kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def multifile_dataframe(paths=['urbanslang{}of4.csv'.format(i) for i in range(1, 5)], header=0, index_col=None): """Like pandas.read_csv, but loads and concatenates (df.append(df)s) DataFrames together""" df = pd.DataFrame() for p in paths: df = df.append(read_csv(p, header=header, index_col=index_c...	[ "def", "multifile_dataframe", "(", "paths", "=", "[", "'urbanslang{}of4.csv'", ".", "format", "(", "i", ")", "for", "i", "in", "range", "(", "1", ",", "5", ")", "]", ",", "header", "=", "0", ",", "index_col", "=", "None", ")", ":", "df", "=", "pd",...	56.625	29.75
def read_fwf(self, args, kwargs): """Fetch the target and pass through to pandas.read_fwf. Don't provide the first argument of read_fwf(); it is supplied internally. """ import pandas t = self.resolved_url.get_resource().get_target() return pandas.read_fwf(t.fspath, args, ...	[ "def", "read_fwf", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "import", "pandas", "t", "=", "self", ".", "resolved_url", ".", "get_resource", "(", ")", ".", "get_target", "(", ")", "return", "pandas", ".", "read_fwf", "(", "t",...	35.666667	19.666667
def make_char_data_file(do_it_anyway=False): """ Build the compressed data file 'char_classes.dat' and write it to the current directory. If you run this, run it in Python 3.7.0 or later. It will run in earlier versions, but you won't get the Unicode 11 standard, leading to inconsistent behavio...	[ "def", "make_char_data_file", "(", "do_it_anyway", "=", "False", ")", ":", "if", "sys", ".", "hexversion", "<", "0x030700f0", "and", "not", "do_it_anyway", ":", "raise", "RuntimeError", "(", "\"This function should be run in Python 3.7.0 or later.\"", ")", "cclasses", ...	40.544444	15.877778
def attr_func(attrs, *kwargs): """Creates an "attribute function" for given attribute name(s). Resulting function will retrieve attributes with given names, in order, from the object that has been passed to it. For example, ``attr_func('a', 'b')(foo)`` yields the same as ``foo.a.b`` :param attrs...	[ "def", "attr_func", "(", "", "attrs", ",", "", "*", "kwargs", ")", ":", "ensure_argcount", "(", "attrs", ",", "min_", "=", "1", ")", "ensure_keyword_args", "(", "kwargs", ",", "optional", "=", "(", "'default'", ",", ")", ")", "# preprocess argument list:...	36.102041	17.816327
def cleanup_html(html): """ This 'cleans' the HTML, meaning that any page structure is removed (only the contents of <body> are used, if there is any <body). Also <ins> and <del> tags are removed. """ match = _body_re.search(html) if match: html = html[match.end():] match = _end_body_re...	[ "def", "cleanup_html", "(", "html", ")", ":", "match", "=", "_body_re", ".", "search", "(", "html", ")", "if", "match", ":", "html", "=", "html", "[", "match", ".", "end", "(", ")", ":", "]", "match", "=", "_end_body_re", ".", "search", "(", "html"...	35.416667	12.333333
def pypi_module_version_is_available(module, version): "Check whether module==version is available on pypi" # returns True/False (or None if failed to execute the check) # using a hack that when passing "module==" w/ no version number to pip # it "fails" and returns all the available versions in stderr...	[ "def", "pypi_module_version_is_available", "(", "module", ",", "version", ")", ":", "# returns True/False (or None if failed to execute the check)", "# using a hack that when passing \"module==\" w/ no version number to pip", "# it \"fails\" and returns all the available versions in stderr", "...	41.35	20.85
def z_axis_rotation(theta): """Generates a 3x3 rotation matrix for a rotation of angle theta about the z axis. Parameters ---------- theta : float amount to rotate, in radians Returns ------- :obj:`numpy.ndarray` of float A random...	[ "def", "z_axis_rotation", "(", "theta", ")", ":", "R", "=", "np", ".", "array", "(", "[", "[", "np", ".", "cos", "(", "theta", ")", ",", "-", "np", ".", "sin", "(", "theta", ")", ",", "0", "]", ",", "[", "np", ".", "sin", "(", "theta", ")",...	27.888889	15.722222
def trim(self, name): """When the name is too long, use the LHS or a random string instead.""" if len(name) > self.MAX_LENGTH and self.target: name = self.TEMP_VAR.format(self._name(self.target)) if len(name) > self.MAX_LENGTH: while True: name = '_{:04x}'.format(random.randint(0, 16 ** ...	[ "def", "trim", "(", "self", ",", "name", ")", ":", "if", "len", "(", "name", ")", ">", "self", ".", "MAX_LENGTH", "and", "self", ".", "target", ":", "name", "=", "self", ".", "TEMP_VAR", ".", "format", "(", "self", ".", "_name", "(", "self", ".",...	38.5	15.5
def read_docs(self, payloadType, els_client = None): """Fetches the list of documents associated with this entity from api.elsevier.com. If need be, splits the requests in batches to retrieve them all. Returns True if successful; else, False. NOTE: this method requires elevated API pe...	[ "def", "read_docs", "(", "self", ",", "payloadType", ",", "els_client", "=", "None", ")", ":", "if", "els_client", ":", "self", ".", "_client", "=", "els_client", "elif", "not", "self", ".", "client", ":", "raise", "ValueError", "(", "'''Entity object not cu...	57.085714	25.628571
def get_build_info(api_instance, build_id=None, keys=DEFAULT_BUILD_KEYS, wait=False): """ print build info about a job """ build = (api_instance.get_build(build_id) if build_id else api_instance.get_last_build()) output = "" if wait: build.block_until_complete() ...	[ "def", "get_build_info", "(", "api_instance", ",", "build_id", "=", "None", ",", "keys", "=", "DEFAULT_BUILD_KEYS", ",", "wait", "=", "False", ")", ":", "build", "=", "(", "api_instance", ".", "get_build", "(", "build_id", ")", "if", "build_id", "else", "a...	28.36	19.8
def RandomNormalInitializer(stddev=1e-2): """An initializer function for random normal coefficients.""" def init(shape, rng): return (stddev * backend.random.normal(rng, shape)).astype('float32') return init	[ "def", "RandomNormalInitializer", "(", "stddev", "=", "1e-2", ")", ":", "def", "init", "(", "shape", ",", "rng", ")", ":", "return", "(", "stddev", "*", "backend", ".", "random", ".", "normal", "(", "rng", ",", "shape", ")", ")", ".", "astype", "(", ...	42.6	15.6
def auto_connect(handler, timeout=5, not_found=None, event_loop=None): """Short method for connecting to a device. This is a convenience method that create an event loop, auto discovers devices, picks the first device found, connects to it and passes it to a user provided handler. An optional error han...	[ "def", "auto_connect", "(", "handler", ",", "timeout", "=", "5", ",", "not_found", "=", "None", ",", "event_loop", "=", "None", ")", ":", "# A coroutine is used so we can connect to the device while being inside", "# the event loop", "async", "def", "_handle", "(", "l...	39.612903	20.580645
def sort_args(args): """Put flags at the end""" args = args.copy() flags = [i for i in args if FLAGS_RE.match(i[1])] for i in flags: args.remove(i) return args + flags	[ "def", "sort_args", "(", "args", ")", ":", "args", "=", "args", ".", "copy", "(", ")", "flags", "=", "[", "i", "for", "i", "in", "args", "if", "FLAGS_RE", ".", "match", "(", "i", "[", "1", "]", ")", "]", "for", "i", "in", "flags", ":", "args"...	21	20.777778
def save_intraday(data: pd.DataFrame, ticker: str, dt, typ='TRADE'): """ Check whether data is done for the day and save Args: data: data ticker: ticker dt: date typ: [TRADE, BID, ASK, BID_BEST, ASK_BEST, BEST_BID, BEST_ASK] Examples: >>> os.environ['BBG_ROOT'] ...	[ "def", "save_intraday", "(", "data", ":", "pd", ".", "DataFrame", ",", "ticker", ":", "str", ",", "dt", ",", "typ", "=", "'TRADE'", ")", ":", "cur_dt", "=", "pd", ".", "Timestamp", "(", "dt", ")", ".", "strftime", "(", "'%Y-%m-%d'", ")", "logger", ...	34.553191	20.638298
def fit(self, X, y, cost_mat, sample_weight=None): """Build a Bagging ensemble of estimators from the training set (X, y). Parameters ---------- X : {array-like, sparse matrix} of shape = [n_samples, n_features] The training input samples. Sparse matrices are accepted only i...	[ "def", "fit", "(", "self", ",", "X", ",", "y", ",", "cost_mat", ",", "sample_weight", "=", "None", ")", ":", "random_state", "=", "check_random_state", "(", "self", ".", "random_state", ")", "# Convert data", "# X, y = check_X_y(X, y, ['csr', 'csc', 'coo']) # Not i...	37.23913	23.826087
def ip_addrs6(interface=None, include_loopback=False, cidr=None): ''' Returns a list of IPv6 addresses assigned to the host. interface Only IP addresses from that interface will be returned. include_loopback : False Include loopback ::1 IPv6 address. cidr Describes subnet ...	[ "def", "ip_addrs6", "(", "interface", "=", "None", ",", "include_loopback", "=", "False", ",", "cidr", "=", "None", ")", ":", "addrs", "=", "salt", ".", "utils", ".", "network", ".", "ip_addrs6", "(", "interface", "=", "interface", ",", "include_loopback",...	28.310345	25.965517
def run(self): """ Perform the actual QChem run. Returns: (subprocess.Popen) Used for monitoring. """ qclog = open(self.qclog_file, 'w') p = subprocess.Popen(self.current_command, stdout=qclog) return p	[ "def", "run", "(", "self", ")", ":", "qclog", "=", "open", "(", "self", ".", "qclog_file", ",", "'w'", ")", "p", "=", "subprocess", ".", "Popen", "(", "self", ".", "current_command", ",", "stdout", "=", "qclog", ")", "return", "p" ]	26.2	15.4
def get_by_number(self, number: int) -> Optional[DataObjectReplica]: """ Gets the data object replica in this collection with the given number. Will return `None` if such replica does not exist. :param number: the number of the data object replica to get :return: the data object ...	[ "def", "get_by_number", "(", "self", ",", "number", ":", "int", ")", "->", "Optional", "[", "DataObjectReplica", "]", ":", "return", "self", ".", "_data", ".", "get", "(", "number", ",", "None", ")" ]	52.125	24.875
def ph_basename(self, ph_type): """ Return the base name for a placeholder of ph_type in this shape collection. There is some variance between slide types, for example a notes slide uses a different name for the body placeholder, so this method can be overriden by subclasses. ...	[ "def", "ph_basename", "(", "self", ",", "ph_type", ")", ":", "return", "{", "PP_PLACEHOLDER", ".", "BITMAP", ":", "'ClipArt Placeholder'", ",", "PP_PLACEHOLDER", ".", "BODY", ":", "'Text Placeholder'", ",", "PP_PLACEHOLDER", ".", "CENTER_TITLE", ":", "'Title'", ...	52.333333	19.333333
def extract_traits(self, entity): """ Extract data required to classify entity. :param object entity: :return: namedtuple consisting of characteristic traits and match flag :rtype: matchbox.box.Trait """ traits = getattr(entity, self._characteristic) if t...	[ "def", "extract_traits", "(", "self", ",", "entity", ")", ":", "traits", "=", "getattr", "(", "entity", ",", "self", ".", "_characteristic", ")", "if", "traits", "is", "not", "None", "and", "isinstance", "(", "traits", ",", "Hashable", ")", ":", "traits"...	33.733333	17.066667
