kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def get_best_match(text_log_error): """ Get the best TextLogErrorMatch for a given TextLogErrorMatch. Matches are further filtered by the score cut off. """ score_cut_off = 0.7 return (text_log_error.matches.filter(score__gt=score_cut_off) .order_by("-score", "...	[ "def", "get_best_match", "(", "text_log_error", ")", ":", "score_cut_off", "=", "0.7", "return", "(", "text_log_error", ".", "matches", ".", "filter", "(", "score__gt", "=", "score_cut_off", ")", ".", "order_by", "(", "\"-score\"", ",", "\"-classified_failure_id\"...	40.909091	18.181818
def observableFractionCMD(self, mask, distance_modulus, mass_min=0.1): """ Compute observable fraction of stars with masses greater than mass_min in each pixel in the interior region of the mask. ADW: Careful, this function is fragile! The selection here should be the same...	[ "def", "observableFractionCMD", "(", "self", ",", "mask", ",", "distance_modulus", ",", "mass_min", "=", "0.1", ")", ":", "if", "distance_modulus", "is", "None", ":", "distance_modulus", "=", "self", ".", "distance_modulus", "mass_init", ",", "mass_pdf", ",", ...	51.486486	29.324324
def get_new_names_by_old(): """Return dictionary, new label name indexed by old label name.""" newdict = {} for label_type, label_names in Labels.LABEL_NAMES.items(): for oldname in label_names[1:]: newdict[oldname] = Labels.LABEL_NAMES[label_type][0] return ...	[ "def", "get_new_names_by_old", "(", ")", ":", "newdict", "=", "{", "}", "for", "label_type", ",", "label_names", "in", "Labels", ".", "LABEL_NAMES", ".", "items", "(", ")", ":", "for", "oldname", "in", "label_names", "[", "1", ":", "]", ":", "newdict", ...	40	18.5
def add_validator(validator, base_tag, tag=None): """ Add a validator for the given tag, which defines a subset of base_tag. If tag is None, it is automatically constructed as u'!~' + validator.__name__ Validator is a function that accepts a document node (in the form of a Python object), a sche...	[ "def", "add_validator", "(", "validator", ",", "base_tag", ",", "tag", "=", "None", ")", ":", "if", "not", "tag", ":", "tag", "=", "u'!~'", "+", "validator", ".", "__name__", "for", "xid", ",", "opts", "in", "_VALIDATOR_MODES", ".", "iteritems", "(", "...	46.416667	19.75
def append_transformed_structures(self, tstructs_or_transmuter): """ Method is overloaded to accept either a list of transformed structures or transmuter, it which case it appends the second transmuter"s structures. Args: tstructs_or_transmuter: A list of transformed...	[ "def", "append_transformed_structures", "(", "self", ",", "tstructs_or_transmuter", ")", ":", "if", "isinstance", "(", "tstructs_or_transmuter", ",", "self", ".", "__class__", ")", ":", "self", ".", "transformed_structures", ".", "extend", "(", "tstructs_or_transmuter...	44.470588	22.941176
def nvlist_to_dict(nvlist): '''Convert a CORBA namevalue list into a dictionary.''' result = {} for item in nvlist : result[item.name] = item.value.value() return result	[ "def", "nvlist_to_dict", "(", "nvlist", ")", ":", "result", "=", "{", "}", "for", "item", "in", "nvlist", ":", "result", "[", "item", ".", "name", "]", "=", "item", ".", "value", ".", "value", "(", ")", "return", "result" ]	32.166667	16.833333
def _write(self, context, report_dir, report_name, assets_dir=None, template=None): """Writes the data in `context` in the report's template to `report_name` in `report_dir`. If `assets_dir` is supplied, copies all assets for this report to the specified directory. ...	[ "def", "_write", "(", "self", ",", "context", ",", "report_dir", ",", "report_name", ",", "assets_dir", "=", "None", ",", "template", "=", "None", ")", ":", "if", "template", "is", "None", ":", "template", "=", "self", ".", "_get_template", "(", ")", "...	41.03125	17.09375
def split_points(self, point_cloud): """Split a point cloud into two along this plane. Parameters ---------- point_cloud : :obj:`PointCloud` The PointCloud to divide in two. Returns ------- :obj:`tuple` of :obj:`PointCloud` Two new PointC...	[ "def", "split_points", "(", "self", ",", "point_cloud", ")", ":", "if", "not", "isinstance", "(", "point_cloud", ",", "PointCloud", ")", ":", "raise", "ValueError", "(", "'Can only split point clouds'", ")", "# compute indices above and below", "above_plane", "=", "...	40.225806	23.387097
def _bind_posix_socket(socket_name=None): """ Find a socket to listen on and return it. Returns (socket_name, sock_obj) """ assert socket_name is None or isinstance(socket_name, six.text_type) s = socket.socket(socket.AF_UNIX, socket.SOCK_STREAM) if socket_name: s.bind(socket_name...	[ "def", "_bind_posix_socket", "(", "socket_name", "=", "None", ")", ":", "assert", "socket_name", "is", "None", "or", "isinstance", "(", "socket_name", ",", "six", ".", "text_type", ")", "s", "=", "socket", ".", "socket", "(", "socket", ".", "AF_UNIX", ",",...	31.241379	18.758621
def currentPanel(self): """ Returns the currently active panel based on whether or not it has \ focus. :return <XViewPanel> \|\| None """ focus_widget = QtGui.QApplication.instance().focusWidget() focus_panel = projexui.ancestor(focus_widget, XViewPane...	[ "def", "currentPanel", "(", "self", ")", ":", "focus_widget", "=", "QtGui", ".", "QApplication", ".", "instance", "(", ")", ".", "focusWidget", "(", ")", "focus_panel", "=", "projexui", ".", "ancestor", "(", "focus_widget", ",", "XViewPanel", ")", "panels", ...	29.176471	17.647059
def group(self, groupId): """ The group's content provides access to the items that are shared with the group. Group items are stored by reference and are not physically stored in a group. Rather, they are stored as links to the original item in the item resource (/conten...	[ "def", "group", "(", "self", ",", "groupId", ")", ":", "url", "=", "self", ".", "_url", "+", "\"/groups/%s\"", "%", "groupId", "return", "Group", "(", "groupId", "=", "groupId", ",", "contentURL", "=", "url", ",", "securityHandler", "=", "self", ".", "...	42.894737	16.789474
def tags(self): '''List tags (py_version, abi, platform) supported by this wheel.''' return itertools.product( self.py_version.split('.'), self.abi.split('.'), self.platform.split('.'), )	[ "def", "tags", "(", "self", ")", ":", "return", "itertools", ".", "product", "(", "self", ".", "py_version", ".", "split", "(", "'.'", ")", ",", "self", ".", "abi", ".", "split", "(", "'.'", ")", ",", "self", ".", "platform", ".", "split", "(", "...	34.428571	15.857143
def ensure_no_set_overlap(train: Sequence[str], valid: Sequence[str], test: Sequence[str]) -> None: """ Ensures no test set data has creeped into the training set.""" logger.debug("Ensuring that the training, validation and test data sets have no overlap") train_s = set(train) valid_s = set(valid) ...	[ "def", "ensure_no_set_overlap", "(", "train", ":", "Sequence", "[", "str", "]", ",", "valid", ":", "Sequence", "[", "str", "]", ",", "test", ":", "Sequence", "[", "str", "]", ")", "->", "None", ":", "logger", ".", "debug", "(", "\"Ensuring that the train...	58.470588	37.529412
def get_port(self): """ Return a port to use to talk to this cluster. """ if len(self.client_nodes) > 0: node = self.client_nodes[0] else: node = self.nodes[0] return node.get_port()	[ "def", "get_port", "(", "self", ")", ":", "if", "len", "(", "self", ".", "client_nodes", ")", ">", "0", ":", "node", "=", "self", ".", "client_nodes", "[", "0", "]", "else", ":", "node", "=", "self", ".", "nodes", "[", "0", "]", "return", "node",...	33.142857	9.857143
def AddArguments(cls, argument_group): """Adds command line arguments the helper supports to an argument group. This function takes an argument parser or an argument group object and adds to it all the command line arguments this helper supports. Args: argument_group (argparse._ArgumentGroup\|arg...	[ "def", "AddArguments", "(", "cls", ",", "argument_group", ")", ":", "argument_group", ".", "add_argument", "(", "'--user'", ",", "dest", "=", "'username'", ",", "type", "=", "str", ",", "action", "=", "'store'", ",", "default", "=", "cls", ".", "_DEFAULT_U...	45.541667	21.416667
def expand_counts(df, column, values=None): """ expand a column containing value:count dictionaries """ d = counts_to_dicts(df, column) if len(d) > 0: if values is None: values = set(np.concatenate(d.apply(lambda c: c.keys()).values)) for value in values: name...	[ "def", "expand_counts", "(", "df", ",", "column", ",", "values", "=", "None", ")", ":", "d", "=", "counts_to_dicts", "(", "df", ",", "column", ")", "if", "len", "(", "d", ")", ">", "0", ":", "if", "values", "is", "None", ":", "values", "=", "set"...	40.615385	13.846154
def add(buffer, entropy): """ Mix bytes from string into the PRNG state. The entropy argument is (the lower bound of) an estimate of how much randomness is contained in string, measured in bytes. For more information, see e.g. :rfc:`1750`. This function is only relevant if you are forki...	[ "def", "add", "(", "buffer", ",", "entropy", ")", ":", "if", "not", "isinstance", "(", "buffer", ",", "bytes", ")", ":", "raise", "TypeError", "(", "\"buffer must be a byte string\"", ")", "if", "not", "isinstance", "(", "entropy", ",", "int", ")", ":", ...	31.083333	20.333333
def reanimate(self, _time=None): """ Move dead proxies to unchecked if a backoff timeout passes """ n_reanimated = 0 now = _time or time.time() for proxy in list(self.dead): state = self.proxies[proxy] assert state.next_check is not None if state.next_...	[ "def", "reanimate", "(", "self", ",", "_time", "=", "None", ")", ":", "n_reanimated", "=", "0", "now", "=", "_time", "or", "time", ".", "time", "(", ")", "for", "proxy", "in", "list", "(", "self", ".", "dead", ")", ":", "state", "=", "self", ".",...	38.833333	5.333333
def h1_mhe(simulated_array, observed_array, replace_nan=None, replace_inf=None, remove_neg=False, remove_zero=False): """Compute the H1 mean error. .. image:: /pictures/H1.png .. image:: /pictures/MHE.png Range: Notes: Parameters ---------- simulated_array: one dim...	[ "def", "h1_mhe", "(", "simulated_array", ",", "observed_array", ",", "replace_nan", "=", "None", ",", "replace_inf", "=", "None", ",", "remove_neg", "=", "False", ",", "remove_zero", "=", "False", ")", ":", "# Treats data", "simulated_array", ",", "observed_arra...	32.082192	26.657534
async def shutdown(self): "Force stop the output stream, if there are more data to download, shutdown the connection" if self.stream: if not self.stream.dataeof and not self.stream.dataerror: self.stream.close(self.scheduler) await self.connection.shutdown() ...	[ "async", "def", "shutdown", "(", "self", ")", ":", "if", "self", ".", "stream", ":", "if", "not", "self", ".", "stream", ".", "dataeof", "and", "not", "self", ".", "stream", ".", "dataerror", ":", "self", ".", "stream", ".", "close", "(", "self", "...	45.444444	19.888889
