kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def number_arg(ctx, obj): ''' Handles LiteralObjects as well as computable arguments ''' if hasattr(obj, 'compute'): obj = next(obj.compute(ctx), False) return to_number(obj)	[ "def", "number_arg", "(", "ctx", ",", "obj", ")", ":", "if", "hasattr", "(", "obj", ",", "'compute'", ")", ":", "obj", "=", "next", "(", "obj", ".", "compute", "(", "ctx", ")", ",", "False", ")", "return", "to_number", "(", "obj", ")" ]	28	18
def process(in_path, annot_beats=False, feature="mfcc", framesync=False, boundaries_id="gt", labels_id=None, n_jobs=4, config=None): """Sweeps parameters across the specified algorithm.""" results_file = "results_sweep_boundsE%s_labelsE%s.csv" % (boundaries_id, ...	[ "def", "process", "(", "in_path", ",", "annot_beats", "=", "False", ",", "feature", "=", "\"mfcc\"", ",", "framesync", "=", "False", ",", "boundaries_id", "=", "\"gt\"", ",", "labels_id", "=", "None", ",", "n_jobs", "=", "4", ",", "config", "=", "None", ...	46.092784	20.639175
def fetch(self): """Fetch the data for the model from Redis and assign the values. :rtype: bool """ raw = yield gen.Task(self._redis_client.get, self._key) if raw: self.loads(base64.b64decode(raw)) raise gen.Return(True) raise gen.Return(False)	[ "def", "fetch", "(", "self", ")", ":", "raw", "=", "yield", "gen", ".", "Task", "(", "self", ".", "_redis_client", ".", "get", ",", "self", ".", "_key", ")", "if", "raw", ":", "self", ".", "loads", "(", "base64", ".", "b64decode", "(", "raw", ")"...	28	17.454545
def _connect(self): """ Connect to the graphite server """ if (self.proto == 'udp'): stream = socket.SOCK_DGRAM else: stream = socket.SOCK_STREAM if (self.proto[-1] == '4'): family = socket.AF_INET connection_struct = (self...	[ "def", "_connect", "(", "self", ")", ":", "if", "(", "self", ".", "proto", "==", "'udp'", ")", ":", "stream", "=", "socket", ".", "SOCK_DGRAM", "else", ":", "stream", "=", "socket", ".", "SOCK_STREAM", "if", "(", "self", ".", "proto", "[", "-", "1"...	40.910448	16.880597
def RqueryBM(query_filter,query_items,query_attributes,dataset,database,host=rbiomart_host): """ Queries BioMart. :param query_filtery: one BioMart filter associated with the items being queried :param query_items: list of items to be queried (must assoiate with given filter) :param query_attribute...	[ "def", "RqueryBM", "(", "query_filter", ",", "query_items", ",", "query_attributes", ",", "dataset", ",", "database", ",", "host", "=", "rbiomart_host", ")", ":", "biomaRt", "=", "importr", "(", "\"biomaRt\"", ")", "ensemblMart", "=", "biomaRt", ".", "useMart"...	42.956522	25.565217
def _transform_item(self, content_metadata_item): """ Transform the provided content metadata item to the schema expected by the integrated channel. """ content_metadata_type = content_metadata_item['content_type'] transformed_item = {} for integrated_channel_schema_key, ...	[ "def", "_transform_item", "(", "self", ",", "content_metadata_item", ")", ":", "content_metadata_type", "=", "content_metadata_item", "[", "'content_type'", "]", "transformed_item", "=", "{", "}", "for", "integrated_channel_schema_key", ",", "edx_data_schema_key", "in", ...	46.478261	24.434783
def visit_dictcomp(self, node, parent): """visit a DictComp node by returning a fresh instance of it""" newnode = nodes.DictComp(node.lineno, node.col_offset, parent) newnode.postinit( self.visit(node.key, newnode), self.visit(node.value, newnode), [self.visit...	[ "def", "visit_dictcomp", "(", "self", ",", "node", ",", "parent", ")", ":", "newnode", "=", "nodes", ".", "DictComp", "(", "node", ".", "lineno", ",", "node", ".", "col_offset", ",", "parent", ")", "newnode", ".", "postinit", "(", "self", ".", "visit",...	43.555556	14.555556
def get(self, number): """ Return a pattern for a number. @param number (int) Number of pattern @return (set) Indices of on bits """ if not number in self._patterns: raise IndexError("Invalid number") return self._patterns[number]	[ "def", "get", "(", "self", ",", "number", ")", ":", "if", "not", "number", "in", "self", ".", "_patterns", ":", "raise", "IndexError", "(", "\"Invalid number\"", ")", "return", "self", ".", "_patterns", "[", "number", "]" ]	21.333333	13.333333
def command(state, args): """Watch an anime.""" if len(args) < 2: print(f'Usage: {args[0]} {{ID\|aid:AID}} [EPISODE]') return aid = state.results.parse_aid(args[1], default_key='db') anime = query.select.lookup(state.db, aid) if len(args) < 3: episode = anime.watched_episodes ...	[ "def", "command", "(", "state", ",", "args", ")", ":", "if", "len", "(", "args", ")", "<", "2", ":", "print", "(", "f'Usage: {args[0]} {{ID\|aid:AID}} [EPISODE]'", ")", "return", "aid", "=", "state", ".", "results", ".", "parse_aid", "(", "args", "[", "1"...	32.296296	16.407407
def _find_path(start, end, path=tuple()): """Return the path from start to end. If no path exists, return None. """ path = path + (start, ) if start is end: return path else: ret = None if start.lo is not None: ret = _find_path(start.lo, end, path) if...	[ "def", "_find_path", "(", "start", ",", "end", ",", "path", "=", "tuple", "(", ")", ")", ":", "path", "=", "path", "+", "(", "start", ",", ")", "if", "start", "is", "end", ":", "return", "path", "else", ":", "ret", "=", "None", "if", "start", "...	27.533333	13.933333
def iterate(self, max_number_of_files=None): """iterate([max_number_of_files]) -> image, bounding_boxes, image_file Yields the image and the bounding boxes stored in the training set as an iterator. This function loads the images and converts them to gray-scale. It yields the image, the list of boundi...	[ "def", "iterate", "(", "self", ",", "max_number_of_files", "=", "None", ")", ":", "indices", "=", "quasi_random_indices", "(", "len", "(", "self", ")", ",", "max_number_of_files", ")", "for", "index", "in", "indices", ":", "image", "=", "bob", ".", "io", ...	39.548387	26.290323
def rhymes(word): """Get words rhyming with a given word. This function may return an empty list if no rhyming words are found in the dictionary, or if the word you pass to the function is itself not found in the dictionary. .. doctest:: >>> import pronouncing >>> pronouncing.rhym...	[ "def", "rhymes", "(", "word", ")", ":", "phones", "=", "phones_for_word", "(", "word", ")", "combined_rhymes", "=", "[", "]", "if", "phones", ":", "for", "element", "in", "phones", ":", "combined_rhymes", ".", "append", "(", "[", "w", "for", "w", "in",...	33.259259	21.333333
def setCurrentQuery(self, query): """ Sets the query for the current container widget. This will only change the active container, not parent containers. You should use the setQuery method to completely assign a query to this widget. :param query \| <orb.Quer...	[ "def", "setCurrentQuery", "(", "self", ",", "query", ")", ":", "container", "=", "self", ".", "currentContainer", "(", ")", "if", "container", ":", "container", ".", "setQuery", "(", "query", ")" ]	39.272727	14.909091
def element_tree_oai_records(tree, header_subs=None): """Take an ElementTree and converts the nodes into BibRecord records. This expects a clean OAI response with the tree root as ListRecords or GetRecord and record as the subtag like so: <ListRecords\|GetRecord> <record> <header> ...	[ "def", "element_tree_oai_records", "(", "tree", ",", "header_subs", "=", "None", ")", ":", "from", ".", "bibrecord", "import", "record_add_field", ",", "create_record", "if", "not", "header_subs", ":", "header_subs", "=", "[", "]", "# Make it a tuple, this informati...	36.566667	18.2
def get_page_object_by_name(context, name): """ Arguments ``name` name for object selection :return selected object """ selected_object = None try: for obj_type in context['page']['content']: for obj in context['page']['content'][obj_type]: ...	[ "def", "get_page_object_by_name", "(", "context", ",", "name", ")", ":", "selected_object", "=", "None", "try", ":", "for", "obj_type", "in", "context", "[", "'page'", "]", "[", "'content'", "]", ":", "for", "obj", "in", "context", "[", "'page'", "]", "[...	27.807692	16.038462
def init_validator(required, cls, *additional_validators): """ Create an attrs validator based on the cls provided and required setting. :param bool required: whether the field is required in a given model. :param cls: the expected class type of object value. :return: attrs validator chained correct...	[ "def", "init_validator", "(", "required", ",", "cls", ",", "*", "additional_validators", ")", ":", "validator", "=", "validators", ".", "instance_of", "(", "cls", ")", "if", "additional_validators", ":", "additional_validators", "=", "list", "(", "additional_valid...	43.466667	20
def mremove(self, class_name, names): """ Removes multiple components from the network. Removes them from component DataFrames. Parameters ---------- class_name : string Component class name name : list-like Component names Examp...	[ "def", "mremove", "(", "self", ",", "class_name", ",", "names", ")", ":", "if", "class_name", "not", "in", "self", ".", "components", ":", "logger", ".", "error", "(", "\"Component class {} not found\"", ".", "format", "(", "class_name", ")", ")", "return", ...	24.470588	20.470588
def closeContentsWidget( self ): """ Closes the current contents widget. """ widget = self.currentContentsWidget() if ( not widget ): return widget.close() widget.setParent(None) widget.deleteLater()	[ "def", "closeContentsWidget", "(", "self", ")", ":", "widget", "=", "self", ".", "currentContentsWidget", "(", ")", "if", "(", "not", "widget", ")", ":", "return", "widget", ".", "close", "(", ")", "widget", ".", "setParent", "(", "None", ")", "widget", ...	26.181818	10.545455
def to(self, target: typing.Union[types.Message, types.Chat, types.base.Integer, types.base.String]): """ Send to chat :param target: message or chat or id :return: """ if isinstance(target, types.Message): chat_id = target.chat.id elif isinstance(tar...	[ "def", "to", "(", "self", ",", "target", ":", "typing", ".", "Union", "[", "types", ".", "Message", ",", "types", ".", "Chat", ",", "types", ".", "base", ".", "Integer", ",", "types", ".", "base", ".", "String", "]", ")", ":", "if", "isinstance", ...	31.777778	16.888889
def _generate_url(self, regex, arguments): """ Uses the regex (of the type defined in Django's url patterns) and the arguments to return a relative URL For example, if the regex is '^/api/shreddr/job/(?P<id>[\d]+)$' and arguments is ['23'] then return would be '/api/shreddr/job/23' ...	[ "def", "_generate_url", "(", "self", ",", "regex", ",", "arguments", ")", ":", "regex_tokens", "=", "_split_regex", "(", "regex", ")", "result", "=", "''", "for", "i", "in", "range", "(", "len", "(", "arguments", ")", ")", ":", "result", "=", "result",...	45.846154	16.923077