def set(self, args, *kwargs): ''' d.set(...) yields a copy of the IMap object d; the ... may be replaced with either nothing (in which case d is returned) or a list of 0 or more dictionaries followed by a lsit of zero or more keyword arguments. These dictionaries and keywords arguments...	[ "def", "set", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "args", "=", "merge", "(", "args", ",", "kwargs", ")", "if", "len", "(", "args", ")", "==", "0", ":", "return", "self", "affs", "=", "self", ".", "afferents", "pln"...	54.416667	25.083333
def _bisect_kmeans(X, n_clusters, n_trials, max_iter, tol): """ Apply Bisecting Kmeans clustering to reach n_clusters number of clusters """ membs = np.empty(shape=X.shape[0], dtype=int) centers = dict() #np.empty(shape=(n_clusters,X.shape[1]), dtype=float) sse_arr = dict() #-1.0*np.ones(sha...	[ "def", "_bisect_kmeans", "(", "X", ",", "n_clusters", ",", "n_trials", ",", "max_iter", ",", "tol", ")", ":", "membs", "=", "np", ".", "empty", "(", "shape", "=", "X", ".", "shape", "[", "0", "]", ",", "dtype", "=", "int", ")", "centers", "=", "d...	41.6875	20.520833
def encrypt_file(file, keys=secretKeys()): '''Encrypt file data with the same method as the Send browser/js client''' key = keys.encryptKey iv = keys.encryptIV encData = tempfile.SpooledTemporaryFile(max_size=SPOOL_SIZE, mode='w+b') cipher = Cryptodome.Cipher.AES.new(key, Cryptodome.Cipher.AES.MODE_...	[ "def", "encrypt_file", "(", "file", ",", "keys", "=", "secretKeys", "(", ")", ")", ":", "key", "=", "keys", ".", "encryptKey", "iv", "=", "keys", ".", "encryptIV", "encData", "=", "tempfile", ".", "SpooledTemporaryFile", "(", "max_size", "=", "SPOOL_SIZE",...	31.210526	23.210526
def convert_to_array(pmap, nsites, imtls, inner_idx=0): """ Convert the probability map into a composite array with header of the form PGA-0.1, PGA-0.2 ... :param pmap: probability map :param nsites: total number of sites :param imtls: a DictArray with IMT and levels :returns: a composite a...	[ "def", "convert_to_array", "(", "pmap", ",", "nsites", ",", "imtls", ",", "inner_idx", "=", "0", ")", ":", "lst", "=", "[", "]", "# build the export dtype, of the form PGA-0.1, PGA-0.2 ...", "for", "imt", ",", "imls", "in", "imtls", ".", "items", "(", ")", "...	34.75	13.75
def create_request_url(self, interface, method, version, parameters): """Create the URL to submit to the Steam Web API interface: Steam Web API interface containing methods. method: The method to call. version: The version of the method. paramters: Parameters to supply to the me...	[ "def", "create_request_url", "(", "self", ",", "interface", ",", "method", ",", "version", ",", "parameters", ")", ":", "if", "'format'", "in", "parameters", ":", "parameters", "[", "'key'", "]", "=", "self", ".", "apikey", "else", ":", "parameters", ".", ...	39.529412	17.117647
def codestr2rst(codestr, lang='python'): """Return reStructuredText code block from code string""" code_directive = "\n.. code-block:: {0}\n\n".format(lang) indented_block = indent(codestr, ' ' * 4) return code_directive + indented_block	[ "def", "codestr2rst", "(", "codestr", ",", "lang", "=", "'python'", ")", ":", "code_directive", "=", "\"\\n.. code-block:: {0}\\n\\n\"", ".", "format", "(", "lang", ")", "indented_block", "=", "indent", "(", "codestr", ",", "' '", "*", "4", ")", "return", "c...	49.8	5.6
def get_env_path(cls): """Returns PATH environment variable updated to run uwsgiconf in (e.g. for virtualenv). :rtype: str\|unicode """ return os.path.dirname(Finder.python()) + os.pathsep + os.environ['PATH']	[ "def", "get_env_path", "(", "cls", ")", ":", "return", "os", ".", "path", ".", "dirname", "(", "Finder", ".", "python", "(", ")", ")", "+", "os", ".", "pathsep", "+", "os", ".", "environ", "[", "'PATH'", "]" ]	34.714286	17.428571
def _update_assessment_parts_map(self, part_list): """Updates the part map. Called before question list gets updated if it is determined that the sections assessmentPart map is out of date with the current part list. """ for part in part_list: # perhaps look for a "...	[ "def", "_update_assessment_parts_map", "(", "self", ",", "part_list", ")", ":", "for", "part", "in", "part_list", ":", "# perhaps look for a \"level offset\"?", "level", "=", "part", ".", "_level_in_section", "# plus or minus \"level offset\"?", "if", "str", "(", "part"...	45.5	21
def _set_zfcp_multipath(self): """sles""" # modprobe DM multipath kernel module modprobe = 'modprobe dm_multipath' conf_file = '#blacklist {\n' conf_file += '#\tdevnode \\"*\\"\n' conf_file += '#}\n' conf_cmd = 'echo -e "%s" > /etc/multipath.conf' % conf_file ...	[ "def", "_set_zfcp_multipath", "(", "self", ")", ":", "# modprobe DM multipath kernel module", "modprobe", "=", "'modprobe dm_multipath'", "conf_file", "=", "'#blacklist {\\n'", "conf_file", "+=", "'#\\tdevnode \\\\\"*\\\\\"\\n'", "conf_file", "+=", "'#}\\n'", "conf_cmd", "=",...	38	6.833333
def split(cls, entry): """Split a declaration name into a (declaration, subpath) tuple. Examples: >>> DeclarationSet.split('foo__bar') ('foo', 'bar') >>> DeclarationSet.split('foo') ('foo', None) >>> DeclarationSet.split('foo__bar__baz') ('foo', 'bar__baz...	[ "def", "split", "(", "cls", ",", "entry", ")", ":", "if", "enums", ".", "SPLITTER", "in", "entry", ":", "return", "entry", ".", "split", "(", "enums", ".", "SPLITTER", ",", "1", ")", "else", ":", "return", "(", "entry", ",", "None", ")" ]	30.2	12.933333
def _run_xmlsec(self, com_list, extra_args): """ Common code to invoke xmlsec and parse the output. :param com_list: Key-value parameter list for xmlsec :param extra_args: Positional parameters to be appended after all key-value parameters :result: Whatever xmlsec wro...	[ "def", "_run_xmlsec", "(", "self", ",", "com_list", ",", "extra_args", ")", ":", "with", "NamedTemporaryFile", "(", "suffix", "=", "'.xml'", ",", "delete", "=", "self", ".", "_xmlsec_delete_tmpfiles", ")", "as", "ntf", ":", "com_list", ".", "extend", "(", ...	39.464286	18.321429
def visit_module(self, node): """ A interface will be called when visiting a module. @param node: node of current module """ if not node.file_stream: # Failed to open the module return isFirstLineOfComment = True isDocString = False ...	[ "def", "visit_module", "(", "self", ",", "node", ")", ":", "if", "not", "node", ".", "file_stream", ":", "# Failed to open the module", "return", "isFirstLineOfComment", "=", "True", "isDocString", "=", "False", "lines", "=", "node", ".", "stream", "(", ")", ...	40.707317	14.097561
def jobSetFields(self, jobID, fields, useConnectionID=True, ignoreUnchanged=False): """ Change the values of 1 or more fields in a job. Here, 'fields' is a dict with the name/value pairs to change. The names are the public names of the fields (camelBack, not the lower_case_only form as st...	[ "def", "jobSetFields", "(", "self", ",", "jobID", ",", "fields", ",", "useConnectionID", "=", "True", ",", "ignoreUnchanged", "=", "False", ")", ":", "# Form the sequecce of key=value strings that will go into the", "# request", "assignmentExpressions", "=", "','", "."...	38.843137	20.254902
def get_gfe(self, annotation, locus): """ creates GFE from a sequence annotation :param locus: The gene locus :type locus: ``str`` :param annotation: An sequence annotation object :type annotation: ``List`` :rtype: ``List`` Returns: The GFE ...	[ "def", "get_gfe", "(", "self", ",", "annotation", ",", "locus", ")", ":", "features", "=", "[", "]", "accessions", "=", "{", "}", "for", "feat", "in", "annotation", ".", "annotation", ":", "if", "isinstance", "(", "annotation", ".", "annotation", "[", ...	44.792857	23.992857
def findCaller(self): """ Find the stack frame of the caller so that we can note the source file name, line number and function name. """ f = currentframe() #On some versions of IronPython, currentframe() returns None if #IronPython isn't run with -X:Frames. ...	[ "def", "findCaller", "(", "self", ")", ":", "f", "=", "currentframe", "(", ")", "#On some versions of IronPython, currentframe() returns None if", "#IronPython isn't run with -X:Frames.", "if", "f", "is", "not", "None", ":", "f", "=", "f", ".", "f_back", "rv", "=", ...	35.5	14.6
def register_hit_type( self, title, description, reward, duration_hours, keywords, qualifications ): """Register HIT Type for this HIT and return the type's ID, which is required for creating a HIT. """ reward = str(reward) duration_secs = int(datetime.timedelta(hours...	[ "def", "register_hit_type", "(", "self", ",", "title", ",", "description", ",", "reward", ",", "duration_hours", ",", "keywords", ",", "qualifications", ")", ":", "reward", "=", "str", "(", "reward", ")", "duration_secs", "=", "int", "(", "datetime", ".", ...	37.421053	15.526316
def load(self, ds, verbose=False): """ Load a CLDF dataset into the database. :param dataset: :return: """ try: self.fetchone('select ID from dataset') except sqlite3.OperationalError: self.create(force=True) self.unload(ds) ...	[ "def", "load", "(", "self", ",", "ds", ",", "verbose", "=", "False", ")", ":", "try", ":", "self", ".", "fetchone", "(", "'select ID from dataset'", ")", "except", "sqlite3", ".", "OperationalError", ":", "self", ".", "create", "(", "force", "=", "True",...	41.580357	19.098214
def initialize(self, argv=None): """initialize the app""" super(BaseParallelApplication, self).initialize(argv) self.to_work_dir() self.reinit_logging()	[ "def", "initialize", "(", "self", ",", "argv", "=", "None", ")", ":", "super", "(", "BaseParallelApplication", ",", "self", ")", ".", "initialize", "(", "argv", ")", "self", ".", "to_work_dir", "(", ")", "self", ".", "reinit_logging", "(", ")" ]	36	10.8
def recent_update_frequencies(self): """ Returns the 10 most recent update frequencies. The given frequencies are computed as short-term frequencies! The 0th element of the list corresponds to the most recent frequency. """ return list(reversed([(1.0 / p) for p in numpy.diff(sel...	[ "def", "recent_update_frequencies", "(", "self", ")", ":", "return", "list", "(", "reversed", "(", "[", "(", "1.0", "/", "p", ")", "for", "p", "in", "numpy", ".", "diff", "(", "self", ".", "_recent_updates", ")", "]", ")", ")" ]	47.857143	22
def process_document(self, doc): """ Add your code for processing the document """ descriptions = doc.select_segments("projects[].description") projects = doc.select_segments("projects[]") for d, p in zip(descriptions, projects): # First phase of extracti...	[ "def", "process_document", "(", "self", ",", "doc", ")", ":", "descriptions", "=", "doc", ".", "select_segments", "(", "\"projects[].description\"", ")", "projects", "=", "doc", ".", "select_segments", "(", "\"projects[]\"", ")", "for", "d", ",", "p", "in", ...	36.136364	17.5
