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def _make_request(self, method, endpoint, **kwargs): """ Do the actual request with supplied HTTP method :param method: HTTP method :param endpoint: DHIS2 API endpoint :param kwargs: keyword args :return: response if ok, RequestException if not """ if isin...
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def register_new_suffix_tree(case_insensitive=False): """Factory method, returns new suffix tree object. """ assert isinstance(case_insensitive, bool) root_node = register_new_node() suffix_tree_id = uuid4() event = SuffixTree.Created( originator_id=suffix_tree_id, root_node_id=...
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def top(self, **kwargs): """ Display the running processes of the container. Args: ps_args (str): An optional arguments passed to ps (e.g. ``aux``) Returns: (str): The output of the top Raises: :py:class:`docker.errors.APIError` ...
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def show_xys(self, xs, ys)->None: "Show the `xs` (inputs) and `ys` (targets)." from IPython.display import display, HTML items,names = [], xs[0].names + ['target'] for i, (x,y) in enumerate(zip(xs,ys)): res = [] cats = x.cats if len(x.cats.size()) > 0 else [] ...
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def readShiftFile(self, filename): """ Reads a shift file from disk and populates a dictionary. """ order = [] fshift = open(filename,'r') flines = fshift.readlines() fshift.close() common = [f.strip('#').strip() for f in flines if f.startswith('#')] ...
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def query(name, use_kerberos=None, debug=False): """Query the Channel Information System for details on the given channel name Parameters ---------- name : `~gwpy.detector.Channel`, or `str` Name of the channel of interest Returns ------- channel : `~gwpy.detector.Channel` ...
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def path(self, which=None): """Extend ``nailgun.entity_mixins.Entity.path``. The format of the returned path depends on the value of ``which``: deploy /deployments/<id>/deploy ``super`` is called otherwise. """ if which == 'deploy': return '{0}...
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def autoscroll(self, autoscroll): """Autoscroll will 'right justify' text from the cursor if set True, otherwise it will 'left justify' the text. """ if autoscroll: self.displaymode |= LCD_ENTRYSHIFTINCREMENT else: self.displaymode &= ~LCD_ENTRYSHIFTINCREM...
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def explain_prediction_linear_classifier(clf, doc, vec=None, top=None, top_targets=None, target_names=None, targets...
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def emit(self, value): """Emits a value to output writer. Args: value: a value of type expected by the output writer. """ if not self._tstate.output_writer: logging.error("emit is called, but no output writer is set.") return self._tstate.output_writer.write(value)
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def _build_generator_list(network): """Builds DataFrames with all generators in MV and LV grids Returns ------- :pandas:`pandas.DataFrame<dataframe>` A DataFrame with id of and reference to MV generators :pandas:`pandas.DataFrame<dataframe>` A DataFrame with id of and refere...
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def mousePressEvent(self, event): """Override Qt method Add/remove breakpoints by single click. """ line_number = self.editor.get_linenumber_from_mouse_event(event) shift = event.modifiers() & Qt.ShiftModifier self.editor.debugger.toogle_breakpoint(line_number, ...
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def structure(cls): # type: () -> Text """Get the part structure, as a DNA regex pattern. The structure of most parts can be obtained automatically from the part signature and the restriction enzyme used in the Golden Gate assembly. Warning: If overloading t...
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def parse_rawprofile_blocks(text): """ Split the file into blocks along delimters and and put delimeters back in the list """ # The total time reported in the raw output is from pystone not kernprof # The pystone total time is actually the average time spent in the function delim = 'Total ti...
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def apply(self, word, ctx=None): """ ignore ctx information right now """ flag,reason = Sequential.in_sequence(word,AdjacentConsonants.mei_letters,AdjacentConsonants.reason,self.freq_threshold) if flag: flag,reason = Sequential.in_sequence(word,AdjacentConsonants.agaram_letters,Adjac...
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def setDisabledBorderColor( self ): """ Returns the base color for this node. :return <QColor> """ color = QColor(color) if self._palette is None: self._palette = XNodePalette(self._scenePalette) self._palette.setColor(self._palet...
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def water(target, temperature='pore.temperature', salinity='pore.salinity'): r""" Calculates density of pure water or seawater at atmospheric pressure using Eq. (8) given by Sharqawy et. al [1]. Values at temperature higher than the normal boiling temperature are calculated at the saturation pressur...