def visualRect(self, index): """ Returns the visual rectangle for the inputed index. :param index \| <QModelIndex> :return <QtCore.QRect> """ rect = super(XTreeWidget, self).visualRect(index) item = self.itemFromIndex(index) ...	[ "def", "visualRect", "(", "self", ",", "index", ")", ":", "rect", "=", "super", "(", "XTreeWidget", ",", "self", ")", ".", "visualRect", "(", "index", ")", "item", "=", "self", ".", "itemFromIndex", "(", "index", ")", "if", "not", "rect", ".", "isNul...	35.1875	14.0625
def clear_commentarea_cache(comment): """ Clean the plugin output cache of a rendered plugin. """ parent = comment.content_object for instance in CommentsAreaItem.objects.parent(parent): instance.clear_cache()	[ "def", "clear_commentarea_cache", "(", "comment", ")", ":", "parent", "=", "comment", ".", "content_object", "for", "instance", "in", "CommentsAreaItem", ".", "objects", ".", "parent", "(", "parent", ")", ":", "instance", ".", "clear_cache", "(", ")" ]	33	7.571429
def _verify_any(self): """ Verify that an initial request has been made, or failing that, that the request is in the session :raises: LTIException """ log.debug('verify_any enter') # Check to see if there is a new LTI launch request incoming newrequest = ...	[ "def", "_verify_any", "(", "self", ")", ":", "log", ".", "debug", "(", "'verify_any enter'", ")", "# Check to see if there is a new LTI launch request incoming", "newrequest", "=", "False", "if", "flask_request", ".", "method", "==", "'POST'", ":", "params", "=", "f...	37.37037	13.888889
def bs_values_df(run_list, estimator_list, estimator_names, n_simulate, **kwargs): """Computes a data frame of bootstrap resampled values. Parameters ---------- run_list: list of dicts List of nested sampling run dicts. estimator_list: list of functions Estimators t...	[ "def", "bs_values_df", "(", "run_list", ",", "estimator_list", ",", "estimator_names", ",", "n_simulate", ",", "", "", "kwargs", ")", ":", "tqdm_kwargs", "=", "kwargs", ".", "pop", "(", "'tqdm_kwargs'", ",", "{", "'desc'", ":", "'bs values'", "}", ")", "...	40.833333	18.309524
def get(self, key=NOT_SET, index=NOT_SET, d=None): """Return value with given key or index. If no value is found, return d (None by default). """ if index is NOT_SET and key is not NOT_SET: try: index, value = self._dict[key] except KeyError: return d else: return value elif index is not...	[ "def", "get", "(", "self", ",", "key", "=", "NOT_SET", ",", "index", "=", "NOT_SET", ",", "d", "=", "None", ")", ":", "if", "index", "is", "NOT_SET", "and", "key", "is", "not", "NOT_SET", ":", "try", ":", "index", ",", "value", "=", "self", ".", ...	22.285714	19.285714
def setup_menus(): '''setup console menus''' menu = MPMenuTop([]) menu.add(MPMenuSubMenu('MAVExplorer', items=[MPMenuItem('Settings', 'Settings', 'menuSettings'), MPMenuItem('Map', 'Map', '# map'), MPMenuItem('Sav...	[ "def", "setup_menus", "(", ")", ":", "menu", "=", "MPMenuTop", "(", "[", "]", ")", "menu", ".", "add", "(", "MPMenuSubMenu", "(", "'MAVExplorer'", ",", "items", "=", "[", "MPMenuItem", "(", "'Settings'", ",", "'Settings'", ",", "'menuSettings'", ")", ","...	47.5	24.5
def data_item(self) -> DataItem: """Return the data item associated with this display panel. .. versionadded:: 1.0 Scriptable: Yes """ display_panel = self.__display_panel if not display_panel: return None data_item = display_panel.data_item ...	[ "def", "data_item", "(", "self", ")", "->", "DataItem", ":", "display_panel", "=", "self", ".", "__display_panel", "if", "not", "display_panel", ":", "return", "None", "data_item", "=", "display_panel", ".", "data_item", "return", "DataItem", "(", "data_item", ...	29.833333	14
def safe_import_module(module_name): """ Like :func:`importlib.import_module`, except it does not raise ``ImportError`` if the requested ``module_name`` was not found. """ try: return import_module(module_name) except ImportError as e: m = re.match(r"No module named '([\w\.]+)'",...	[ "def", "safe_import_module", "(", "module_name", ")", ":", "try", ":", "return", "import_module", "(", "module_name", ")", "except", "ImportError", "as", "e", ":", "m", "=", "re", ".", "match", "(", "r\"No module named '([\\w\\.]+)'\"", ",", "str", "(", "e", ...	36.181818	14.727273
def binned_pixelrange(self, waverange, **kwargs): """Calculate the number of pixels within the given wavelength range and `binset`. Parameters ---------- waverange : tuple of float or `~astropy.units.quantity.Quantity` Lower and upper limits of the desired wavelength...	[ "def", "binned_pixelrange", "(", "self", ",", "waverange", ",", "", "", "kwargs", ")", ":", "x", "=", "units", ".", "validate_quantity", "(", "waverange", ",", "self", ".", "_internal_wave_unit", ",", "equivalencies", "=", "u", ".", "spectral", "(", ")",...	33.590909	22.954545
def sendmail(self, msg_from, msg_to, msg): """Remember the recipients.""" SMTP_dummy.msg_from = msg_from SMTP_dummy.msg_to = msg_to SMTP_dummy.msg = msg	[ "def", "sendmail", "(", "self", ",", "msg_from", ",", "msg_to", ",", "msg", ")", ":", "SMTP_dummy", ".", "msg_from", "=", "msg_from", "SMTP_dummy", ".", "msg_to", "=", "msg_to", "SMTP_dummy", ".", "msg", "=", "msg" ]	36	4.4
def format_python2_stmts(python_stmts, show_tokens=False, showast=False, showgrammar=False, compile_mode='exec'): """ formats python2 statements """ parser_debug = {'rules': False, 'transition': False, 'reduce': showgrammar, 'errorstack':...	[ "def", "format_python2_stmts", "(", "python_stmts", ",", "show_tokens", "=", "False", ",", "showast", "=", "False", ",", "showgrammar", "=", "False", ",", "compile_mode", "=", "'exec'", ")", ":", "parser_debug", "=", "{", "'rules'", ":", "False", ",", "'tran...	34.227273	21.590909
def _addsub_int_array(self, other, op): """ Add or subtract array-like of integers equivalent to applying `_time_shift` pointwise. Parameters ---------- other : Index, ExtensionArray, np.ndarray integer-dtype op : {operator.add, operator.sub} ...	[ "def", "_addsub_int_array", "(", "self", ",", "other", ",", "op", ")", ":", "# _addsub_int_array is overriden by PeriodArray", "assert", "not", "is_period_dtype", "(", "self", ")", "assert", "op", "in", "[", "operator", ".", "add", ",", "operator", ".", "sub", ...	31.75	16.25
def showtraceback(self, args, *kwargs): """Display the exception that just occurred. We remove the first stack item because it is our own code. The output is written by self.write(), below. """ try: type, value, tb = sys.exc_info() sys.last_type = typ...	[ "def", "showtraceback", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "try", ":", "type", ",", "value", ",", "tb", "=", "sys", ".", "exc_info", "(", ")", "sys", ".", "last_type", "=", "type", "sys", ".", "last_value", "=", "va...	33.590909	16.727273
def prefix_all(self, prefix='#', *lines): """ Same as :func:`~prefix`, for multiple lines. :param prefix: Dockerfile command to use, e.g. ``ENV`` or ``RUN``. :type prefix: unicode \| str :param lines: Lines with arguments to be prefixed. :type lines: collections.Iterable[...	[ "def", "prefix_all", "(", "self", ",", "prefix", "=", "'#'", ",", "*", "lines", ")", ":", "for", "line", "in", "lines", ":", "if", "isinstance", "(", "line", ",", "(", "tuple", ",", "list", ")", ")", ":", "self", ".", "prefix", "(", "prefix", ","...	35.0625	12.6875
def __process_parameter(self, param_name, param_type, ancestry=None): """Collect values for a given web service operation input parameter.""" assert self.active() param_optional = param_type.optional() has_argument, value = self.__get_param_value(param_name) if has_argument: ...	[ "def", "__process_parameter", "(", "self", ",", "param_name", ",", "param_type", ",", "ancestry", "=", "None", ")", ":", "assert", "self", ".", "active", "(", ")", "param_optional", "=", "param_type", ".", "optional", "(", ")", "has_argument", ",", "value", ...	53.727273	15.454545
def list_symbols(self, all_symbols=False, snapshot=None, regex=None, **kwargs): """ Return the symbols in this library. Parameters ---------- all_symbols : `bool` If True returns all symbols under all snapshots, even if the symbol has been deleted in the ...	[ "def", "list_symbols", "(", "self", ",", "all_symbols", "=", "False", ",", "snapshot", "=", "None", ",", "regex", "=", "None", ",", "", "", "kwargs", ")", ":", "query", "=", "{", "}", "if", "regex", "is", "not", "None", ":", "query", "[", "'symbo...	46.071429	26.928571
def grey_transmittance(extinction_coefficient, molar_density, length, base=e): r'''Calculates the transmittance of a grey body, given the extinction coefficient of the material, its molar density, and the path length of the radiation. .. math:: \tau = base^{(-\epsilon \cdot l\cdot \rho_m )...	[ "def", "grey_transmittance", "(", "extinction_coefficient", ",", "molar_density", ",", "length", ",", "base", "=", "e", ")", ":", "transmittance", "=", "molar_density", "", "extinction_coefficient", "", "length", "return", "base", "**", "(", "-", "transmittance"...	37.392157	27.117647
def set_sticker_position_in_set(self, sticker, position): """ Use this method to move a sticker in a set created by the bot to a specific position . Returns True on success. :param sticker: :param position: :return: """ return apihelper.set_sticker_position_in_set...	[ "def", "set_sticker_position_in_set", "(", "self", ",", "sticker", ",", "position", ")", ":", "return", "apihelper", ".", "set_sticker_position_in_set", "(", "self", ".", "token", ",", "sticker", ",", "position", ")" ]	43	24.5
def changes(since, out_file, eager): """Show changes since a specific date.""" root = get_root() history_data = defaultdict(lambda: {'lines': deque(), 'releasers': set()}) with chdir(root): result = run_command( ( 'git log "--pretty=format:%H %s" --date-order --date=...	[ "def", "changes", "(", "since", ",", "out_file", ",", "eager", ")", ":", "root", "=", "get_root", "(", ")", "history_data", "=", "defaultdict", "(", "lambda", ":", "{", "'lines'", ":", "deque", "(", ")", ",", "'releasers'", ":", "set", "(", ")", "}",...	36.343137	21
def parse(self, request): """Parse incoming request and return an email instance. Args: request: an HttpRequest object, containing the forwarded email, as per the SendGrid specification for inbound emails. Returns: an EmailMultiAlternatives instance, con...	[ "def", "parse", "(", "self", ",", "request", ")", ":", "assert", "isinstance", "(", "request", ",", "HttpRequest", ")", ",", "\"Invalid request type: %s\"", "%", "type", "(", "request", ")", "try", ":", "# from_email should never be a list (unless we change our API)",...	38.797101	24.014493