def read_problematic_samples(file_name): """Reads a file with sample IDs. :param file_name: the name of the file containing problematic samples after sex check. :type file_name: str :returns: a set of problematic samples (tuple containing the family ID as first ele...	[ "def", "read_problematic_samples", "(", "file_name", ")", ":", "problematic_samples", "=", "set", "(", ")", "open_func", "=", "open", "if", "file_name", ".", "endswith", "(", "\".gz\"", ")", ":", "open_func", "=", "gzip", ".", "open", "with", "open_func", "(...	34.259259	23.62963
def _get_points_for_series(self, series): """Return generator of dict from columns and values of a series. :param series: One series :return: Generator of dicts """ for point in series.get('values', []): yield self.point_from_cols_vals( series['column...	[ "def", "_get_points_for_series", "(", "self", ",", "series", ")", ":", "for", "point", "in", "series", ".", "get", "(", "'values'", ",", "[", "]", ")", ":", "yield", "self", ".", "point_from_cols_vals", "(", "series", "[", "'columns'", "]", ",", "point",...	31.818182	10.454545
def nexus(network, before_state, after_state, direction=Direction.BIDIRECTIONAL): """Return a tuple of all irreducible nexus of the network.""" validate.is_network(network) sias = (sia(transition, direction) for transition in transitions(network, before_state, after_state)) return...	[ "def", "nexus", "(", "network", ",", "before_state", ",", "after_state", ",", "direction", "=", "Direction", ".", "BIDIRECTIONAL", ")", ":", "validate", ".", "is_network", "(", "network", ")", "sias", "=", "(", "sia", "(", "transition", ",", "direction", "...	45.125	14
def getkey(stype, site_id=None, key=None): 'Returns the cache key depending on its type.' base = '{0}.feedjack'.format(settings.CACHE_MIDDLEWARE_KEY_PREFIX) if stype == T_HOST: return '{0}.hostcache'.format(base) elif stype == T_ITEM: return '{0}.{1}.item.{2}'.format(base, site_id, str2md5(key)) elif stype == T_ME...	[ "def", "getkey", "(", "stype", ",", "site_id", "=", "None", ",", "key", "=", "None", ")", ":", "base", "=", "'{0}.feedjack'", ".", "format", "(", "settings", ".", "CACHE_MIDDLEWARE_KEY_PREFIX", ")", "if", "stype", "==", "T_HOST", ":", "return", "'{0}.hostc...	63	23
def _isint(string): """ >>> _isint("123") True >>> _isint("123.45") False """ return type(string) is int or \ (isinstance(string, _binary_type) or isinstance(string, string_types)) and \ _isconvertible(int, string)	[ "def", "_isint", "(", "string", ")", ":", "return", "type", "(", "string", ")", "is", "int", "or", "(", "isinstance", "(", "string", ",", "_binary_type", ")", "or", "isinstance", "(", "string", ",", "string_types", ")", ")", "and", "_isconvertible", "(",...	23.363636	12.818182
def advance(self): """Carry out one iteration of Arnoldi.""" if self.iter >= self.maxiter: raise ArgumentError('Maximum number of iterations reached.') if self.invariant: raise ArgumentError('Krylov subspace was found to be invariant ' 'in ...	[ "def", "advance", "(", "self", ")", ":", "if", "self", ".", "iter", ">=", "self", ".", "maxiter", ":", "raise", "ArgumentError", "(", "'Maximum number of iterations reached.'", ")", "if", "self", ".", "invariant", ":", "raise", "ArgumentError", "(", "'Krylov s...	41.045455	16.488636
def result(self, timeout=None): """Return the value returned by the call. If the call hasn't yet completed then this method will wait up to ''timeout'' seconds. More information in the :doc:`usage` page. If the call hasn't completed in timeout seconds then a TimeoutError will be raised. ...	[ "def", "result", "(", "self", ",", "timeout", "=", "None", ")", ":", "if", "not", "self", ".", "_ended", "(", ")", ":", "return", "scoop", ".", "futures", ".", "_join", "(", "self", ")", "if", "self", ".", "exceptionValue", "is", "not", "None", ":"...	43.947368	21.684211
def delete_detail(self, request): """ Implements the Delete Detail (delete an object) maps to DELETE /api/object_name/:id/ in rest semantics :param request: rip.Request :return: rip.Response """ pipeline = crud_pipeline_factory.delete_detail_pipeline( ...	[ "def", "delete_detail", "(", "self", ",", "request", ")", ":", "pipeline", "=", "crud_pipeline_factory", ".", "delete_detail_pipeline", "(", "configuration", "=", "self", ".", "configuration", ")", "return", "pipeline", "(", "request", "=", "request", ")" ]	35	11.727273
def p_args(self, p): """args : LPAR pos_args_list COMMA kw_args RPAR \| LPAR pos_args_list RPAR \| LPAR kw_args RPAR \| LPAR RPAR \| empty""" if len(p) > 3: if p[3] == ',': p[0] = (p[2], p[4]) elif isinst...	[ "def", "p_args", "(", "self", ",", "p", ")", ":", "if", "len", "(", "p", ")", ">", "3", ":", "if", "p", "[", "3", "]", "==", "','", ":", "p", "[", "0", "]", "=", "(", "p", "[", "2", "]", ",", "p", "[", "4", "]", ")", "elif", "isinstan...	30.066667	10.133333
def unique(self, col_or_col_list): """ Return a list of unique values of a column or a list of lists of column list :param col_or_col_list: a column or a list of columns :return: """ if isinstance(col_or_col_list, list): col_is_list = True col_li...	[ "def", "unique", "(", "self", ",", "col_or_col_list", ")", ":", "if", "isinstance", "(", "col_or_col_list", ",", "list", ")", ":", "col_is_list", "=", "True", "col_list", "=", "col_or_col_list", "else", ":", "col_is_list", "=", "False", "col_list", "=", "[",...	30.230769	19.666667
def _replace_envvar(s, _): """env:KEY or env:KEY:DEFAULT""" e = s.split(":") if len(e) > 3 or len(e) == 1 or e[0] != "env": raise ValueError() elif len(e) == 2: # Note: this can/should raise a KeyError (according to spec). return os.environ[e[1]] else: # len(e) == 3 ...	[ "def", "_replace_envvar", "(", "s", ",", "_", ")", ":", "e", "=", "s", ".", "split", "(", "\":\"", ")", "if", "len", "(", "e", ")", ">", "3", "or", "len", "(", "e", ")", "==", "1", "or", "e", "[", "0", "]", "!=", "\"env\"", ":", "raise", ...	34.4	13.2
def capabilities(self): """A tuple of capabilities this device supports. Returns: (~libinput.constant.DeviceCapability): Device capabilities. """ caps = [] for cap in DeviceCapability: if self._libinput.libinput_device_has_capability(self._handle, cap): caps.append(cap) return tuple(caps)	[ "def", "capabilities", "(", "self", ")", ":", "caps", "=", "[", "]", "for", "cap", "in", "DeviceCapability", ":", "if", "self", ".", "_libinput", ".", "libinput_device_has_capability", "(", "self", ".", "_handle", ",", "cap", ")", ":", "caps", ".", "appe...	25.166667	21.583333
def forecast(stl, fc_func, steps=10, seasonal=False, **fc_func_kwargs): """Forecast the given decomposition ``stl`` forward by ``steps`` steps using the forecasting function ``fc_func``, optionally including the calculated seasonality. This is an additive model, Y[t] = T[t] + S[t] + e[t] Args: ...	[ "def", "forecast", "(", "stl", ",", "fc_func", ",", "steps", "=", "10", ",", "seasonal", "=", "False", ",", "", "", "fc_func_kwargs", ")", ":", "# container for forecast values", "forecast_array", "=", "np", ".", "array", "(", "[", "]", ")", "# forecast ...	48.592105	23.355263
def __analizar_observaciones(self, ret): "Comprueba y extrae observaciones si existen en la respuesta XML" self.Observaciones = [obs["codigoDescripcion"] for obs in ret.get('arrayObservaciones', [])] self.Obs = '\n'.join(["%(codigo)s: %(descripcion)s" % obs for obs in self.Observaciones])	[ "def", "__analizar_observaciones", "(", "self", ",", "ret", ")", ":", "self", ".", "Observaciones", "=", "[", "obs", "[", "\"codigoDescripcion\"", "]", "for", "obs", "in", "ret", ".", "get", "(", "'arrayObservaciones'", ",", "[", "]", ")", "]", "self", "...	77.5	37.5
def get_deviation_content(self, deviationid): """Fetch full data that is not included in the main devaition object The endpoint works with journals and literatures. Deviation objects returned from API contain only excerpt of a journal, use this endpoint to load full content. Any custom CSS ru...	[ "def", "get_deviation_content", "(", "self", ",", "deviationid", ")", ":", "response", "=", "self", ".", "_req", "(", "'/deviation/content'", ",", "{", "'deviationid'", ":", "deviationid", "}", ")", "content", "=", "{", "}", "if", "\"html\"", "in", "response...	32.230769	26.5
def set(self, key: URIRef, value: Union[Literal, BNode, URIRef, str, int], lang: Optional[str]=None): """ Set the VALUE for KEY predicate in the Metadata Graph :param key: Predicate to be set (eg. DCT.creator) :param value: Value to be stored (eg. "Cicero") :param lang: [Optional] Langu...	[ "def", "set", "(", "self", ",", "key", ":", "URIRef", ",", "value", ":", "Union", "[", "Literal", ",", "BNode", ",", "URIRef", ",", "str", ",", "int", "]", ",", "lang", ":", "Optional", "[", "str", "]", "=", "None", ")", ":", "if", "not", "isin...	47.5625	17.3125
def _create_dynamic_xml(self, cmdname, tag_name, mode, subelements=None): """Create RIBCL XML to send to iLO. This function creates the dynamic xml required to be sent to the ILO for all the APIs. :param cmdname: the API which needs to be implemented. :param tag_name: the tag i...	[ "def", "_create_dynamic_xml", "(", "self", ",", "cmdname", ",", "tag_name", ",", "mode", ",", "subelements", "=", "None", ")", ":", "root", "=", "etree", ".", "Element", "(", "'RIBCL'", ",", "VERSION", "=", "\"2.0\"", ")", "login", "=", "etree", ".", "...	37.09375	18.84375
def increment(self, name, count=1, rate=1): # type: (str, int, float) -> None """Increment a Counter metric""" if self._should_send_metric(name, rate): self._request( Counter( self._create_metric_name_for_request(name), int(cou...	[ "def", "increment", "(", "self", ",", "name", ",", "count", "=", "1", ",", "rate", "=", "1", ")", ":", "# type: (str, int, float) -> None", "if", "self", ".", "_should_send_metric", "(", "name", ",", "rate", ")", ":", "self", ".", "_request", "(", "Count...	31.916667	13.916667
def _flatten_listener(listener): """ from { "Listener": { "InstancePort": 80, "LoadBalancerPort": 80, "Protocol": "HTTP", "InstanceProtocol": "HTTP" }, "PolicyNames": [] }, to { "InstancePort": 80, "LoadBalancerPort": 80, ...	[ "def", "_flatten_listener", "(", "listener", ")", ":", "result", "=", "dict", "(", ")", "if", "set", "(", "listener", ".", "keys", "(", ")", ")", "==", "set", "(", "[", "'Listener'", ",", "'PolicyNames'", "]", ")", ":", "result", ".", "update", "(", ...	20.419355	20.16129
