file = out_file out_file = orig_out_file.replace(".vcf.gz", ".vcf") max_read_depth = "1000" sample_list = _create_sample_list...	[ "def", "_varscan_work", "(", "align_bams", ",", "ref_file", ",", "items", ",", "target_regions", ",", "out_file", ")", ":", "config", "=", "items", "[", "0", "]", "[", "\"config\"", "]", "orig_out_file", "=", "out_file", "out_file", "=", "orig_out_file", "."...	52.97619	21.666667
def put(self, locator = None, component = None): """ Puts a new reference into this reference map. :param locator: a component reference to be added. :param component: a locator to find the reference by. """ if component == None: raise Exception("Component c...	[ "def", "put", "(", "self", ",", "locator", "=", "None", ",", "component", "=", "None", ")", ":", "if", "component", "==", "None", ":", "raise", "Exception", "(", "\"Component cannot be null\"", ")", "self", ".", "_lock", ".", "acquire", "(", ")", "try", ...	30	19
def new_add_public_key_transaction(self, ont_id: str, bytes_operator: bytes, new_pub_key: str or bytes, b58_payer_address: str, gas_limit: int, gas_price: int, is_recovery: bool = False): """ This interface is used to send a T...	[ "def", "new_add_public_key_transaction", "(", "self", ",", "ont_id", ":", "str", ",", "bytes_operator", ":", "bytes", ",", "new_pub_key", ":", "str", "or", "bytes", ",", "b58_payer_address", ":", "str", ",", "gas_limit", ":", "int", ",", "gas_price", ":", "i...	57.925926	30.814815
def setup_schedule(self): "Called when schedule is intialized. Fetch schedules from DB etc here" log.info("SQLAlchemyScheduler.setup_schedule called") if 'celery.backend_cleanup' not in self._schedule: self._schedule['celery.backend_cleanup'] = ScheduleEntry( name='...	[ "def", "setup_schedule", "(", "self", ")", ":", "log", ".", "info", "(", "\"SQLAlchemyScheduler.setup_schedule called\"", ")", "if", "'celery.backend_cleanup'", "not", "in", "self", ".", "_schedule", ":", "self", ".", "_schedule", "[", "'celery.backend_cleanup'", "]...	40.916667	21.25
def count_objects_by_tags(self, metric, scraper_config): """ Count objects by whitelisted tags and submit counts as gauges. """ config = self.object_count_params[metric.name] metric_name = "{}.{}".format(scraper_config['namespace'], config['metric_name']) object_counter = Counter() ...	[ "def", "count_objects_by_tags", "(", "self", ",", "metric", ",", "scraper_config", ")", ":", "config", "=", "self", ".", "object_count_params", "[", "metric", ".", "name", "]", "metric_name", "=", "\"{}.{}\"", ".", "format", "(", "scraper_config", "[", "'names...	51.071429	23.928571
def main(args): '''main entry point of app Arguments: args {namespace} -- arguments provided in cli ''' print("\nNote it's very possible that this doesn't work correctly so take what it gives with a bucketload of salt\n") ######################### # # ...	[ "def", "main", "(", "args", ")", ":", "print", "(", "\"\\nNote it's very possible that this doesn't work correctly so take what it gives with a bucketload of salt\\n\"", ")", "#########################", "# #", "# #", "# prompt #",...	34.574468	23.042553
def template(args, *kwargs): ''' Get a rendered template as a string iterator. You can use a name, a filename or a template string as first parameter. Template rendering arguments can be passed as dictionaries or directly (as keyword arguments). ''' tpl = args[0] if args else None temp...	[ "def", "template", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "tpl", "=", "args", "[", "0", "]", "if", "args", "else", "None", "template_adapter", "=", "kwargs", ".", "pop", "(", "'template_adapter'", ",", "SimpleTemplate", ")", "if", "tpl", ...	46.73913	18.391304
def _queue_management_worker(self): """ TODO: docstring """ logger.debug("[MTHREAD] queue management worker starting") while True: task_id, buf = self.incoming_q.get() # TODO: why does this hang? msg = deserialize_object(buf)[0] # TODO: handle exceptions ...	[ "def", "_queue_management_worker", "(", "self", ")", ":", "logger", ".", "debug", "(", "\"[MTHREAD] queue management worker starting\"", ")", "while", "True", ":", "task_id", ",", "buf", "=", "self", ".", "incoming_q", ".", "get", "(", ")", "# TODO: why does this ...	39.861111	21.444444
def queryModelIDs(self): """Queuries DB for model IDs of all currently instantiated models associated with this HyperSearch job. See also: _iterModels() Parameters: ---------------------------------------------------------------------- retval: A sequence of Nupic modelIDs """ j...	[ "def", "queryModelIDs", "(", "self", ")", ":", "jobID", "=", "self", ".", "getJobID", "(", ")", "modelCounterPairs", "=", "_clientJobsDB", "(", ")", ".", "modelsGetUpdateCounters", "(", "jobID", ")", "modelIDs", "=", "tuple", "(", "x", "[", "0", "]", "fo...	31.6	19.6
def get_expected_tokens(self, parser, interval_set): # type: (QuilParser, IntervalSet) -> Iterator """ Like the default getExpectedTokens method except that it will fallback to the rule name if the token isn't a literal. For instance, instead of <INVALID> for integer it will return the ...	[ "def", "get_expected_tokens", "(", "self", ",", "parser", ",", "interval_set", ")", ":", "# type: (QuilParser, IntervalSet) -> Iterator", "for", "tok", "in", "interval_set", ":", "literal_name", "=", "parser", ".", "literalNames", "[", "tok", "]", "symbolic_name", "...	43.285714	19.142857
def is_convertible_with(self, other): """Returns True iff `self` is convertible with `other`. Two possibly-partially-defined shapes are convertible if there exists a fully-defined shape that both shapes can represent. Thus, convertibility allows the shape inference code to reason about ...	[ "def", "is_convertible_with", "(", "self", ",", "other", ")", ":", "other", "=", "as_shape", "(", "other", ")", "if", "self", ".", "_dims", "is", "not", "None", "and", "other", ".", "dims", "is", "not", "None", ":", "if", "self", ".", "ndims", "!=", ...	44.956522	25.913043
def get_pvc_manifest(self): """ Make a pvc manifest that will spawn current user's pvc. """ labels = self._build_common_labels(self._expand_all(self.storage_extra_labels)) labels.update({ 'component': 'singleuser-storage' }) annotations = self._build_...	[ "def", "get_pvc_manifest", "(", "self", ")", ":", "labels", "=", "self", ".", "_build_common_labels", "(", "self", ".", "_expand_all", "(", "self", ".", "storage_extra_labels", ")", ")", "labels", ".", "update", "(", "{", "'component'", ":", "'singleuser-stora...	31.368421	17.052632
def list_slack(): """List channels & users in slack.""" try: token = os.environ['SLACK_TOKEN'] slack = Slacker(token) # Get channel list response = slack.channels.list() channels = response.body['channels'] for channel in channels: print(channel['id']...	[ "def", "list_slack", "(", ")", ":", "try", ":", "token", "=", "os", ".", "environ", "[", "'SLACK_TOKEN'", "]", "slack", "=", "Slacker", "(", "token", ")", "# Get channel list", "response", "=", "slack", ".", "channels", ".", "list", "(", ")", "channels",...	32.08	14.2
def get_strategy(name_or_cls): """Return the strategy identified by its name. If ``name_or_class`` is a class, it will be simply returned. """ if isinstance(name_or_cls, six.string_types): if name_or_cls not in STRATS: raise MutationError("strat is not defined") return STRATS...	[ "def", "get_strategy", "(", "name_or_cls", ")", ":", "if", "isinstance", "(", "name_or_cls", ",", "six", ".", "string_types", ")", ":", "if", "name_or_cls", "not", "in", "STRATS", ":", "raise", "MutationError", "(", "\"strat is not defined\"", ")", "return", "...	35.2	10.6