def move_roles(self, roles): """ Moves roles to this role config group. The roles can be moved from any role config group belonging to the same service. The role type of the destination group must match the role type of the roles. @param roles: The names of the roles to move. @return: List...	[ "def", "move_roles", "(", "self", ",", "roles", ")", ":", "return", "move_roles", "(", "self", ".", "_get_resource_root", "(", ")", ",", "self", ".", "serviceRef", ".", "serviceName", ",", "self", ".", "name", ",", "roles", ",", "self", ".", "serviceRef"...	38	17.230769
def _set_defaults(self): """ Set configuration parameters for drawing guide """ valid_locations = {'top', 'bottom', 'left', 'right'} horizontal_locations = {'left', 'right'} get_property = self.theme.themeables.property margin_location_lookup = {'t': 'b', 'b': 't'...	[ "def", "_set_defaults", "(", "self", ")", ":", "valid_locations", "=", "{", "'top'", ",", "'bottom'", ",", "'left'", ",", "'right'", "}", "horizontal_locations", "=", "{", "'left'", ",", "'right'", "}", "get_property", "=", "self", ".", "theme", ".", "them...	34.426966	17.078652
def image_get(fingerprint, remote_addr=None, cert=None, key=None, verify_cert=True, _raw=False): ''' Get an image by its fingerprint fingerprint : The fingerprint of the image to retrieve remote_addr : An...	[ "def", "image_get", "(", "fingerprint", ",", "remote_addr", "=", "None", ",", "cert", "=", "None", ",", "key", "=", "None", ",", "verify_cert", "=", "True", ",", "_raw", "=", "False", ")", ":", "client", "=", "pylxd_client_get", "(", "remote_addr", ",", ...	25.491525	22.033898
def equals(self, other): """Field-based equality for SSAEvents.""" if isinstance(other, SSAEvent): return self.as_dict() == other.as_dict() else: raise TypeError("Cannot compare to non-SSAEvent object")	[ "def", "equals", "(", "self", ",", "other", ")", ":", "if", "isinstance", "(", "other", ",", "SSAEvent", ")", ":", "return", "self", ".", "as_dict", "(", ")", "==", "other", ".", "as_dict", "(", ")", "else", ":", "raise", "TypeError", "(", "\"Cannot ...	40.833333	14
def stringify(self, string, phrases, parent=None): """ Stringifies phrases. After parsing of the string via self.parse(), this method takes the escaped string and the list of phrases returned by self.parse() and replaces the original phrases (with tags) with the Phrase-objects in the list and adds the app...	[ "def", "stringify", "(", "self", ",", "string", ",", "phrases", ",", "parent", "=", "None", ")", ":", "last_tag", "=", "0", "beauty", "=", "\"\"", "for", "phrase", "in", "phrases", ":", "beauty", "+=", "string", "[", "last_tag", ":", "phrase", ".", "...	28.365854	23.02439
def new_metric(self, meta): """ Create and register metric, find subscribers for this metric (using meta as filter) and subscribe Return: metric (available_metrics[0]): one of Metric """ type_ = meta.get('type') if not type_: raise ValueEr...	[ "def", "new_metric", "(", "self", ",", "meta", ")", ":", "type_", "=", "meta", ".", "get", "(", "'type'", ")", "if", "not", "type_", ":", "raise", "ValueError", "(", "'Metric type should be defined.'", ")", "if", "type_", "in", "available_metrics", ":", "m...	51.53125	29.15625
def update_monitor(self): """Update the monitor and monitor status from the ZM server.""" result = self._client.get_state(self._monitor_url) self._raw_result = result['monitor']	[ "def", "update_monitor", "(", "self", ")", ":", "result", "=", "self", ".", "_client", ".", "get_state", "(", "self", ".", "_monitor_url", ")", "self", ".", "_raw_result", "=", "result", "[", "'monitor'", "]" ]	49.5	9.25
def emit(self, span_datas): """ :type span_datas: list of :class: `~opencensus.trace.span_data.SpanData` :param list of opencensus.trace.span_data.SpanData span_datas: SpanData tuples to emit """ envelopes = [self.span_data_to_envelope(sd) for sd in span_d...	[ "def", "emit", "(", "self", ",", "span_datas", ")", ":", "envelopes", "=", "[", "self", ".", "span_data_to_envelope", "(", "sd", ")", "for", "sd", "in", "span_datas", "]", "result", "=", "self", ".", "_transmit", "(", "envelopes", ")", "if", "result", ...	39	10.818182
def tell(self): """Returns the current position of read head. """ pos = ctypes.c_size_t() check_call(_LIB.MXRecordIOReaderTell(self.handle, ctypes.byref(pos))) return pos.value	[ "def", "tell", "(", "self", ")", ":", "pos", "=", "ctypes", ".", "c_size_t", "(", ")", "check_call", "(", "_LIB", ".", "MXRecordIOReaderTell", "(", "self", ".", "handle", ",", "ctypes", ".", "byref", "(", "pos", ")", ")", ")", "return", "pos", ".", ...	35.166667	14.5
def toplevel(func): """A sync tasklet that sets a fresh default Context. Use this for toplevel view functions such as webapp.RequestHandler.get() or Django view functions. """ synctaskletfunc = synctasklet(func) # wrap at declaration time. @utils.wrapping(func) def add_context_wrapper(args, *kwds): ...	[ "def", "toplevel", "(", "func", ")", ":", "synctaskletfunc", "=", "synctasklet", "(", "func", ")", "# wrap at declaration time.", "@", "utils", ".", "wrapping", "(", "func", ")", "def", "add_context_wrapper", "(", "", "args", ",", "", "*", "kwds", ")", "...	30.869565	14.130435
def try_int(o:Any)->Any: "Try to convert `o` to int, default to `o` if not possible." # NB: single-item rank-1 array/tensor can be converted to int, but we don't want to do this if isinstance(o, (np.ndarray,Tensor)): return o if o.ndim else int(o) if isinstance(o, collections.Sized) or getattr(o,'__arra...	[ "def", "try_int", "(", "o", ":", "Any", ")", "->", "Any", ":", "# NB: single-item rank-1 array/tensor can be converted to int, but we don't want to do this", "if", "isinstance", "(", "o", ",", "(", "np", ".", "ndarray", ",", "Tensor", ")", ")", ":", "return", "o",...	55.571429	31
def get_requires(self, requires_types): """Extracts requires of given types from metadata file, filter windows specific requires. """ if not isinstance(requires_types, list): requires_types = list(requires_types) extracted_requires = [] for requires_name in re...	[ "def", "get_requires", "(", "self", ",", "requires_types", ")", ":", "if", "not", "isinstance", "(", "requires_types", ",", "list", ")", ":", "requires_types", "=", "list", "(", "requires_types", ")", "extracted_requires", "=", "[", "]", "for", "requires_name"...	44.615385	10.538462
def pop_rule_nodes(self) -> bool: """Pop context variable that store rule nodes""" self.rule_nodes = self.rule_nodes.parents self.tag_cache = self.tag_cache.parents self.id_cache = self.id_cache.parents return True	[ "def", "pop_rule_nodes", "(", "self", ")", "->", "bool", ":", "self", ".", "rule_nodes", "=", "self", ".", "rule_nodes", ".", "parents", "self", ".", "tag_cache", "=", "self", ".", "tag_cache", ".", "parents", "self", ".", "id_cache", "=", "self", ".", ...	41.5	8.166667
def earthsun_distance(unixtime, delta_t, numthreads): """ Calculates the distance from the earth to the sun using the NREL SPA algorithm described in [1]. Parameters ---------- unixtime : numpy array Array of unix/epoch timestamps to calculate solar position for. Unixtime is the...	[ "def", "earthsun_distance", "(", "unixtime", ",", "delta_t", ",", "numthreads", ")", ":", "R", "=", "solar_position", "(", "unixtime", ",", "0", ",", "0", ",", "0", ",", "0", ",", "0", ",", "delta_t", ",", "0", ",", "numthreads", ",", "esd", "=", "...	31.5	24.1875
def get_named_tensor(self, name): """ Returns a named tensor if available. Returns: valid: True if named tensor found, False otherwise tensor: If valid, will be a tensor, otherwise None """ if name in self.named_tensors: return True, self.name...	[ "def", "get_named_tensor", "(", "self", ",", "name", ")", ":", "if", "name", "in", "self", ".", "named_tensors", ":", "return", "True", ",", "self", ".", "named_tensors", "[", "name", "]", "else", ":", "return", "False", ",", "None" ]	30.75	13.916667
def get_id_attr(self, value): """Check if value has id attribute and return it. :param value: The value to get id from. :return: The value.id. """ if not hasattr(value, "id") and hasattr(value, "value"): value = value.value return value.id	[ "def", "get_id_attr", "(", "self", ",", "value", ")", ":", "if", "not", "hasattr", "(", "value", ",", "\"id\"", ")", "and", "hasattr", "(", "value", ",", "\"value\"", ")", ":", "value", "=", "value", ".", "value", "return", "value", ".", "id" ]	32.444444	13.111111
def roundedSpecClass(self): """ Spectral class with rounded class number ie A8.5V is A9 """ try: classnumber = str(int(np.around(self.classNumber))) except TypeError: classnumber = str(self.classNumber) return self.classLetter + classnumber	[ "def", "roundedSpecClass", "(", "self", ")", ":", "try", ":", "classnumber", "=", "str", "(", "int", "(", "np", ".", "around", "(", "self", ".", "classNumber", ")", ")", ")", "except", "TypeError", ":", "classnumber", "=", "str", "(", "self", ".", "c...	36.25	16.375
def open_image(fn): """ Opens an image using OpenCV given the file path. Arguments: fn: the file path of the image Returns: The image in RGB format as numpy array of floats normalized to range between 0.0 - 1.0 """ flags = cv2.IMREAD_UNCHANGED+cv2.IMREAD_ANYDEPTH+cv2.IMREAD_ANYCOLO...	[ "def", "open_image", "(", "fn", ")", ":", "flags", "=", "cv2", ".", "IMREAD_UNCHANGED", "+", "cv2", ".", "IMREAD_ANYDEPTH", "+", "cv2", ".", "IMREAD_ANYCOLOR", "if", "not", "os", ".", "path", ".", "exists", "(", "fn", ")", "and", "not", "str", "(", "...	46.769231	23.820513
def pad_to_multiple(self, factor): """ Pad the pianoroll with zeros at the end along the time axis with the minimum length that makes the resulting pianoroll length a multiple of `factor`. Parameters ---------- factor : int The value which the length ...	[ "def", "pad_to_multiple", "(", "self", ",", "factor", ")", ":", "remainder", "=", "self", ".", "pianoroll", ".", "shape", "[", "0", "]", "%", "factor", "if", "remainder", ":", "pad_width", "=", "(", "(", "0", ",", "(", "factor", "-", "remainder", ")"...	34.588235	22.235294
def setup_config( config_directories=None, config_file=None, default_filename="opentc.yml" ): """Setup configuration """ config_found = False config_file_path = None if config_file: config_file_path = config_file if os.path.isfile(config_file_path) and os.acc...	[ "def", "setup_config", "(", "config_directories", "=", "None", ",", "config_file", "=", "None", ",", "default_filename", "=", "\"opentc.yml\"", ")", ":", "config_found", "=", "False", "config_file_path", "=", "None", "if", "config_file", ":", "config_file_path", "...	31.689655	18.206897