def find_base(path): """Find the base of a glob.""" result = _pattern.match(path) if result: base = result.group(0) else: base = "./" if base.endswith('/') or base.endswith('\\'): return os.path.abspath(base) else: return os.path.dirname(os.path.abspath(base))	[ "def", "find_base", "(", "path", ")", ":", "result", "=", "_pattern", ".", "match", "(", "path", ")", "if", "result", ":", "base", "=", "result", ".", "group", "(", "0", ")", "else", ":", "base", "=", "\"./\"", "if", "base", ".", "endswith", "(", ...	20.307692	21
def _check_exists(database: Database, table: LdapObjectClass, key: str, value: str): """ Check if a given LDAP object exists. """ try: get_one(table, Q(**{key: value}), database=database) return True except ObjectDoesNotExist: return False	[ "def", "_check_exists", "(", "database", ":", "Database", ",", "table", ":", "LdapObjectClass", ",", "key", ":", "str", ",", "value", ":", "str", ")", ":", "try", ":", "get_one", "(", "table", ",", "Q", "(", "", "", "{", "key", ":", "value", "}",...	38.428571	21
def _load_wm_map(exclude_auto=None): """Load an ontology map for world models. exclude_auto : None or list[tuple] A list of ontology mappings for which automated mappings should be excluded, e.g. [(HUME, UN)] would result in not using mappings from HUME to UN. """ exclude_auto =...	[ "def", "_load_wm_map", "(", "exclude_auto", "=", "None", ")", ":", "exclude_auto", "=", "[", "]", "if", "not", "exclude_auto", "else", "exclude_auto", "path_here", "=", "os", ".", "path", ".", "dirname", "(", "os", ".", "path", ".", "abspath", "(", "__fi...	39.675439	13.587719
def symlink(self, link_target, path, dir_fd=None): """Creates the specified symlink, pointed at the specified link target. Args: link_target: The target of the symlink. path: Path to the symlink to create. dir_fd: If not `None`, the file descriptor of a directory, ...	[ "def", "symlink", "(", "self", ",", "link_target", ",", "path", ",", "dir_fd", "=", "None", ")", ":", "link_target", "=", "self", ".", "_path_with_dir_fd", "(", "link_target", ",", "self", ".", "symlink", ",", "dir_fd", ")", "self", ".", "filesystem", "....	41.4375	18.1875
def dateint_difference(dateint1, dateint2): """Return the difference between two dateints in days. Arguments --------- dateint1 : int An integer object decipting a specific calendaric day; e.g. 20161225. dateint2 : int An integer object decipting a specific calendaric day; e.g. 2016...	[ "def", "dateint_difference", "(", "dateint1", ",", "dateint2", ")", ":", "dt1", "=", "dateint_to_datetime", "(", "dateint1", ")", "dt2", "=", "dateint_to_datetime", "(", "dateint2", ")", "delta", "=", "dt1", "-", "dt2", "return", "abs", "(", "delta", ".", ...	28.421053	21.210526
def convert_to_qutip(expr, full_space=None, mapping=None): """Convert a QNET expression to a qutip object Args: expr: a QNET expression full_space (HilbertSpace): The Hilbert space in which `expr` is defined. If not given, ``expr.space`` is used. The Hilbert space must h...	[ "def", "convert_to_qutip", "(", "expr", ",", "full_space", "=", "None", ",", "mapping", "=", "None", ")", ":", "if", "full_space", "is", "None", ":", "full_space", "=", "expr", ".", "space", "if", "not", "expr", ".", "space", ".", "is_tensor_factor_of", ...	44.88	18.786667
def addError(self, test, err, capt=None): """ Since Skip, Blocked, and Deprecated are all technically errors, but not error states, we want to make sure that they don't show up in the nose output as errors. """ if (err[0] == errors.BlockedTest or ( err[0] ...	[ "def", "addError", "(", "self", ",", "test", ",", "err", ",", "capt", "=", "None", ")", ":", "if", "(", "err", "[", "0", "]", "==", "errors", ".", "BlockedTest", "or", "(", "err", "[", "0", "]", "==", "errors", ".", "SkipTest", ")", "or", "(", ...	45.8125	16.8125
def delete_alias(self, alias_name): """Delete the alias.""" for aliases in self.key_to_aliases.values(): if alias_name in aliases: aliases.remove(alias_name)	[ "def", "delete_alias", "(", "self", ",", "alias_name", ")", ":", "for", "aliases", "in", "self", ".", "key_to_aliases", ".", "values", "(", ")", ":", "if", "alias_name", "in", "aliases", ":", "aliases", ".", "remove", "(", "alias_name", ")" ]	39.4	4.4
def confusion_matrix(self, metrics=None, thresholds=None): """ Get the confusion matrix for the specified metric :param metrics: A string (or list of strings) among metrics listed in :const:`max_metrics`. Defaults to 'f1'. :param thresholds: A value (or list of values) between 0 and 1. ...	[ "def", "confusion_matrix", "(", "self", ",", "metrics", "=", "None", ",", "thresholds", "=", "None", ")", ":", "# make lists out of metrics and thresholds arguments", "if", "metrics", "is", "None", "and", "thresholds", "is", "None", ":", "metrics", "=", "[", "'f...	42.909091	24.757576
def _extract_archive(archive_fpath, archive_file, archive_namelist, output_dir, force_commonprefix=True, prefix=None, dryrun=False, verbose=not QUIET, overwrite=None): """ archive_fpath = zip_fpath archive_file = zip_file """ # force extracted components int...	[ "def", "_extract_archive", "(", "archive_fpath", ",", "archive_file", ",", "archive_namelist", ",", "output_dir", ",", "force_commonprefix", "=", "True", ",", "prefix", "=", "None", ",", "dryrun", "=", "False", ",", "verbose", "=", "not", "QUIET", ",", "overwr...	38.363636	16.121212
def on_connection_open_error(self, connection, error): """Invoked if the connection to RabbitMQ can not be made. :type connection: pika.TornadoConnection :param Exception error: The exception indicating failure """ LOGGER.critical('Could not connect to RabbitMQ (%s): %r', ...	[ "def", "on_connection_open_error", "(", "self", ",", "connection", ",", "error", ")", ":", "LOGGER", ".", "critical", "(", "'Could not connect to RabbitMQ (%s): %r'", ",", "connection", ",", "error", ")", "self", ".", "state", "=", "self", ".", "STATE_CLOSED", "...	37.454545	15.454545
def get_execution_state(self, topologyName, callback=None): """ Get execution state """ if callback: self.execution_state_watchers[topologyName].append(callback) else: execution_state_path = self.get_execution_state_path(topologyName) with open(execution_state_path) as f: d...	[ "def", "get_execution_state", "(", "self", ",", "topologyName", ",", "callback", "=", "None", ")", ":", "if", "callback", ":", "self", ".", "execution_state_watchers", "[", "topologyName", "]", ".", "append", "(", "callback", ")", "else", ":", "execution_state...	33.769231	14.230769
def create_config_headers_dicts(self): """ Creates the config_headers_to_widgets and config_widgets_to_headers and config_headers_to_categories dicts """ self.config_headers_to_widgets = { # blue stuff 'Bot Loadout': { 'team_color_id': (self.blue_p...	[ "def", "create_config_headers_dicts", "(", "self", ")", ":", "self", ".", "config_headers_to_widgets", "=", "{", "# blue stuff", "'Bot Loadout'", ":", "{", "'team_color_id'", ":", "(", "self", ".", "blue_primary_spinbox", ",", ")", ",", "'custom_color_id'", ":", "...	59.625	29.053571
def get_proxy_for_requests(self, url): """ Get proxy configuration for a given URL, in a form ready to use with the Requests library. :param str url: The URL for which to obtain proxy configuration. :returns: Proxy configuration in a form recognized by Requests, for use with the ``proxi...	[ "def", "get_proxy_for_requests", "(", "self", ",", "url", ")", ":", "proxy", "=", "self", ".", "get_proxy", "(", "url", ")", "if", "not", "proxy", ":", "raise", "ProxyConfigExhaustedError", "(", "url", ")", "return", "proxy_parameter_for_requests", "(", "proxy...	46.714286	23.142857
def file_list(package, *kwargs): ''' List the files that belong to a package. CLI Examples: .. code-block:: bash salt '' pkg.file_list nginx ''' ret = file_dict(package) files = [] for pkg_files in six.itervalues(ret['files']): files.extend(pkg_files) ret['files'...	[ "def", "file_list", "(", "package", ",", "", "", "kwargs", ")", ":", "ret", "=", "file_dict", "(", "package", ")", "files", "=", "[", "]", "for", "pkg_files", "in", "six", ".", "itervalues", "(", "ret", "[", "'files'", "]", ")", ":", "files", "."...	20.5625	21.1875
def move_recursive(self, dest_path): """See DAVResource.move_recursive() """ if self.provider.readonly: raise DAVError(HTTP_FORBIDDEN) fpDest = self.provider._loc_to_file_path(dest_path, self.environ) assert not util.is_equal_or_child_uri(self.path, dest_path) assert ...	[ "def", "move_recursive", "(", "self", ",", "dest_path", ")", ":", "if", "self", ".", "provider", ".", "readonly", ":", "raise", "DAVError", "(", "HTTP_FORBIDDEN", ")", "fpDest", "=", "self", ".", "provider", ".", "_loc_to_file_path", "(", "dest_path", ",", ...	46.368421	12.736842
def attach(gandi, ip, vm, background, force): """Attach an ip to a vm. ip can be an ip id or ip vm can be a vm id or name. """ try: ip_ = gandi.ip.info(ip) vm_ = gandi.iaas.info(vm) except UsageError: gandi.error("Can't find this ip %s" % ip) iface = gandi.iface.inf...	[ "def", "attach", "(", "gandi", ",", "ip", ",", "vm", ",", "background", ",", "force", ")", ":", "try", ":", "ip_", "=", "gandi", ".", "ip", ".", "info", "(", "ip", ")", "vm_", "=", "gandi", ".", "iaas", ".", "info", "(", "vm", ")", "except", ...	30.615385	18.038462
def draw_annotation(img, boxes, klass, is_crowd=None): """Will not modify img""" labels = [] assert len(boxes) == len(klass) if is_crowd is not None: assert len(boxes) == len(is_crowd) for cls, crd in zip(klass, is_crowd): clsname = cfg.DATA.CLASS_NAMES[cls] if cr...	[ "def", "draw_annotation", "(", "img", ",", "boxes", ",", "klass", ",", "is_crowd", "=", "None", ")", ":", "labels", "=", "[", "]", "assert", "len", "(", "boxes", ")", "==", "len", "(", "klass", ")", "if", "is_crowd", "is", "not", "None", ":", "asse...	33.25	11.5625
def get_git_revision(repopath): """ Return Git revision for the repository located at repopath Result is a tuple (latest commit hash, branch), with None values on error """ try: git = programs.find_program('git') assert git is not None and osp.isdir(osp.join(repopat...	[ "def", "get_git_revision", "(", "repopath", ")", ":", "try", ":", "git", "=", "programs", ".", "find_program", "(", "'git'", ")", "assert", "git", "is", "not", "None", "and", "osp", ".", "isdir", "(", "osp", ".", "join", "(", "repopath", ",", "'.git'",...	37.121212	20.515152
def exposure_summary_table( aggregate_hazard, exposure_summary=None, callback=None): """Compute the summary from the aggregate hazard to analysis. Source layer : \| haz_id \| haz_class \| aggr_id \| aggr_name \| exposure_count \| Output layer : \| exp_type \| count_hazard_class \| total \| :par...	[ "def", "exposure_summary_table", "(", "aggregate_hazard", ",", "exposure_summary", "=", "None", ",", "callback", "=", "None", ")", ":", "output_layer_name", "=", "summary_4_exposure_summary_table_steps", "[", "'output_layer_name'", "]", "source_fields", "=", "aggregate_ha...	35.610619	18.840708