def handleFailure(self, test, err): """ Baseclass override. Called when a test fails. If the test isn't going to be rerun again, then report the failure to the nose test result. :param test: The test that has raised an error :type test: :class:`n...	[ "def", "handleFailure", "(", "self", ",", "test", ",", "err", ")", ":", "# pylint:disable=invalid-name", "want_failure", "=", "self", ".", "_handle_test_error_or_failure", "(", "test", ",", "err", ")", "if", "not", "want_failure", "and", "id", "(", "test", ")"...	35.48	18.68
def get_cost_per_mol(self, comp): """ Get best estimate of minimum cost/mol based on known data Args: comp: Composition as a pymatgen.core.structure.Composition Returns: float of cost/mol """ comp = comp if isinstance(comp, Compos...	[ "def", "get_cost_per_mol", "(", "self", ",", "comp", ")", ":", "comp", "=", "comp", "if", "isinstance", "(", "comp", ",", "Composition", ")", "else", "Composition", "(", "comp", ")", "decomp", "=", "self", ".", "get_lowest_decomposition", "(", "comp", ")",...	32.866667	20.466667
def dpt_timeseries(adata, color_map=None, show=None, save=None, as_heatmap=True): """Heatmap of pseudotime series. Parameters ---------- as_heatmap : bool (default: False) Plot the timeseries as heatmap. """ if adata.n_vars > 100: logg.warn('Plotting more than 100 genes might ta...	[ "def", "dpt_timeseries", "(", "adata", ",", "color_map", "=", "None", ",", "show", "=", "None", ",", "save", "=", "None", ",", "as_heatmap", "=", "True", ")", ":", "if", "adata", ".", "n_vars", ">", "100", ":", "logg", ".", "warn", "(", "'Plotting mo...	45.230769	20.192308
def has_path(nodes, A, B): r"""Test if nodes from a breadth_first_order search lead from A to B. Parameters ---------- nodes : array_like Nodes from breadth_first_oder_seatch A : array_like The set of educt states B : array_like The set of product states Returns...	[ "def", "has_path", "(", "nodes", ",", "A", ",", "B", ")", ":", "x1", "=", "np", ".", "intersect1d", "(", "nodes", ",", "A", ")", ".", "size", ">", "0", "x2", "=", "np", ".", "intersect1d", "(", "nodes", ",", "B", ")", ".", "size", ">", "0", ...	22.636364	18.590909
def _parse(self, comp_att): """ Check if the value of component is correct in the attribute "comp_att". :param string comp_att: attribute associated with value of component :returns: None :exception: ValueError - incorrect value of component """ errmsg = "Invali...	[ "def", "_parse", "(", "self", ",", "comp_att", ")", ":", "errmsg", "=", "\"Invalid attribute '{0}'\"", ".", "format", "(", "comp_att", ")", "if", "not", "CPEComponent", ".", "is_valid_attribute", "(", "comp_att", ")", ":", "raise", "ValueError", "(", "errmsg",...	32.594595	17.459459
def _fetch_pages(self, item_type, items_key, request_path, startAt=0, maxResults=50, params=None, base=JIRA_BASE_URL, ): """Fetch pages. ...	[ "def", "_fetch_pages", "(", "self", ",", "item_type", ",", "items_key", ",", "request_path", ",", "startAt", "=", "0", ",", "maxResults", "=", "50", ",", "params", "=", "None", ",", "base", "=", "JIRA_BASE_URL", ",", ")", ":", "async_class", "=", "None",...	48.228571	21.409524
def mod(self): """ Cached compiled binary of the Generic_Code class. To clear cache invoke :meth:`clear_mod_cache`. """ if self._mod is None: self._mod = self.compile_and_import_binary() return self._mod	[ "def", "mod", "(", "self", ")", ":", "if", "self", ".", "_mod", "is", "None", ":", "self", ".", "_mod", "=", "self", ".", "compile_and_import_binary", "(", ")", "return", "self", ".", "_mod" ]	31.125	15.375
def logged_delete(self, user): """Delete the document and log the event in the change log""" self.delete() # Log the change entry = ChangeLogEntry({ 'type': 'DELETED', 'documents': [self], 'user': user }) entry.insert() r...	[ "def", "logged_delete", "(", "self", ",", "user", ")", ":", "self", ".", "delete", "(", ")", "# Log the change", "entry", "=", "ChangeLogEntry", "(", "{", "'type'", ":", "'DELETED'", ",", "'documents'", ":", "[", "self", "]", ",", "'user'", ":", "user", ...	22.714286	19.357143
def _compute_follow(self): """Computes the FOLLOW set for every non-terminal in the grammar. Tenatively based on _compute_follow in PLY. """ self._follow[self.start_symbol].add(END_OF_INPUT) while True: changed = False for nonterminal, productions in se...	[ "def", "_compute_follow", "(", "self", ")", ":", "self", ".", "_follow", "[", "self", ".", "start_symbol", "]", ".", "add", "(", "END_OF_INPUT", ")", "while", "True", ":", "changed", "=", "False", "for", "nonterminal", ",", "productions", "in", "self", "...	37.814815	21.666667
def _get_callers(items, stage, special_cases=False): """Retrieve available callers for the provided stage. Handles special cases like CNVkit that can be in initial or standard depending on if fed into Lumpy analysis. """ callers = utils.deepish_copy(_CALLERS[stage]) if special_cases and "cnvkit...	[ "def", "_get_callers", "(", "items", ",", "stage", ",", "special_cases", "=", "False", ")", ":", "callers", "=", "utils", ".", "deepish_copy", "(", "_CALLERS", "[", "stage", "]", ")", "if", "special_cases", "and", "\"cnvkit\"", "in", "callers", ":", "has_l...	43.294118	16.823529
def nonlocal_packages_path(self): """Returns package search paths with local path removed.""" paths = self.packages_path[:] if self.local_packages_path in paths: paths.remove(self.local_packages_path) return paths	[ "def", "nonlocal_packages_path", "(", "self", ")", ":", "paths", "=", "self", ".", "packages_path", "[", ":", "]", "if", "self", ".", "local_packages_path", "in", "paths", ":", "paths", ".", "remove", "(", "self", ".", "local_packages_path", ")", "return", ...	42	7.5
def is_cpf(numero, estrito=False): """Uma versão conveniente para usar em testes condicionais. Apenas retorna verdadeiro ou falso, conforme o argumento é validado. :param bool estrito: Padrão ``False``, indica se apenas os dígitos do número deverão ser considerados. Se verdadeiro, potenciais caract...	[ "def", "is_cpf", "(", "numero", ",", "estrito", "=", "False", ")", ":", "try", ":", "cpf", "(", "digitos", "(", "numero", ")", "if", "not", "estrito", "else", "numero", ")", "return", "True", "except", "NumeroCPFError", ":", "pass", "return", "False" ]	36	23
def load_strain(self, strain_id, strain_genome_file): """Load a strain as a new GEM-PRO by its ID and associated genome file. Stored in the ``strains`` attribute. Args: strain_id (str): Strain ID strain_genome_file (str): Path to strain genome file """ # logging...	[ "def", "load_strain", "(", "self", ",", "strain_id", ",", "strain_genome_file", ")", ":", "# logging.disable(logging.WARNING)", "strain_gp", "=", "GEMPRO", "(", "gem_name", "=", "strain_id", ",", "genome_path", "=", "strain_genome_file", ",", "write_protein_fasta_files"...	41.071429	19.285714
def cached( cls, release=MAX_ENSEMBL_RELEASE, species=human, server=ENSEMBL_FTP_SERVER): """ Construct EnsemblRelease if it's never been made before, otherwise return an old instance. """ init_args_tuple = cls.normalize_init_values(...	[ "def", "cached", "(", "cls", ",", "release", "=", "MAX_ENSEMBL_RELEASE", ",", "species", "=", "human", ",", "server", "=", "ENSEMBL_FTP_SERVER", ")", ":", "init_args_tuple", "=", "cls", ".", "normalize_init_values", "(", "release", ",", "species", ",", "server...	36.8	17.066667