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def clone(self, source_id, backup_id, size, volume_id=None, source_host=None): """ create a volume then clone the contents of the backup into the new volume """ volume_id = volume_id or str(uuid.uuid4()) return self.http_put('/volumes/%s' % volume_id, ...
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def move_to(self, element, x=0, y=0): """Deprecated use element.touch('drag', { toX, toY, duration(s) }) instead. Move the mouse by an offset of the specificed element. Support: Android Args: element(WebElement): WebElement Object. x(float): X of...
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def force_run(self, hosts, function, attempts=1): """ Like priority_run(), but starts the task immediately even if that max_threads is exceeded. :type hosts: string|list(string)|Host|list(Host) :param hosts: A hostname or Host object, or a list of them. :type function:...
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def scale(self, xfactor, yfactor=None): """Returns a new envelope rescaled from center by the given factor(s). Arguments: xfactor -- int or float X scaling factor yfactor -- int or float Y scaling factor """ yfactor = xfactor if yfactor is None else yfactor x, y ...
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def strip_lastharaka(text): """Strip the last Haraka from arabic word except Shadda. The striped marks are : - FATHA, DAMMA, KASRA - SUKUN - FATHATAN, DAMMATAN, KASRATAN @param text: arabic text. @type text: unicode. @return: return a striped text. @rtype: unicode. ...
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def _deserialize( self, data, fields_dict, error_store, many=False, partial=False, unknown=RAISE, dict_class=dict, index_errors=True, index=None, ): """Deserialize ``data`` based on the schema defined by ``fields_dict``. :param dict data: The data to deserialize. :param dict...
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def _check_self_to_empty(self, stateid): """ Because of the optimization, the rule for empty states is missing A check takes place live Args: stateid (int): The state identifier Returns: bool: A true or false response """ x_term = stateid.r...
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def render_to_string(template, object, params=None): """ ``object`` will be converted to xml using :func:`easymode.tree.xml`. The resulting xml will be transformed using ``template``. The result is a unicode string containing the transformed xml. :param template: an xslt template name. :pa...
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def calc_trades(current_contracts, desired_holdings, trade_weights, prices, multipliers, **kwargs): """ Calculate the number of tradeable contracts for rebalancing from a set of current contract holdings to a set of desired generic notional holdings based on prevailing prices and mapping...
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def pre_serialize(self, raw, pkt, i): ''' Set length of the header based on ''' self.length = len(raw) + OpenflowHeader._MINLEN
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def score_file(filename): """Score each line in a file and return the scores.""" # Prepare model. hparams = create_hparams() encoders = registry.problem(FLAGS.problem).feature_encoders(FLAGS.data_dir) has_inputs = "inputs" in encoders # Prepare features for feeding into the model. if has_inputs: inpu...
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def get_sla_template_path(service_type=ServiceTypes.ASSET_ACCESS): """ Get the template for a ServiceType. :param service_type: ServiceTypes :return: Path of the template, str """ if service_type == ServiceTypes.ASSET_ACCESS: name = 'access_sla_template.json' elif service_type == Se...
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def delete_user(self, id): """ Delete user with given id. """ self.assert_has_permission('scim.write') uri = self.uri + '/Users/%s' % id headers = self._get_headers() logging.debug("URI=" + str(uri)) logging.debug("HEADERS=" + str(headers)) resp...
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def keys(self): """ Access the keys :returns: twilio.rest.api.v2010.account.key.KeyList :rtype: twilio.rest.api.v2010.account.key.KeyList """ if self._keys is None: self._keys = KeyList(self._version, account_sid=self._solution['sid'], ) return self._...
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def sse(mean, estimator): """ Description: Calculates the Sum of Squared Errors (SSE) of an estimation on flat numpy ndarrays. Parameters: mean: actual value (numpy ndarray) estimator: estimated value of the mean (numpy ndarray) """ return np.sum((np.asa...
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def _validate_empty_attributes(self, attributes): """Check that required attributes are not empty.""" attrs_to_check = set(self._required) & set(attributes) for attr in attrs_to_check: value = getattr(self, attr) # We should always have a value here if value is None or v...