def best_motif_in_cluster(single_pwm, clus_pwm, clusters, fg_fa, background, stats=None, metrics=("roc_auc", "recall_at_fdr")): """Return the best motif per cluster for a clustering results. The motif can be either the average motif or one of the clustered motifs. Parameters ---------- single_pwm ...	[ "def", "best_motif_in_cluster", "(", "single_pwm", ",", "clus_pwm", ",", "clusters", ",", "fg_fa", ",", "background", ",", "stats", "=", "None", ",", "metrics", "=", "(", "\"roc_auc\"", ",", "\"recall_at_fdr\"", ")", ")", ":", "# combine original and clustered mot...	30.625	21.055556
def _listify(collection): """This is a workaround where Collections are no longer iterable when using JPype.""" new_list = [] for index in range(len(collection)): new_list.append(collection[index]) return new_list	[ "def", "_listify", "(", "collection", ")", ":", "new_list", "=", "[", "]", "for", "index", "in", "range", "(", "len", "(", "collection", ")", ")", ":", "new_list", ".", "append", "(", "collection", "[", "index", "]", ")", "return", "new_list" ]	37	8.714286
def add_module_plugin_filters(self, module_plugin_filters): """ Adds `module_plugin_filters` to the internal module filters. May be a single object or an iterable. Every module filters must be a callable and take in a list of plugins and their associated names. """ ...	[ "def", "add_module_plugin_filters", "(", "self", ",", "module_plugin_filters", ")", ":", "module_plugin_filters", "=", "util", ".", "return_list", "(", "module_plugin_filters", ")", "self", ".", "module_plugin_filters", ".", "extend", "(", "module_plugin_filters", ")" ]	44.2	18
def get_data(self, data_split="train"): """ Get specified split of data. """ if data_split == 'train': return self._current_train_set elif data_split == 'valid': return self._current_valid_set elif data_split == 'test': return self._cur...	[ "def", "get_data", "(", "self", ",", "data_split", "=", "\"train\"", ")", ":", "if", "data_split", "==", "'train'", ":", "return", "self", ".", "_current_train_set", "elif", "data_split", "==", "'valid'", ":", "return", "self", ".", "_current_valid_set", "elif...	30	6
def _json_path_search(self, json_dict, expr): """ Scan JSON dictionary with using json-path passed sting of the format of $.element..element1[index] etc. Args:\n _json_dict_ - JSON dictionary;\n _expr_ - string of fuzzy search for items within the directory;\n *Return...	[ "def", "_json_path_search", "(", "self", ",", "json_dict", ",", "expr", ")", ":", "path", "=", "parse", "(", "expr", ")", "results", "=", "path", ".", "find", "(", "json_dict", ")", "if", "len", "(", "results", ")", "is", "0", ":", "raise", "JsonVali...	35.68	24.8
def add_job(self, id, func, **kwargs): """ Add the given job to the job list and wakes up the scheduler if it's already running. :param str id: explicit identifier for the job (for modifying it later) :param func: callable (or a textual reference to one) to run at the given time ...	[ "def", "add_job", "(", "self", ",", "id", ",", "func", ",", "", "", "kwargs", ")", ":", "job_def", "=", "dict", "(", "kwargs", ")", "job_def", "[", "'id'", "]", "=", "id", "job_def", "[", "'func'", "]", "=", "func", "job_def", "[", "'name'", "]...	33.25	22.875
def createGraph(self, name, createCollections = True, isSmart = False, numberOfShards = None, smartGraphAttribute = None) : """Creates a graph and returns it. 'name' must be the name of a class inheriting from Graph. Checks will be performed to make sure that every collection mentionned in the edges def...	[ "def", "createGraph", "(", "self", ",", "name", ",", "createCollections", "=", "True", ",", "isSmart", "=", "False", ",", "numberOfShards", "=", "None", ",", "smartGraphAttribute", "=", "None", ")", ":", "def", "_checkCollectionList", "(", "lst", ")", ":", ...	37.176471	24.294118
def get_upload_path(self, filename): ''' Override this in proxy subclass to customize upload path. Default upload path is :file:`/media/images/<user.id>/<filename>.<ext>` or :file:`/media/images/common/<filename>.<ext>` if user is not set. ``<filename>`` is retur...	[ "def", "get_upload_path", "(", "self", ",", "filename", ")", ":", "user_folder", "=", "str", "(", "self", ".", "user", ".", "pk", ")", "if", "self", ".", "user", "else", "'common'", "root", ",", "ext", "=", "os", ".", "path", ".", "splitext", "(", ...	47.8125	22.6875
def summary(processors, metrics, context): """Print the summary""" # display aggregated metric values on language level def display_header(processors, before='', after=''): """Display the header for the summary results.""" print(before, end=' ') for processor in processors: ...	[ "def", "summary", "(", "processors", ",", "metrics", ",", "context", ")", ":", "# display aggregated metric values on language level", "def", "display_header", "(", "processors", ",", "before", "=", "''", ",", "after", "=", "''", ")", ":", "\"\"\"Display the header ...	34.77193	14.035088
def universal_transformer_encoder(encoder_input, encoder_self_attention_bias, hparams, name="encoder", nonpadding=None, save_weights_to=None, ...	[ "def", "universal_transformer_encoder", "(", "encoder_input", ",", "encoder_self_attention_bias", ",", "hparams", ",", "name", "=", "\"encoder\"", ",", "nonpadding", "=", "None", ",", "save_weights_to", "=", "None", ",", "make_image_summary", "=", "True", ")", ":", ...	40.970149	19.701493
def _mod_run_check(cmd_kwargs, onlyif, unless): ''' Execute the onlyif and unless logic. Return a result dict if: * onlyif failed (onlyif != 0) * unless succeeded (unless == 0) else return True ''' if onlyif: if __salt__['cmd.retcode'](onlyif, **cmd_kwargs) != 0: retu...	[ "def", "_mod_run_check", "(", "cmd_kwargs", ",", "onlyif", ",", "unless", ")", ":", "if", "onlyif", ":", "if", "__salt__", "[", "'cmd.retcode'", "]", "(", "onlyif", ",", "", "", "cmd_kwargs", ")", "!=", "0", ":", "return", "{", "'comment'", ":", "'on...	31.181818	16.818182
def unlock_queue_message(self, queue_name, sequence_number, lock_token): ''' Unlocks a message for processing by other receivers on a given queue. This operation deletes the lock object, causing the message to be unlocked. A message must have first been locked by a receiver befor...	[ "def", "unlock_queue_message", "(", "self", ",", "queue_name", ",", "sequence_number", ",", "lock_token", ")", ":", "_validate_not_none", "(", "'queue_name'", ",", "queue_name", ")", "_validate_not_none", "(", "'sequence_number'", ",", "sequence_number", ")", "_valida...	48.964286	22.392857
def output_stream_http(plugin, initial_streams, external=False, port=0): """Continuously output the stream over HTTP.""" global output if not external: if not args.player: console.exit("The default player (VLC) does not seem to be " "installed. You must specify ...	[ "def", "output_stream_http", "(", "plugin", ",", "initial_streams", ",", "external", "=", "False", ",", "port", "=", "0", ")", ":", "global", "output", "if", "not", "external", ":", "if", "not", "args", ".", "player", ":", "console", ".", "exit", "(", ...	36.857143	20.442857
def create(self, repo_slug=None, key=None, label=None): """ Associate an ssh key with your repo and return it. """ key = '%s' % key repo_slug = repo_slug or self.bitbucket.repo_slug or '' url = self.bitbucket.url('SET_DEPLOY_KEY', username=self.bi...	[ "def", "create", "(", "self", ",", "repo_slug", "=", "None", ",", "key", "=", "None", ",", "label", "=", "None", ")", ":", "key", "=", "'%s'", "%", "key", "repo_slug", "=", "repo_slug", "or", "self", ".", "bitbucket", ".", "repo_slug", "or", "''", ...	48.846154	11.846154
def create_key_pair(self, key_name): """ Create a new key pair for your account. This will create the key pair within the region you are currently connected to. :type key_name: string :param key_name: The name of the new keypair :rtype: :class:`boto.ec2.keypair....	[ "def", "create_key_pair", "(", "self", ",", "key_name", ")", ":", "params", "=", "{", "'KeyName'", ":", "key_name", "}", "return", "self", ".", "get_object", "(", "'CreateKeyPair'", ",", "params", ",", "KeyPair", ",", "verb", "=", "'POST'", ")" ]	41	17.375
def to_graphviz(booster, fmap='', num_trees=0, rankdir='UT', yes_color='#0000FF', no_color='#FF0000', condition_node_params=None, leaf_node_params=None, **kwargs): """Convert specified tree to graphviz instance. IPython can automatically plot the returned graphiz instance. Otherw...	[ "def", "to_graphviz", "(", "booster", ",", "fmap", "=", "''", ",", "num_trees", "=", "0", ",", "rankdir", "=", "'UT'", ",", "yes_color", "=", "'#0000FF'", ",", "no_color", "=", "'#FF0000'", ",", "condition_node_params", "=", "None", ",", "leaf_node_params", ...	32.155844	16.766234
def activate(name, lbn, target, profile='default', tgt_type='glob'): ''' .. versionchanged:: 2017.7.0 The ``expr_form`` argument has been renamed to ``tgt_type``, earlier releases must use ``expr_form``. Activate the named worker from the lbn load balancers at the targeted minions ...	[ "def", "activate", "(", "name", ",", "lbn", ",", "target", ",", "profile", "=", "'default'", ",", "tgt_type", "=", "'glob'", ")", ":", "return", "_talk2modjk", "(", "name", ",", "lbn", ",", "target", ",", "'worker_activate'", ",", "profile", ",", "tgt_ty...	29.809524	23.142857
def find_covalent_bonds(ampal, max_range=2.2, threshold=1.1, tag=True): """Finds all covalent bonds in the AMPAL object. Parameters ---------- ampal : AMPAL Object Any AMPAL object with a `get_atoms` method. max_range : float, optional Used to define the sector size, so interactions...	[ "def", "find_covalent_bonds", "(", "ampal", ",", "max_range", "=", "2.2", ",", "threshold", "=", "1.1", ",", "tag", "=", "True", ")", ":", "sectors", "=", "gen_sectors", "(", "ampal", ".", "get_atoms", "(", ")", ",", "max_range", "*", "1.1", ")", "bond...	38.459459	17.621622
def _get_enrollments_list_page(self, params=None): """ Submit request to retrieve enrollments list. Args: params (dict): Query parameters to use in the request. Valid parameters are: * course_id: Filters the result to course enrollments for the course ...	[ "def", "_get_enrollments_list_page", "(", "self", ",", "params", "=", "None", ")", ":", "req_url", "=", "urljoin", "(", "self", ".", "base_url", ",", "self", ".", "enrollment_list_url", ")", "resp", "=", "self", ".", "requester", ".", "get", "(", "req_url"...	40.827586	19.517241
def bezier_unit_tangent(seg, t): """Returns the unit tangent of the segment at t. Notes ----- If you receive a RuntimeWarning, try the following: >>> import numpy >>> old_numpy_error_settings = numpy.seterr(invalid='raise') This can be undone with: >>> numpy.seterr(**old_numpy_error_set...	[ "def", "bezier_unit_tangent", "(", "seg", ",", "t", ")", ":", "assert", "0", "<=", "t", "<=", "1", "dseg", "=", "seg", ".", "derivative", "(", "t", ")", "# Note: dseg might be numpy value, use np.seterr(invalid='raise')", "try", ":", "unit_tangent", "=", "dseg",...	39.583333	18.777778