def name_tree(tree): """ Names all the tree nodes that are not named or have non-unique names, with unique names. :param tree: tree to be named :type tree: ete3.Tree :return: void, modifies the original tree """ existing_names = Counter((_.name for _ in tree.traverse() if _.name)) if s...	[ "def", "name_tree", "(", "tree", ")", ":", "existing_names", "=", "Counter", "(", "(", "_", ".", "name", "for", "_", "in", "tree", ".", "traverse", "(", ")", "if", "_", ".", "name", ")", ")", "if", "sum", "(", "1", "for", "_", "in", "tree", "."...	35.142857	20.571429
def _is_compatible_with(self, other): """ Return True if names are not incompatible. This checks that the gender of titles and compatibility of suffixes """ title = self._compare_title(other) suffix = self._compare_suffix(other) return title and suffix	[ "def", "_is_compatible_with", "(", "self", ",", "other", ")", ":", "title", "=", "self", ".", "_compare_title", "(", "other", ")", "suffix", "=", "self", ".", "_compare_suffix", "(", "other", ")", "return", "title", "and", "suffix" ]	27.363636	16.636364
def remove_context(self, name): """Remove a context from kubeconfig. """ context = self.get_context(name) contexts = self.get_contexts() contexts.remove(context)	[ "def", "remove_context", "(", "self", ",", "name", ")", ":", "context", "=", "self", ".", "get_context", "(", "name", ")", "contexts", "=", "self", ".", "get_contexts", "(", ")", "contexts", ".", "remove", "(", "context", ")" ]	32.666667	3.166667
def congestion(self): """Retrieves the congestion information of the incident/incidents from the output response Returns: congestion(namedtuple): List of named tuples of congestion info of the incident/incidents """ resource_list = self.traffic_incident()...	[ "def", "congestion", "(", "self", ")", ":", "resource_list", "=", "self", ".", "traffic_incident", "(", ")", "congestion", "=", "namedtuple", "(", "'congestion'", ",", "'congestion'", ")", "if", "len", "(", "resource_list", ")", "==", "1", "and", "resource_l...	38.5	16.909091
def _looks_like_lru_cache(node): """Check if the given function node is decorated with lru_cache.""" if not node.decorators: return False for decorator in node.decorators.nodes: if not isinstance(decorator, astroid.Call): continue if _looks_like_functools_member(decorator...	[ "def", "_looks_like_lru_cache", "(", "node", ")", ":", "if", "not", "node", ".", "decorators", ":", "return", "False", "for", "decorator", "in", "node", ".", "decorators", ".", "nodes", ":", "if", "not", "isinstance", "(", "decorator", ",", "astroid", ".",...	36.7	14
def makeCNBaseURL(url): """Attempt to create a valid CN BaseURL when one or more sections of the URL are missing.""" o = urllib.parse.urlparse(url, scheme=d1_common.const.DEFAULT_CN_PROTOCOL) if o.netloc and o.path: netloc = o.netloc path = o.path elif o.netloc: netloc = o.ne...	[ "def", "makeCNBaseURL", "(", "url", ")", ":", "o", "=", "urllib", ".", "parse", ".", "urlparse", "(", "url", ",", "scheme", "=", "d1_common", ".", "const", ".", "DEFAULT_CN_PROTOCOL", ")", "if", "o", ".", "netloc", "and", "o", ".", "path", ":", "netl...	32.434783	16.304348
def get_bboxes( img, mask, nb_boxes=100, score_thresh=0.5, iou_thresh=0.2, prop_size=0.09, prop_scale=1.2, ): """ Uses selective search to generate candidate bounding boxes and keeps the ones that have the largest iou with the predicted mask. :param img: original image :...	[ "def", "get_bboxes", "(", "img", ",", "mask", ",", "nb_boxes", "=", "100", ",", "score_thresh", "=", "0.5", ",", "iou_thresh", "=", "0.2", ",", "prop_size", "=", "0.09", ",", "prop_scale", "=", "1.2", ",", ")", ":", "min_size", "=", "int", "(", "img"...	37.470588	17.588235
def init(): """Initiates a new website""" print("Blended: Static Website Generator -\n") checkConfig() if (sys.version_info > (3, 0)): wname = input("Website Name: ") wdesc = input("Website Description: ") wlan = input("Website Language: ") wlic = input("Website Licens...	[ "def", "init", "(", ")", ":", "print", "(", "\"Blended: Static Website Generator -\\n\"", ")", "checkConfig", "(", ")", "if", "(", "sys", ".", "version_info", ">", "(", "3", ",", "0", ")", ")", ":", "wname", "=", "input", "(", "\"Website Name: \"", ")", ...	31.518519	17.407407
def new_max_pool(self, name:str, kernel_size: tuple, stride_size: tuple, padding='SAME', input_layer_name: str=None): """ Creates a new max pooling layer. :param name: name for the layer. :param kernel_size: tuple containing the size of the kernel (Width, Height) ...	[ "def", "new_max_pool", "(", "self", ",", "name", ":", "str", ",", "kernel_size", ":", "tuple", ",", "stride_size", ":", "tuple", ",", "padding", "=", "'SAME'", ",", "input_layer_name", ":", "str", "=", "None", ")", ":", "self", ".", "__validate_padding", ...	46.782609	24.956522
def run( self ): """Run the experiment, using the parameters set using :meth:`set`. A "run" consists of calling :meth:`setUp`, :meth:`do`, and :meth:`tearDown`, followed by collecting and storing (and returning) the experiment's results. If running the experiment raises an except...	[ "def", "run", "(", "self", ")", ":", "# perform the experiment protocol", "params", "=", "self", ".", "parameters", "(", ")", "self", ".", "_metadata", "=", "dict", "(", ")", "self", ".", "_results", "=", "None", "res", "=", "None", "doneSetupTime", "=", ...	43.730159	18.825397
def convert_to_jbig2(pike, jbig2_groups, root, log, options): """Convert images to JBIG2 and insert into PDF. When the JBIG2 page group size is > 1 we do several JBIG2 images at once and build a symbol dictionary that will span several pages. Each JBIG2 image must reference to its symbol dictionary. If...	[ "def", "convert_to_jbig2", "(", "pike", ",", "jbig2_groups", ",", "root", ",", "log", ",", "options", ")", ":", "_produce_jbig2_images", "(", "jbig2_groups", ",", "root", ",", "log", ",", "options", ")", "for", "group", ",", "xref_exts", "in", "jbig2_groups"...	45.805556	22.638889
def get_front_page(self, args, *kwargs): """Return a get_content generator for the front page submissions. Corresponds to the submissions provided by ``https://www.reddit.com/`` for the session. The additional parameters are passed directly into :meth:`.get_content`. Note: th...	[ "def", "get_front_page", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "get_content", "(", "self", ".", "config", "[", "'reddit_url'", "]", ",", "", "args", ",", "", "", "kwargs", ")" ]	39.545455	23.909091
def accept(self): """accept() -> (socket object, address info) Wait for an incoming connection. Return a new socket representing the connection, and the address of the client. For IP sockets, the address info is a pair (hostaddr, port). """ fd, addr = self._accept() ...	[ "def", "accept", "(", "self", ")", ":", "fd", ",", "addr", "=", "self", ".", "_accept", "(", ")", "sock", "=", "socket", "(", "self", ".", "family", ",", "self", ".", "type", ",", "self", ".", "proto", ",", "fileno", "=", "fd", ")", "# Issue #799...	47.4	20.666667
def get_host_ip(self, env_with_dig='ingi/inginious-c-default'): """ Get the external IP of the host of the docker daemon. Uses OpenDNS internally. :param env_with_dig: any container image that has dig """ try: container = self._docker.containers.create(env_with_dig, c...	[ "def", "get_host_ip", "(", "self", ",", "env_with_dig", "=", "'ingi/inginious-c-default'", ")", ":", "try", ":", "container", "=", "self", ".", "_docker", ".", "containers", ".", "create", "(", "env_with_dig", ",", "command", "=", "\"dig +short myip.opendns.com @r...	49.666667	26.466667