def invert(self): """ Invert the price (e.g. go from ``USD/BTS`` into ``BTS/USD``) """ tmp = self["quote"] self["quote"] = self["base"] self["base"] = tmp if "for_sale" in self and self["for_sale"]: self["for_sale"] = self.amount_class( self["f...	[ "def", "invert", "(", "self", ")", ":", "tmp", "=", "self", "[", "\"quote\"", "]", "self", "[", "\"quote\"", "]", "=", "self", "[", "\"base\"", "]", "self", "[", "\"base\"", "]", "=", "tmp", "if", "\"for_sale\"", "in", "self", "and", "self", "[", "...	36.636364	14.909091
def predict(self,param_dict): """ predict new waveforms using multivar fit """ encoder_dict = self._designmatrix_object.encoder X, col_names = self._designmatrix_object.run_encoder(param_dict, encoder_dict) # compute predictions Y_pred = self._compute_prediction(X) return...	[ "def", "predict", "(", "self", ",", "param_dict", ")", ":", "encoder_dict", "=", "self", ".", "_designmatrix_object", ".", "encoder", "X", ",", "col_names", "=", "self", ".", "_designmatrix_object", ".", "run_encoder", "(", "param_dict", ",", "encoder_dict", "...	45.857143	15.285714
def element_screen_center(self, element): """ :returns: The center point of the element. :rtype: class:`dict` with the field "left" set to the X coordinate and the field "top" set to the Y coordinate. """ pos = self.element_screen_position(element...	[ "def", "element_screen_center", "(", "self", ",", "element", ")", ":", "pos", "=", "self", ".", "element_screen_position", "(", "element", ")", "size", "=", "element", ".", "size", "pos", "[", "\"top\"", "]", "+=", "int", "(", "size", "[", "\"height\"", ...	34.461538	12.461538
def malloc(func): """ Decorator Execute tracemalloc """ def _f(args, kwargs): print("\n<<<---") tracemalloc.start() res = func(args, **kwargs) snapshot = tracemalloc.take_snapshot() top_stats = snapshot.statistics('lineno') print("[ Top 10 ]") ...	[ "def", "malloc", "(", "func", ")", ":", "def", "_f", "(", "", "args", ",", "", "", "kwargs", ")", ":", "print", "(", "\"\\n<<<---\"", ")", "tracemalloc", ".", "start", "(", ")", "res", "=", "func", "(", "", "args", ",", "", "", "kwargs", ...	34.142857	13.952381
def create_user(self, claims): """ Create the user if it doesn't exist yet Args: claims (dict): claims from the access token Returns: django.contrib.auth.models.User: A Django user """ # Create the user username_claim = settings.USERNAME_...	[ "def", "create_user", "(", "self", ",", "claims", ")", ":", "# Create the user", "username_claim", "=", "settings", ".", "USERNAME_CLAIM", "usermodel", "=", "get_user_model", "(", ")", "user", ",", "created", "=", "usermodel", ".", "objects", ".", "get_or_create...	31.619048	18.285714
def InverseGamma(alpha: vertex_constructor_param_types, beta: vertex_constructor_param_types, label: Optional[str]=None) -> Vertex: """ One to one constructor for mapping some shape of alpha and beta to alpha matching shaped Inverse Gamma. :param alpha: the alpha of the Inverse Gamma with either th...	[ "def", "InverseGamma", "(", "alpha", ":", "vertex_constructor_param_types", ",", "beta", ":", "vertex_constructor_param_types", ",", "label", ":", "Optional", "[", "str", "]", "=", "None", ")", "->", "Vertex", ":", "return", "Double", "(", "context", ".", "jvm...	68.777778	44.111111
def invoke(self, args, initial_invocation_data=None, out_file=None): """ Invoke a command. :param args: The arguments that represent the command :type args: list, tuple :param initial_invocation_data: Prime the in memory collection of key-value data for this invocation. :type in...	[ "def", "invoke", "(", "self", ",", "args", ",", "initial_invocation_data", "=", "None", ",", "out_file", "=", "None", ")", ":", "from", ".", "util", "import", "CommandResultItem", "if", "not", "isinstance", "(", "args", ",", "(", "list", ",", "tuple", ")...	47.076923	21.115385
def main(): """main program body""" if len( sys.argv ) != 2: print __doc__ % sys.argv[0] sys.exit( 1 ) file = open( sys.argv[1], "w\n" ) write = file.write count_sid = len( sid_standard_names ) # `mac_extras' contains the list of glyph names in the Macintosh standard # encoding which are not ...	[ "def", "main", "(", ")", ":", "if", "len", "(", "sys", ".", "argv", ")", "!=", "2", ":", "print", "__doc__", "%", "sys", ".", "argv", "[", "0", "]", "sys", ".", "exit", "(", "1", ")", "file", "=", "open", "(", "sys", ".", "argv", "[", "1", ...	26.239669	26.082645
def fmod(x, y, context=None): """ Return ``x`` reduced modulo ``y``. Returns the value of x - n * y, where n is the integer quotient of x divided by y, rounded toward zero. Special values are handled as described in Section F.9.7.1 of the ISO C99 standard: If x is infinite or y is zero, the re...	[ "def", "fmod", "(", "x", ",", "y", ",", "context", "=", "None", ")", ":", "return", "_apply_function_in_current_context", "(", "BigFloat", ",", "mpfr", ".", "mpfr_fmod", ",", "(", "BigFloat", ".", "_implicit_convert", "(", "x", ")", ",", "BigFloat", ".", ...	30.636364	20.454545
def alignment_chart(data): """Make the HighCharts HTML to plot the alignment rates """ keys = OrderedDict() keys['reads_mapped'] = {'color': '#437bb1', 'name': 'Mapped'} keys['reads_unmapped'] = {'color': '#b1084c', 'name': 'Unmapped'} # Config for the plot plot_conf = { 'id': 'samtools...	[ "def", "alignment_chart", "(", "data", ")", ":", "keys", "=", "OrderedDict", "(", ")", "keys", "[", "'reads_mapped'", "]", "=", "{", "'color'", ":", "'#437bb1'", ",", "'name'", ":", "'Mapped'", "}", "keys", "[", "'reads_unmapped'", "]", "=", "{", "'color...	36.357143	17.142857
def get_content_string(self): """ Ge thet Clusterpoint response's content as a string. """ return ''.join([ET.tostring(element, encoding="utf-8", method="xml") for element in list(self._content)])	[ "def", "get_content_string", "(", "self", ")", ":", "return", "''", ".", "join", "(", "[", "ET", ".", "tostring", "(", "element", ",", "encoding", "=", "\"utf-8\"", ",", "method", "=", "\"xml\"", ")", "for", "element", "in", "list", "(", "self", ".", ...	58.25	16.75
def keys(self): """ :returns: a list of usable keys :rtype: list """ keys = list() for attribute_name, type_instance in inspect.getmembers(self): # ignore parameters with __ and if they are methods if attribute_name.startswith('__') or inspect....	[ "def", "keys", "(", "self", ")", ":", "keys", "=", "list", "(", ")", "for", "attribute_name", ",", "type_instance", "in", "inspect", ".", "getmembers", "(", "self", ")", ":", "# ignore parameters with __ and if they are methods", "if", "attribute_name", ".", "st...	21.789474	25.157895
def index_list(self): ''' List all cube indexes :param collection: cube name :param owner: username of cube owner ''' logger.info('Listing indexes') _ix = {} _i = self.inspector for tbl in _i.get_table_names(): _ix.setdefault(tbl, []) ...	[ "def", "index_list", "(", "self", ")", ":", "logger", ".", "info", "(", "'Listing indexes'", ")", "_ix", "=", "{", "}", "_i", "=", "self", ".", "inspector", "for", "tbl", "in", "_i", ".", "get_table_names", "(", ")", ":", "_ix", ".", "setdefault", "(...	26.866667	13.933333
def add_filepath(self, filepath, fullpath, copy=False): """ Bespoke function to add filepath & fullpath to manifest object without hashing. Can defer hashing until all files are added. Hashing all at once is much faster as overhead for threading is spread over all files "...	[ "def", "add_filepath", "(", "self", ",", "filepath", ",", "fullpath", ",", "copy", "=", "False", ")", ":", "# Ignore directories", "if", "os", ".", "path", ".", "isdir", "(", "fullpath", ")", ":", "return", "False", "# Ignore anything matching the ignore pattern...	33.5	19.1875
def _packto(self, stream): ''' Pack current struct into stream. For parser internal use. :param stream: a buffered stream (File or BytesIO) :return: packed bytes length ''' #self._logger.log(logging.DEBUG, 'packing %r', self) total_size = 0 ...	[ "def", "_packto", "(", "self", ",", "stream", ")", ":", "#self._logger.log(logging.DEBUG, 'packing %r', self)", "total_size", "=", "0", "current", "=", "self", "while", "current", "is", "not", "None", ":", "total_size", "+=", "current", ".", "_parser", ".", "pac...	33.789474	17.368421
def _einsum_helper(input_shapes, output_shape, mesh_impl): """Returns slicewise function and reduced mesh dimensions. Assumes the output shape contains no new dimensions. Args: input_shapes: a list of Shapes output_shape: a Shape mesh_impl: a MeshImpl Returns: einsum_slice_fn: a function from ...	[ "def", "_einsum_helper", "(", "input_shapes", ",", "output_shape", ",", "mesh_impl", ")", ":", "input_shape_union", "=", "_shape_union", "(", "input_shapes", ")", "total_num_dims", "=", "input_shape_union", ".", "ndims", "# list of input shapes that contain all dimensions."...	40.65	17.025
def store_nulldata(self, hexdata, wifs, change_address=None, txouts=None, fee=10000, lock_time=0): """Store <hexdata> in blockchain and return new txid. Utxos taken from <wifs> and change sent to <change_address>. <wifs>: '["privatekey_in_wif_format", ...]' """ ...	[ "def", "store_nulldata", "(", "self", ",", "hexdata", ",", "wifs", ",", "change_address", "=", "None", ",", "txouts", "=", "None", ",", "fee", "=", "10000", ",", "lock_time", "=", "0", ")", ":", "rawtx", "=", "self", ".", "create_tx", "(", "txouts", ...	52.272727	14.090909
def _set_axis_ticks(self, axis, ticks, log=False, rotation=0): """ Allows setting the ticks for a particular axis either with a tuple of ticks, a tick locator object, an integer number of ticks, a list of tuples containing positions and labels or a list of positions. Also support...	[ "def", "_set_axis_ticks", "(", "self", ",", "axis", ",", "ticks", ",", "log", "=", "False", ",", "rotation", "=", "0", ")", ":", "if", "isinstance", "(", "ticks", ",", "(", "list", ",", "tuple", ")", ")", "and", "all", "(", "isinstance", "(", "l", ...	43.90625	12.71875
def median(timeseries, segmentlength, **kwargs): """Calculate a PSD using Welch's method with a median average """ if scipy_version <= '1.1.9999': raise ValueError( "median average PSD estimation requires scipy >= 1.2.0", ) kwargs.setdefault('average', 'median') return we...	[ "def", "median", "(", "timeseries", ",", "segmentlength", ",", "", "", "kwargs", ")", ":", "if", "scipy_version", "<=", "'1.1.9999'", ":", "raise", "ValueError", "(", "\"median average PSD estimation requires scipy >= 1.2.0\"", ",", ")", "kwargs", ".", "setdefault...	39.111111	11.333333
def parse(self, stream): """Parses the keys + values from a config file.""" items = OrderedDict() for i, line in enumerate(stream): line = line.strip() if not line or line[0] in ["#", ";", "["] or line.startswith("---"): continue white_space =...	[ "def", "parse", "(", "self", ",", "stream", ")", ":", "items", "=", "OrderedDict", "(", ")", "for", "i", ",", "line", "in", "enumerate", "(", "stream", ")", ":", "line", "=", "line", ".", "strip", "(", ")", "if", "not", "line", "or", "line", "[",...	38.470588	20.411765