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def _meet(intervals_hier, labels_hier, frame_size): '''Compute the (sparse) least-common-ancestor (LCA) matrix for a hierarchical segmentation. For any pair of frames ``(s, t)``, the LCA is the deepest level in the hierarchy such that ``(s, t)`` are contained within a single segment at that level. ...
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async def writelines(self, lines, eof = False, buffering = True): """ Write lines to current output stream """ for l in lines: await self.write(l, False, buffering) if eof: await self.write(b'', eof, buffering)
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def get_word_vectors(vocab): """ Create a word2vec embedding matrix for all the words in the vocab """ wv = get_data('word2vec') vectors = np.array(len(vocab), len(wv['the'])) for i, tok in enumerate(vocab): word = tok[0] variations = (word, word.lower(), word.lower()[:-1]) for w...
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def _check_property(self, rest=None, require_indexed=True): """Internal helper to check this property for specific requirements. Called by Model._check_properties(). Args: rest: Optional subproperty to check, of the form 'name1.name2...nameN'. Raises: InvalidPropertyError if this property...
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def _create_hexdump(src, start_offset=0, length=16): """ Prepares an hexadecimal dump string :param src: A string containing binary data :param start_offset: The start offset of the source :param length: Length of a dump line :return: A dump string """ FI...
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def _on_connection_failed(self, connection_id, adapter_id, success, failure_reason): """Callback function called when a connection has failed. It is executed in the baBLE working thread: should not be blocking. Args: connection_id (int): A unique identifier for this connection on th...
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def dropDataProducts(self, *pathnames): """Drops (that is, deletes) new (i.e. non-archived) DP items matching the given pathnames.""" trash = QTreeWidget(None) updated = False for path in pathnames: item = self.dpitems.get(path) if item and not item._dp.archived: ...
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def read_structs(fstream): """ Read all structs from likwid's file stream. Args: fstream: Likwid's output file stream. Returns: A generator that can be used to iterate over all structs in the fstream. """ struct = read_struct(fstream) while struct is not None: ...
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def move_to_collection(self, request, *args, **kwargs): """Move samples from source to destination collection.""" ids = self.get_ids(request.data) src_collection_id = self.get_id(request.data, 'source_collection') dst_collection_id = self.get_id(request.data, 'destination_collection') ...
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def get_mean(self, C, rup, sites, dists): """ Returns the mean ground motion in terms of log10 m/s/s, implementing equation 2 (page 502) """ # W2 needs to be a 1 by 5 matrix (not a vector w_2 = np.array([ [C["W_21"], C["W_22"], C["W_23"], C["W_24"], C["W_25"]]...
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def _choose_host(self): """ This method randomly chooses a server from the server list given as a parameter to the parent PythonSDK :return: The selected host to which the Sender will attempt to connect """ # If a host hasn't been chosen yet or there is o...
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def listTagged(self, *args, **kwargs): """ List builds tagged with a tag. Calls "listTagged" XML-RPC. :returns: deferred that when fired returns a list of Build objects. """ data = yield self.call('listTagged', *args, **kwargs) builds = [] for bdata in d...
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def pockettopo2compass(txtfilename, exclude_splays=False, calculate_lrud=False): """Main function which converts a PocketTopo .TXT file to a Compass .DAT file""" print 'Converting PocketTopo data file %s ...' % txtfilename # Read our PocketTopo .TXT file, averaging triple-shots in the process infile = ...
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def load_pa11y_results(stdout, spider, url): """ Load output from pa11y, filtering out the ignored messages. The `stdout` parameter is a bytestring, not a unicode string. """ if not stdout: return [] results = json.loads(stdout.decode('utf8')) ignore_rules = ignore_rules_for_url(sp...
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def _accept_header(self): """ Method for determining correct `Accept` header. Different resources and different GoCD version servers prefer a diverse headers. In order to manage all of them, this method tries to help: if `VERSION_TO_ACCEPT_HEADER` is not provided, if wou...
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def pot_to_rpole_aligned(pot, sma, q, F, d, component=1): """ Transforms surface potential to polar radius """ q = q_for_component(q, component=component) Phi = pot_for_component(pot, q, component=component) logger.debug("libphobe.roche_pole(q={}, F={}, d={}, Omega={})".format(q, F, d, pot)) ...