def get_parser_class(): """ Returns the parser according to the system platform """ global distro if distro == 'Linux': Parser = parser.LinuxParser if not os.path.exists(Parser.get_command()[0]): Parser = parser.UnixIPParser elif distro in ['Darwin', 'MacOSX']: ...	[ "def", "get_parser_class", "(", ")", ":", "global", "distro", "if", "distro", "==", "'Linux'", ":", "Parser", "=", "parser", ".", "LinuxParser", "if", "not", "os", ".", "path", ".", "exists", "(", "Parser", ".", "get_command", "(", ")", "[", "0", "]", ...	33.045455	12.590909
def register(self, metadata): """ Register a distribution on PyPI, using the provided metadata. :param metadata: A :class:`Metadata` instance defining at least a name and version number for the distribution to be registered. :return: The...	[ "def", "register", "(", "self", ",", "metadata", ")", ":", "self", ".", "check_credentials", "(", ")", "metadata", ".", "validate", "(", ")", "d", "=", "metadata", ".", "todict", "(", ")", "d", "[", "':action'", "]", "=", "'verify'", "request", "=", ...	39.157895	14.947368
def get_s3_multipart_chunk_size(filesize): """Returns the chunk size of the S3 multipart object, given a file's size.""" if filesize <= AWS_MAX_MULTIPART_COUNT * AWS_MIN_CHUNK_SIZE: return AWS_MIN_CHUNK_SIZE else: div = filesize // AWS_MAX_MULTIPART_COUNT if div * AWS_MAX_MULTIPART_C...	[ "def", "get_s3_multipart_chunk_size", "(", "filesize", ")", ":", "if", "filesize", "<=", "AWS_MAX_MULTIPART_COUNT", "", "AWS_MIN_CHUNK_SIZE", ":", "return", "AWS_MIN_CHUNK_SIZE", "else", ":", "div", "=", "filesize", "//", "AWS_MAX_MULTIPART_COUNT", "if", "div", "", ...	43.888889	12.222222
def validate(self): """ validates the feature configuration, and returns a list of errors (empty list if no error) validate should: * required variables * warn on unused variables errors should either be reported via self._log_error(), or raise an exception """...	[ "def", "validate", "(", "self", ")", ":", "if", "self", ".", "target", ":", "for", "k", "in", "self", ".", "target", ".", "keys", "(", ")", ":", "if", "k", "in", "self", ".", "deprecated_options", ":", "self", ".", "logger", ".", "warn", "(", "se...	43.478261	23.304348
def get(self, timeout=None): """ Return value on success, or raise exception on failure. """ result = None try: result = self._result.get(True, timeout=timeout) except Empty: raise Timeout() if isinstance(result, Failure): six....	[ "def", "get", "(", "self", ",", "timeout", "=", "None", ")", ":", "result", "=", "None", "try", ":", "result", "=", "self", ".", "_result", ".", "get", "(", "True", ",", "timeout", "=", "timeout", ")", "except", "Empty", ":", "raise", "Timeout", "(...	26.571429	15.571429
def acquisition_function(self, x): """ Returns the value of the acquisition function at x. """ return self._penalized_acquisition(x, self.model, self.X_batch, self.r_x0, self.s_x0)	[ "def", "acquisition_function", "(", "self", ",", "x", ")", ":", "return", "self", ".", "_penalized_acquisition", "(", "x", ",", "self", ".", "model", ",", "self", ".", "X_batch", ",", "self", ".", "r_x0", ",", "self", ".", "s_x0", ")" ]	34.666667	19.666667
def generate_lines_for_vocab(tmp_dir, sources, file_byte_budget=1e6): """Generate lines for vocabulary generation.""" tf.logging.info("Generating vocab from: %s", str(sources)) for source in sources: url = source[0] filename = os.path.basename(url) compressed_file = maybe_download(tmp_dir, filename, u...	[ "def", "generate_lines_for_vocab", "(", "tmp_dir", ",", "sources", ",", "file_byte_budget", "=", "1e6", ")", ":", "tf", ".", "logging", ".", "info", "(", "\"Generating vocab from: %s\"", ",", "str", "(", "sources", ")", ")", "for", "source", "in", "sources", ...	37.674419	16.72093
def prepare_package(err, path, expectation=0, for_appversions=None, timeout=-1): """Prepares a file-based package for validation. timeout is the number of seconds before validation is aborted. If timeout is -1 then no timeout checking code will run. """ package = None try: ...	[ "def", "prepare_package", "(", "err", ",", "path", ",", "expectation", "=", "0", ",", "for_appversions", "=", "None", ",", "timeout", "=", "-", "1", ")", ":", "package", "=", "None", "try", ":", "# Test that the package actually exists. I consider this Tier 0", ...	37.742424	20.787879
def _real_re_compile(self, args, kwargs): """Thunk over to the original re.compile""" try: return re.compile(args, **kwargs) except re.error as e: # raise ValueError instead of re.error as this gives a # cleaner message to the user. raise Value...	[ "def", "_real_re_compile", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "try", ":", "return", "re", ".", "compile", "(", "", "args", ",", "", "", "kwargs", ")", "except", "re", ".", "error", "as", "e", ":", "# raise ValueErr...	43.625	12
def __set_lost_start_status(self, hgvs_string): """Sets the self.is_lost_start flag.""" # set is lost start status mymatch = re.search('^([A-Z?])(\d+)([A-Z?])$', hgvs_string) if mymatch: grps = mymatch.groups() if int(grps[1]) == 1 and grps[0] != grps[2]: ...	[ "def", "__set_lost_start_status", "(", "self", ",", "hgvs_string", ")", ":", "# set is lost start status", "mymatch", "=", "re", ".", "search", "(", "'^([A-Z?])(\\d+)([A-Z?])$'", ",", "hgvs_string", ")", "if", "mymatch", ":", "grps", "=", "mymatch", ".", "groups",...	38.230769	10.615385
def post_fork_child(self, fingerprint, jvm_options, classpath, stdout, stderr): """Post-fork() child callback for ProcessManager.daemon_spawn().""" java = SubprocessExecutor(self._distribution) subproc = java.spawn(classpath=classpath, main='com.martiansoftware.nailgun.NGServer', ...	[ "def", "post_fork_child", "(", "self", ",", "fingerprint", ",", "jvm_options", ",", "classpath", ",", "stdout", ",", "stderr", ")", ":", "java", "=", "SubprocessExecutor", "(", "self", ".", "_distribution", ")", "subproc", "=", "java", ".", "spawn", "(", "...	46.928571	17.857143
def add_defaults(self, ctype: ContentType = None) -> "InstanceNode": """Return the receiver with defaults added recursively to its value. Args: ctype: Content type of the defaults to be added. If it is ``None``, the content type will be the same as receiver's. """ ...	[ "def", "add_defaults", "(", "self", ",", "ctype", ":", "ContentType", "=", "None", ")", "->", "\"InstanceNode\"", ":", "val", "=", "self", ".", "value", "if", "not", "(", "isinstance", "(", "val", ",", "StructuredValue", ")", "and", "self", ".", "is_inte...	36.321429	17.785714
def page_context(request, site, **criterias): 'Returns the context dictionary for a page view.' try: page = int(request.GET.get('page', 1)) except ValueError: page = 1 feed, tag = criterias.get('feed'), criterias.get('tag') if feed: try: feed = models.Feed.objects.get(pk=feed) except ObjectDoesNotExist: raise...	[ "def", "page_context", "(", "request", ",", "site", ",", "", "", "criterias", ")", ":", "try", ":", "page", "=", "int", "(", "request", ".", "GET", ".", "get", "(", "'page'", ",", "1", ")", ")", "except", "ValueError", ":", "page", "=", "1", "f...	33.6	18.025
def clear_terminal(self): """Reimplement ShellBaseWidget method""" self.clear() self.new_prompt(self.interpreter.p2 if self.interpreter.more else self.interpreter.p1)	[ "def", "clear_terminal", "(", "self", ")", ":", "self", ".", "clear", "(", ")", "self", ".", "new_prompt", "(", "self", ".", "interpreter", ".", "p2", "if", "self", ".", "interpreter", ".", "more", "else", "self", ".", "interpreter", ".", "p1", ")" ]	47.5	21.75