def list_nodes_full(conn=None, call=None): ''' Return a list of the VMs that are on the provider, with all fields ''' if call == 'action': raise SaltCloudSystemExit( 'The list_nodes_full function must be called with -f or --function.' ) if not conn: conn = get_co...	[ "def", "list_nodes_full", "(", "conn", "=", "None", ",", "call", "=", "None", ")", ":", "if", "call", "==", "'action'", ":", "raise", "SaltCloudSystemExit", "(", "'The list_nodes_full function must be called with -f or --function.'", ")", "if", "not", "conn", ":", ...	30.434783	24.521739
def logsumexp(arr,axis=0): """Faster logsumexp?""" minarr= numpy.amax(arr,axis=axis) if axis == 1: minarr= numpy.reshape(minarr,(arr.shape[0],1)) if axis == 0: minminarr= numpy.tile(minarr,(arr.shape[0],1)) elif axis == 1: minminarr= numpy.tile(minarr,(1,arr.shape[1])) el...	[ "def", "logsumexp", "(", "arr", ",", "axis", "=", "0", ")", ":", "minarr", "=", "numpy", ".", "amax", "(", "arr", ",", "axis", "=", "axis", ")", "if", "axis", "==", "1", ":", "minarr", "=", "numpy", ".", "reshape", "(", "minarr", ",", "(", "arr...	38.375	18.6875
def calculate_gamma_matrix(magnetic_states, Omega=1, einsteinA=None, numeric=True): ur"""Calculate the matrix of decay between states. This function calculates the matrix :math:`\gamma_{ij}` of decay rates between states :math:`\|i\rangle` and :math:`\|j\rangle` (in the units s...	[ "def", "calculate_gamma_matrix", "(", "magnetic_states", ",", "Omega", "=", "1", ",", "einsteinA", "=", "None", ",", "numeric", "=", "True", ")", ":", "Ne", "=", "len", "(", "magnetic_states", ")", "fine_states", "=", "[", "]", "fine_map", "=", "{", "}",...	31.488688	18.461538
def signif(self, digits=6): """ Round doubles/floats to the given number of significant digits. :param int digits: Number of significant digits to retain. :returns: new H2OFrame with rounded values from the original frame. """ return H2OFrame._expr(expr=ExprNode("signif"...	[ "def", "signif", "(", "self", ",", "digits", "=", "6", ")", ":", "return", "H2OFrame", ".", "_expr", "(", "expr", "=", "ExprNode", "(", "\"signif\"", ",", "self", ",", "digits", ")", ",", "cache", "=", "self", ".", "_ex", ".", "_cache", ")" ]	44	24.5
def _get_mount_methods(self, disk_type): """Finds which mount methods are suitable for the specified disk type. Returns a list of all suitable mount methods. """ if self.disk_mounter == 'auto': methods = [] def add_method_if_exists(method): if (me...	[ "def", "_get_mount_methods", "(", "self", ",", "disk_type", ")", ":", "if", "self", ".", "disk_mounter", "==", "'auto'", ":", "methods", "=", "[", "]", "def", "add_method_if_exists", "(", "method", ")", ":", "if", "(", "method", "==", "'avfs'", "and", "_...	40.21875	11.21875
def to_dict(self): """Transform the date-range to a dict.""" d = {} d['start'] = date_to_str(self.start) d['end'] = date_to_str(self.end) return d	[ "def", "to_dict", "(", "self", ")", ":", "d", "=", "{", "}", "d", "[", "'start'", "]", "=", "date_to_str", "(", "self", ".", "start", ")", "d", "[", "'end'", "]", "=", "date_to_str", "(", "self", ".", "end", ")", "return", "d" ]	31	12.666667
def pack_apply_message(f, args, kwargs, buffer_threshold=MAX_BYTES, item_threshold=MAX_ITEMS): """Pack up a function, args, and kwargs to be sent over the wire. Each element of args/kwargs will be canned for special treatment, but inspection will not go any deeper than that. Any object whose data is l...	[ "def", "pack_apply_message", "(", "f", ",", "args", ",", "kwargs", ",", "buffer_threshold", "=", "MAX_BYTES", ",", "item_threshold", "=", "MAX_ITEMS", ")", ":", "arg_bufs", "=", "list", "(", "chain", ".", "from_iterable", "(", "serialize_object", "(", "arg", ...	37.266667	25.466667
def coloured_network(network, setup, filename): """ Plots a coloured (hyper-)graph to a dot file Parameters ---------- network : object An object implementing a method `__plot__` which must return the `networkx.MultiDiGraph`_ instance to be coloured. Typically, it will be an instanc...	[ "def", "coloured_network", "(", "network", ",", "setup", ",", "filename", ")", ":", "NODES_ATTR", "=", "{", "'DEFAULT'", ":", "{", "'color'", ":", "'black'", ",", "'fillcolor'", ":", "'white'", ",", "'style'", ":", "'filled, bold'", ",", "'fontname'", ":", ...	40.848485	27.030303
def get_keyvault(access_token, subscription_id, rgname, vault_name): '''Gets details about the named key vault. Args: access_token (str): A valid Azure authentication token. subscription_id (str): Azure subscription id. rgname (str): Azure resource group name. vault_name (str): ...	[ "def", "get_keyvault", "(", "access_token", ",", "subscription_id", ",", "rgname", ",", "vault_name", ")", ":", "endpoint", "=", "''", ".", "join", "(", "[", "get_rm_endpoint", "(", ")", ",", "'/subscriptions/'", ",", "subscription_id", ",", "'/resourcegroups/'"...	40.833333	19.944444
def calc_signal_sum(self, measure='LFP'): """ Superimpose each cell's contribution to the compound population signal, i.e., the population CSD or LFP Parameters ---------- measure : str {'LFP', 'CSD'}: Either 'LFP' or 'CSD'. Returns -------...	[ "def", "calc_signal_sum", "(", "self", ",", "measure", "=", "'LFP'", ")", ":", "#compute the total LFP of cells on this RANK", "if", "self", ".", "RANK_CELLINDICES", ".", "size", ">", "0", ":", "for", "i", ",", "cellindex", "in", "enumerate", "(", "self", ".",...	29.575	21.225
def _check_path(self, src, path_type, dest=None, force=False): """Check a new destination path in the archive. Since it is possible for multiple plugins to collect the same paths, and since plugins can now run concurrently, it is possible for two threads to race in archive m...	[ "def", "_check_path", "(", "self", ",", "src", ",", "path_type", ",", "dest", "=", "None", ",", "force", "=", "False", ")", ":", "dest", "=", "dest", "or", "self", ".", "dest_path", "(", "src", ")", "if", "path_type", "==", "P_DIR", ":", "dest_dir", ...	45.216216	22.432432
def expand(sconf, cwd=None, parent=None): """Return config with shorthand and inline properties expanded. This is necessary to keep the code in the :class:`WorkspaceBuilder` clean and also allow for neat, short-hand configurations. As a simple example, internally, tmuxp expects that config options ...	[ "def", "expand", "(", "sconf", ",", "cwd", "=", "None", ",", "parent", "=", "None", ")", ":", "# Note: cli.py will expand configs relative to project's config directory", "# for the first cwd argument.", "if", "not", "cwd", ":", "cwd", "=", "os", ".", "getcwd", "(",...	36.15493	20.647887
def update_variogram_model(self, variogram_model, variogram_parameters=None, variogram_function=None, nlags=6, weight=False, anisotropy_scaling_y=1., anisotropy_scaling_z=1., anisotropy_angle_x=0., anisotropy_angle_y=0., ...	[ "def", "update_variogram_model", "(", "self", ",", "variogram_model", ",", "variogram_parameters", "=", "None", ",", "variogram_function", "=", "None", ",", "nlags", "=", "6", ",", "weight", "=", "False", ",", "anisotropy_scaling_y", "=", "1.", ",", "anisotropy_...	55.083969	22.793893
def configure_logging(verbosity): '''configure logging via verbosity level of between 0 and 2 corresponding to log levels warning, info and debug respectfully.''' log_level = max(logging.DEBUG, logging.WARNING - logging.DEBUG*verbosity) logging.basicConfig( stream=sys.stderr, level=log_level, ...	[ "def", "configure_logging", "(", "verbosity", ")", ":", "log_level", "=", "max", "(", "logging", ".", "DEBUG", ",", "logging", ".", "WARNING", "-", "logging", ".", "DEBUG", "*", "verbosity", ")", "logging", ".", "basicConfig", "(", "stream", "=", "sys", ...	38.142857	18.142857
def _get_or_add_image(self, image_file): """ Return an (rId, description, image_size) 3-tuple identifying the related image part containing image_file and describing the image. """ image_part, rId = self.part.get_or_add_image_part(image_file) desc, image_size = image_pa...	[ "def", "_get_or_add_image", "(", "self", ",", "image_file", ")", ":", "image_part", ",", "rId", "=", "self", ".", "part", ".", "get_or_add_image_part", "(", "image_file", ")", "desc", ",", "image_size", "=", "image_part", ".", "desc", ",", "image_part", ".",...	47.25	15.5
def compute_avg_adj_deg(G): r""" Compute the average adjacency degree for each node. The average adjacency degree is the average of the degrees of a node and its neighbors. Parameters ---------- G: Graph Graph on which the statistic is extracted """ return np.sum(np.dot(G.A...	[ "def", "compute_avg_adj_deg", "(", "G", ")", ":", "return", "np", ".", "sum", "(", "np", ".", "dot", "(", "G", ".", "A", ",", "G", ".", "A", ")", ",", "axis", "=", "1", ")", "/", "(", "np", ".", "sum", "(", "G", ".", "A", ",", "axis", "="...	27.076923	22.076923
def escape_ampersand(string): """ Quick convert unicode ampersand characters not associated with a numbered entity or not starting with allowed characters to a plain & """ if not string: return string start_with_match = r"(\#x(....);\|lt;\|gt;\|amp;)" # The pattern below is match & ...	[ "def", "escape_ampersand", "(", "string", ")", ":", "if", "not", "string", ":", "return", "string", "start_with_match", "=", "r\"(\\#x(....);\|lt;\|gt;\|amp;)\"", "# The pattern below is match & that is not immediately followed by #", "string", "=", "re", ".", "sub", "(", "r...	39.636364	19.272727
def shutdown(self, channel=Channel.CHANNEL_ALL, shutdown_hardware=True): """ Shuts down all CAN interfaces and/or the hardware interface. :param int channel: CAN channel, to be used (:data:`Channel.CHANNEL_CH0`, :data:`Channel.CHANNEL_CH1` or :data:`Channel.CHANNEL_ALL`)...	[ "def", "shutdown", "(", "self", ",", "channel", "=", "Channel", ".", "CHANNEL_ALL", ",", "shutdown_hardware", "=", "True", ")", ":", "# shutdown each channel if it's initialized", "for", "_channel", ",", "is_initialized", "in", "self", ".", "_ch_is_initialized", "."...	49.25	22.75
def oh_my_zsh_auto_title(): """Give warning and offer to fix ``DISABLE_AUTO_TITLE``. see: https://github.com/robbyrussell/oh-my-zsh/pull/257 """ if 'SHELL' in os.environ and 'zsh' in os.environ.get('SHELL'): if os.path.exists(os.path.expanduser('~/.oh-my-zsh')): # oh-my-zsh exists...	[ "def", "oh_my_zsh_auto_title", "(", ")", ":", "if", "'SHELL'", "in", "os", ".", "environ", "and", "'zsh'", "in", "os", ".", "environ", ".", "get", "(", "'SHELL'", ")", ":", "if", "os", ".", "path", ".", "exists", "(", "os", ".", "path", ".", "expan...	37.954545	20.090909
def use_setuptools( version=DEFAULT_VERSION, download_base=DEFAULT_URL, to_dir=DEFAULT_SAVE_DIR, download_delay=15): """ Ensure that a setuptools version is installed. Return None. Raise SystemExit if the requested version or later cannot be installed. """ to_dir = os.path.abspa...	[ "def", "use_setuptools", "(", "version", "=", "DEFAULT_VERSION", ",", "download_base", "=", "DEFAULT_URL", ",", "to_dir", "=", "DEFAULT_SAVE_DIR", ",", "download_delay", "=", "15", ")", ":", "to_dir", "=", "os", ".", "path", ".", "abspath", "(", "to_dir", ")...	33.378378	19.108108