def _set_auth(self, v, load=False): """ Setter method for auth, mapped from YANG variable /rbridge_id/snmp_server/user/auth (enumeration) If this variable is read-only (config: false) in the source YANG file, then _set_auth is considered as a private method. Backends looking to populate this variabl...	[ "def", "_set_auth", "(", "self", ",", "v", ",", "load", "=", "False", ")", ":", "if", "hasattr", "(", "v", ",", "\"_utype\"", ")", ":", "v", "=", "v", ".", "_utype", "(", "v", ")", "try", ":", "t", "=", "YANGDynClass", "(", "v", ",", "base", ...	92.136364	43.954545
def connect_get_namespaced_pod_attach(self, name, namespace, **kwargs): # noqa: E501 """connect_get_namespaced_pod_attach # noqa: E501 connect GET requests to attach of Pod # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, ple...	[ "def", "connect_get_namespaced_pod_attach", "(", "self", ",", "name", ",", "namespace", ",", "", "", "kwargs", ")", ":", "# noqa: E501", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async_req'", ")", ":", ...	69.407407	42.185185
def invoke_hook_bolt_ack(self, heron_tuple, process_latency_ns): """invoke task hooks for every time bolt acks a tuple :type heron_tuple: HeronTuple :param heron_tuple: tuple that is acked :type process_latency_ns: float :param process_latency_ns: process latency in nano seconds """ if len(...	[ "def", "invoke_hook_bolt_ack", "(", "self", ",", "heron_tuple", ",", "process_latency_ns", ")", ":", "if", "len", "(", "self", ".", "task_hooks", ")", ">", "0", ":", "bolt_ack_info", "=", "BoltAckInfo", "(", "heron_tuple", "=", "heron_tuple", ",", "acking_task...	45.642857	15.5
def setup(self, level=None, log_file=None, json=None): ''' Load everything up. Note that any arg here will override both default and custom settings @param level: the log level @param log_file: boolean t/f whether to log to a file, else stdout @param json: boolean t/f wh...	[ "def", "setup", "(", "self", ",", "level", "=", "None", ",", "log_file", "=", "None", ",", "json", "=", "None", ")", ":", "self", ".", "settings", "=", "self", ".", "wrapper", ".", "load", "(", "self", ".", "settings_name", ")", "my_level", "=", "l...	47.081081	26.162162
def _setResult(self, result): """ Sets the result. If the result is already set, raises C{AlreadyCalledError}. @raise AlreadyCalledError: The result was already set. @return: C{None}, if the result was successfully set. """ if self._result is not _NO_RESULT: ...	[ "def", "_setResult", "(", "self", ",", "result", ")", ":", "if", "self", ".", "_result", "is", "not", "_NO_RESULT", ":", "raise", "AlreadyCalledError", "(", ")", "self", ".", "_result", "=", "result" ]	31.166667	15
def packSeptets(octets, padBits=0): """ Packs the specified octets into septets Typically the output of encodeGsm7 would be used as input to this function. The resulting bytearray contains the original GSM-7 characters packed into septets ready for transmission. :rtype: bytearray """ r...	[ "def", "packSeptets", "(", "octets", ",", "padBits", "=", "0", ")", ":", "result", "=", "bytearray", "(", ")", "if", "type", "(", "octets", ")", "==", "str", ":", "octets", "=", "iter", "(", "rawStrToByteArray", "(", "octets", ")", ")", "elif", "type...	32.757576	17.484848
def create_issue(self, project_id, summary, issue_type_id, priority_id, extra_request_params={}): """ client = BacklogClient("your_space_name", "your_api_key") project_key = "YOUR_PROJECT" project_id = client.get_project_id(project_key) issue_type_id = client.project_issue_types...	[ "def", "create_issue", "(", "self", ",", "project_id", ",", "summary", ",", "issue_type_id", ",", "priority_id", ",", "extra_request_params", "=", "{", "}", ")", ":", "request_params", "=", "extra_request_params", "request_params", "[", "\"projectId\"", "]", "=", ...	41.125	15.291667
def to_team(team): """Serializes team to id string :param team: object to serialize :return: string id """ from sevenbridges.models.team import Team if not team: raise SbgError('Team is required!') elif isinstance(team, Team): return team.i...	[ "def", "to_team", "(", "team", ")", ":", "from", "sevenbridges", ".", "models", ".", "team", "import", "Team", "if", "not", "team", ":", "raise", "SbgError", "(", "'Team is required!'", ")", "elif", "isinstance", "(", "team", ",", "Team", ")", ":", "retu...	32.071429	11.071429
def __build_config_block(self, config_block_node): """parse `config_block` in each section Args: config_block_node (TreeNode): Description Returns: [line_node1, line_node2, ...] """ node_lists = [] for line_node in config_block_node: ...	[ "def", "__build_config_block", "(", "self", ",", "config_block_node", ")", ":", "node_lists", "=", "[", "]", "for", "line_node", "in", "config_block_node", ":", "if", "isinstance", "(", "line_node", ",", "pegnode", ".", "ConfigLine", ")", ":", "node_lists", "....	39.578947	15
def index(self): """Retrieve the attribute index number. Args:: no argument Returns:: attribute index number (starting at 0) C library equivalent : SDfindattr """ self._index = _C.SDfindattr(self._obj._id, sel...	[ "def", "index", "(", "self", ")", ":", "self", ".", "_index", "=", "_C", ".", "SDfindattr", "(", "self", ".", "_obj", ".", "_id", ",", "self", ".", "_name", ")", "_checkErr", "(", "'find'", ",", "self", ".", "_index", ",", "'illegal attribute name'", ...	23.764706	23.588235
def _pretty_print_event(event, colored): """ Basic formatter to convert an event object to string """ event.timestamp = colored.yellow(event.timestamp) event.log_stream_name = colored.cyan(event.log_stream_name) return ' '.join([event.log_stream_name, event.timestamp, ev...	[ "def", "_pretty_print_event", "(", "event", ",", "colored", ")", ":", "event", ".", "timestamp", "=", "colored", ".", "yellow", "(", "event", ".", "timestamp", ")", "event", ".", "log_stream_name", "=", "colored", ".", "cyan", "(", "event", ".", "log_strea...	40.75	18
def option_configure(debug=False, path=None): """ Summary: Initiate configuration menu to customize metal runtime options. Console script ```keyconfig``` invokes this option_configure directly in debug mode to display the contents of the local config file (if exists) Args: :p...	[ "def", "option_configure", "(", "debug", "=", "False", ",", "path", "=", "None", ")", ":", "if", "CONFIG_SCRIPT", "in", "sys", ".", "argv", "[", "0", "]", ":", "debug", "=", "True", "# set debug mode if invoked from CONFIG_SCRIPT", "if", "path", "is", "None"...	39.851852	20.962963
def recursive_index_decode(int_array, max=32767, min=-32768): """Unpack an array of integers using recursive indexing. :param int_array: the input array of integers :param max: the maximum integer size :param min: the minimum integer size :return the array of integers after recursive index decoding...	[ "def", "recursive_index_decode", "(", "int_array", ",", "max", "=", "32767", ",", "min", "=", "-", "32768", ")", ":", "out_arr", "=", "[", "]", "decoded_val", "=", "0", "for", "item", "in", "int_array", ".", "tolist", "(", ")", ":", "if", "item", "==...	36.058824	11.529412
def _interpolate_missing_data(data, mask, method='cubic'): """ Interpolate missing data as identified by the ``mask`` keyword. Parameters ---------- data : 2D `~numpy.ndarray` An array containing the 2D image. mask : 2D bool `~numpy.ndarray` A 2D booleen mask array with the sam...	[ "def", "_interpolate_missing_data", "(", "data", ",", "mask", ",", "method", "=", "'cubic'", ")", ":", "from", "scipy", "import", "interpolate", "data_interp", "=", "np", ".", "array", "(", "data", ",", "copy", "=", "True", ")", "if", "len", "(", "data_i...	30.709091	20.818182
def encode(B): """ Encode data using Hamming(7, 4) code. E.g.: encode([0, 0, 1, 1]) encode([[0, 0, 0, 1], [0, 1, 0, 1]]) :param array B: binary data to encode (must be shaped as (4, ) or (-1, 4)). """ B = array(B) flatten = False if len(B.shape) == 1: ...	[ "def", "encode", "(", "B", ")", ":", "B", "=", "array", "(", "B", ")", "flatten", "=", "False", "if", "len", "(", "B", ".", "shape", ")", "==", "1", ":", "flatten", "=", "True", "B", "=", "B", ".", "reshape", "(", "1", ",", "-", "1", ")", ...	18.714286	25
def init_argparser_working_dir( self, argparser, explanation='', help_template=( 'the working directory; %(explanation)s' 'default is current working directory (%(cwd)s)'), ): """ Subclass could an extra expanation on how th...	[ "def", "init_argparser_working_dir", "(", "self", ",", "argparser", ",", "explanation", "=", "''", ",", "help_template", "=", "(", "'the working directory; %(explanation)s'", "'default is current working directory (%(cwd)s)'", ")", ",", ")", ":", "cwd", "=", "self", "."...	30.6	17.96
def free (self): """ Returns free properties which are not dependency properties. """ result = [p for p in self.lazy_properties if not p.feature.incidental and p.feature.free] result.extend(self.free_) return result	[ "def", "free", "(", "self", ")", ":", "result", "=", "[", "p", "for", "p", "in", "self", ".", "lazy_properties", "if", "not", "p", ".", "feature", ".", "incidental", "and", "p", ".", "feature", ".", "free", "]", "result", ".", "extend", "(", "self"...	38.142857	12
def readline(self, size=-1): "Ignore the `size` since a complete line must be processed." try: record = next(self.reader) return self.outdel.join(self.process_line(record)) + '\n' except StopIteration: return ''	[ "def", "readline", "(", "self", ",", "size", "=", "-", "1", ")", ":", "try", ":", "record", "=", "next", "(", "self", ".", "reader", ")", "return", "self", ".", "outdel", ".", "join", "(", "self", ".", "process_line", "(", "record", ")", ")", "+"...	37.857143	18.428571
def translate_features_to_letter_annotations(protein, more_sites=None): """Store select uniprot features (sites) as letter annotations with the key as the type of site and the values as a list of booleans""" from ssbio.databases.uniprot import longname_sites from collections import defau...	[ "def", "translate_features_to_letter_annotations", "(", "protein", ",", "more_sites", "=", "None", ")", ":", "from", "ssbio", ".", "databases", ".", "uniprot", "import", "longname_sites", "from", "collections", "import", "defaultdict", "sites", "=", "longname_sites", ...	46.155556	22.555556
def list_subscriptions(self, target_id=None, ids=None, query_flags=None): """ListSubscriptions. [Preview API] :param str target_id: :param [str] ids: :param str query_flags: :rtype: [NotificationSubscription] """ query_parameters = {} if target_id ...	[ "def", "list_subscriptions", "(", "self", ",", "target_id", "=", "None", ",", "ids", "=", "None", ",", "query_flags", "=", "None", ")", ":", "query_parameters", "=", "{", "}", "if", "target_id", "is", "not", "None", ":", "query_parameters", "[", "'targetId...	49.238095	20.571429