def timeit(hosts=None, stmt=None, warmup=30, repeat=None, duration=None, concurrency=1, output_fmt=None, fail_if=None, sample_mode='reservoir'): """Run the given statement a number of times and return the runtime stats Args...	[ "def", "timeit", "(", "hosts", "=", "None", ",", "stmt", "=", "None", ",", "warmup", "=", "30", ",", "repeat", "=", "None", ",", "duration", "=", "None", ",", "concurrency", "=", "1", ",", "output_fmt", "=", "None", ",", "fail_if", "=", "None", ","...	34.372093	16.139535
def process(self, metric): """ Queue a metric. Flushing queue if batch size reached """ if self._match_metric(metric): self.metrics.append(metric) if self.should_flush(): self._send()	[ "def", "process", "(", "self", ",", "metric", ")", ":", "if", "self", ".", "_match_metric", "(", "metric", ")", ":", "self", ".", "metrics", ".", "append", "(", "metric", ")", "if", "self", ".", "should_flush", "(", ")", ":", "self", ".", "_send", ...	30.125	7.875
def get_main_chain_layers(self): """Return a list of layer IDs in the main chain.""" main_chain = self.get_main_chain() ret = [] for u in main_chain: for v, layer_id in self.adj_list[u]: if v in main_chain and u in main_chain: ret.append(la...	[ "def", "get_main_chain_layers", "(", "self", ")", ":", "main_chain", "=", "self", ".", "get_main_chain", "(", ")", "ret", "=", "[", "]", "for", "u", "in", "main_chain", ":", "for", "v", ",", "layer_id", "in", "self", ".", "adj_list", "[", "u", "]", "...	37.555556	10.111111
def vote_least_worst(candidates, votes, n_winners): """Select "least worst" artifact as the winner of the vote. Least worst artifact is the artifact with the best worst evaluation, i.e. its worst evaluation is the best among all of the artifacts. Ties are resolved randomly. :param candidates: All...	[ "def", "vote_least_worst", "(", "candidates", ",", "votes", ",", "n_winners", ")", ":", "worsts", "=", "{", "str", "(", "c", ")", ":", "100000000.0", "for", "c", "in", "candidates", "}", "for", "v", "in", "votes", ":", "for", "e", "in", "v", ":", "...	33.92	16.64
def get_year(self): """ Return the year from the database in the format expected by the URL. """ year = super(BuildableDayArchiveView, self).get_year() fmt = self.get_year_format() dt = date(int(year), 1, 1) return dt.strftime(fmt)	[ "def", "get_year", "(", "self", ")", ":", "year", "=", "super", "(", "BuildableDayArchiveView", ",", "self", ")", ".", "get_year", "(", ")", "fmt", "=", "self", ".", "get_year_format", "(", ")", "dt", "=", "date", "(", "int", "(", "year", ")", ",", ...	35	12.25
def load(self, loc): '''Load a pickled model.''' try: w_td_c = pickle.load(open(loc, 'rb')) except IOError: msg = ("Missing trontagger.pickle file.") raise MissingCorpusError(msg) self.model.weights, self.tagdict, self.classes = w_td_c self.mod...	[ "def", "load", "(", "self", ",", "loc", ")", ":", "try", ":", "w_td_c", "=", "pickle", ".", "load", "(", "open", "(", "loc", ",", "'rb'", ")", ")", "except", "IOError", ":", "msg", "=", "(", "\"Missing trontagger.pickle file.\"", ")", "raise", "Missing...	35.6	13.8
def deluser(name, username): ''' Remove a user from the group. CLI Example: .. code-block:: bash salt '*' group.deluser foo bar Removes a member user 'bar' from a group 'foo'. If group is not present then returns True. ''' grp_info = __salt__['group.info'](name) if user...	[ "def", "deluser", "(", "name", ",", "username", ")", ":", "grp_info", "=", "__salt__", "[", "'group.info'", "]", "(", "name", ")", "if", "username", "not", "in", "grp_info", "[", "'members'", "]", ":", "return", "True", "# Note: pw exits with code 65 if group ...	23.695652	23.956522
def alltoall_ring(xs, devices, split_axis, concat_axis): """MPI alltoall operation. Performance-optimized for a ring of devices. Args: xs: a list of n tf.Tensors devices: a list of n strings split_axis: an integer concat_axis: an integer Returns: a list of n Tensors """ n = len(xs) ...	[ "def", "alltoall_ring", "(", "xs", ",", "devices", ",", "split_axis", ",", "concat_axis", ")", ":", "n", "=", "len", "(", "xs", ")", "if", "n", "==", "1", ":", "return", "xs", "# set up", "# [target, source]", "parts", "=", "[", "[", "None", "]", "*"...	35.932203	16.898305
def unicode_csv_reader(unicode_csv_data, **kwargs): """Since the standard csv library does not handle unicode in Python 2, we need a wrapper. Borrowed and slightly modified from the Python docs: https://docs.python.org/2/library/csv.html#csv-examples""" if six.PY2: # csv.py doesn't do Unicode; e...	[ "def", "unicode_csv_reader", "(", "unicode_csv_data", ",", "", "", "kwargs", ")", ":", "if", "six", ".", "PY2", ":", "# csv.py doesn't do Unicode; encode temporarily as UTF-8:", "csv_reader", "=", "csv", ".", "reader", "(", "utf_8_encoder", "(", "unicode_csv_data", ...	49.923077	17.076923
def tcl_add_fileset_file(filename: str): """ :param filename: relative filename with .vhdl or .v :return: add_fileset_file command string """ if filename.endswith(".vhd"): t = "VHDL" elif filename.endswith(".v") or filename.endswith(".sv"): t = "VERILOG" else: raise ...	[ "def", "tcl_add_fileset_file", "(", "filename", ":", "str", ")", ":", "if", "filename", ".", "endswith", "(", "\".vhd\"", ")", ":", "t", "=", "\"VHDL\"", "elif", "filename", ".", "endswith", "(", "\".v\"", ")", "or", "filename", ".", "endswith", "(", "\"...	30.5625	16.6875
def set_hparam(self, name, value): """Set the value of an existing hyperparameter. This function verifies that the type of the value matches the type of the existing hyperparameter. Args: name: Name of the hyperparameter. value: New value of the hyperparameter. Raises: KeyError:...	[ "def", "set_hparam", "(", "self", ",", "name", ",", "value", ")", ":", "param_type", ",", "is_list", "=", "self", ".", "_hparam_types", "[", "name", "]", "if", "isinstance", "(", "value", ",", "list", ")", ":", "if", "not", "is_list", ":", "raise", "...	34.692308	20.461538
def get_all_conversion_chains_from_type(self, from_type: Type[Any]) \ -> Tuple[List[Converter], List[Converter], List[Converter]]: """ Utility method to find all converters from a given type. :param from_type: :return: """ return self.get_all_conversion_chain...	[ "def", "get_all_conversion_chains_from_type", "(", "self", ",", "from_type", ":", "Type", "[", "Any", "]", ")", "->", "Tuple", "[", "List", "[", "Converter", "]", ",", "List", "[", "Converter", "]", ",", "List", "[", "Converter", "]", "]", ":", "return",...	37.111111	21.111111
def read(path, saltenv='base'): ''' Read the contents of a text file, if the file is binary then ''' # Return a dict of paths + content ret = [] files = find(path, saltenv) for fn_ in files: full = next(six.iterkeys(fn_)) form = fn_[full] if form == 'txt': ...	[ "def", "read", "(", "path", ",", "saltenv", "=", "'base'", ")", ":", "# Return a dict of paths + content", "ret", "=", "[", "]", "files", "=", "find", "(", "path", ",", "saltenv", ")", "for", "fn_", "in", "files", ":", "full", "=", "next", "(", "six", ...	30.5	19
def _alert_malformed(self, msg, row_num): """ Alert a user about a malformed row. If `self.error_bad_lines` is True, the alert will be `ParserError`. If `self.warn_bad_lines` is True, the alert will be printed out. Parameters ---------- msg : The error message t...	[ "def", "_alert_malformed", "(", "self", ",", "msg", ",", "row_num", ")", ":", "if", "self", ".", "error_bad_lines", ":", "raise", "ParserError", "(", "msg", ")", "elif", "self", ".", "warn_bad_lines", ":", "base", "=", "'Skipping line {row_num}: '", ".", "fo...	36.65	18.05