def resizeEvent(self, event): """ Reimplements the :meth:`*.resizeEvent` method. :param event: QEvent. :type event: QEvent """ super(type(self), self).resizeEvent(event) self.__notifier.refresh_position()	[ "def", "resizeEvent", "(", "self", ",", "event", ")", ":", "super", "(", "type", "(", "self", ")", ",", "self", ")", ".", "resizeEvent", "(", "event", ")", "self", ".", "__notifier", ".", "refresh_position", "(", ")" ]	23	16.454545
def create_function_f_y(self): """output function""" return ca.Function( 'y', [self.t, self.x, self.m, self.p, self.c, self.ng, self.nu], [self.y_rhs], ['t', 'x', 'm', 'p', 'c', 'ng', 'nu'], ['y'], self.func_opt)	[ "def", "create_function_f_y", "(", "self", ")", ":", "return", "ca", ".", "Function", "(", "'y'", ",", "[", "self", ".", "t", ",", "self", ".", "x", ",", "self", ".", "m", ",", "self", ".", "p", ",", "self", ".", "c", ",", "self", ".", "ng", ...	38.571429	17.857143
def _Rforce(self,R,z,phi=0.,t=0.): """ NAME: _Rforce PURPOSE: evaluate the radial force for this potential INPUT: R - Galactocentric cylindrical radius z - vertical height phi - azimuth t - time OUTPUT: ...	[ "def", "_Rforce", "(", "self", ",", "R", ",", "z", ",", "phi", "=", "0.", ",", "t", "=", "0.", ")", ":", "Rz", "=", "R", "", "2.", "+", "z", "", "2.", "sqrtRz", "=", "numpy", ".", "sqrt", "(", "Rz", ")", "return", "R", "*", "(", "1.",...	27.684211	16.105263
def read_text(self): # type: () ->Dict[str,str] """ Get version out of ad-hoc version.txt :return: """ found = {} for file in self.file_inventory.text_files: if not os.path.isfile(file): continue with self.file_opener.open_this(fil...	[ "def", "read_text", "(", "self", ")", ":", "# type: () ->Dict[str,str]", "found", "=", "{", "}", "for", "file", "in", "self", ".", "file_inventory", ".", "text_files", ":", "if", "not", "os", ".", "path", ".", "isfile", "(", "file", ")", ":", "continue",...	33.230769	10.307692
def six_frame(genome, table, minimum = 10): """ translate each sequence into six reading frames """ for seq in parse_fasta(genome): dna = Seq(seq[1].upper().replace('U', 'T'), IUPAC.ambiguous_dna) counter = 0 for sequence in ['f', dna], ['rc', dna.reverse_complement()]: ...	[ "def", "six_frame", "(", "genome", ",", "table", ",", "minimum", "=", "10", ")", ":", "for", "seq", "in", "parse_fasta", "(", "genome", ")", ":", "dna", "=", "Seq", "(", "seq", "[", "1", "]", ".", "upper", "(", ")", ".", "replace", "(", "'U'", ...	44.95	13.85
def _walk_paths(self, base: pathlib.PurePath) \ -> Iterator[pathlib.PurePath]: """ Internal helper for walking paths. This is required to exclude the name of the root entity from the walk. :param base: The base path to prepend to the entity name. :return: An iterator...	[ "def", "_walk_paths", "(", "self", ",", "base", ":", "pathlib", ".", "PurePath", ")", "->", "Iterator", "[", "pathlib", ".", "PurePath", "]", ":", "return", "self", ".", "walk_paths", "(", "base", ")" ]	37	12
def get_class(self, id=None, uri=None, match=None): """ get the saved-class with given ID or via other methods... Note: it tries to guess what is being passed.. In [1]: g.get_class(uri='http://www.w3.org/2000/01/rdf-schema#Resource') Out[1]: <Class *http://www.w3.org/2000/01/rd...	[ "def", "get_class", "(", "self", ",", "id", "=", "None", ",", "uri", "=", "None", ",", "match", "=", "None", ")", ":", "if", "not", "id", "and", "not", "uri", "and", "not", "match", ":", "return", "None", "if", "type", "(", "id", ")", "==", "ty...	32.734694	18.163265
def _file_iter(input_stream, size, offset=0): """读取输入流: Args: input_stream: 待读取文件的二进制流 size: 二进制流的大小 Raises: IOError: 文件流读取失败 """ input_stream.seek(offset) d = input_stream.read(size) while d: yield d d = input_stream.read(size)	[ "def", "_file_iter", "(", "input_stream", ",", "size", ",", "offset", "=", "0", ")", ":", "input_stream", ".", "seek", "(", "offset", ")", "d", "=", "input_stream", ".", "read", "(", "size", ")", "while", "d", ":", "yield", "d", "d", "=", "input_stre...	19.466667	17.2
def delay(self, n, start_time): """Calculate delay before the next retry. Args: n: the number of current attempt. The first attempt should be 1. start_time: the time when retry started in unix time. Returns: Number of seconds to wait before next retry. -1 if retry should give up. """...	[ "def", "delay", "(", "self", ",", "n", ",", "start_time", ")", ":", "if", "(", "n", ">", "self", ".", "max_retries", "or", "(", "n", ">", "self", ".", "min_retries", "and", "time", ".", "time", "(", ")", "-", "start_time", ">", "self", ".", "max_...	32.470588	21.294118
def _measure(self, weighted): """_BaseMeasure subclass representing primary measure for this cube. If the cube response includes a means measure, the return value is means. Otherwise it is counts, with the choice between weighted or unweighted determined by weighted. Note tha...	[ "def", "_measure", "(", "self", ",", "weighted", ")", ":", "return", "(", "self", ".", "_measures", ".", "means", "if", "self", ".", "_measures", ".", "means", "is", "not", "None", "else", "self", ".", "_measures", ".", "weighted_counts", "if", "weighted...	39.666667	18.388889
def delete_mappings_in_network(network_id, network_2_id=None, **kwargs): """ Delete all the resource attribute mappings in a network. If another network is specified, only delete the mappings between the two networks. """ qry = db.DBSession.query(ResourceAttrMap).filter(or_(ResourceAttrMap.n...	[ "def", "delete_mappings_in_network", "(", "network_id", ",", "network_2_id", "=", "None", ",", "", "", "kwargs", ")", ":", "qry", "=", "db", ".", "DBSession", ".", "query", "(", "ResourceAttrMap", ")", ".", "filter", "(", "or_", "(", "ResourceAttrMap", "...	38.235294	31.882353
def find_zone_name(data, zone_id): """ Find on the HTML document the zone name. # expected result <span class="more_info" \ title="Zone can be renamed on Setup tab">1 - zone1</span>, :param data: BeautifulSoup object :param zone: zone id :return: zone name :rtype: string :r...	[ "def", "find_zone_name", "(", "data", ",", "zone_id", ")", ":", "if", "not", "isinstance", "(", "data", ",", "BeautifulSoup", ")", ":", "raise", "TypeError", "(", "\"Function requires BeautilSoup HTML element.\"", ")", "table", "=", "data", ".", "find", "(", "...	33.56	17.32
def eigenvectors_rev(T, right=True, mu=None): r"""Compute eigenvectors of reversible transition matrix. Parameters ---------- T : (d, d) ndarray Transition matrix (stochastic matrix) right : bool, optional If right=True compute right eigenvectors, left eigenvectors otherwise...	[ "def", "eigenvectors_rev", "(", "T", ",", "right", "=", "True", ",", "mu", "=", "None", ")", ":", "if", "mu", "is", "None", ":", "mu", "=", "stationary_distribution", "(", "T", ")", "\"\"\" symmetrize T \"\"\"", "smu", "=", "np", ".", "sqrt", "(", "mu"...	27.212121	15.727273
def loadings(self): """Loadings = eigenvectors times sqrt(eigenvalues).""" loadings = self.v[:, : self.keep] * np.sqrt(self.eigenvalues) cols = ["PC%s" % i for i in range(1, self.keep + 1)] loadings = pd.DataFrame( loadings, columns=cols, index=self.feature_names ...	[ "def", "loadings", "(", "self", ")", ":", "loadings", "=", "self", ".", "v", "[", ":", ",", ":", "self", ".", "keep", "]", "*", "np", ".", "sqrt", "(", "self", ".", "eigenvalues", ")", "cols", "=", "[", "\"PC%s\"", "%", "i", "for", "i", "in", ...	42.625	18.25
def add_label_to_table(self, row, col, txt): """Add a label to specified cell in table.""" label = QLabel(txt) label.setMargin(5) label.setAlignment(Qt.AlignLeft \| Qt.AlignVCenter) self.table.setCellWidget(row, col, label)	[ "def", "add_label_to_table", "(", "self", ",", "row", ",", "col", ",", "txt", ")", ":", "label", "=", "QLabel", "(", "txt", ")", "label", ".", "setMargin", "(", "5", ")", "label", ".", "setAlignment", "(", "Qt", ".", "AlignLeft", "\|", "Qt", ".", "A...	42.833333	9.666667
def _index_iterator(column_size, max_size, mix_index=False): """ This will iterate over the indexes and return a list of indexes :param column_size: list of int of the size of each list :param max_size: int of the max number of iterations :param mix_index: bool if True will g...	[ "def", "_index_iterator", "(", "column_size", ",", "max_size", ",", "mix_index", "=", "False", ")", ":", "# todo implement a proper partial factorial design", "indexes", "=", "[", "0", "]", "*", "len", "(", "column_size", ")", "index_order", "=", "[", "0", "]", ...	37.3125	16.625
def check_error(response, expect_status=200): """ Youku error should return in json form, like: HTTP 400 { "error":{ "code":120010223, "type":"UploadsException", "description":"Expired upload token" } } But error also maybe in response url par...	[ "def", "check_error", "(", "response", ",", "expect_status", "=", "200", ")", ":", "json", "=", "None", "try", ":", "json", "=", "response", ".", "json", "(", ")", "except", ":", "pass", "if", "(", "response", ".", "status_code", "!=", "expect_status", ...	30.051282	18.769231
def delete(network): """libvirt network cleanup. @raise: libvirt.libvirtError. """ try: network.destroy() except libvirt.libvirtError as error: raise RuntimeError("Unable to destroy network: {}".format(error))	[ "def", "delete", "(", "network", ")", ":", "try", ":", "network", ".", "destroy", "(", ")", "except", "libvirt", ".", "libvirtError", "as", "error", ":", "raise", "RuntimeError", "(", "\"Unable to destroy network: {}\"", ".", "format", "(", "error", ")", ")"...	23.8	18.8
def metadata(sceneid, pmin=2, pmax=98, **kwargs): """ Retrieve image bounds and band statistics. Attributes ---------- sceneid : str Landsat sceneid. For scenes after May 2017, sceneid have to be LANDSAT_PRODUCT_ID. pmin : int, optional, (default: 2) Histogram minimum cu...	[ "def", "metadata", "(", "sceneid", ",", "pmin", "=", "2", ",", "pmax", "=", "98", ",", "", "", "kwargs", ")", ":", "scene_params", "=", "_landsat_parse_scene_id", "(", "sceneid", ")", "meta_data", "=", "_landsat_get_mtl", "(", "sceneid", ")", ".", "get...	27.705882	20.764706
def get_user_ip(request): """Return user ip :param request: Django request object :return: user ip """ ip = get_real_ip(request) if ip is None: ip = get_ip(request) if ip is None: ip = '127.0.0.1' return ip	[ "def", "get_user_ip", "(", "request", ")", ":", "ip", "=", "get_real_ip", "(", "request", ")", "if", "ip", "is", "None", ":", "ip", "=", "get_ip", "(", "request", ")", "if", "ip", "is", "None", ":", "ip", "=", "'127.0.0.1'", "return", "ip" ]	21	14.833333