def parse_range_header(self, header, resource_size): """ Parses a range header into a list of two-tuples (start, stop) where `start` is the starting byte of the range (inclusive) and `stop` is the ending byte position of the range (exclusive). Args: header (str): The...	[ "def", "parse_range_header", "(", "self", ",", "header", ",", "resource_size", ")", ":", "if", "not", "header", "or", "'='", "not", "in", "header", ":", "return", "None", "ranges", "=", "[", "]", "units", ",", "range_", "=", "header", ".", "split", "("...	33.897959	19
def change_class(self): """ "on changing the classification label, update the "draw" text """ self.toolbarcenterframe.config(text="Draw: {}".format(self.config.solar_class_name[self.solar_class_var.get()]))	[ "def", "change_class", "(", "self", ")", ":", "self", ".", "toolbarcenterframe", ".", "config", "(", "text", "=", "\"Draw: {}\"", ".", "format", "(", "self", ".", "config", ".", "solar_class_name", "[", "self", ".", "solar_class_var", ".", "get", "(", ")",...	73.333333	32.333333
def SInt(value, width): """ Convert a bitstring `value` of `width` bits to a signed integer representation. :param value: The value to convert. :type value: int or long or BitVec :param int width: The width of the bitstring to consider :return: The converted value :rtype int or long or ...	[ "def", "SInt", "(", "value", ",", "width", ")", ":", "return", "Operators", ".", "ITEBV", "(", "width", ",", "Bit", "(", "value", ",", "width", "-", "1", ")", "==", "1", ",", "GetNBits", "(", "value", ",", "width", ")", "-", "2", "**", "width", ...	35.428571	14
def _get_attribute_dimension(trait_name, mark_type=None): """Returns the dimension for the name of the trait for the specified mark. If `mark_type` is `None`, then the `trait_name` is returned as is. Returns `None` if the `trait_name` is not valid for `mark_type`. """ if(mark_type is None): ...	[ "def", "_get_attribute_dimension", "(", "trait_name", ",", "mark_type", "=", "None", ")", ":", "if", "(", "mark_type", "is", "None", ")", ":", "return", "trait_name", "scale_metadata", "=", "mark_type", ".", "class_traits", "(", ")", "[", "'scales_metadata'", ...	40.916667	19.666667
def update_or_create_all(cls, list_of_kwargs, keys=[]): """Batch method for updating a list of instances and creating them if required Args: list_of_kwargs(list of dicts): A list of dicts where each dict denotes the keyword args that you would pass to...	[ "def", "update_or_create_all", "(", "cls", ",", "list_of_kwargs", ",", "keys", "=", "[", "]", ")", ":", "objs", "=", "[", "]", "for", "kwargs", "in", "list_of_kwargs", ":", "filter_kwargs", "=", "subdict", "(", "kwargs", ",", "keys", ")", "if", "filter_k...	35.75	17.425
def clear_jobs(self, recursive=True): """Clear the self.jobs dictionary that contains information about jobs associated with this `ScatterGather` If recursive is True this will include jobs from all internal `Link` """ if recursive: self._scatter_link.clear_jobs(recu...	[ "def", "clear_jobs", "(", "self", ",", "recursive", "=", "True", ")", ":", "if", "recursive", ":", "self", ".", "_scatter_link", ".", "clear_jobs", "(", "recursive", ")", "self", ".", "jobs", ".", "clear", "(", ")" ]	38.222222	15.555556
def make_dir_structure(base_dir): """Make the build directory structure. """ def maybe_makedir(args): p = join(base_dir, args) if exists(p) and not isdir(p): raise IOError("File '{}' exists but is not a directory ".format(p)) if not exists(p): makedirs(p) ...	[ "def", "make_dir_structure", "(", "base_dir", ")", ":", "def", "maybe_makedir", "(", "", "args", ")", ":", "p", "=", "join", "(", "base_dir", ",", "", "args", ")", "if", "exists", "(", "p", ")", "and", "not", "isdir", "(", "p", ")", ":", "raise",...	24.5625	20.6875
def by_location(self, location, cc=None): """ Perform a Yelp Neighborhood API Search based on a location specifier. Args: location - textual location specifier of form: "address, city, state or zip, optional country" cc - ISO 3166-1 alpha-2 country code. (Optional) ...	[ "def", "by_location", "(", "self", ",", "location", ",", "cc", "=", "None", ")", ":", "header", ",", "content", "=", "self", ".", "_http_request", "(", "self", ".", "BASE_URL", ",", "location", "=", "location", ",", "cc", "=", "cc", ")", "return", "j...	40.181818	26
def write(self, byte): """ Writes a byte buffer to the underlying output file. Raise exception when file is already closed. """ if self.is_closed_flag: raise Exception("Unable to write - already closed!") self.written += len(byte) self.file.write(byte)	[ "def", "write", "(", "self", ",", "byte", ")", ":", "if", "self", ".", "is_closed_flag", ":", "raise", "Exception", "(", "\"Unable to write - already closed!\"", ")", "self", ".", "written", "+=", "len", "(", "byte", ")", "self", ".", "file", ".", "write",...	34.666667	11.111111
def rApply(d, f): """Recursively applies f to the values in dict d. Args: d: The dict to recurse over. f: A function to apply to values in d that takes the value and a list of keys from the root of the dict to the value. """ remainingDicts = [(d, ())] while len(remainingDicts) > 0: curren...	[ "def", "rApply", "(", "d", ",", "f", ")", ":", "remainingDicts", "=", "[", "(", "d", ",", "(", ")", ")", "]", "while", "len", "(", "remainingDicts", ")", ">", "0", ":", "current", ",", "prevKeys", "=", "remainingDicts", ".", "pop", "(", ")", "for...	29.941176	15.117647
def _get_source(self): """ Get the lambda function source template. Strip the leading docstring. Note that it's a real module in this project so we can test it. :return: function source code, with leading docstring stripped. :rtype: str """ logger.debug('Getting ...	[ "def", "_get_source", "(", "self", ")", ":", "logger", ".", "debug", "(", "'Getting module source for webhook2lambda2sqs.lambda_func'", ")", "orig", "=", "getsourcelines", "(", "lambda_func", ")", "src", "=", "''", "in_docstr", "=", "False", "have_docstr", "=", "F...	35.291667	15.958333
def _performAction(self, action): """Perform the specified action.""" try: _a11y.AXUIElement._performAction(self, 'AX%s' % action) except _a11y.ErrorUnsupported as e: sierra_ver = '10.12' if mac_ver()[0] < sierra_ver: raise e else: ...	[ "def", "_performAction", "(", "self", ",", "action", ")", ":", "try", ":", "_a11y", ".", "AXUIElement", ".", "_performAction", "(", "self", ",", "'AX%s'", "%", "action", ")", "except", "_a11y", ".", "ErrorUnsupported", "as", "e", ":", "sierra_ver", "=", ...	33.1	13.4
def _collect_valid_settings(meta, clsdict): """ Return a sequence containing the enumeration values that are valid assignment values. Return-only values are excluded. """ enum_members = clsdict['__members__'] valid_settings = [] for member in enum_members: ...	[ "def", "_collect_valid_settings", "(", "meta", ",", "clsdict", ")", ":", "enum_members", "=", "clsdict", "[", "'__members__'", "]", "valid_settings", "=", "[", "]", "for", "member", "in", "enum_members", ":", "valid_settings", ".", "extend", "(", "member", "."...	41.2	10.6
def _best_version(fields): """Detect the best version depending on the fields used.""" def _has_marker(keys, markers): for marker in markers: if marker in keys: return True return False keys = [] for key, value in fields.items(): if value in ([], 'UNK...	[ "def", "_best_version", "(", "fields", ")", ":", "def", "_has_marker", "(", "keys", ",", "markers", ")", ":", "for", "marker", "in", "markers", ":", "if", "marker", "in", "keys", ":", "return", "True", "return", "False", "keys", "=", "[", "]", "for", ...	42.085714	19.557143
def time_bins(header): ''' Returns the time-axis lower bin edge values for the spectrogram. ''' return np.arange(header['number_of_half_frames'], dtype=np.float64)constants.bins_per_half_frame\ (1.0 - header['over_sampling']) / header['subband_spacing_hz']	[ "def", "time_bins", "(", "header", ")", ":", "return", "np", ".", "arange", "(", "header", "[", "'number_of_half_frames'", "]", ",", "dtype", "=", "np", ".", "float64", ")", "", "constants", ".", "bins_per_half_frame", "", "(", "1.0", "-", "header", "[...	43.833333	33.166667
def construct_datapipeline(env='', generated=None, previous_env=None, region='us-east-1', settings=None, pipeline_data=None): """Create the Pipeline JSON from template. This ha...	[ "def", "construct_datapipeline", "(", "env", "=", "''", ",", "generated", "=", "None", ",", "previous_env", "=", "None", ",", "region", "=", "'us-east-1'", ",", "settings", "=", "None", ",", "pipeline_data", "=", "None", ")", ":", "LOG", ".", "info", "("...	34.28	20.5
def find_package_data( where='.', package='', exclude=standard_exclude, exclude_directories=standard_exclude_directories, only_in_packages=True, show_ignored=False, ): """ Return a dictionary suitable for use in ``package_data`` in a distutils ``setup.py`` file. The dictionary l...	[ "def", "find_package_data", "(", "where", "=", "'.'", ",", "package", "=", "''", ",", "exclude", "=", "standard_exclude", ",", "exclude_directories", "=", "standard_exclude_directories", ",", "only_in_packages", "=", "True", ",", "show_ignored", "=", "False", ",",...	36.890244	16.914634
def set_time_index_from_datetime(self, value, best_fit=True): """ Sets the time_index parameter from a datetime using start/end/interval/units information from the service configuration. If best_fit is True, the method will match the closest time index for the given value, otherwise it w...	[ "def", "set_time_index_from_datetime", "(", "self", ",", "value", ",", "best_fit", "=", "True", ")", ":", "steps", "=", "self", ".", "variable", ".", "time_stops", "if", "value", "in", "steps", ":", "self", ".", "time_index", "=", "steps", ".", "index", ...	46.857143	25.142857
def community_louvain(W, gamma=1, ci=None, B='modularity', seed=None): ''' The optimal community structure is a subdivision of the network into nonoverlapping groups of nodes which maximizes the number of within-group edges and minimizes the number of between-group edges. This function is a fast an...	[ "def", "community_louvain", "(", "W", ",", "gamma", "=", "1", ",", "ci", "=", "None", ",", "B", "=", "'modularity'", ",", "seed", "=", "None", ")", ":", "rng", "=", "get_rng", "(", "seed", ")", "n", "=", "len", "(", "W", ")", "s", "=", "np", ...	33.583815	22.49711
def _process_ed25516(self, data): """Parses ed25516 keys. There is no (apparent) way to validate ed25519 keys. This only checks data length (256 bits), but does not try to validate the key in any way.""" current_position, verifying_key = self._unpack_by_int(data, 0) ver...	[ "def", "_process_ed25516", "(", "self", ",", "data", ")", ":", "current_position", ",", "verifying_key", "=", "self", ".", "_unpack_by_int", "(", "data", ",", "0", ")", "verifying_key_length", "=", "len", "(", "verifying_key", ")", "*", "8", "verifying_key", ...	39.166667	22.333333