def _get_mcmc_method_kernel_data_elements(self): """Get the mcmc method kernel data elements. Used by :meth:`_get_mcmc_method_kernel_data`.""" return {'proposal_stds': Array(self._proposal_stds, 'mot_float_type', mode='rw', ensure_zero_copy=True), 'x_tmp': LocalMemory('mot_float_type', n...

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def get_file_contents(filename: str = None, blob: bytes = None) -> bytes: """ Returns the binary contents of a file, or of a BLOB. """ if not filename and not blob: raise ValueError("no filename and no blob") if filename and blob: raise ValueError("specify either filename or blob") ...

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def run(input=sys.stdin, output=sys.stdout): r"""CouchDB view function handler implementation for Python. :param input: the readable file-like object to read input from :param output: the writable file-like object to write output to """ functions = [] environments = dict() def _writejson(o...

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def add_molecule(self, mol, bond=None, base=None, target=None): """connect atom group (for SMILES parser) May requires recalculation of 2D coordinate for drawing Args: mol: graphmol.Compound() the original object will be copied. bond: Bond object to be c...

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async def pick_up_tip(self, mount, tip_length: float, presses: int = None, increment: float = None): """ Pick up tip from current location. If ``presses`` or ``increment`` is not specified (o...

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def add_signaling_arguments(parser): """ Add signaling method arguments to an argparse.ArgumentParser. """ parser.add_argument('--signaling', '-s', choices=[ 'copy-and-paste', 'tcp-socket', 'unix-socket']) parser.add_argument('--signaling-host', default='127.0.0.1', h...

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def trunk_origin_elevations(nrn, neurite_type=NeuriteType.all): '''Get a list of all the trunk origin elevations of a neuron or population The elevation is defined as the angle between x-axis and the vector defined by (initial tree point - soma center) on the x-y half-plane. The range of the eleva...

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def get_methods_names(public_properties): """ Generates the names of the fields where to inject the getter and setter methods :param public_properties: If True, returns the names of public property accessors, else of hidden property ones :return...

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def add_header(self, header): """Add a custom HTTP header to the client's request headers""" if type(header) is dict: self._headers.update(header) else: raise ValueError( "Dictionary expected, got '%s' instead" % type(header) )

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def assign(self, dst, req, src): """Helper function for assigning into dst depending on requirements.""" if req == 'null': return elif req in ('write', 'inplace'): dst[:] = src elif req == 'add': dst[:] += src

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def get_staking_leaderboard(self, round_num=0, tournament=1): """Retrieves the leaderboard of the staking competition for the given round. Args: round_num (int, optional): The round you are interested in, defaults to current round. tournament (int, option...

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def LifoQueue(self, name, initial=None, maxsize=None): """The LIFO queue datatype. :param name: The name of the queue. :keyword initial: Initial items in the queue. See :class:`redish.types.LifoQueue`. """ return types.LifoQueue(name, self.api, ...

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def _get_defaults(func): """Internal helper to extract the default arguments, by name.""" try: code = func.__code__ except AttributeError: # Some built-in functions don't have __code__, __defaults__, etc. return {} pos_count = code.co_argcount arg_names = code.co_varnames ...

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35.5

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def averageConvergencePoint(self, prefix, minOverlap, maxOverlap, settlingTime=1, firstStat=0, lastStat=None): """ For each object, compute the convergence time - the first point when all L2 columns have converged. Return the average convergence time and accuracy across a...

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37.106383

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def autoactivate(client, endpoint_id, if_expires_in=None): """ Attempts to auto-activate the given endpoint with the given client If auto-activation fails, parses the returned activation requirements to determine which methods of activation are supported, then tells the user to use 'globus endpoint ...

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35.52

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def _timing_char(message): """ >>> message = 'MORSE CODE' >>> _timing_char(message) 'M------ O---------- R------ S---- E C---------- O---------- D------ E' """ s = '' inter_symb = ' ' inter_char = ' ' * 3 inter_word = inter_symb * 7 for i, word in enumerate(_s...

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def switch_off(self, *args): """ Sets the state of the switch to False if off_check() returns True, given the arguments provided in kwargs. :param kwargs: variable length dictionary of key-pair arguments :return: Boolean. Returns True if the operation is successful """ ...

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def _metadata_is_invalid(cls, fact): """Determines if the fact is not well formed. """ return any(isinstance(token, URIRef) and ' ' in token for token in fact)

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33

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def clone(self) -> 'ImageBBox': "Mimic the behavior of torch.clone for `Image` objects." flow = FlowField(self.size, self.flow.flow.clone()) return self.__class__(flow, scale=False, y_first=False, labels=self.labels, pad_idx=self.pad_idx)

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def verify_tree_consistency(self, old_tree_size: int, new_tree_size: int, old_root: bytes, new_root: bytes, proof: Sequence[bytes]): """Verify the consistency between two root hashes. old_tree_size must be <= new_tree_size. Args: ...

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def visit_desc(self): """ Builds a citation boilerplate by visiting all workflows appending their ``__desc__`` field """ desc = [] if self.__desc__: desc += [self.__desc__] for node in pe.utils.topological_sort(self._graph)[0]: if isinsta...

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27.9

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def space(self): """Combined Hilbert space of all matrix elements.""" arg_spaces = [o.space for o in self.matrix.ravel() if hasattr(o, 'space')] if len(arg_spaces) == 0: return TrivialSpace else: return ProductSpace.create(*arg_spaces)

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38.25

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def load_remote_settings(self, remote_bucket, remote_file): """ Attempt to read a file from s3 containing a flat json object. Adds each key->value pair as environment variables. Helpful for keeping sensitiZve or stage-specific configuration variables in s3 instead of version cont...

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def skips(self, user): """ Skips for user. Zendesk API `Reference <https://developer.zendesk.com/rest_api/docs/core/ticket_skips>`__. """ return self._get(self._build_url(self.endpoint.skips(id=user)))

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def create_alert(self, name=None, description=None, severity=None, for_atleast_s=None, condition=None, segmentby=[], segment_condition='ANY', user_filter='', notify=None, enabled=True, annotations={}, alert_obj=None): '''**Description** Create a threshold-ba...

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def _build(credentials, api_version, http_client=None): """Build the client object.""" if not http_client: http_client = httplib2.Http() authorised_client = credentials.authorize(http_client) return build("analytics", api_version, http=authorised_client)

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34.125

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def cy_bispev(tx, ty, c, kx, ky, x, y): '''Possible optimization: Do not evaluate derivatives, ever. ''' nx = len(tx) ny = len(ty) mx = len(x) my = len(y) kx1 = kx + 1 ky1 = ky + 1 nkx1 = nx - kx1 nky1 = ny - ky1 wx = [[0.0]*kx1]*mx wy = [[0.0]*ky1]*my lx = [0]...

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def _result(self): # type: () -> SolverResult """ Creates a #SolverResult from the decisions in _solution """ decisions = self._solution.decisions return SolverResult( self._root, [p for p in decisions if not p.is_root()], self._solution.atte...

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def get_prefetch_queryset(self, instances, queryset=None): """ Overrides the parent method to: - force queryset to use the querytime of the parent objects - ensure that the join is done on identity, not id - make the cache key identity, not id. """ if queryse...

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48.130435

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def set_metadata(self, loadbalancer, metadata, node=None): """ Sets the metadata for the load balancer to the supplied dictionary of values. Any existing metadata is cleared. If 'node' is provided, the metadata for that node is set instead of for the load balancer. """ # ...

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def _varscan_work(align_bams, ref_file, items, target_regions, out_file): """Perform SNP and indel genotyping with VarScan. """ config = items[0]["config"] orig_out_file = out_file out_file = orig_out_file.replace(".vcf.gz", ".vcf") max_read_depth = "1000" sample_list = _create_sample_list...

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def put(self, locator = None, component = None): """ Puts a new reference into this reference map. :param locator: a component reference to be added. :param component: a locator to find the reference by. """ if component == None: raise Exception("Component c...

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def new_add_public_key_transaction(self, ont_id: str, bytes_operator: bytes, new_pub_key: str or bytes, b58_payer_address: str, gas_limit: int, gas_price: int, is_recovery: bool = False): """ This interface is used to send a T...

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def setup_schedule(self): "Called when schedule is intialized. Fetch schedules from DB etc here" log.info("SQLAlchemyScheduler.setup_schedule called") if 'celery.backend_cleanup' not in self._schedule: self._schedule['celery.backend_cleanup'] = ScheduleEntry( name='...

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40.916667

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def count_objects_by_tags(self, metric, scraper_config): """ Count objects by whitelisted tags and submit counts as gauges. """ config = self.object_count_params[metric.name] metric_name = "{}.{}".format(scraper_config['namespace'], config['metric_name']) object_counter = Counter() ...

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51.071429

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def main(args): '''main entry point of app Arguments: args {namespace} -- arguments provided in cli ''' print("\nNote it's very possible that this doesn't work correctly so take what it gives with a bucketload of salt\n") ######################### # # ...

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def template(*args, **kwargs): ''' Get a rendered template as a string iterator. You can use a name, a filename or a template string as first parameter. Template rendering arguments can be passed as dictionaries or directly (as keyword arguments). ''' tpl = args[0] if args else None temp...