def number_arg(ctx, obj): ''' Handles LiteralObjects as well as computable arguments ''' if hasattr(obj, 'compute'): obj = next(obj.compute(ctx), False) return to_number(obj)

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28

18

def process(in_path, annot_beats=False, feature="mfcc", framesync=False, boundaries_id="gt", labels_id=None, n_jobs=4, config=None): """Sweeps parameters across the specified algorithm.""" results_file = "results_sweep_boundsE%s_labelsE%s.csv" % (boundaries_id, ...

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46.092784

20.639175

def fetch(self): """Fetch the data for the model from Redis and assign the values. :rtype: bool """ raw = yield gen.Task(self._redis_client.get, self._key) if raw: self.loads(base64.b64decode(raw)) raise gen.Return(True) raise gen.Return(False)

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28

17.454545

def _connect(self): """ Connect to the graphite server """ if (self.proto == 'udp'): stream = socket.SOCK_DGRAM else: stream = socket.SOCK_STREAM if (self.proto[-1] == '4'): family = socket.AF_INET connection_struct = (self...

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40.910448

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def RqueryBM(query_filter,query_items,query_attributes,dataset,database,host=rbiomart_host): """ Queries BioMart. :param query_filtery: one BioMart filter associated with the items being queried :param query_items: list of items to be queried (must assoiate with given filter) :param query_attribute...

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25.565217

def _transform_item(self, content_metadata_item): """ Transform the provided content metadata item to the schema expected by the integrated channel. """ content_metadata_type = content_metadata_item['content_type'] transformed_item = {} for integrated_channel_schema_key, ...

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46.478261

24.434783

def visit_dictcomp(self, node, parent): """visit a DictComp node by returning a fresh instance of it""" newnode = nodes.DictComp(node.lineno, node.col_offset, parent) newnode.postinit( self.visit(node.key, newnode), self.visit(node.value, newnode), [self.visit...

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43.555556

14.555556

def get(self, number): """ Return a pattern for a number. @param number (int) Number of pattern @return (set) Indices of on bits """ if not number in self._patterns: raise IndexError("Invalid number") return self._patterns[number]

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21.333333

13.333333

def command(state, args): """Watch an anime.""" if len(args) < 2: print(f'Usage: {args[0]} {{ID|aid:AID}} [EPISODE]') return aid = state.results.parse_aid(args[1], default_key='db') anime = query.select.lookup(state.db, aid) if len(args) < 3: episode = anime.watched_episodes ...

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32.296296

16.407407

def _find_path(start, end, path=tuple()): """Return the path from start to end. If no path exists, return None. """ path = path + (start, ) if start is end: return path else: ret = None if start.lo is not None: ret = _find_path(start.lo, end, path) if...

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27.533333

13.933333

def iterate(self, max_number_of_files=None): """iterate([max_number_of_files]) -> image, bounding_boxes, image_file Yields the image and the bounding boxes stored in the training set as an iterator. This function loads the images and converts them to gray-scale. It yields the image, the list of boundi...

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39.548387

26.290323

def rhymes(word): """Get words rhyming with a given word. This function may return an empty list if no rhyming words are found in the dictionary, or if the word you pass to the function is itself not found in the dictionary. .. doctest:: >>> import pronouncing >>> pronouncing.rhym...

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33.259259

21.333333

def setCurrentQuery(self, query): """ Sets the query for the current container widget. This will only change the active container, not parent containers. You should use the setQuery method to completely assign a query to this widget. :param query | <orb.Quer...

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39.272727

14.909091

def element_tree_oai_records(tree, header_subs=None): """Take an ElementTree and converts the nodes into BibRecord records. This expects a clean OAI response with the tree root as ListRecords or GetRecord and record as the subtag like so: <ListRecords|GetRecord> <record> <header> ...

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36.566667

18.2

def get_page_object_by_name(context, name): """ **Arguments** ``name` name for object selection :return selected object """ selected_object = None try: for obj_type in context['page']['content']: for obj in context['page']['content'][obj_type]: ...

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27.807692

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def init_validator(required, cls, *additional_validators): """ Create an attrs validator based on the cls provided and required setting. :param bool required: whether the field is required in a given model. :param cls: the expected class type of object value. :return: attrs validator chained correct...

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43.466667

20

def mremove(self, class_name, names): """ Removes multiple components from the network. Removes them from component DataFrames. Parameters ---------- class_name : string Component class name name : list-like Component names Examp...