def _fast_shake(self, x, normals, values, error): '''Take an efficient (not always robust) step towards the constraints. Arguments: \| ``x`` -- The unknowns. \| ``normals`` -- A numpy array with the gradients of the active constraints. Each row is o...	[ "def", "_fast_shake", "(", "self", ",", "x", ",", "normals", ",", "values", ",", "error", ")", ":", "# filter out the degrees of freedom that do not feel the constraints.", "mask", "=", "(", "normals", "!=", "0", ")", ".", "any", "(", "axis", "=", "0", ")", ...	45.117647	20.215686
def minion_sign_in_payload(self): ''' Generates the payload used to authenticate with the master server. This payload consists of the passed in id_ and the ssh public key to encrypt the AES key sent back from the master. :return: Payload dictionary :rtype: dict '...	[ "def", "minion_sign_in_payload", "(", "self", ")", ":", "payload", "=", "{", "}", "payload", "[", "'cmd'", "]", "=", "'_auth'", "payload", "[", "'id'", "]", "=", "self", ".", "opts", "[", "'id'", "]", "if", "'autosign_grains'", "in", "self", ".", "opts...	39.466667	19.2
def addExpression(self, datafields): """ Adds an Expression to the db. Datafields is a tuple in the order: id, rna_quantification_id, name, expression, is_normalized, raw_read_count, score, units, conf_low, conf_hi """ self._expressionValueList.append(datafields) ...	[ "def", "addExpression", "(", "self", ",", "datafields", ")", ":", "self", ".", "_expressionValueList", ".", "append", "(", "datafields", ")", "if", "len", "(", "self", ".", "_expressionValueList", ")", ">=", "self", ".", "_batchSize", ":", "self", ".", "ba...	44.888889	12.888889
def close(self): """Closes the ssh connection.""" if 'isLive' in self.__dict__ and self.isLive: self.transport.close() self.isLive = False	[ "def", "close", "(", "self", ")", ":", "if", "'isLive'", "in", "self", ".", "__dict__", "and", "self", ".", "isLive", ":", "self", ".", "transport", ".", "close", "(", ")", "self", ".", "isLive", "=", "False" ]	34.8	10.4
def match(self, fsys_view): ''' Compare potentially partial criteria against built filesystems entry dictionary ''' evalue_dict = fsys_view[1] for key, value in six.viewitems(self.criteria): if key in evalue_dict: if evalue_dict[key] != value: ...	[ "def", "match", "(", "self", ",", "fsys_view", ")", ":", "evalue_dict", "=", "fsys_view", "[", "1", "]", "for", "key", ",", "value", "in", "six", ".", "viewitems", "(", "self", ".", "criteria", ")", ":", "if", "key", "in", "evalue_dict", ":", "if", ...	33.333333	17.833333
def parallel_bulk(client, actions, thread_count=4, chunk_size=500, max_chunk_bytes=100 * 1014 * 1024, expand_action_callback=expand_action, **kwargs): """ Parallel version of the bulk helper run in multiple threads at once. :arg client: instance of :class:`~elasticsearch.Elasticsearch` to us...	[ "def", "parallel_bulk", "(", "client", ",", "actions", ",", "thread_count", "=", "4", ",", "chunk_size", "=", "500", ",", "max_chunk_bytes", "=", "100", "", "1014", "", "1024", ",", "expand_action_callback", "=", "expand_action", ",", "", "", "kwargs", ...	48.558824	25.382353
def Repository(self, *dirs): """Specify Repository directories to search.""" for d in dirs: if not isinstance(d, SCons.Node.Node): d = self.Dir(d) self.Top.addRepository(d)	[ "def", "Repository", "(", "self", ",", "*", "dirs", ")", ":", "for", "d", "in", "dirs", ":", "if", "not", "isinstance", "(", "d", ",", "SCons", ".", "Node", ".", "Node", ")", ":", "d", "=", "self", ".", "Dir", "(", "d", ")", "self", ".", "Top...	37.166667	8.666667
def MERGE(*args): """ Wipe repeated dependencies from a list of (Analysis, id, filename) tuples, supplied as argument. Replace id with the correct filename. """ # Get the longest common path common_prefix = os.path.dirname(os.path.commonprefix([os.path.abspath(a.scripts[-1][1]) for a, _, _ in a...	[ "def", "MERGE", "(", "*", "args", ")", ":", "# Get the longest common path", "common_prefix", "=", "os", ".", "path", ".", "dirname", "(", "os", ".", "path", ".", "commonprefix", "(", "[", "os", ".", "path", ".", "abspath", "(", "a", ".", "scripts", "[...	39.913043	18.347826
def get(self, key): """Get a value from the cache. Returns None if the key is not in the cache. """ value = redis_conn.get(key) if value is not None: value = pickle.loads(value) return value	[ "def", "get", "(", "self", ",", "key", ")", ":", "value", "=", "redis_conn", ".", "get", "(", "key", ")", "if", "value", "is", "not", "None", ":", "value", "=", "pickle", ".", "loads", "(", "value", ")", "return", "value" ]	22.090909	17.272727
def splitDataset(dataset, groupby): """ Split the given dataset into multiple datasets grouped by the given groupby function. For example:: # Split mnist dataset into 10 datasets, one dataset for each label splitDataset(mnist, groupby=lambda x: x[1]) # Split mnist dataset into 5 datasets, one ...	[ "def", "splitDataset", "(", "dataset", ",", "groupby", ")", ":", "# Split dataset based on the group by function and keep track of indices", "indicesByGroup", "=", "collections", ".", "defaultdict", "(", "list", ")", "for", "k", ",", "g", "in", "itertools", ".", "grou...	41.75	24.083333
def rename(self, req, parent, name, newparent, newname): """Rename a file Valid replies: reply_err """ self.reply_err(req, errno.EROFS)	[ "def", "rename", "(", "self", ",", "req", ",", "parent", ",", "name", ",", "newparent", ",", "newname", ")", ":", "self", ".", "reply_err", "(", "req", ",", "errno", ".", "EROFS", ")" ]	24.857143	13.285714
def save_resource(self, resource_form, args, *kwargs): """Pass through to provider ResourceAdminSession.update_resource""" # Implemented from kitosid template for - # osid.resource.ResourceAdminSession.update_resource if resource_form.is_for_update(): return self.update_res...	[ "def", "save_resource", "(", "self", ",", "resource_form", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "# Implemented from kitosid template for -", "# osid.resource.ResourceAdminSession.update_resource", "if", "resource_form", ".", "is_for_update", "(", ")", ":...	54.5	16.875
def redirect(self, url): '''Used when you need to redirect to another view, and you only have the final plugin:// url.''' # TODO: Should we be overriding self.request with the new request? new_request = self._parse_request(url=url, handle=self.request.handle) log.debug('Redirecti...	[ "def", "redirect", "(", "self", ",", "url", ")", ":", "# TODO: Should we be overriding self.request with the new request?", "new_request", "=", "self", ".", "_parse_request", "(", "url", "=", "url", ",", "handle", "=", "self", ".", "request", ".", "handle", ")", ...	58.857143	23.428571
def unbind (self, event, callback): """ Unbind the callback from the event and ensure that it is never called :param event: the event that should be unbound :type event: str :param callback: the function that should be unbound :rtype callback: function """ ...	[ "def", "unbind", "(", "self", ",", "event", ",", "callback", ")", ":", "if", "self", ".", "_events", ".", "has_key", "(", "event", ")", "and", "len", "(", "self", ".", "_events", "[", "event", "]", ")", ">", "0", ":", "for", "_callback", "in", "s...	43.928571	12.071429
def handler(self): """ The current imported serialization handler module. :return: The imported handler :rtype: module """ if not hasattr(self, "_handler"): self._handler = sys.modules[self.imported] return self._handler	[ "def", "handler", "(", "self", ")", ":", "if", "not", "hasattr", "(", "self", ",", "\"_handler\"", ")", ":", "self", ".", "_handler", "=", "sys", ".", "modules", "[", "self", ".", "imported", "]", "return", "self", ".", "_handler" ]	27.3	15
def snapshots(self, owner=None, restorable_by=None): """ Get all snapshots related to this volume. Note that this requires that all available snapshots for the account be retrieved from EC2 first and then the list is filtered client-side to contain only those for this volume. ...	[ "def", "snapshots", "(", "self", ",", "owner", "=", "None", ",", "restorable_by", "=", "None", ")", ":", "rs", "=", "self", ".", "connection", ".", "get_all_snapshots", "(", "owner", "=", "owner", ",", "restorable_by", "=", "restorable_by", ")", "mine", ...	40.703704	21.666667
def _get_metadata_path(self, key): """ return the metadata pathname for this key """ return "{group}/meta/{key}/meta".format(group=self.group._v_pathname, key=key)	[ "def", "_get_metadata_path", "(", "self", ",", "key", ")", ":", "return", "\"{group}/meta/{key}/meta\"", ".", "format", "(", "group", "=", "self", ".", "group", ".", "_v_pathname", ",", "key", "=", "key", ")" ]	56	14.75
def parse_selinux(parts): """ Parse part of an ls output line that is selinux. Args: parts (list): A four element list of strings representing the initial parts of an ls line after the permission bits. The parts are owner group, selinux info, and the path. Returns: ...	[ "def", "parse_selinux", "(", "parts", ")", ":", "owner", ",", "group", "=", "parts", "[", ":", "2", "]", "selinux", "=", "parts", "[", "2", "]", ".", "split", "(", "\":\"", ")", "lsel", "=", "len", "(", "selinux", ")", "path", ",", "link", "=", ...	29.548387	21.290323
def postfix_to_optree(nodes): """Convert a list of nodes in postfix order to an Optree.""" while len(nodes) > 1: nodes = _reduce(nodes) if len(nodes) == 0: raise OperatorError("Empty node list") node = nodes[0] if isinstance(node, OperatorNode): raise OperatorError("Operator without operands") ...	[ "def", "postfix_to_optree", "(", "nodes", ")", ":", "while", "len", "(", "nodes", ")", ">", "1", ":", "nodes", "=", "_reduce", "(", "nodes", ")", "if", "len", "(", "nodes", ")", "==", "0", ":", "raise", "OperatorError", "(", "\"Empty node list\"", ")",...	23.058824	19.882353
def return_search_summary(start_time=0, end_time=0, nevents=0, ifos=None, **kwargs): """ Function to create a SearchSummary object where all columns are populated but all are set to values that test False (ie. strings to '', floats/ints to 0, ...). This avoids errors when you t...	[ "def", "return_search_summary", "(", "start_time", "=", "0", ",", "end_time", "=", "0", ",", "nevents", "=", "0", ",", "ifos", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "ifos", "is", "None", ":", "ifos", "=", "[", "]", "# create an empty ...	39.254902	18.470588
def write(self, output_stream, kmip_version=enums.KMIPVersion.KMIP_1_0): """ Write the data encoding the DerivationParameters struct to a stream. Args: output_stream (stream): A data stream in which to encode object data, supporting a write method; usually a Bytearra...	[ "def", "write", "(", "self", ",", "output_stream", ",", "kmip_version", "=", "enums", ".", "KMIPVersion", ".", "KMIP_1_0", ")", ":", "local_stream", "=", "BytearrayStream", "(", ")", "if", "self", ".", "_cryptographic_parameters", ":", "self", ".", "_cryptogra...	34.23913	15.021739