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46.73913

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def _queue_management_worker(self): """ TODO: docstring """ logger.debug("[MTHREAD] queue management worker starting") while True: task_id, buf = self.incoming_q.get() # TODO: why does this hang? msg = deserialize_object(buf)[0] # TODO: handle exceptions ...

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39.861111

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def queryModelIDs(self): """Queuries DB for model IDs of all currently instantiated models associated with this HyperSearch job. See also: _iterModels() Parameters: ---------------------------------------------------------------------- retval: A sequence of Nupic modelIDs """ j...

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31.6

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def get_expected_tokens(self, parser, interval_set): # type: (QuilParser, IntervalSet) -> Iterator """ Like the default getExpectedTokens method except that it will fallback to the rule name if the token isn't a literal. For instance, instead of <INVALID> for integer it will return the ...

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43.285714

19.142857

def is_convertible_with(self, other): """Returns True iff `self` is convertible with `other`. Two possibly-partially-defined shapes are convertible if there exists a fully-defined shape that both shapes can represent. Thus, convertibility allows the shape inference code to reason about ...

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44.956522

25.913043

def get_pvc_manifest(self): """ Make a pvc manifest that will spawn current user's pvc. """ labels = self._build_common_labels(self._expand_all(self.storage_extra_labels)) labels.update({ 'component': 'singleuser-storage' }) annotations = self._build_...

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31.368421

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def list_slack(): """List channels & users in slack.""" try: token = os.environ['SLACK_TOKEN'] slack = Slacker(token) # Get channel list response = slack.channels.list() channels = response.body['channels'] for channel in channels: print(channel['id']...

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32.08

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def get_strategy(name_or_cls): """Return the strategy identified by its name. If ``name_or_class`` is a class, it will be simply returned. """ if isinstance(name_or_cls, six.string_types): if name_or_cls not in STRATS: raise MutationError("strat is not defined") return STRATS...

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35.2

10.6

def handleFailure(self, test, err): """ Baseclass override. Called when a test fails. If the test isn't going to be rerun again, then report the failure to the nose test result. :param test: The test that has raised an error :type test: :class:`n...

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35.48

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def get_cost_per_mol(self, comp): """ Get best estimate of minimum cost/mol based on known data Args: comp: Composition as a pymatgen.core.structure.Composition Returns: float of cost/mol """ comp = comp if isinstance(comp, Compos...

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32.866667

20.466667

def dpt_timeseries(adata, color_map=None, show=None, save=None, as_heatmap=True): """Heatmap of pseudotime series. Parameters ---------- as_heatmap : bool (default: False) Plot the timeseries as heatmap. """ if adata.n_vars > 100: logg.warn('Plotting more than 100 genes might ta...

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45.230769

20.192308

def has_path(nodes, A, B): r"""Test if nodes from a breadth_first_order search lead from A to B. Parameters ---------- nodes : array_like Nodes from breadth_first_oder_seatch A : array_like The set of educt states B : array_like The set of product states Returns...

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22.636364

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def _parse(self, comp_att): """ Check if the value of component is correct in the attribute "comp_att". :param string comp_att: attribute associated with value of component :returns: None :exception: ValueError - incorrect value of component """ errmsg = "Invali...

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32.594595

17.459459

def _fetch_pages(self, item_type, items_key, request_path, startAt=0, maxResults=50, params=None, base=JIRA_BASE_URL, ): """Fetch pages. ...

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48.228571

21.409524

def mod(self): """ Cached compiled binary of the Generic_Code class. To clear cache invoke :meth:`clear_mod_cache`. """ if self._mod is None: self._mod = self.compile_and_import_binary() return self._mod

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31.125

15.375

def logged_delete(self, user): """Delete the document and log the event in the change log""" self.delete() # Log the change entry = ChangeLogEntry({ 'type': 'DELETED', 'documents': [self], 'user': user }) entry.insert() r...

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22.714286

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def _compute_follow(self): """Computes the FOLLOW set for every non-terminal in the grammar. Tenatively based on _compute_follow in PLY. """ self._follow[self.start_symbol].add(END_OF_INPUT) while True: changed = False for nonterminal, productions in se...

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37.814815

21.666667

def _get_callers(items, stage, special_cases=False): """Retrieve available callers for the provided stage. Handles special cases like CNVkit that can be in initial or standard depending on if fed into Lumpy analysis. """ callers = utils.deepish_copy(_CALLERS[stage]) if special_cases and "cnvkit...

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43.294118

16.823529

def nonlocal_packages_path(self): """Returns package search paths with local path removed.""" paths = self.packages_path[:] if self.local_packages_path in paths: paths.remove(self.local_packages_path) return paths

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42

7.5

def is_cpf(numero, estrito=False): """Uma versão conveniente para usar em testes condicionais. Apenas retorna verdadeiro ou falso, conforme o argumento é validado. :param bool estrito: Padrão ``False``, indica se apenas os dígitos do número deverão ser considerados. Se verdadeiro, potenciais caract...

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36

23

def load_strain(self, strain_id, strain_genome_file): """Load a strain as a new GEM-PRO by its ID and associated genome file. Stored in the ``strains`` attribute. Args: strain_id (str): Strain ID strain_genome_file (str): Path to strain genome file """ # logging...

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41.071429

19.285714

def cached( cls, release=MAX_ENSEMBL_RELEASE, species=human, server=ENSEMBL_FTP_SERVER): """ Construct EnsemblRelease if it's never been made before, otherwise return an old instance. """ init_args_tuple = cls.normalize_init_values(...

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36.8

17.066667

def name_tree(tree): """ Names all the tree nodes that are not named or have non-unique names, with unique names. :param tree: tree to be named :type tree: ete3.Tree :return: void, modifies the original tree """ existing_names = Counter((_.name for _ in tree.traverse() if _.name)) if s...

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35.142857

20.571429

def _is_compatible_with(self, other): """ Return True if names are not incompatible. This checks that the gender of titles and compatibility of suffixes """ title = self._compare_title(other) suffix = self._compare_suffix(other) return title and suffix

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27.363636

16.636364

def remove_context(self, name): """Remove a context from kubeconfig. """ context = self.get_context(name) contexts = self.get_contexts() contexts.remove(context)

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32.666667

3.166667

def congestion(self): """Retrieves the congestion information of the incident/incidents from the output response Returns: congestion(namedtuple): List of named tuples of congestion info of the incident/incidents """ resource_list = self.traffic_incident()...

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38.5

16.909091

def _looks_like_lru_cache(node): """Check if the given function node is decorated with lru_cache.""" if not node.decorators: return False for decorator in node.decorators.nodes: if not isinstance(decorator, astroid.Call): continue if _looks_like_functools_member(decorator...

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36.7

14

def makeCNBaseURL(url): """Attempt to create a valid CN BaseURL when one or more sections of the URL are missing.""" o = urllib.parse.urlparse(url, scheme=d1_common.const.DEFAULT_CN_PROTOCOL) if o.netloc and o.path: netloc = o.netloc path = o.path elif o.netloc: netloc = o.ne...

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32.434783

16.304348

def get_bboxes( img, mask, nb_boxes=100, score_thresh=0.5, iou_thresh=0.2, prop_size=0.09, prop_scale=1.2, ): """ Uses selective search to generate candidate bounding boxes and keeps the ones that have the largest iou with the predicted mask. :param img: original image :...

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37.470588

17.588235

def init(): """Initiates a new website""" print("Blended: Static Website Generator -\n") checkConfig() if (sys.version_info > (3, 0)): wname = input("Website Name: ") wdesc = input("Website Description: ") wlan = input("Website Language: ") wlic = input("Website Licens...

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31.518519

17.407407

def new_max_pool(self, name:str, kernel_size: tuple, stride_size: tuple, padding='SAME', input_layer_name: str=None): """ Creates a new max pooling layer. :param name: name for the layer. :param kernel_size: tuple containing the size of the kernel (Width, Height) ...

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46.782609

24.956522

def run( self ): """Run the experiment, using the parameters set using :meth:`set`. A "run" consists of calling :meth:`setUp`, :meth:`do`, and :meth:`tearDown`, followed by collecting and storing (and returning) the experiment's results. If running the experiment raises an except...