def multifile_dataframe(paths=['urbanslang{}of4.csv'.format(i) for i in range(1, 5)], header=0, index_col=None): """Like pandas.read_csv, but loads and concatenates (df.append(df)s) DataFrames together""" df = pd.DataFrame() for p in paths: df = df.append(read_csv(p, header=header, index_col=index_c...

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def read_fwf(self, *args, **kwargs): """Fetch the target and pass through to pandas.read_fwf. Don't provide the first argument of read_fwf(); it is supplied internally. """ import pandas t = self.resolved_url.get_resource().get_target() return pandas.read_fwf(t.fspath, *args, ...

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def make_char_data_file(do_it_anyway=False): """ Build the compressed data file 'char_classes.dat' and write it to the current directory. If you run this, run it in Python 3.7.0 or later. It will run in earlier versions, but you won't get the Unicode 11 standard, leading to inconsistent behavio...

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def attr_func(*attrs, **kwargs): """Creates an "attribute function" for given attribute name(s). Resulting function will retrieve attributes with given names, in order, from the object that has been passed to it. For example, ``attr_func('a', 'b')(foo)`` yields the same as ``foo.a.b`` :param attrs...

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36.102041

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def cleanup_html(html): """ This 'cleans' the HTML, meaning that any page structure is removed (only the contents of <body> are used, if there is any <body). Also <ins> and <del> tags are removed. """ match = _body_re.search(html) if match: html = html[match.end():] match = _end_body_re...

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def pypi_module_version_is_available(module, version): "Check whether module==version is available on pypi" # returns True/False (or None if failed to execute the check) # using a hack that when passing "module==" w/ no version number to pip # it "fails" and returns all the available versions in stderr...

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def z_axis_rotation(theta): """Generates a 3x3 rotation matrix for a rotation of angle theta about the z axis. Parameters ---------- theta : float amount to rotate, in radians Returns ------- :obj:`numpy.ndarray` of float A random...

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def trim(self, name): """When the name is too long, use the LHS or a random string instead.""" if len(name) > self.MAX_LENGTH and self.target: name = self.TEMP_VAR.format(self._name(self.target)) if len(name) > self.MAX_LENGTH: while True: name = '_{:04x}'.format(random.randint(0, 16 ** ...

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38.5

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def read_docs(self, payloadType, els_client = None): """Fetches the list of documents associated with this entity from api.elsevier.com. If need be, splits the requests in batches to retrieve them all. Returns True if successful; else, False. NOTE: this method requires elevated API pe...

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def get_build_info(api_instance, build_id=None, keys=DEFAULT_BUILD_KEYS, wait=False): """ print build info about a job """ build = (api_instance.get_build(build_id) if build_id else api_instance.get_last_build()) output = "" if wait: build.block_until_complete() ...

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def RandomNormalInitializer(stddev=1e-2): """An initializer function for random normal coefficients.""" def init(shape, rng): return (stddev * backend.random.normal(rng, shape)).astype('float32') return init

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def auto_connect(handler, timeout=5, not_found=None, event_loop=None): """Short method for connecting to a device. This is a convenience method that create an event loop, auto discovers devices, picks the first device found, connects to it and passes it to a user provided handler. An optional error han...

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def sort_args(args): """Put flags at the end""" args = args.copy() flags = [i for i in args if FLAGS_RE.match(i[1])] for i in flags: args.remove(i) return args + flags

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def save_intraday(data: pd.DataFrame, ticker: str, dt, typ='TRADE'): """ Check whether data is done for the day and save Args: data: data ticker: ticker dt: date typ: [TRADE, BID, ASK, BID_BEST, ASK_BEST, BEST_BID, BEST_ASK] Examples: >>> os.environ['BBG_ROOT'] ...

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def fit(self, X, y, cost_mat, sample_weight=None): """Build a Bagging ensemble of estimators from the training set (X, y). Parameters ---------- X : {array-like, sparse matrix} of shape = [n_samples, n_features] The training input samples. Sparse matrices are accepted only i...

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37.23913

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def ip_addrs6(interface=None, include_loopback=False, cidr=None): ''' Returns a list of IPv6 addresses assigned to the host. interface Only IP addresses from that interface will be returned. include_loopback : False Include loopback ::1 IPv6 address. cidr Describes subnet ...

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def run(self): """ Perform the actual QChem run. Returns: (subprocess.Popen) Used for monitoring. """ qclog = open(self.qclog_file, 'w') p = subprocess.Popen(self.current_command, stdout=qclog) return p

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def get_by_number(self, number: int) -> Optional[DataObjectReplica]: """ Gets the data object replica in this collection with the given number. Will return `None` if such replica does not exist. :param number: the number of the data object replica to get :return: the data object ...

