kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def make_elements(tokens, text, start=0, end=None, fallback=None): """Make elements from a list of parsed tokens. It will turn all unmatched holes into fallback elements. :param tokens: a list of parsed tokens. :param text: the original tet. :param start: the offset of where parsing starts. Default...	[ "def", "make_elements", "(", "tokens", ",", "text", ",", "start", "=", "0", ",", "end", "=", "None", ",", "fallback", "=", "None", ")", ":", "result", "=", "[", "]", "end", "=", "end", "or", "len", "(", "text", ")", "prev_end", "=", "start", "for...	38.409091	15.818182
def create_qcos_client(self, app_uri): """创建资源管理客户端 """ if (self.auth is None): return QcosClient(None) products = self.get_app_region_products(app_uri) auth = self.get_valid_app_auth(app_uri) if products is None or auth is None: return None ...	[ "def", "create_qcos_client", "(", "self", ",", "app_uri", ")", ":", "if", "(", "self", ".", "auth", "is", "None", ")", ":", "return", "QcosClient", "(", "None", ")", "products", "=", "self", ".", "get_app_region_products", "(", "app_uri", ")", "auth", "=...	23.8	18.133333
def decrypt(args, *kwargs): """ Decrypts legacy or spec-compliant JOSE token. First attempts to decrypt the token in a legacy mode (https://tools.ietf.org/html/draft-ietf-oauth-json-web-token-19). If it is not a valid legacy token then attempts to decrypt it in a spec-compliant way (http://tools.i...	[ "def", "decrypt", "(", "", "args", ",", "", "", "kwargs", ")", ":", "try", ":", "return", "legacy_decrypt", "(", "", "args", ",", "", "", "kwargs", ")", "except", "(", "NotYetValid", ",", "Expired", ")", "as", "e", ":", "# these should be raised ...	44.875	15.25
def _apply(self, element, key=None): """ Applies the operation to the element, executing any pre- and post-processor hooks if defined. """ kwargs = {} for hook in self._preprocess_hooks: kwargs.update(hook(self, element)) ret = self._process(element, k...	[ "def", "_apply", "(", "self", ",", "element", ",", "key", "=", "None", ")", ":", "kwargs", "=", "{", "}", "for", "hook", "in", "self", ".", "_preprocess_hooks", ":", "kwargs", ".", "update", "(", "hook", "(", "self", ",", "element", ")", ")", "ret"...	35	7.666667
def reload(self): """ Refreshes the resource with the data from the server. """ try: if hasattr(self, 'href'): data = self._api.get(self.href, append_base=False).json() resource = self.__class__(api=self._api, **data) elif hasattr(s...	[ "def", "reload", "(", "self", ")", ":", "try", ":", "if", "hasattr", "(", "self", ",", "'href'", ")", ":", "data", "=", "self", ".", "_api", ".", "get", "(", "self", ".", "href", ",", "append_base", "=", "False", ")", ".", "json", "(", ")", "re...	39.925926	20.222222
def load_werkzeug(path): """Load werkzeug.""" sys.path[0] = path # get rid of already imported stuff wz.__dict__.clear() for key in sys.modules.keys(): if key.startswith("werkzeug.") or key == "werkzeug": sys.modules.pop(key, None) # import werkzeug again. import werkze...	[ "def", "load_werkzeug", "(", "path", ")", ":", "sys", ".", "path", "[", "0", "]", "=", "path", "# get rid of already imported stuff", "wz", ".", "__dict__", ".", "clear", "(", ")", "for", "key", "in", "sys", ".", "modules", ".", "keys", "(", ")", ":", ...	25.852941	19.147059