def get_best_match(text_log_error): """ Get the best TextLogErrorMatch for a given TextLogErrorMatch. Matches are further filtered by the score cut off. """ score_cut_off = 0.7 return (text_log_error.matches.filter(score__gt=score_cut_off) .order_by("-score", "...

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def observableFractionCMD(self, mask, distance_modulus, mass_min=0.1): """ Compute observable fraction of stars with masses greater than mass_min in each pixel in the interior region of the mask. ADW: Careful, this function is fragile! The selection here should be the same...

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def get_new_names_by_old(): """Return dictionary, new label name indexed by old label name.""" newdict = {} for label_type, label_names in Labels.LABEL_NAMES.items(): for oldname in label_names[1:]: newdict[oldname] = Labels.LABEL_NAMES[label_type][0] return ...

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def add_validator(validator, base_tag, tag=None): """ Add a validator for the given tag, which defines a subset of base_tag. If tag is None, it is automatically constructed as u'!~' + validator.__name__ Validator is a function that accepts a document node (in the form of a Python object), a sche...

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def append_transformed_structures(self, tstructs_or_transmuter): """ Method is overloaded to accept either a list of transformed structures or transmuter, it which case it appends the second transmuter"s structures. Args: tstructs_or_transmuter: A list of transformed...

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def nvlist_to_dict(nvlist): '''Convert a CORBA namevalue list into a dictionary.''' result = {} for item in nvlist : result[item.name] = item.value.value() return result

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32.166667

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def _write(self, context, report_dir, report_name, assets_dir=None, template=None): """Writes the data in `context` in the report's template to `report_name` in `report_dir`. If `assets_dir` is supplied, copies all assets for this report to the specified directory. ...

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def split_points(self, point_cloud): """Split a point cloud into two along this plane. Parameters ---------- point_cloud : :obj:`PointCloud` The PointCloud to divide in two. Returns ------- :obj:`tuple` of :obj:`PointCloud` Two new PointC...

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def _bind_posix_socket(socket_name=None): """ Find a socket to listen on and return it. Returns (socket_name, sock_obj) """ assert socket_name is None or isinstance(socket_name, six.text_type) s = socket.socket(socket.AF_UNIX, socket.SOCK_STREAM) if socket_name: s.bind(socket_name...

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def currentPanel(self): """ Returns the currently active panel based on whether or not it has \ focus. :return <XViewPanel> || None """ focus_widget = QtGui.QApplication.instance().focusWidget() focus_panel = projexui.ancestor(focus_widget, XViewPane...

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def group(self, groupId): """ The group's content provides access to the items that are shared with the group. Group items are stored by reference and are not physically stored in a group. Rather, they are stored as links to the original item in the item resource (/conten...

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def tags(self): '''List tags (py_version, abi, platform) supported by this wheel.''' return itertools.product( self.py_version.split('.'), self.abi.split('.'), self.platform.split('.'), )

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def ensure_no_set_overlap(train: Sequence[str], valid: Sequence[str], test: Sequence[str]) -> None: """ Ensures no test set data has creeped into the training set.""" logger.debug("Ensuring that the training, validation and test data sets have no overlap") train_s = set(train) valid_s = set(valid) ...

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def get_port(self): """ Return a port to use to talk to this cluster. """ if len(self.client_nodes) > 0: node = self.client_nodes[0] else: node = self.nodes[0] return node.get_port()

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def AddArguments(cls, argument_group): """Adds command line arguments the helper supports to an argument group. This function takes an argument parser or an argument group object and adds to it all the command line arguments this helper supports. Args: argument_group (argparse._ArgumentGroup|arg...

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def expand_counts(df, column, values=None): """ expand a column containing value:count dictionaries """ d = counts_to_dicts(df, column) if len(d) > 0: if values is None: values = set(np.concatenate(d.apply(lambda c: c.keys()).values)) for value in values: name...

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def add(buffer, entropy): """ Mix bytes from *string* into the PRNG state. The *entropy* argument is (the lower bound of) an estimate of how much randomness is contained in *string*, measured in bytes. For more information, see e.g. :rfc:`1750`. This function is only relevant if you are forki...

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def reanimate(self, _time=None): """ Move dead proxies to unchecked if a backoff timeout passes """ n_reanimated = 0 now = _time or time.time() for proxy in list(self.dead): state = self.proxies[proxy] assert state.next_check is not None if state.next_...

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38.833333

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def h1_mhe(simulated_array, observed_array, replace_nan=None, replace_inf=None, remove_neg=False, remove_zero=False): """Compute the H1 mean error. .. image:: /pictures/H1.png .. image:: /pictures/MHE.png **Range:** **Notes:** Parameters ---------- simulated_array: one dim...