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52.125

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def ph_basename(self, ph_type): """ Return the base name for a placeholder of *ph_type* in this shape collection. There is some variance between slide types, for example a notes slide uses a different name for the body placeholder, so this method can be overriden by subclasses. ...

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def extract_traits(self, entity): """ Extract data required to classify entity. :param object entity: :return: namedtuple consisting of characteristic traits and match flag :rtype: matchbox.box.Trait """ traits = getattr(entity, self._characteristic) if t...

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def set(self, *args, **kwargs): ''' d.set(...) yields a copy of the IMap object d; the ... may be replaced with either nothing (in which case d is returned) or a list of 0 or more dictionaries followed by a lsit of zero or more keyword arguments. These dictionaries and keywords arguments...

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def _bisect_kmeans(X, n_clusters, n_trials, max_iter, tol): """ Apply Bisecting Kmeans clustering to reach n_clusters number of clusters """ membs = np.empty(shape=X.shape[0], dtype=int) centers = dict() #np.empty(shape=(n_clusters,X.shape[1]), dtype=float) sse_arr = dict() #-1.0*np.ones(sha...

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def encrypt_file(file, keys=secretKeys()): '''Encrypt file data with the same method as the Send browser/js client''' key = keys.encryptKey iv = keys.encryptIV encData = tempfile.SpooledTemporaryFile(max_size=SPOOL_SIZE, mode='w+b') cipher = Cryptodome.Cipher.AES.new(key, Cryptodome.Cipher.AES.MODE_...

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def convert_to_array(pmap, nsites, imtls, inner_idx=0): """ Convert the probability map into a composite array with header of the form PGA-0.1, PGA-0.2 ... :param pmap: probability map :param nsites: total number of sites :param imtls: a DictArray with IMT and levels :returns: a composite a...

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34.75

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def create_request_url(self, interface, method, version, parameters): """Create the URL to submit to the Steam Web API interface: Steam Web API interface containing methods. method: The method to call. version: The version of the method. paramters: Parameters to supply to the me...

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def codestr2rst(codestr, lang='python'): """Return reStructuredText code block from code string""" code_directive = "\n.. code-block:: {0}\n\n".format(lang) indented_block = indent(codestr, ' ' * 4) return code_directive + indented_block

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49.8

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def get_env_path(cls): """Returns PATH environment variable updated to run uwsgiconf in (e.g. for virtualenv). :rtype: str|unicode """ return os.path.dirname(Finder.python()) + os.pathsep + os.environ['PATH']

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def _update_assessment_parts_map(self, part_list): """Updates the part map. Called before question list gets updated if it is determined that the sections assessmentPart map is out of date with the current part list. """ for part in part_list: # perhaps look for a "...

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45.5

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def _set_zfcp_multipath(self): """sles""" # modprobe DM multipath kernel module modprobe = 'modprobe dm_multipath' conf_file = '#blacklist {\n' conf_file += '#\tdevnode \\"*\\"\n' conf_file += '#}\n' conf_cmd = 'echo -e "%s" > /etc/multipath.conf' % conf_file ...

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38

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def split(cls, entry): """Split a declaration name into a (declaration, subpath) tuple. Examples: >>> DeclarationSet.split('foo__bar') ('foo', 'bar') >>> DeclarationSet.split('foo') ('foo', None) >>> DeclarationSet.split('foo__bar__baz') ('foo', 'bar__baz...

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def _run_xmlsec(self, com_list, extra_args): """ Common code to invoke xmlsec and parse the output. :param com_list: Key-value parameter list for xmlsec :param extra_args: Positional parameters to be appended after all key-value parameters :result: Whatever xmlsec wro...

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def visit_module(self, node): """ A interface will be called when visiting a module. @param node: node of current module """ if not node.file_stream: # Failed to open the module return isFirstLineOfComment = True isDocString = False ...

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def jobSetFields(self, jobID, fields, useConnectionID=True, ignoreUnchanged=False): """ Change the values of 1 or more fields in a job. Here, 'fields' is a dict with the name/value pairs to change. The names are the public names of the fields (camelBack, not the lower_case_only form as st...

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38.843137

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def get_gfe(self, annotation, locus): """ creates GFE from a sequence annotation :param locus: The gene locus :type locus: ``str`` :param annotation: An sequence annotation object :type annotation: ``List`` :rtype: ``List`` Returns: The GFE ...

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44.792857

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def findCaller(self): """ Find the stack frame of the caller so that we can note the source file name, line number and function name. """ f = currentframe() #On some versions of IronPython, currentframe() returns None if #IronPython isn't run with -X:Frames. ...

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35.5

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def register_hit_type( self, title, description, reward, duration_hours, keywords, qualifications ): """Register HIT Type for this HIT and return the type's ID, which is required for creating a HIT. """ reward = str(reward) duration_secs = int(datetime.timedelta(hours...

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def load(self, ds, verbose=False): """ Load a CLDF dataset into the database. :param dataset: :return: """ try: self.fetchone('select ID from dataset') except sqlite3.OperationalError: self.create(force=True) self.unload(ds) ...

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def initialize(self, argv=None): """initialize the app""" super(BaseParallelApplication, self).initialize(argv) self.to_work_dir() self.reinit_logging()

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36

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def recent_update_frequencies(self): """ Returns the 10 most recent update frequencies. The given frequencies are computed as short-term frequencies! The 0th element of the list corresponds to the most recent frequency. """ return list(reversed([(1.0 / p) for p in numpy.diff(sel...

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def process_document(self, doc): """ Add your code for processing the document """ descriptions = doc.select_segments("projects[*].description") projects = doc.select_segments("projects[*]") for d, p in zip(descriptions, projects): # First phase of extracti...

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def invert(self): """ Invert the price (e.g. go from ``USD/BTS`` into ``BTS/USD``) """ tmp = self["quote"] self["quote"] = self["base"] self["base"] = tmp if "for_sale" in self and self["for_sale"]: self["for_sale"] = self.amount_class( self["f...

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36.636364

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def predict(self,param_dict): """ predict new waveforms using multivar fit """ encoder_dict = self._designmatrix_object.encoder X, col_names = self._designmatrix_object.run_encoder(param_dict, encoder_dict) # compute predictions Y_pred = self._compute_prediction(X) return...

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45.857143

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def element_screen_center(self, element): """ :returns: The center point of the element. :rtype: class:`dict` with the field "left" set to the X coordinate and the field "top" set to the Y coordinate. """ pos = self.element_screen_position(element...

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34.461538

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def malloc(func): """ Decorator Execute tracemalloc """ def _f(*args, **kwargs): print("\n<<<---") tracemalloc.start() res = func(*args, **kwargs) snapshot = tracemalloc.take_snapshot() top_stats = snapshot.statistics('lineno') print("[ Top 10 ]") ...

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def create_user(self, claims): """ Create the user if it doesn't exist yet Args: claims (dict): claims from the access token Returns: django.contrib.auth.models.User: A Django user """ # Create the user username_claim = settings.USERNAME_...

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def InverseGamma(alpha: vertex_constructor_param_types, beta: vertex_constructor_param_types, label: Optional[str]=None) -> Vertex: """ One to one constructor for mapping some shape of alpha and beta to alpha matching shaped Inverse Gamma. :param alpha: the alpha of the Inverse Gamma with either th...

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def invoke(self, args, initial_invocation_data=None, out_file=None): """ Invoke a command. :param args: The arguments that represent the command :type args: list, tuple :param initial_invocation_data: Prime the in memory collection of key-value data for this invocation. :type in...

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47.076923

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def main(): """main program body""" if len( sys.argv ) != 2: print __doc__ % sys.argv[0] sys.exit( 1 ) file = open( sys.argv[1], "w\n" ) write = file.write count_sid = len( sid_standard_names ) # `mac_extras' contains the list of glyph names in the Macintosh standard # encoding which are not ...

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26.239669

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def fmod(x, y, context=None): """ Return ``x`` reduced modulo ``y``. Returns the value of x - n * y, where n is the integer quotient of x divided by y, rounded toward zero. Special values are handled as described in Section F.9.7.1 of the ISO C99 standard: If x is infinite or y is zero, the re...

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30.636364

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def alignment_chart(data): """Make the HighCharts HTML to plot the alignment rates """ keys = OrderedDict() keys['reads_mapped'] = {'color': '#437bb1', 'name': 'Mapped'} keys['reads_unmapped'] = {'color': '#b1084c', 'name': 'Unmapped'} # Config for the plot plot_conf = { 'id': 'samtools...

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36.357143

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def get_content_string(self): """ Ge thet Clusterpoint response's content as a string. """ return ''.join([ET.tostring(element, encoding="utf-8", method="xml") for element in list(self._content)])

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58.25

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def keys(self): """ :returns: a list of usable keys :rtype: list """ keys = list() for attribute_name, type_instance in inspect.getmembers(self): # ignore parameters with __ and if they are methods if attribute_name.startswith('__') or inspect....

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21.789474

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def index_list(self): ''' List all cube indexes :param collection: cube name :param owner: username of cube owner ''' logger.info('Listing indexes') _ix = {} _i = self.inspector for tbl in _i.get_table_names(): _ix.setdefault(tbl, []) ...

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26.866667

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def add_filepath(self, filepath, fullpath, copy=False): """ Bespoke function to add filepath & fullpath to manifest object without hashing. Can defer hashing until all files are added. Hashing all at once is much faster as overhead for threading is spread over all files "...

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33.5

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def _packto(self, stream): ''' Pack current struct into stream. For parser internal use. :param stream: a buffered stream (File or BytesIO) :return: packed bytes length ''' #self._logger.log(logging.DEBUG, 'packing %r', self) total_size = 0 ...

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33.789474

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def _einsum_helper(input_shapes, output_shape, mesh_impl): """Returns slicewise function and reduced mesh dimensions. Assumes the output shape contains no new dimensions. Args: input_shapes: a list of Shapes output_shape: a Shape mesh_impl: a MeshImpl Returns: einsum_slice_fn: a function from ...

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40.65

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def store_nulldata(self, hexdata, wifs, change_address=None, txouts=None, fee=10000, lock_time=0): """Store <hexdata> in blockchain and return new txid. Utxos taken from <wifs> and change sent to <change_address>. <wifs>: '["privatekey_in_wif_format", ...]' """ ...

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52.272727

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def _set_axis_ticks(self, axis, ticks, log=False, rotation=0): """ Allows setting the ticks for a particular axis either with a tuple of ticks, a tick locator object, an integer number of ticks, a list of tuples containing positions and labels or a list of positions. Also support...

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43.90625

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def median(timeseries, segmentlength, **kwargs): """Calculate a PSD using Welch's method with a median average """ if scipy_version <= '1.1.9999': raise ValueError( "median average PSD estimation requires scipy >= 1.2.0", ) kwargs.setdefault('average', 'median') return we...