def resolve(self, authorization: http.Header): """ Determine the user associated with a request, using HTTP Basic Authentication. """ if authorization is None: return None scheme, token = authorization.split() if scheme.lower() != 'basic': return ...	[ "def", "resolve", "(", "self", ",", "authorization", ":", "http", ".", "Header", ")", ":", "if", "authorization", "is", "None", ":", "return", "None", "scheme", ",", "token", "=", "authorization", ".", "split", "(", ")", "if", "scheme", ".", "lower", "...	31.866667	20.4
def neighbors( adata: AnnData, n_neighbors: int = 15, n_pcs: Optional[int] = None, use_rep: Optional[str] = None, knn: bool = True, random_state: Optional[Union[int, RandomState]] = 0, method: str = 'umap', metric: Union[str, Callable[[np.ndarray, np.ndarray], float]] = 'euclidean', ...	[ "def", "neighbors", "(", "adata", ":", "AnnData", ",", "n_neighbors", ":", "int", "=", "15", ",", "n_pcs", ":", "Optional", "[", "int", "]", "=", "None", ",", "use_rep", ":", "Optional", "[", "str", "]", "=", "None", ",", "knn", ":", "bool", "=", ...	43.824176	23.593407
def minimum_geometries(self, n=None, symmetry_measure_type=None, max_csm=None): """ Returns a list of geometries with increasing continuous symmetry measure in this ChemicalEnvironments object :param n: Number of geometries to be included in the list :return: list of geometries with incr...	[ "def", "minimum_geometries", "(", "self", ",", "n", "=", "None", ",", "symmetry_measure_type", "=", "None", ",", "max_csm", "=", "None", ")", ":", "cglist", "=", "[", "cg", "for", "cg", "in", "self", ".", "coord_geoms", "]", "if", "symmetry_measure_type", ...	57.208333	31.708333
def factorize(cls, pq): """ Factorizes the given large integer. :param pq: the prime pair pq. :return: a tuple containing the two factors p and q. """ if pq % 2 == 0: return 2, pq // 2 y, c, m = randint(1, pq - 1), randint(1, pq - 1), randint(1, pq -...	[ "def", "factorize", "(", "cls", ",", "pq", ")", ":", "if", "pq", "%", "2", "==", "0", ":", "return", "2", ",", "pq", "//", "2", "y", ",", "c", ",", "m", "=", "randint", "(", "1", ",", "pq", "-", "1", ")", ",", "randint", "(", "1", ",", ...	25	18.25
def create(self, module_name, class_name, args=None, kwargs=None, factory_method=None, factory_args=None, factory_kwargs=None, static=False, calls=None): """ Initializes an instance of the service """ if args is None: args = [] if kwargs i...	[ "def", "create", "(", "self", ",", "module_name", ",", "class_name", ",", "args", "=", "None", ",", "kwargs", "=", "None", ",", "factory_method", "=", "None", ",", "factory_args", "=", "None", ",", "factory_kwargs", "=", "None", ",", "static", "=", "Fals...	35	18.891892
def upgrade(self, instance_id, cpus=None, memory=None, nic_speed=None, public=True, preset=None): """Upgrades a VS instance. Example:: # Upgrade instance 12345 to 4 CPUs and 4 GB of memory import SoftLayer client = SoftLayer.create_client_from_env() mgr = So...	[ "def", "upgrade", "(", "self", ",", "instance_id", ",", "cpus", "=", "None", ",", "memory", "=", "None", ",", "nic_speed", "=", "None", ",", "public", "=", "True", ",", "preset", "=", "None", ")", ":", "upgrade_prices", "=", "self", ".", "_get_upgrade_...	40.19403	23.970149
def get_server_session(self): """Start or resume a server session, or raise ConfigurationError.""" with self._lock: session_timeout = self._description.logical_session_timeout_minutes if session_timeout is None: # Maybe we need an initial scan? Can raise ServerSel...	[ "def", "get_server_session", "(", "self", ")", ":", "with", "self", ".", "_lock", ":", "session_timeout", "=", "self", ".", "_description", ".", "logical_session_timeout_minutes", "if", "session_timeout", "is", "None", ":", "# Maybe we need an initial scan? Can raise Se...	50.833333	19.916667