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def brackets_insanity_check(p_string): """ This function performs a check for different number of '(' and ')' characters, which indicates that some forks are poorly constructed. Parameters ---------- p_string: str String with the definition of the pipeline, e.g.:: 'process...
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def get_feature_layers(self, input_layer=None, trainable=False, use_weighted_sum=False): """Get layers that output the Bi-LM feature. :param input_layer: Use existing input layer. :param trainable: Whether the layers are still trainable. :param use_weighted_sum: Whether to use weighted ...
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def build_pwm(): """ Builds source with Python 2.7 and 3.2, and tests import """ with cd("/tmp/source/c_pwm"): test = "import _PWM; print(_PWM.VERSION)" run("make py2.7") run('sudo python2.7 -c "%s"' % test) run("cp _PWM.so ../RPIO/PWM/") run("mv _PWM.so ../RPIO/PWM/_PWM2...
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def show_raslog_output_show_all_raslog_raslog_entries_switch_or_chassis_name(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") show_raslog = ET.Element("show_raslog") config = show_raslog output = ET.SubElement(show_raslog, "output") show_a...
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def academic_degree(self) -> str: """Get a random academic degree. :return: Degree. :Example: Bachelor. """ degrees = self._data['academic_degree'] return self.random.choice(degrees)
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def dataframe(self, measure, p_dim, s_dim=None, filters={}, df_class=None): """ Return a dataframe with a sumse of the columns of the partition, including a measure and one or two dimensions. FOr dimensions that have labels, the labels are included The returned dataframe will have extra...
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def size(self): """Total number of grid points.""" # Since np.prod(()) == 1.0 we need to handle that by ourselves return (0 if self.shape == () else int(np.prod(self.shape, dtype='int64')))
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def _fmt_fields(fld_vals, fld2fmt): """Optional user-formatting of specific fields, eg, pval: '{:8.2e}'.""" vals = [] for fld, val in fld_vals: if fld in fld2fmt: val = fld2fmt[fld].format(val) vals.append(val) return vals
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def create_output(stdout=None, true_color=False, ansi_colors_only=None): """ Return an :class:`~prompt_toolkit.output.Output` instance for the command line. :param true_color: When True, use 24bit colors instead of 256 colors. (`bool` or :class:`~prompt_toolkit.filters.SimpleFilter`.) :para...
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def _env_filenames(filenames, env): """ Extend filenames with ennv indication of environments. :param list filenames: list of strings indicating filenames :param str env: environment indicator :returns: list of filenames extended with environment version :rtype: list """ env_filenames ...
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def add_position_timing_signal(x, step, hparams): """Add n-dimensional embedding as the position (horizontal) timing signal. Args: x: a tensor with shape [batch, length, depth] step: step hparams: model hyper parameters Returns: a Tensor with the same shape as x. """ if not hparams.positio...
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def RightClick(x: int, y: int, waitTime: float = OPERATION_WAIT_TIME) -> None: """ Simulate mouse right click at point x, y. x: int. y: int. waitTime: float. """ SetCursorPos(x, y) screenWidth, screenHeight = GetScreenSize() mouse_event(MouseEventFlag.RightDown | MouseEventFlag.Absol...
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def verify(password, hash): """ Verify a password against a passed hash """ _, algorithm, cost, salt, password_hash = hash.split("$") password = pbkdf2.pbkdf2_hex(password, salt, int(cost) * 500) return _safe_str_cmp(password, password_hash)
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def validate(self, corpus): """ Perform validation on the given corpus. Args: corpus (Corpus): The corpus to test/validate. """ passed = True results = {} for validator in self.validators: sub_result = validator.validate(corpus) ...
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def _delete_objects_not_in_list(self, cont, object_prefix=""): """ Finds all the objects in the specified container that are not present in the self._local_files list, and deletes them. """ objnames = set(cont.get_object_names(prefix=object_prefix, full_listing=Tr...
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def _clean_accents(self, text): """Remove most accent marks. Note that the circumflexes over alphas and iotas in the text since they determine vocalic quantity. :param text: raw text :return: clean text with minimum accent marks :rtype : string """ accent...