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24.470588

20.470588

def closeContentsWidget( self ): """ Closes the current contents widget. """ widget = self.currentContentsWidget() if ( not widget ): return widget.close() widget.setParent(None) widget.deleteLater()

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26.181818

10.545455

def to(self, target: typing.Union[types.Message, types.Chat, types.base.Integer, types.base.String]): """ Send to chat :param target: message or chat or id :return: """ if isinstance(target, types.Message): chat_id = target.chat.id elif isinstance(tar...

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31.777778

16.888889

def _generate_url(self, regex, arguments): """ Uses the regex (of the type defined in Django's url patterns) and the arguments to return a relative URL For example, if the regex is '^/api/shreddr/job/(?P<id>[\d]+)$' and arguments is ['23'] then return would be '/api/shreddr/job/23' ...

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45.846154

16.923077

def visualRect(self, index): """ Returns the visual rectangle for the inputed index. :param index | <QModelIndex> :return <QtCore.QRect> """ rect = super(XTreeWidget, self).visualRect(index) item = self.itemFromIndex(index) ...

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35.1875

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def clear_commentarea_cache(comment): """ Clean the plugin output cache of a rendered plugin. """ parent = comment.content_object for instance in CommentsAreaItem.objects.parent(parent): instance.clear_cache()

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33

7.571429

def _verify_any(self): """ Verify that an initial request has been made, or failing that, that the request is in the session :raises: LTIException """ log.debug('verify_any enter') # Check to see if there is a new LTI launch request incoming newrequest = ...

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37.37037

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def bs_values_df(run_list, estimator_list, estimator_names, n_simulate, **kwargs): """Computes a data frame of bootstrap resampled values. Parameters ---------- run_list: list of dicts List of nested sampling run dicts. estimator_list: list of functions Estimators t...

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40.833333

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def get(self, key=NOT_SET, index=NOT_SET, d=None): """Return value with given key or index. If no value is found, return d (None by default). """ if index is NOT_SET and key is not NOT_SET: try: index, value = self._dict[key] except KeyError: return d else: return value elif index is not...

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22.285714

19.285714

def setup_menus(): '''setup console menus''' menu = MPMenuTop([]) menu.add(MPMenuSubMenu('MAVExplorer', items=[MPMenuItem('Settings', 'Settings', 'menuSettings'), MPMenuItem('Map', 'Map', '# map'), MPMenuItem('Sav...

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47.5

24.5

def data_item(self) -> DataItem: """Return the data item associated with this display panel. .. versionadded:: 1.0 Scriptable: Yes """ display_panel = self.__display_panel if not display_panel: return None data_item = display_panel.data_item ...

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29.833333

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def safe_import_module(module_name): """ Like :func:`importlib.import_module`, except it does not raise ``ImportError`` if the requested ``module_name`` was not found. """ try: return import_module(module_name) except ImportError as e: m = re.match(r"No module named '([\w\.]+)'",...

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36.181818

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def binned_pixelrange(self, waverange, **kwargs): """Calculate the number of pixels within the given wavelength range and `binset`. Parameters ---------- waverange : tuple of float or `~astropy.units.quantity.Quantity` Lower and upper limits of the desired wavelength...

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33.590909

22.954545

def sendmail(self, msg_from, msg_to, msg): """Remember the recipients.""" SMTP_dummy.msg_from = msg_from SMTP_dummy.msg_to = msg_to SMTP_dummy.msg = msg

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36

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def format_python2_stmts(python_stmts, show_tokens=False, showast=False, showgrammar=False, compile_mode='exec'): """ formats python2 statements """ parser_debug = {'rules': False, 'transition': False, 'reduce': showgrammar, 'errorstack':...

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def _addsub_int_array(self, other, op): """ Add or subtract array-like of integers equivalent to applying `_time_shift` pointwise. Parameters ---------- other : Index, ExtensionArray, np.ndarray integer-dtype op : {operator.add, operator.sub} ...

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def showtraceback(self, *args, **kwargs): """Display the exception that just occurred. We remove the first stack item because it is our own code. The output is written by self.write(), below. """ try: type, value, tb = sys.exc_info() sys.last_type = typ...

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def prefix_all(self, prefix='#', *lines): """ Same as :func:`~prefix`, for multiple lines. :param prefix: Dockerfile command to use, e.g. ``ENV`` or ``RUN``. :type prefix: unicode | str :param lines: Lines with arguments to be prefixed. :type lines: collections.Iterable[...

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def __process_parameter(self, param_name, param_type, ancestry=None): """Collect values for a given web service operation input parameter.""" assert self.active() param_optional = param_type.optional() has_argument, value = self.__get_param_value(param_name) if has_argument: ...

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def list_symbols(self, all_symbols=False, snapshot=None, regex=None, **kwargs): """ Return the symbols in this library. Parameters ---------- all_symbols : `bool` If True returns all symbols under all snapshots, even if the symbol has been deleted in the ...

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def grey_transmittance(extinction_coefficient, molar_density, length, base=e): r'''Calculates the transmittance of a grey body, given the extinction coefficient of the material, its molar density, and the path length of the radiation. .. math:: \tau = base^{(-\epsilon \cdot l\cdot \rho_m )...

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def set_sticker_position_in_set(self, sticker, position): """ Use this method to move a sticker in a set created by the bot to a specific position . Returns True on success. :param sticker: :param position: :return: """ return apihelper.set_sticker_position_in_set...

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43

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def changes(since, out_file, eager): """Show changes since a specific date.""" root = get_root() history_data = defaultdict(lambda: {'lines': deque(), 'releasers': set()}) with chdir(root): result = run_command( ( 'git log "--pretty=format:%H %s" --date-order --date=...

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def parse(self, request): """Parse incoming request and return an email instance. Args: request: an HttpRequest object, containing the forwarded email, as per the SendGrid specification for inbound emails. Returns: an EmailMultiAlternatives instance, con...

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38.797101

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def move_roles(self, roles): """ Moves roles to this role config group. The roles can be moved from any role config group belonging to the same service. The role type of the destination group must match the role type of the roles. @param roles: The names of the roles to move. @return: List...

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def _set_defaults(self): """ Set configuration parameters for drawing guide """ valid_locations = {'top', 'bottom', 'left', 'right'} horizontal_locations = {'left', 'right'} get_property = self.theme.themeables.property margin_location_lookup = {'t': 'b', 'b': 't'...

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def image_get(fingerprint, remote_addr=None, cert=None, key=None, verify_cert=True, _raw=False): ''' Get an image by its fingerprint fingerprint : The fingerprint of the image to retrieve remote_addr : An...

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def equals(self, other): """Field-based equality for SSAEvents.""" if isinstance(other, SSAEvent): return self.as_dict() == other.as_dict() else: raise TypeError("Cannot compare to non-SSAEvent object")

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40.833333

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def stringify(self, string, phrases, parent=None): """ Stringifies phrases. After parsing of the string via self.parse(), this method takes the escaped string and the list of phrases returned by self.parse() and replaces the original phrases (with tags) with the Phrase-objects in the list and adds the app...

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def new_metric(self, meta): """ Create and register metric, find subscribers for this metric (using meta as filter) and subscribe Return: metric (available_metrics[0]): one of Metric """ type_ = meta.get('type') if not type_: raise ValueEr...

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def update_monitor(self): """Update the monitor and monitor status from the ZM server.""" result = self._client.get_state(self._monitor_url) self._raw_result = result['monitor']

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def emit(self, span_datas): """ :type span_datas: list of :class: `~opencensus.trace.span_data.SpanData` :param list of opencensus.trace.span_data.SpanData span_datas: SpanData tuples to emit """ envelopes = [self.span_data_to_envelope(sd) for sd in span_d...

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def tell(self): """Returns the current position of read head. """ pos = ctypes.c_size_t() check_call(_LIB.MXRecordIOReaderTell(self.handle, ctypes.byref(pos))) return pos.value

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35.166667

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def toplevel(func): """A sync tasklet that sets a fresh default Context. Use this for toplevel view functions such as webapp.RequestHandler.get() or Django view functions. """ synctaskletfunc = synctasklet(func) # wrap at declaration time. @utils.wrapping(func) def add_context_wrapper(*args, **kwds): ...

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30.869565

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def try_int(o:Any)->Any: "Try to convert `o` to int, default to `o` if not possible." # NB: single-item rank-1 array/tensor can be converted to int, but we don't want to do this if isinstance(o, (np.ndarray,Tensor)): return o if o.ndim else int(o) if isinstance(o, collections.Sized) or getattr(o,'__arra...

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55.571429

31

def get_requires(self, requires_types): """Extracts requires of given types from metadata file, filter windows specific requires. """ if not isinstance(requires_types, list): requires_types = list(requires_types) extracted_requires = [] for requires_name in re...

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def pop_rule_nodes(self) -> bool: """Pop context variable that store rule nodes""" self.rule_nodes = self.rule_nodes.parents self.tag_cache = self.tag_cache.parents self.id_cache = self.id_cache.parents return True

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41.5

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def earthsun_distance(unixtime, delta_t, numthreads): """ Calculates the distance from the earth to the sun using the NREL SPA algorithm described in [1]. Parameters ---------- unixtime : numpy array Array of unix/epoch timestamps to calculate solar position for. Unixtime is the...

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31.5

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def get_named_tensor(self, name): """ Returns a named tensor if available. Returns: valid: True if named tensor found, False otherwise tensor: If valid, will be a tensor, otherwise None """ if name in self.named_tensors: return True, self.name...

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30.75

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def get_id_attr(self, value): """Check if value has id attribute and return it. :param value: The value to get id from. :return: The value.id. """ if not hasattr(value, "id") and hasattr(value, "value"): value = value.value return value.id

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32.444444

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def roundedSpecClass(self): """ Spectral class with rounded class number ie A8.5V is A9 """ try: classnumber = str(int(np.around(self.classNumber))) except TypeError: classnumber = str(self.classNumber) return self.classLetter + classnumber

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36.25

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def open_image(fn): """ Opens an image using OpenCV given the file path. Arguments: fn: the file path of the image Returns: The image in RGB format as numpy array of floats normalized to range between 0.0 - 1.0 """ flags = cv2.IMREAD_UNCHANGED+cv2.IMREAD_ANYDEPTH+cv2.IMREAD_ANYCOLO...

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46.769231

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def pad_to_multiple(self, factor): """ Pad the pianoroll with zeros at the end along the time axis with the minimum length that makes the resulting pianoroll length a multiple of `factor`. Parameters ---------- factor : int The value which the length ...