def _os_install(self, package_file): """ take in a dict return a string of docker build RUN directives one RUN per package type one package type per JSON key """ packages = " ".join(json.load(package_file.open())) if packages: for packager in self.pkg_...	[ "def", "_os_install", "(", "self", ",", "package_file", ")", ":", "packages", "=", "\" \"", ".", "join", "(", "json", ".", "load", "(", "package_file", ".", "open", "(", ")", ")", ")", "if", "packages", ":", "for", "packager", "in", "self", ".", "pkg...	37.928571	13.642857
def reorient(self, up, look): ''' Reorient the mesh by specifying two vectors. up: The foot-to-head direction. look: The direction the body is facing. In the result, the up will end up along +y, and look along +z (i.e. facing towards a default OpenGL camera). '...	[ "def", "reorient", "(", "self", ",", "up", ",", "look", ")", ":", "from", "blmath", ".", "geometry", ".", "transform", "import", "rotation_from_up_and_look", "from", "blmath", ".", "numerics", "import", "as_numeric_array", "up", "=", "as_numeric_array", "(", "...	32.789474	22.368421
def prompt_stdin(prompt): """Ask user for agreeing to data set licenses.""" # raw_input returns the empty string for "enter" yes = set(['yes', 'y']) no = set(['no','n']) try: print(prompt) if sys.version_info>=(3,0): choice = input().lower() else: cho...	[ "def", "prompt_stdin", "(", "prompt", ")", ":", "# raw_input returns the empty string for \"enter\"", "yes", "=", "set", "(", "[", "'yes'", ",", "'y'", "]", ")", "no", "=", "set", "(", "[", "'no'", ",", "'n'", "]", ")", "try", ":", "print", "(", "prompt"...	29.071429	18.892857
def ParseGshadowEntry(self, line): """Extract the members of each group from /etc/gshadow. Identifies the groups in /etc/gshadow and several attributes of the group, including how the password is crypted (if set). gshadow files have the format group_name:passwd:admins:members admins are both group...	[ "def", "ParseGshadowEntry", "(", "self", ",", "line", ")", ":", "fields", "=", "(", "\"name\"", ",", "\"passwd\"", ",", "\"administrators\"", ",", "\"members\"", ")", "if", "line", ":", "rslt", "=", "dict", "(", "zip", "(", "fields", ",", "line", ".", ...	39.84	18.88
def execute(self, conn, name='', transaction = False): """ returns id for a given physics group name """ binds={} if name: op = ('=', 'like')['%' in name] sql = self.sql + " WHERE pg.physics_group_name %s :physicsgroup" % (op) binds = {"physic...	[ "def", "execute", "(", "self", ",", "conn", ",", "name", "=", "''", ",", "transaction", "=", "False", ")", ":", "binds", "=", "{", "}", "if", "name", ":", "op", "=", "(", "'='", ",", "'like'", ")", "[", "'%'", "in", "name", "]", "sql", "=", "...	34.529412	13.823529
def documentation_404(self, base_url=None): """Returns a smart 404 page that contains documentation for the written API""" base_url = self.base_url if base_url is None else base_url def handle_404(request, response, args, *kwargs): url_prefix = request.forwarded_uri[:-1] ...	[ "def", "documentation_404", "(", "self", ",", "base_url", "=", "None", ")", ":", "base_url", "=", "self", ".", "base_url", "if", "base_url", "is", "None", "else", "base_url", "def", "handle_404", "(", "request", ",", "response", ",", "", "args", ",", "...	52.076923	29.230769