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def serialize(self, keep_readonly=False): """Return the JSON that would be sent to azure from this model. This is an alias to `as_dict(full_restapi_key_transformer, keep_readonly=False)`. :param bool keep_readonly: If you want to serialize the readonly attributes :returns: A dict JSON ...
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def _is_compound_mfr_temperature_tuple(self, value): """Determines whether value is a tuple of the format (compound(str), mfr(float), temperature(float)). :param value: The value to be tested. :returns: True or False""" if not type(value) is tuple: return False ...
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def add(self, **kwargs): """Returns a new MayaDT object with the given offsets.""" return self.from_datetime( pendulum.instance(self.datetime()).add(**kwargs) )
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def repo(self): """Get repository data""" path = urijoin(self.base_url, 'repos', self.owner, self.repository) r = self.fetch(path) repo = r.text return repo
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def _populate_profile_from_group_memberships(self, profile): """ Populate the given profile object from AUTH_LDAP_PROFILE_FLAGS_BY_GROUP. Returns True if the profile was modified. """ save_profile = False for field, group_dns in self.settings.PROFILE_FLAGS_BY_GROUP.items...
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def create_arc(self, mace_type, name): ''' Creates the story arc and initial tree for that arc for the current outline. Returns the resulting Arc instance. ''' arc = Arc(mace_type=mace_type, outline=self, name=name) arc.save() milestone_count = arc.generat...
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def show(commands, raw_text=True, **kwargs): ''' Execute one or more show (non-configuration) commands. commands The commands to be executed. raw_text: ``True`` Whether to return raw text or structured data. transport: ``https`` Specifies the type of conn...
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def _parseline(self, line): """ Results log file line Parser. The parse method in InstrumentCSVResultsFileParser calls this method for each line in the results file that is to be parsed. :param line: a to parse :returns: the number of rows to jump and parse the next data ...
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def calculate_expiration(self, token): """ Calculate token expiration return expiration if the token need to set expiration or refresh, otherwise return None. Args: token (dict): a decoded token """ if not token: return None now =...
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def item_before(self, item): """The item before an item :param item: The item to get the previous item relative to """ prev_iter = self._prev_iter_for(item) if prev_iter is not None: return self._object_at_iter(prev_iter)
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def get_headers_in_order(self): """Gets the headers in the order they want to be displayed. Returns a list of triplets: (idx, key, header_info) """ res = list() #Scan through self.headers_in_order and just bolt on the actual header info for bucket in sorted(self.header...
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def _load_config(): """Searches for config files, reads them and returns a dictionary Looks for a ``check-manifest`` section in ``pyproject.toml``, ``setup.cfg``, and ``tox.ini``, in that order. The first file that exists and has that section will be loaded and returned as a dictionary. """ ...
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def pdf_Rosin_Rammler(d, k, m): r'''Calculates the probability density of a particle distribution following the Rosin-Rammler (RR) model given a particle diameter `d`, and the two parameters `k` and `m`. .. math:: q(d) = k m d^{(m-1)} \exp(- k d^{m}) Parameters ---------- ...
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def assert_string_list(dist, attr, value): """Verify that value is a string list or None""" try: assert ''.join(value) != value except (TypeError, ValueError, AttributeError, AssertionError): raise DistutilsSetupError( "%r must be a list of strings (got %r)" % (attr, value) ...
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def set_fluxinfo(self): """ Uses list of known flux calibrators (with models in CASA) to find full name given in scan. """ knowncals = ['3C286', '3C48', '3C147', '3C138'] # find scans with knowncals in the name sourcenames = [self.sources[source]['source'] for source in self.so...
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def isBetween(self, a, b, axes='xyz'): ''' :a: Point or point equivalent :b: Point or point equivalent :axis: optional string :return: float Checks the coordinates specified in 'axes' of 'self' to determine if they are bounded by 'a' and 'b'. The range is...