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34.588235

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def setup_config( config_directories=None, config_file=None, default_filename="opentc.yml" ): """Setup configuration """ config_found = False config_file_path = None if config_file: config_file_path = config_file if os.path.isfile(config_file_path) and os.acc...

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31.689655

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def best_motif_in_cluster(single_pwm, clus_pwm, clusters, fg_fa, background, stats=None, metrics=("roc_auc", "recall_at_fdr")): """Return the best motif per cluster for a clustering results. The motif can be either the average motif or one of the clustered motifs. Parameters ---------- single_pwm ...

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30.625

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def _listify(collection): """This is a workaround where Collections are no longer iterable when using JPype.""" new_list = [] for index in range(len(collection)): new_list.append(collection[index]) return new_list

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37

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def add_module_plugin_filters(self, module_plugin_filters): """ Adds `module_plugin_filters` to the internal module filters. May be a single object or an iterable. Every module filters must be a callable and take in a list of plugins and their associated names. """ ...

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44.2

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def get_data(self, data_split="train"): """ Get specified split of data. """ if data_split == 'train': return self._current_train_set elif data_split == 'valid': return self._current_valid_set elif data_split == 'test': return self._cur...

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30

6

def _json_path_search(self, json_dict, expr): """ Scan JSON dictionary with using json-path passed sting of the format of $.element..element1[index] etc. *Args:*\n _json_dict_ - JSON dictionary;\n _expr_ - string of fuzzy search for items within the directory;\n *Return...

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35.68

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def add_job(self, id, func, **kwargs): """ Add the given job to the job list and wakes up the scheduler if it's already running. :param str id: explicit identifier for the job (for modifying it later) :param func: callable (or a textual reference to one) to run at the given time ...

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33.25

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def createGraph(self, name, createCollections = True, isSmart = False, numberOfShards = None, smartGraphAttribute = None) : """Creates a graph and returns it. 'name' must be the name of a class inheriting from Graph. Checks will be performed to make sure that every collection mentionned in the edges def...

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37.176471

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def get_upload_path(self, filename): ''' Override this in proxy subclass to customize upload path. Default upload path is :file:`/media/images/<user.id>/<filename>.<ext>` or :file:`/media/images/common/<filename>.<ext>` if user is not set. ``<filename>`` is retur...

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47.8125

22.6875

def summary(processors, metrics, context): """Print the summary""" # display aggregated metric values on language level def display_header(processors, before='', after=''): """Display the header for the summary results.""" print(before, end=' ') for processor in processors: ...

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34.77193

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def universal_transformer_encoder(encoder_input, encoder_self_attention_bias, hparams, name="encoder", nonpadding=None, save_weights_to=None, ...

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40.970149

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def _mod_run_check(cmd_kwargs, onlyif, unless): ''' Execute the onlyif and unless logic. Return a result dict if: * onlyif failed (onlyif != 0) * unless succeeded (unless == 0) else return True ''' if onlyif: if __salt__['cmd.retcode'](onlyif, **cmd_kwargs) != 0: retu...

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31.181818

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def unlock_queue_message(self, queue_name, sequence_number, lock_token): ''' Unlocks a message for processing by other receivers on a given queue. This operation deletes the lock object, causing the message to be unlocked. A message must have first been locked by a receiver befor...

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48.964286

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def output_stream_http(plugin, initial_streams, external=False, port=0): """Continuously output the stream over HTTP.""" global output if not external: if not args.player: console.exit("The default player (VLC) does not seem to be " "installed. You must specify ...

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36.857143

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def create(self, repo_slug=None, key=None, label=None): """ Associate an ssh key with your repo and return it. """ key = '%s' % key repo_slug = repo_slug or self.bitbucket.repo_slug or '' url = self.bitbucket.url('SET_DEPLOY_KEY', username=self.bi...

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48.846154

11.846154

def create_key_pair(self, key_name): """ Create a new key pair for your account. This will create the key pair within the region you are currently connected to. :type key_name: string :param key_name: The name of the new keypair :rtype: :class:`boto.ec2.keypair....

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def to_graphviz(booster, fmap='', num_trees=0, rankdir='UT', yes_color='#0000FF', no_color='#FF0000', condition_node_params=None, leaf_node_params=None, **kwargs): """Convert specified tree to graphviz instance. IPython can automatically plot the returned graphiz instance. Otherw...

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def activate(name, lbn, target, profile='default', tgt_type='glob'): ''' .. versionchanged:: 2017.7.0 The ``expr_form`` argument has been renamed to ``tgt_type``, earlier releases must use ``expr_form``. Activate the named worker from the lbn load balancers at the targeted minions ...

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def find_covalent_bonds(ampal, max_range=2.2, threshold=1.1, tag=True): """Finds all covalent bonds in the AMPAL object. Parameters ---------- ampal : AMPAL Object Any AMPAL object with a `get_atoms` method. max_range : float, optional Used to define the sector size, so interactions...

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def _get_enrollments_list_page(self, params=None): """ Submit request to retrieve enrollments list. Args: params (dict): Query parameters to use in the request. Valid parameters are: * course_id: Filters the result to course enrollments for the course ...

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def bezier_unit_tangent(seg, t): """Returns the unit tangent of the segment at t. Notes ----- If you receive a RuntimeWarning, try the following: >>> import numpy >>> old_numpy_error_settings = numpy.seterr(invalid='raise') This can be undone with: >>> numpy.seterr(**old_numpy_error_set...

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def _set_auth(self, v, load=False): """ Setter method for auth, mapped from YANG variable /rbridge_id/snmp_server/user/auth (enumeration) If this variable is read-only (config: false) in the source YANG file, then _set_auth is considered as a private method. Backends looking to populate this variabl...

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def connect_get_namespaced_pod_attach(self, name, namespace, **kwargs): # noqa: E501 """connect_get_namespaced_pod_attach # noqa: E501 connect GET requests to attach of Pod # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, ple...

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def invoke_hook_bolt_ack(self, heron_tuple, process_latency_ns): """invoke task hooks for every time bolt acks a tuple :type heron_tuple: HeronTuple :param heron_tuple: tuple that is acked :type process_latency_ns: float :param process_latency_ns: process latency in nano seconds """ if len(...

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def setup(self, level=None, log_file=None, json=None): ''' Load everything up. Note that any arg here will override both default and custom settings @param level: the log level @param log_file: boolean t/f whether to log to a file, else stdout @param json: boolean t/f wh...

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def _setResult(self, result): """ Sets the result. If the result is already set, raises C{AlreadyCalledError}. @raise AlreadyCalledError: The result was already set. @return: C{None}, if the result was successfully set. """ if self._result is not _NO_RESULT: ...

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def packSeptets(octets, padBits=0): """ Packs the specified octets into septets Typically the output of encodeGsm7 would be used as input to this function. The resulting bytearray contains the original GSM-7 characters packed into septets ready for transmission. :rtype: bytearray """ r...

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def create_issue(self, project_id, summary, issue_type_id, priority_id, extra_request_params={}): """ client = BacklogClient("your_space_name", "your_api_key") project_key = "YOUR_PROJECT" project_id = client.get_project_id(project_key) issue_type_id = client.project_issue_types...

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def to_team(team): """Serializes team to id string :param team: object to serialize :return: string id """ from sevenbridges.models.team import Team if not team: raise SbgError('Team is required!') elif isinstance(team, Team): return team.i...

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def __build_config_block(self, config_block_node): """parse `config_block` in each section Args: config_block_node (TreeNode): Description Returns: [line_node1, line_node2, ...] """ node_lists = [] for line_node in config_block_node: ...

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def index(self): """Retrieve the attribute index number. Args:: no argument Returns:: attribute index number (starting at 0) C library equivalent : SDfindattr """ self._index = _C.SDfindattr(self._obj._id, sel...

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def _pretty_print_event(event, colored): """ Basic formatter to convert an event object to string """ event.timestamp = colored.yellow(event.timestamp) event.log_stream_name = colored.cyan(event.log_stream_name) return ' '.join([event.log_stream_name, event.timestamp, ev...

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def option_configure(debug=False, path=None): """ Summary: Initiate configuration menu to customize metal runtime options. Console script ```keyconfig``` invokes this option_configure directly in debug mode to display the contents of the local config file (if exists) Args: :p...

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def recursive_index_decode(int_array, max=32767, min=-32768): """Unpack an array of integers using recursive indexing. :param int_array: the input array of integers :param max: the maximum integer size :param min: the minimum integer size :return the array of integers after recursive index decoding...

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def _interpolate_missing_data(data, mask, method='cubic'): """ Interpolate missing data as identified by the ``mask`` keyword. Parameters ---------- data : 2D `~numpy.ndarray` An array containing the 2D image. mask : 2D bool `~numpy.ndarray` A 2D booleen mask array with the sam...

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def encode(B): """ Encode data using Hamming(7, 4) code. E.g.: encode([0, 0, 1, 1]) encode([[0, 0, 0, 1], [0, 1, 0, 1]]) :param array B: binary data to encode (must be shaped as (4, ) or (-1, 4)). """ B = array(B) flatten = False if len(B.shape) == 1: ...

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def init_argparser_working_dir( self, argparser, explanation='', help_template=( 'the working directory; %(explanation)s' 'default is current working directory (%(cwd)s)'), ): """ Subclass could an extra expanation on how th...

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def free (self): """ Returns free properties which are not dependency properties. """ result = [p for p in self.lazy_properties if not p.feature.incidental and p.feature.free] result.extend(self.free_) return result

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def readline(self, size=-1): "Ignore the `size` since a complete line must be processed." try: record = next(self.reader) return self.outdel.join(self.process_line(record)) + '\n' except StopIteration: return ''

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def translate_features_to_letter_annotations(protein, more_sites=None): """Store select uniprot features (sites) as letter annotations with the key as the type of site and the values as a list of booleans""" from ssbio.databases.uniprot import longname_sites from collections import defau...

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def list_subscriptions(self, target_id=None, ids=None, query_flags=None): """ListSubscriptions. [Preview API] :param str target_id: :param [str] ids: :param str query_flags: :rtype: [NotificationSubscription] """ query_parameters = {} if target_id ...

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