def get_path(self, path=''): """ Validate incoming path, if path is empty, build it from resource attributes, If path is invalid - raise exception :param path: path to remote file storage :return: valid path or :raise Exception: """ if not path: host...	[ "def", "get_path", "(", "self", ",", "path", "=", "''", ")", ":", "if", "not", "path", ":", "host", "=", "self", ".", "resource_config", ".", "backup_location", "if", "':'", "not", "in", "host", ":", "scheme", "=", "self", ".", "resource_config", ".", ...	44.787879	23.272727
def to_list(file_path): """ Static method. Takes in a file path, and outputs a list of stings. Each element in the list corresponds to a line in the file. :param file_path: string file path :return: A list of strings, with elements in the list corresponding to lines in th...	[ "def", "to_list", "(", "file_path", ")", ":", "l", "=", "[", "]", "f", "=", "open", "(", "file_path", ",", "'r'", ")", "for", "line", "in", "f", ":", "l", ".", "append", "(", "line", ")", "f", ".", "close", "(", ")", "return", "l" ]	34.428571	17.142857
def section_meander_angles(section): '''Inter-segment opening angles in a section''' p = section.points return [mm.angle_3points(p[i - 1], p[i - 2], p[i]) for i in range(2, len(p))]	[ "def", "section_meander_angles", "(", "section", ")", ":", "p", "=", "section", ".", "points", "return", "[", "mm", ".", "angle_3points", "(", "p", "[", "i", "-", "1", "]", ",", "p", "[", "i", "-", "2", "]", ",", "p", "[", "i", "]", ")", "for",...	40.2	9.8
def get_favorite_radio_shows(self, args, *kwargs): """Convenience method for `get_music_library_information` with ``search_type='radio_stations'``. For details of other arguments, see `that method <#soco.music_library.MusicLibrary.get_music_library_information>`_. """ a...	[ "def", "get_favorite_radio_shows", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "args", "=", "tuple", "(", "[", "'radio_shows'", "]", "+", "list", "(", "args", ")", ")", "return", "self", ".", "get_music_library_information", "(", "...	52.625	17.125
def get_driver_class(provider): """ Return the driver class :param provider: str - provider name :return: """ if "." in provider: parts = provider.split('.') kls = parts.pop() path = '.'.join(parts) module = import_module(path) if not hasattr(module, kls):...	[ "def", "get_driver_class", "(", "provider", ")", ":", "if", "\".\"", "in", "provider", ":", "parts", "=", "provider", ".", "split", "(", "'.'", ")", "kls", "=", "parts", ".", "pop", "(", ")", "path", "=", "'.'", ".", "join", "(", "parts", ")", "mod...	28.789474	12.052632
def execute(self, commands=None, ignored_commands=('DROP', 'UNLOCK', 'LOCK'), execute_fails=True, max_executions=MAX_EXECUTION_ATTEMPTS): """ Sequentially execute a list of SQL commands. Check if commands property has already been fetched, if so use the fetched_commands ...	[ "def", "execute", "(", "self", ",", "commands", "=", "None", ",", "ignored_commands", "=", "(", "'DROP'", ",", "'UNLOCK'", ",", "'LOCK'", ")", ",", "execute_fails", "=", "True", ",", "max_executions", "=", "MAX_EXECUTION_ATTEMPTS", ")", ":", "# Break connectio...	40.116279	20.953488
def get_subdomain_entry(self, fqn, accepted=True, cur=None): """ Given a fully-qualified subdomain, get its (latest) subdomain record. Raises SubdomainNotFound if there is no such subdomain """ get_cmd = "SELECT * FROM {} WHERE fully_qualified_subdomain=? {} ORDER BY sequence DES...	[ "def", "get_subdomain_entry", "(", "self", ",", "fqn", ",", "accepted", "=", "True", ",", "cur", "=", "None", ")", ":", "get_cmd", "=", "\"SELECT * FROM {} WHERE fully_qualified_subdomain=? {} ORDER BY sequence DESC, parent_zonefile_index DESC LIMIT 1;\"", ".", "format", "(...	37.333333	24.190476