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async def shutdown(self): "Force stop the output stream, if there are more data to download, shutdown the connection" if self.stream: if not self.stream.dataeof and not self.stream.dataerror: self.stream.close(self.scheduler) await self.connection.shutdown() ...

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def read_problematic_samples(file_name): """Reads a file with sample IDs. :param file_name: the name of the file containing problematic samples after sex check. :type file_name: str :returns: a set of problematic samples (tuple containing the family ID as first ele...

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def _get_points_for_series(self, series): """Return generator of dict from columns and values of a series. :param series: One series :return: Generator of dicts """ for point in series.get('values', []): yield self.point_from_cols_vals( series['column...

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def nexus(network, before_state, after_state, direction=Direction.BIDIRECTIONAL): """Return a tuple of all irreducible nexus of the network.""" validate.is_network(network) sias = (sia(transition, direction) for transition in transitions(network, before_state, after_state)) return...

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45.125

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def getkey(stype, site_id=None, key=None): 'Returns the cache key depending on its type.' base = '{0}.feedjack'.format(settings.CACHE_MIDDLEWARE_KEY_PREFIX) if stype == T_HOST: return '{0}.hostcache'.format(base) elif stype == T_ITEM: return '{0}.{1}.item.{2}'.format(base, site_id, str2md5(key)) elif stype == T_ME...

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63

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def _isint(string): """ >>> _isint("123") True >>> _isint("123.45") False """ return type(string) is int or \ (isinstance(string, _binary_type) or isinstance(string, string_types)) and \ _isconvertible(int, string)

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def advance(self): """Carry out one iteration of Arnoldi.""" if self.iter >= self.maxiter: raise ArgumentError('Maximum number of iterations reached.') if self.invariant: raise ArgumentError('Krylov subspace was found to be invariant ' 'in ...

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def result(self, timeout=None): """Return the value returned by the call. If the call hasn't yet completed then this method will wait up to ''timeout'' seconds. More information in the :doc:`usage` page. If the call hasn't completed in timeout seconds then a TimeoutError will be raised. ...

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def delete_detail(self, request): """ Implements the Delete Detail (delete an object) maps to DELETE /api/object_name/:id/ in rest semantics :param request: rip.Request :return: rip.Response """ pipeline = crud_pipeline_factory.delete_detail_pipeline( ...

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35

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def p_args(self, p): """args : LPAR pos_args_list COMMA kw_args RPAR | LPAR pos_args_list RPAR | LPAR kw_args RPAR | LPAR RPAR | empty""" if len(p) > 3: if p[3] == ',': p[0] = (p[2], p[4]) elif isinst...

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def unique(self, col_or_col_list): """ Return a list of unique values of a column or a list of lists of column list :param col_or_col_list: a column or a list of columns :return: """ if isinstance(col_or_col_list, list): col_is_list = True col_li...

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def _replace_envvar(s, _): """env:KEY or env:KEY:DEFAULT""" e = s.split(":") if len(e) > 3 or len(e) == 1 or e[0] != "env": raise ValueError() elif len(e) == 2: # Note: this can/should raise a KeyError (according to spec). return os.environ[e[1]] else: # len(e) == 3 ...

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def capabilities(self): """A tuple of capabilities this device supports. Returns: (~libinput.constant.DeviceCapability): Device capabilities. """ caps = [] for cap in DeviceCapability: if self._libinput.libinput_device_has_capability(self._handle, cap): caps.append(cap) return tuple(caps)

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def forecast(stl, fc_func, steps=10, seasonal=False, **fc_func_kwargs): """Forecast the given decomposition ``stl`` forward by ``steps`` steps using the forecasting function ``fc_func``, optionally including the calculated seasonality. This is an additive model, Y[t] = T[t] + S[t] + e[t] Args: ...

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def __analizar_observaciones(self, ret): "Comprueba y extrae observaciones si existen en la respuesta XML" self.Observaciones = [obs["codigoDescripcion"] for obs in ret.get('arrayObservaciones', [])] self.Obs = '\n'.join(["%(codigo)s: %(descripcion)s" % obs for obs in self.Observaciones])

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def get_deviation_content(self, deviationid): """Fetch full data that is not included in the main devaition object The endpoint works with journals and literatures. Deviation objects returned from API contain only excerpt of a journal, use this endpoint to load full content. Any custom CSS ru...

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def set(self, key: URIRef, value: Union[Literal, BNode, URIRef, str, int], lang: Optional[str]=None): """ Set the VALUE for KEY predicate in the Metadata Graph :param key: Predicate to be set (eg. DCT.creator) :param value: Value to be stored (eg. "Cicero") :param lang: [Optional] Langu...

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def _create_dynamic_xml(self, cmdname, tag_name, mode, subelements=None): """Create RIBCL XML to send to iLO. This function creates the dynamic xml required to be sent to the ILO for all the APIs. :param cmdname: the API which needs to be implemented. :param tag_name: the tag i...

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def increment(self, name, count=1, rate=1): # type: (str, int, float) -> None """Increment a Counter metric""" if self._should_send_metric(name, rate): self._request( Counter( self._create_metric_name_for_request(name), int(cou...

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def _flatten_listener(listener): """ from { "Listener": { "InstancePort": 80, "LoadBalancerPort": 80, "Protocol": "HTTP", "InstanceProtocol": "HTTP" }, "PolicyNames": [] }, to { "InstancePort": 80, "LoadBalancerPort": 80, ...

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def find_base(path): """Find the base of a glob.""" result = _pattern.match(path) if result: base = result.group(0) else: base = "./" if base.endswith('/') or base.endswith('\\'): return os.path.abspath(base) else: return os.path.dirname(os.path.abspath(base))

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def _check_exists(database: Database, table: LdapObjectClass, key: str, value: str): """ Check if a given LDAP object exists. """ try: get_one(table, Q(**{key: value}), database=database) return True except ObjectDoesNotExist: return False

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def _load_wm_map(exclude_auto=None): """Load an ontology map for world models. exclude_auto : None or list[tuple] A list of ontology mappings for which automated mappings should be excluded, e.g. [(HUME, UN)] would result in not using mappings from HUME to UN. """ exclude_auto =...

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def symlink(self, link_target, path, dir_fd=None): """Creates the specified symlink, pointed at the specified link target. Args: link_target: The target of the symlink. path: Path to the symlink to create. dir_fd: If not `None`, the file descriptor of a directory, ...

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def dateint_difference(dateint1, dateint2): """Return the difference between two dateints in days. Arguments --------- dateint1 : int An integer object decipting a specific calendaric day; e.g. 20161225. dateint2 : int An integer object decipting a specific calendaric day; e.g. 2016...

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def convert_to_qutip(expr, full_space=None, mapping=None): """Convert a QNET expression to a qutip object Args: expr: a QNET expression full_space (HilbertSpace): The Hilbert space in which `expr` is defined. If not given, ``expr.space`` is used. The Hilbert space must h...

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def addError(self, test, err, capt=None): """ Since Skip, Blocked, and Deprecated are all technically errors, but not error states, we want to make sure that they don't show up in the nose output as errors. """ if (err[0] == errors.BlockedTest or ( err[0] ...

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def delete_alias(self, alias_name): """Delete the alias.""" for aliases in self.key_to_aliases.values(): if alias_name in aliases: aliases.remove(alias_name)

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39.4

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def confusion_matrix(self, metrics=None, thresholds=None): """ Get the confusion matrix for the specified metric :param metrics: A string (or list of strings) among metrics listed in :const:`max_metrics`. Defaults to 'f1'. :param thresholds: A value (or list of values) between 0 and 1. ...

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def _extract_archive(archive_fpath, archive_file, archive_namelist, output_dir, force_commonprefix=True, prefix=None, dryrun=False, verbose=not QUIET, overwrite=None): """ archive_fpath = zip_fpath archive_file = zip_file """ # force extracted components int...

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def on_connection_open_error(self, connection, error): """Invoked if the connection to RabbitMQ can not be made. :type connection: pika.TornadoConnection :param Exception error: The exception indicating failure """ LOGGER.critical('Could not connect to RabbitMQ (%s): %r', ...

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37.454545

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def get_execution_state(self, topologyName, callback=None): """ Get execution state """ if callback: self.execution_state_watchers[topologyName].append(callback) else: execution_state_path = self.get_execution_state_path(topologyName) with open(execution_state_path) as f: d...

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def create_config_headers_dicts(self): """ Creates the config_headers_to_widgets and config_widgets_to_headers and config_headers_to_categories dicts """ self.config_headers_to_widgets = { # blue stuff 'Bot Loadout': { 'team_color_id': (self.blue_p...

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59.625

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def get_proxy_for_requests(self, url): """ Get proxy configuration for a given URL, in a form ready to use with the Requests library. :param str url: The URL for which to obtain proxy configuration. :returns: Proxy configuration in a form recognized by Requests, for use with the ``proxi...

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def file_list(package, **kwargs): ''' List the files that belong to a package. CLI Examples: .. code-block:: bash salt '*' pkg.file_list nginx ''' ret = file_dict(package) files = [] for pkg_files in six.itervalues(ret['files']): files.extend(pkg_files) ret['files'...

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20.5625

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def move_recursive(self, dest_path): """See DAVResource.move_recursive() """ if self.provider.readonly: raise DAVError(HTTP_FORBIDDEN) fpDest = self.provider._loc_to_file_path(dest_path, self.environ) assert not util.is_equal_or_child_uri(self.path, dest_path) assert ...

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46.368421

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def attach(gandi, ip, vm, background, force): """Attach an ip to a vm. ip can be an ip id or ip vm can be a vm id or name. """ try: ip_ = gandi.ip.info(ip) vm_ = gandi.iaas.info(vm) except UsageError: gandi.error("Can't find this ip %s" % ip) iface = gandi.iface.inf...

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30.615385

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def draw_annotation(img, boxes, klass, is_crowd=None): """Will not modify img""" labels = [] assert len(boxes) == len(klass) if is_crowd is not None: assert len(boxes) == len(is_crowd) for cls, crd in zip(klass, is_crowd): clsname = cfg.DATA.CLASS_NAMES[cls] if cr...

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def get_git_revision(repopath): """ Return Git revision for the repository located at repopath Result is a tuple (latest commit hash, branch), with None values on error """ try: git = programs.find_program('git') assert git is not None and osp.isdir(osp.join(repopat...