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39.111111

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def parse(self, stream): """Parses the keys + values from a config file.""" items = OrderedDict() for i, line in enumerate(stream): line = line.strip() if not line or line[0] in ["#", ";", "["] or line.startswith("---"): continue white_space =...

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38.470588

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def list_nodes_full(conn=None, call=None): ''' Return a list of the VMs that are on the provider, with all fields ''' if call == 'action': raise SaltCloudSystemExit( 'The list_nodes_full function must be called with -f or --function.' ) if not conn: conn = get_co...

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30.434783

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def logsumexp(arr,axis=0): """Faster logsumexp?""" minarr= numpy.amax(arr,axis=axis) if axis == 1: minarr= numpy.reshape(minarr,(arr.shape[0],1)) if axis == 0: minminarr= numpy.tile(minarr,(arr.shape[0],1)) elif axis == 1: minminarr= numpy.tile(minarr,(1,arr.shape[1])) el...

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38.375

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def calculate_gamma_matrix(magnetic_states, Omega=1, einsteinA=None, numeric=True): ur"""Calculate the matrix of decay between states. This function calculates the matrix :math:`\gamma_{ij}` of decay rates between states :math:`|i\rangle` and :math:`|j\rangle` (in the units s...

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31.488688

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def signif(self, digits=6): """ Round doubles/floats to the given number of significant digits. :param int digits: Number of significant digits to retain. :returns: new H2OFrame with rounded values from the original frame. """ return H2OFrame._expr(expr=ExprNode("signif"...

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44

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def _get_mount_methods(self, disk_type): """Finds which mount methods are suitable for the specified disk type. Returns a list of all suitable mount methods. """ if self.disk_mounter == 'auto': methods = [] def add_method_if_exists(method): if (me...

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def to_dict(self): """Transform the date-range to a dict.""" d = {} d['start'] = date_to_str(self.start) d['end'] = date_to_str(self.end) return d

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31

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def pack_apply_message(f, args, kwargs, buffer_threshold=MAX_BYTES, item_threshold=MAX_ITEMS): """Pack up a function, args, and kwargs to be sent over the wire. Each element of args/kwargs will be canned for special treatment, but inspection will not go any deeper than that. Any object whose data is l...

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37.266667

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def coloured_network(network, setup, filename): """ Plots a coloured (hyper-)graph to a dot file Parameters ---------- network : object An object implementing a method `__plot__` which must return the `networkx.MultiDiGraph`_ instance to be coloured. Typically, it will be an instanc...

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40.848485

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def get_keyvault(access_token, subscription_id, rgname, vault_name): '''Gets details about the named key vault. Args: access_token (str): A valid Azure authentication token. subscription_id (str): Azure subscription id. rgname (str): Azure resource group name. vault_name (str): ...

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def calc_signal_sum(self, measure='LFP'): """ Superimpose each cell's contribution to the compound population signal, i.e., the population CSD or LFP Parameters ---------- measure : str {'LFP', 'CSD'}: Either 'LFP' or 'CSD'. Returns -------...

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def _check_path(self, src, path_type, dest=None, force=False): """Check a new destination path in the archive. Since it is possible for multiple plugins to collect the same paths, and since plugins can now run concurrently, it is possible for two threads to race in archive m...

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def expand(sconf, cwd=None, parent=None): """Return config with shorthand and inline properties expanded. This is necessary to keep the code in the :class:`WorkspaceBuilder` clean and also allow for neat, short-hand configurations. As a simple example, internally, tmuxp expects that config options ...

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def update_variogram_model(self, variogram_model, variogram_parameters=None, variogram_function=None, nlags=6, weight=False, anisotropy_scaling_y=1., anisotropy_scaling_z=1., anisotropy_angle_x=0., anisotropy_angle_y=0., ...

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def configure_logging(verbosity): '''configure logging via verbosity level of between 0 and 2 corresponding to log levels warning, info and debug respectfully.''' log_level = max(logging.DEBUG, logging.WARNING - logging.DEBUG*verbosity) logging.basicConfig( stream=sys.stderr, level=log_level, ...

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def _get_or_add_image(self, image_file): """ Return an (rId, description, image_size) 3-tuple identifying the related image part containing *image_file* and describing the image. """ image_part, rId = self.part.get_or_add_image_part(image_file) desc, image_size = image_pa...

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def compute_avg_adj_deg(G): r""" Compute the average adjacency degree for each node. The average adjacency degree is the average of the degrees of a node and its neighbors. Parameters ---------- G: Graph Graph on which the statistic is extracted """ return np.sum(np.dot(G.A...

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def escape_ampersand(string): """ Quick convert unicode ampersand characters not associated with a numbered entity or not starting with allowed characters to a plain & """ if not string: return string start_with_match = r"(\#x(....);|lt;|gt;|amp;)" # The pattern below is match & ...

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def shutdown(self, channel=Channel.CHANNEL_ALL, shutdown_hardware=True): """ Shuts down all CAN interfaces and/or the hardware interface. :param int channel: CAN channel, to be used (:data:`Channel.CHANNEL_CH0`, :data:`Channel.CHANNEL_CH1` or :data:`Channel.CHANNEL_ALL`)...

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def oh_my_zsh_auto_title(): """Give warning and offer to fix ``DISABLE_AUTO_TITLE``. see: https://github.com/robbyrussell/oh-my-zsh/pull/257 """ if 'SHELL' in os.environ and 'zsh' in os.environ.get('SHELL'): if os.path.exists(os.path.expanduser('~/.oh-my-zsh')): # oh-my-zsh exists...

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def use_setuptools( version=DEFAULT_VERSION, download_base=DEFAULT_URL, to_dir=DEFAULT_SAVE_DIR, download_delay=15): """ Ensure that a setuptools version is installed. Return None. Raise SystemExit if the requested version or later cannot be installed. """ to_dir = os.path.abspa...

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def parse_range_header(self, header, resource_size): """ Parses a range header into a list of two-tuples (start, stop) where `start` is the starting byte of the range (inclusive) and `stop` is the ending byte position of the range (exclusive). Args: header (str): The...

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def change_class(self): """ "on changing the classification label, update the "draw" text """ self.toolbarcenterframe.config(text="Draw: {}".format(self.config.solar_class_name[self.solar_class_var.get()]))

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def SInt(value, width): """ Convert a bitstring `value` of `width` bits to a signed integer representation. :param value: The value to convert. :type value: int or long or BitVec :param int width: The width of the bitstring to consider :return: The converted value :rtype int or long or ...

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def _get_attribute_dimension(trait_name, mark_type=None): """Returns the dimension for the name of the trait for the specified mark. If `mark_type` is `None`, then the `trait_name` is returned as is. Returns `None` if the `trait_name` is not valid for `mark_type`. """ if(mark_type is None): ...

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def update_or_create_all(cls, list_of_kwargs, keys=[]): """Batch method for updating a list of instances and creating them if required Args: list_of_kwargs(list of dicts): A list of dicts where each dict denotes the keyword args that you would pass to...

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def clear_jobs(self, recursive=True): """Clear the self.jobs dictionary that contains information about jobs associated with this `ScatterGather` If recursive is True this will include jobs from all internal `Link` """ if recursive: self._scatter_link.clear_jobs(recu...

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def make_dir_structure(base_dir): """Make the build directory structure. """ def maybe_makedir(*args): p = join(base_dir, *args) if exists(p) and not isdir(p): raise IOError("File '{}' exists but is not a directory ".format(p)) if not exists(p): makedirs(p) ...

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def by_location(self, location, cc=None): """ Perform a Yelp Neighborhood API Search based on a location specifier. Args: location - textual location specifier of form: "address, city, state or zip, optional country" cc - ISO 3166-1 alpha-2 country code. (Optional) ...

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def write(self, byte): """ Writes a byte buffer to the underlying output file. Raise exception when file is already closed. """ if self.is_closed_flag: raise Exception("Unable to write - already closed!") self.written += len(byte) self.file.write(byte)

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def rApply(d, f): """Recursively applies f to the values in dict d. Args: d: The dict to recurse over. f: A function to apply to values in d that takes the value and a list of keys from the root of the dict to the value. """ remainingDicts = [(d, ())] while len(remainingDicts) > 0: curren...

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def _get_source(self): """ Get the lambda function source template. Strip the leading docstring. Note that it's a real module in this project so we can test it. :return: function source code, with leading docstring stripped. :rtype: str """ logger.debug('Getting ...

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def _performAction(self, action): """Perform the specified action.""" try: _a11y.AXUIElement._performAction(self, 'AX%s' % action) except _a11y.ErrorUnsupported as e: sierra_ver = '10.12' if mac_ver()[0] < sierra_ver: raise e else: ...

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def _collect_valid_settings(meta, clsdict): """ Return a sequence containing the enumeration values that are valid assignment values. Return-only values are excluded. """ enum_members = clsdict['__members__'] valid_settings = [] for member in enum_members: ...

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def _best_version(fields): """Detect the best version depending on the fields used.""" def _has_marker(keys, markers): for marker in markers: if marker in keys: return True return False keys = [] for key, value in fields.items(): if value in ([], 'UNK...

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def time_bins(header): ''' Returns the time-axis lower bin edge values for the spectrogram. ''' return np.arange(header['number_of_half_frames'], dtype=np.float64)*constants.bins_per_half_frame\ *(1.0 - header['over_sampling']) / header['subband_spacing_hz']

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def construct_datapipeline(env='', generated=None, previous_env=None, region='us-east-1', settings=None, pipeline_data=None): """Create the Pipeline JSON from template. This ha...

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def find_package_data( where='.', package='', exclude=standard_exclude, exclude_directories=standard_exclude_directories, only_in_packages=True, show_ignored=False, ): """ Return a dictionary suitable for use in ``package_data`` in a distutils ``setup.py`` file. The dictionary l...

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def set_time_index_from_datetime(self, value, best_fit=True): """ Sets the time_index parameter from a datetime using start/end/interval/units information from the service configuration. If best_fit is True, the method will match the closest time index for the given value, otherwise it w...

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def community_louvain(W, gamma=1, ci=None, B='modularity', seed=None): ''' The optimal community structure is a subdivision of the network into nonoverlapping groups of nodes which maximizes the number of within-group edges and minimizes the number of between-group edges. This function is a fast an...

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def _process_ed25516(self, data): """Parses ed25516 keys. There is no (apparent) way to validate ed25519 keys. This only checks data length (256 bits), but does not try to validate the key in any way.""" current_position, verifying_key = self._unpack_by_int(data, 0) ver...

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