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43.730159

18.825397

def convert_to_jbig2(pike, jbig2_groups, root, log, options): """Convert images to JBIG2 and insert into PDF. When the JBIG2 page group size is > 1 we do several JBIG2 images at once and build a symbol dictionary that will span several pages. Each JBIG2 image must reference to its symbol dictionary. If...

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45.805556

22.638889

def get_front_page(self, *args, **kwargs): """Return a get_content generator for the front page submissions. Corresponds to the submissions provided by ``https://www.reddit.com/`` for the session. The additional parameters are passed directly into :meth:`.get_content`. Note: th...

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39.545455

23.909091

def accept(self): """accept() -> (socket object, address info) Wait for an incoming connection. Return a new socket representing the connection, and the address of the client. For IP sockets, the address info is a pair (hostaddr, port). """ fd, addr = self._accept() ...

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47.4

20.666667

def get_host_ip(self, env_with_dig='ingi/inginious-c-default'): """ Get the external IP of the host of the docker daemon. Uses OpenDNS internally. :param env_with_dig: any container image that has dig """ try: container = self._docker.containers.create(env_with_dig, c...

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49.666667

26.466667

def get_parser_class(): """ Returns the parser according to the system platform """ global distro if distro == 'Linux': Parser = parser.LinuxParser if not os.path.exists(Parser.get_command()[0]): Parser = parser.UnixIPParser elif distro in ['Darwin', 'MacOSX']: ...

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33.045455

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def register(self, metadata): """ Register a distribution on PyPI, using the provided metadata. :param metadata: A :class:`Metadata` instance defining at least a name and version number for the distribution to be registered. :return: The...

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def get_s3_multipart_chunk_size(filesize): """Returns the chunk size of the S3 multipart object, given a file's size.""" if filesize <= AWS_MAX_MULTIPART_COUNT * AWS_MIN_CHUNK_SIZE: return AWS_MIN_CHUNK_SIZE else: div = filesize // AWS_MAX_MULTIPART_COUNT if div * AWS_MAX_MULTIPART_C...

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def validate(self): """ validates the feature configuration, and returns a list of errors (empty list if no error) validate should: * required variables * warn on unused variables errors should either be reported via self._log_error(), or raise an exception """...

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def get(self, timeout=None): """ Return value on success, or raise exception on failure. """ result = None try: result = self._result.get(True, timeout=timeout) except Empty: raise Timeout() if isinstance(result, Failure): six....

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def acquisition_function(self, x): """ Returns the value of the acquisition function at x. """ return self._penalized_acquisition(x, self.model, self.X_batch, self.r_x0, self.s_x0)

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def generate_lines_for_vocab(tmp_dir, sources, file_byte_budget=1e6): """Generate lines for vocabulary generation.""" tf.logging.info("Generating vocab from: %s", str(sources)) for source in sources: url = source[0] filename = os.path.basename(url) compressed_file = maybe_download(tmp_dir, filename, u...

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def prepare_package(err, path, expectation=0, for_appversions=None, timeout=-1): """Prepares a file-based package for validation. timeout is the number of seconds before validation is aborted. If timeout is -1 then no timeout checking code will run. """ package = None try: ...

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def _real_re_compile(self, *args, **kwargs): """Thunk over to the original re.compile""" try: return re.compile(*args, **kwargs) except re.error as e: # raise ValueError instead of re.error as this gives a # cleaner message to the user. raise Value...

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def __set_lost_start_status(self, hgvs_string): """Sets the self.is_lost_start flag.""" # set is lost start status mymatch = re.search('^([A-Z?])(\d+)([A-Z?])$', hgvs_string) if mymatch: grps = mymatch.groups() if int(grps[1]) == 1 and grps[0] != grps[2]: ...

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def post_fork_child(self, fingerprint, jvm_options, classpath, stdout, stderr): """Post-fork() child callback for ProcessManager.daemon_spawn().""" java = SubprocessExecutor(self._distribution) subproc = java.spawn(classpath=classpath, main='com.martiansoftware.nailgun.NGServer', ...

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def add_defaults(self, ctype: ContentType = None) -> "InstanceNode": """Return the receiver with defaults added recursively to its value. Args: ctype: Content type of the defaults to be added. If it is ``None``, the content type will be the same as receiver's. """ ...

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def page_context(request, site, **criterias): 'Returns the context dictionary for a page view.' try: page = int(request.GET.get('page', 1)) except ValueError: page = 1 feed, tag = criterias.get('feed'), criterias.get('tag') if feed: try: feed = models.Feed.objects.get(pk=feed) except ObjectDoesNotExist: raise...

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def clear_terminal(self): """Reimplement ShellBaseWidget method""" self.clear() self.new_prompt(self.interpreter.p2 if self.interpreter.more else self.interpreter.p1)

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47.5

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def timeit(hosts=None, stmt=None, warmup=30, repeat=None, duration=None, concurrency=1, output_fmt=None, fail_if=None, sample_mode='reservoir'): """Run the given statement a number of times and return the runtime stats Args...

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def process(self, metric): """ Queue a metric. Flushing queue if batch size reached """ if self._match_metric(metric): self.metrics.append(metric) if self.should_flush(): self._send()

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def get_main_chain_layers(self): """Return a list of layer IDs in the main chain.""" main_chain = self.get_main_chain() ret = [] for u in main_chain: for v, layer_id in self.adj_list[u]: if v in main_chain and u in main_chain: ret.append(la...

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def vote_least_worst(candidates, votes, n_winners): """Select "least worst" artifact as the winner of the vote. Least worst artifact is the artifact with the best worst evaluation, i.e. its worst evaluation is the best among all of the artifacts. Ties are resolved randomly. :param candidates: All...

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def get_year(self): """ Return the year from the database in the format expected by the URL. """ year = super(BuildableDayArchiveView, self).get_year() fmt = self.get_year_format() dt = date(int(year), 1, 1) return dt.strftime(fmt)

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def load(self, loc): '''Load a pickled model.''' try: w_td_c = pickle.load(open(loc, 'rb')) except IOError: msg = ("Missing trontagger.pickle file.") raise MissingCorpusError(msg) self.model.weights, self.tagdict, self.classes = w_td_c self.mod...

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def deluser(name, username): ''' Remove a user from the group. CLI Example: .. code-block:: bash salt '*' group.deluser foo bar Removes a member user 'bar' from a group 'foo'. If group is not present then returns True. ''' grp_info = __salt__['group.info'](name) if user...

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def alltoall_ring(xs, devices, split_axis, concat_axis): """MPI alltoall operation. Performance-optimized for a ring of devices. Args: xs: a list of n tf.Tensors devices: a list of n strings split_axis: an integer concat_axis: an integer Returns: a list of n Tensors """ n = len(xs) ...

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def unicode_csv_reader(unicode_csv_data, **kwargs): """Since the standard csv library does not handle unicode in Python 2, we need a wrapper. Borrowed and slightly modified from the Python docs: https://docs.python.org/2/library/csv.html#csv-examples""" if six.PY2: # csv.py doesn't do Unicode; e...

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def tcl_add_fileset_file(filename: str): """ :param filename: relative filename with .vhdl or .v :return: add_fileset_file command string """ if filename.endswith(".vhd"): t = "VHDL" elif filename.endswith(".v") or filename.endswith(".sv"): t = "VERILOG" else: raise ...

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def set_hparam(self, name, value): """Set the value of an existing hyperparameter. This function verifies that the type of the value matches the type of the existing hyperparameter. Args: name: Name of the hyperparameter. value: New value of the hyperparameter. Raises: KeyError:...

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def get_all_conversion_chains_from_type(self, from_type: Type[Any]) \ -> Tuple[List[Converter], List[Converter], List[Converter]]: """ Utility method to find all converters from a given type. :param from_type: :return: """ return self.get_all_conversion_chain...

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def read(path, saltenv='base'): ''' Read the contents of a text file, if the file is binary then ''' # Return a dict of paths + content ret = [] files = find(path, saltenv) for fn_ in files: full = next(six.iterkeys(fn_)) form = fn_[full] if form == 'txt': ...

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def _alert_malformed(self, msg, row_num): """ Alert a user about a malformed row. If `self.error_bad_lines` is True, the alert will be `ParserError`. If `self.warn_bad_lines` is True, the alert will be printed out. Parameters ---------- msg : The error message t...

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