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35.610619

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def resizeEvent(self, event): """ Reimplements the :meth:`*.resizeEvent` method. :param event: QEvent. :type event: QEvent """ super(type(self), self).resizeEvent(event) self.__notifier.refresh_position()

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23

16.454545

def create_function_f_y(self): """output function""" return ca.Function( 'y', [self.t, self.x, self.m, self.p, self.c, self.ng, self.nu], [self.y_rhs], ['t', 'x', 'm', 'p', 'c', 'ng', 'nu'], ['y'], self.func_opt)

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38.571429

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def _Rforce(self,R,z,phi=0.,t=0.): """ NAME: _Rforce PURPOSE: evaluate the radial force for this potential INPUT: R - Galactocentric cylindrical radius z - vertical height phi - azimuth t - time OUTPUT: ...

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27.684211

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def read_text(self): # type: () ->Dict[str,str] """ Get version out of ad-hoc version.txt :return: """ found = {} for file in self.file_inventory.text_files: if not os.path.isfile(file): continue with self.file_opener.open_this(fil...

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33.230769

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def six_frame(genome, table, minimum = 10): """ translate each sequence into six reading frames """ for seq in parse_fasta(genome): dna = Seq(seq[1].upper().replace('U', 'T'), IUPAC.ambiguous_dna) counter = 0 for sequence in ['f', dna], ['rc', dna.reverse_complement()]: ...

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44.95

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def _walk_paths(self, base: pathlib.PurePath) \ -> Iterator[pathlib.PurePath]: """ Internal helper for walking paths. This is required to exclude the name of the root entity from the walk. :param base: The base path to prepend to the entity name. :return: An iterator...

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37

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def get_class(self, id=None, uri=None, match=None): """ get the saved-class with given ID or via other methods... Note: it tries to guess what is being passed.. In [1]: g.get_class(uri='http://www.w3.org/2000/01/rdf-schema#Resource') Out[1]: <Class *http://www.w3.org/2000/01/rd...

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32.734694

18.163265

def _file_iter(input_stream, size, offset=0): """读取输入流: Args: input_stream: 待读取文件的二进制流 size: 二进制流的大小 Raises: IOError: 文件流读取失败 """ input_stream.seek(offset) d = input_stream.read(size) while d: yield d d = input_stream.read(size)

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19.466667

17.2

def delay(self, n, start_time): """Calculate delay before the next retry. Args: n: the number of current attempt. The first attempt should be 1. start_time: the time when retry started in unix time. Returns: Number of seconds to wait before next retry. -1 if retry should give up. """...

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32.470588

21.294118

def _measure(self, weighted): """_BaseMeasure subclass representing primary measure for this cube. If the cube response includes a means measure, the return value is means. Otherwise it is counts, with the choice between weighted or unweighted determined by *weighted*. Note tha...

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39.666667

18.388889

def delete_mappings_in_network(network_id, network_2_id=None, **kwargs): """ Delete all the resource attribute mappings in a network. If another network is specified, only delete the mappings between the two networks. """ qry = db.DBSession.query(ResourceAttrMap).filter(or_(ResourceAttrMap.n...

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38.235294

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def find_zone_name(data, zone_id): """ Find on the HTML document the zone name. # expected result <span class="more_info" \ title="Zone can be renamed on Setup tab">1 - zone1</span>, :param data: BeautifulSoup object :param zone: zone id :return: zone name :rtype: string :r...

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33.56

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def eigenvectors_rev(T, right=True, mu=None): r"""Compute eigenvectors of reversible transition matrix. Parameters ---------- T : (d, d) ndarray Transition matrix (stochastic matrix) right : bool, optional If right=True compute right eigenvectors, left eigenvectors otherwise...

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def loadings(self): """Loadings = eigenvectors times sqrt(eigenvalues).""" loadings = self.v[:, : self.keep] * np.sqrt(self.eigenvalues) cols = ["PC%s" % i for i in range(1, self.keep + 1)] loadings = pd.DataFrame( loadings, columns=cols, index=self.feature_names ...

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def add_label_to_table(self, row, col, txt): """Add a label to specified cell in table.""" label = QLabel(txt) label.setMargin(5) label.setAlignment(Qt.AlignLeft | Qt.AlignVCenter) self.table.setCellWidget(row, col, label)

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def _index_iterator(column_size, max_size, mix_index=False): """ This will iterate over the indexes and return a list of indexes :param column_size: list of int of the size of each list :param max_size: int of the max number of iterations :param mix_index: bool if True will g...

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def check_error(response, expect_status=200): """ Youku error should return in json form, like: HTTP 400 { "error":{ "code":120010223, "type":"UploadsException", "description":"Expired upload token" } } But error also maybe in response url par...

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30.051282

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def delete(network): """libvirt network cleanup. @raise: libvirt.libvirtError. """ try: network.destroy() except libvirt.libvirtError as error: raise RuntimeError("Unable to destroy network: {}".format(error))

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23.8

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def metadata(sceneid, pmin=2, pmax=98, **kwargs): """ Retrieve image bounds and band statistics. Attributes ---------- sceneid : str Landsat sceneid. For scenes after May 2017, sceneid have to be LANDSAT_PRODUCT_ID. pmin : int, optional, (default: 2) Histogram minimum cu...

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def get_user_ip(request): """Return user ip :param request: Django request object :return: user ip """ ip = get_real_ip(request) if ip is None: ip = get_ip(request) if ip is None: ip = '127.0.0.1' return ip

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21

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def _fast_shake(self, x, normals, values, error): '''Take an efficient (not always robust) step towards the constraints. Arguments: | ``x`` -- The unknowns. | ``normals`` -- A numpy array with the gradients of the active constraints. Each row is o...

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def minion_sign_in_payload(self): ''' Generates the payload used to authenticate with the master server. This payload consists of the passed in id_ and the ssh public key to encrypt the AES key sent back from the master. :return: Payload dictionary :rtype: dict '...

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def addExpression(self, datafields): """ Adds an Expression to the db. Datafields is a tuple in the order: id, rna_quantification_id, name, expression, is_normalized, raw_read_count, score, units, conf_low, conf_hi """ self._expressionValueList.append(datafields) ...

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def close(self): """Closes the ssh connection.""" if 'isLive' in self.__dict__ and self.isLive: self.transport.close() self.isLive = False

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34.8

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def match(self, fsys_view): ''' Compare potentially partial criteria against built filesystems entry dictionary ''' evalue_dict = fsys_view[1] for key, value in six.viewitems(self.criteria): if key in evalue_dict: if evalue_dict[key] != value: ...

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def parallel_bulk(client, actions, thread_count=4, chunk_size=500, max_chunk_bytes=100 * 1014 * 1024, expand_action_callback=expand_action, **kwargs): """ Parallel version of the bulk helper run in multiple threads at once. :arg client: instance of :class:`~elasticsearch.Elasticsearch` to us...

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48.558824

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def Repository(self, *dirs): """Specify Repository directories to search.""" for d in dirs: if not isinstance(d, SCons.Node.Node): d = self.Dir(d) self.Top.addRepository(d)

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37.166667

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def MERGE(*args): """ Wipe repeated dependencies from a list of (Analysis, id, filename) tuples, supplied as argument. Replace id with the correct filename. """ # Get the longest common path common_prefix = os.path.dirname(os.path.commonprefix([os.path.abspath(a.scripts[-1][1]) for a, _, _ in a...

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def get(self, key): """Get a value from the cache. Returns None if the key is not in the cache. """ value = redis_conn.get(key) if value is not None: value = pickle.loads(value) return value

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22.090909

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def splitDataset(dataset, groupby): """ Split the given dataset into multiple datasets grouped by the given groupby function. For example:: # Split mnist dataset into 10 datasets, one dataset for each label splitDataset(mnist, groupby=lambda x: x[1]) # Split mnist dataset into 5 datasets, one ...

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41.75

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def rename(self, req, parent, name, newparent, newname): """Rename a file Valid replies: reply_err """ self.reply_err(req, errno.EROFS)

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24.857143

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def save_resource(self, resource_form, *args, **kwargs): """Pass through to provider ResourceAdminSession.update_resource""" # Implemented from kitosid template for - # osid.resource.ResourceAdminSession.update_resource if resource_form.is_for_update(): return self.update_res...

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54.5

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def redirect(self, url): '''Used when you need to redirect to another view, and you only have the final plugin:// url.''' # TODO: Should we be overriding self.request with the new request? new_request = self._parse_request(url=url, handle=self.request.handle) log.debug('Redirecti...

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58.857143

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def unbind (self, event, callback): """ Unbind the callback from the event and ensure that it is never called :param event: the event that should be unbound :type event: str :param callback: the function that should be unbound :rtype callback: function """ ...

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def handler(self): """ The current imported serialization handler module. :return: The imported handler :rtype: module """ if not hasattr(self, "_handler"): self._handler = sys.modules[self.imported] return self._handler

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27.3

15

def snapshots(self, owner=None, restorable_by=None): """ Get all snapshots related to this volume. Note that this requires that all available snapshots for the account be retrieved from EC2 first and then the list is filtered client-side to contain only those for this volume. ...

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40.703704

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def _get_metadata_path(self, key): """ return the metadata pathname for this key """ return "{group}/meta/{key}/meta".format(group=self.group._v_pathname, key=key)

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56

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def parse_selinux(parts): """ Parse part of an ls output line that is selinux. Args: parts (list): A four element list of strings representing the initial parts of an ls line after the permission bits. The parts are owner group, selinux info, and the path. Returns: ...

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29.548387

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def postfix_to_optree(nodes): """Convert a list of nodes in postfix order to an Optree.""" while len(nodes) > 1: nodes = _reduce(nodes) if len(nodes) == 0: raise OperatorError("Empty node list") node = nodes[0] if isinstance(node, OperatorNode): raise OperatorError("Operator without operands") ...

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23.058824

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def return_search_summary(start_time=0, end_time=0, nevents=0, ifos=None, **kwargs): """ Function to create a SearchSummary object where all columns are populated but all are set to values that test False (ie. strings to '', floats/ints to 0, ...). This avoids errors when you t...

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39.254902

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def write(self, output_stream, kmip_version=enums.KMIPVersion.KMIP_1_0): """ Write the data encoding the DerivationParameters struct to a stream. Args: output_stream (stream): A data stream in which to encode object data, supporting a write method; usually a Bytearra...

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34.23913

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