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def install_python_module(name): """ instals a python module using pip """ with settings(hide('warnings', 'running', 'stdout', 'stderr'), warn_only=False, capture=True): run('pip --quiet install %s' % name)
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def sortframe(frame): ''' sorts particles for a frame ''' d = frame['data']; sortedargs = np.lexsort([d['xi'],d['yi'],d['zi']]) d = d[sortedargs]; frame['data']=d; return frame;
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def destroy(self): """ Cleanup the activty lifecycle listener """ if self.widget: self.set_active(False) super(AndroidBarcodeView, self).destroy()
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def from_string(cls, width, height, rgba_string): """Returns a Form with 32-bit RGBA pixels Accepts string containing raw RGBA color values """ # Convert RGBA string to ARGB raw = "" for i in range(0, len(rgba_string), 4): raw += rgba_string[i+3] # alpha ...
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def layer_description_extractor(layer, node_to_id): '''get layer description. ''' layer_input = layer.input layer_output = layer.output if layer_input is not None: if isinstance(layer_input, Iterable): layer_input = list(map(lambda x: node_to_id[x], layer_input)) else: ...
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def visit_dictcomp(self, node): """return an astroid.DictComp node as string""" return "{%s: %s %s}" % ( node.key.accept(self), node.value.accept(self), " ".join(n.accept(self) for n in node.generators), )
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def _remote_space_available_unix(self, search_pattern=""): """Return space available on *nix system (BSD/Linux).""" self.ssh_ctl_chan._enter_shell() remote_cmd = "/bin/df -k {}".format(self.file_system) remote_output = self.ssh_ctl_chan.send_command( remote_cmd, expect_string...
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def handle_notification(self, msgtype, method, args, kwargs): """Handle a notification.""" self.dispatch.call(method, args, kwargs)
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def config_name_from_full_name(full_name): """Extract the config name from a full resource name. >>> config_name_from_full_name('projects/my-proj/configs/my-config') "my-config" :type full_name: str :param full_name: The full resource name of a config. The full resource name looks like...
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def as_flat_array(iterables): '''Given a sequence of sequences, return a flat numpy array. Parameters ---------- iterables : sequence of sequence of number A sequence of tuples or lists containing numbers. Typically these come from something that represents each joint in a skeleton, lik...
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def _kwargs(self): """Keyword arguments for recreating the Shape from the vertices. """ return dict(color=self.color, velocity=self.velocity, colors=self.colors)
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def _wait_for_js(self): """ Class method added by the decorators to allow decorated classes to manually re-check JavaScript dependencies. Expect that `self` is a class that: 1) Has been decorated with either `js_defined` or `requirejs` 2) Has a `browser` property If either (1) or (2) i...
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def locked_coroutine(f): """ Method decorator that replace asyncio.coroutine that warranty that this specific method of this class instance will not we executed twice at the same time """ @asyncio.coroutine def new_function(*args, **kwargs): # In the instance of the class we will st...
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def replace_close(x, xhat, rtol=default_rtol, atol=default_atol, copy=True): ''' replace_close(x, xhat) yields x if x is not close to xhat and xhat otherwise. Closeness is determined by numpy's isclose(), and the atol and rtol options are passed along. The x and xhat arguments may be lists/arrays. ...
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def doFindAny(self, WHAT={}, SORT=[], SKIP=None, MAX=None, LOP='AND', **params): """This function will perform the command -findany.""" self._preFind(WHAT, SORT, SKIP, MAX, LOP) for key in params: self._addDBParam(key, params[key]) return self._doAction('-findany')
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def parse_slab_stats(slab_stats): """Convert output from memcached's `stats slabs` into a Python dict. Newlines are returned by memcached along with carriage returns (i.e. '\r\n'). >>> parse_slab_stats( "STAT 1:chunk_size 96\r\nSTAT 1:chunks_per_page 10922\r\nSTAT " "active_sla...
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def track_pageview(self, name, url, duration=0, properties=None, measurements=None): """Send information about the page viewed in the application (a web page for instance). Args: name (str). the name of the page that was viewed.\n url (str). the URL of the page that was viewed.\...
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def connected_sites( self, site_labels=None ): """ Searches the lattice to find sets of sites that are contiguously neighbouring. Mutually exclusive sets of contiguous sites are returned as Cluster objects. Args: site_labels (:obj:(List(Str)|Set(Str)|Str), optional): Labels ...
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def guess_python_env(): """Guess the default python env to use.""" version, major, minor = get_version_info() if 'PyPy' in version: return 'pypy3' if major == 3 else 'pypy' return 'py{major}{minor}'.format(major=major, minor=minor)
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