def optical_flow_rad_send(self, time_usec, sensor_id, integration_time_us, integrated_x, integrated_y, integrated_xgyro, integrated_ygyro, integrated_zgyro, temperature, quality, time_delta_distance_us, distance, force_mavlink1=False): ''' Optical flow from an angular rate flow sensor (e...	[ "def", "optical_flow_rad_send", "(", "self", ",", "time_usec", ",", "sensor_id", ",", "integration_time_us", ",", "integrated_x", ",", "integrated_y", ",", "integrated_xgyro", ",", "integrated_ygyro", ",", "integrated_zgyro", ",", "temperature", ",", "quality", ",", ...	112.7	86.6
def fetch_open_orders(self, limit: int) -> List[Order]: """Fetch latest open orders, must provide a limit.""" return self._fetch_orders_limit(self._open_orders, limit)	[ "def", "fetch_open_orders", "(", "self", ",", "limit", ":", "int", ")", "->", "List", "[", "Order", "]", ":", "return", "self", ".", "_fetch_orders_limit", "(", "self", ".", "_open_orders", ",", "limit", ")" ]	60.333333	13.333333
def get_dashboard(self, id, kwargs): """"Retrieve a (v2) dashboard by id. """ resp = self._get_object_by_name(self._DASHBOARD_ENDPOINT_SUFFIX, id, kwargs) return resp	[ "def", "get_dashboard", "(", "self", ",", "id", ",", "", "", "kwargs", ")", ":", "resp", "=", "self", ".", "_get_object_by_name", "(", "self", ".", "_DASHBOARD_ENDPOINT_SUFFIX", ",", "id", ",", "", "", "kwargs", ")", "return", "resp" ]	39.5	11.333333
def _parse_record(self, field, boxscore, index): """ Parse each team's record. Find the record for both the home and away teams which are listed above the basic boxscore stats tables. Depending on whether or not the advanced stats table is included on the page (generally only fo...	[ "def", "_parse_record", "(", "self", ",", "field", ",", "boxscore", ",", "index", ")", ":", "records", "=", "boxscore", "(", "BOXSCORE_SCHEME", "[", "field", "]", ")", ".", "items", "(", ")", "records", "=", "[", "x", ".", "text", "(", ")", "for", ...	40.62069	23.586207
def execute(self): """Execute a system command.""" if self._decode_output: # Capture and decode system output with Popen(self.command, shell=True, stdout=PIPE) as process: self._output = [i.decode("utf-8").strip() for i in process.stdout] self._suc...	[ "def", "execute", "(", "self", ")", ":", "if", "self", ".", "_decode_output", ":", "# Capture and decode system output", "with", "Popen", "(", "self", ".", "command", ",", "shell", "=", "True", ",", "stdout", "=", "PIPE", ")", "as", "process", ":", "self",...	39.166667	15.25
def get_from_postcode(postcode, distance): """ Request all postcode data within `distance` miles of `postcode`. :param postcode: the postcode to search for. The postcode may contain spaces (they will be removed). :param distance: distance in miles to `postcode`. :returns: a ...	[ "def", "get_from_postcode", "(", "postcode", ",", "distance", ")", ":", "postcode", "=", "quote", "(", "postcode", ".", "replace", "(", "' '", ",", "''", ")", ")", "return", "_get_from", "(", "distance", ",", "'postcode=%s'", "%", "postcode", ")" ]	38.642857	20.5
def list_mount(): ''' List mounted zfs filesystems .. versionadded:: 2018.3.1 CLI Example: .. code-block:: bash salt '*' zfs.list_mount ''' ## List mounted filesystem res = __salt__['cmd.run_all']( __utils__['zfs.zfs_command']( command='mount', ),...	[ "def", "list_mount", "(", ")", ":", "## List mounted filesystem", "res", "=", "__salt__", "[", "'cmd.run_all'", "]", "(", "__utils__", "[", "'zfs.zfs_command'", "]", "(", "command", "=", "'mount'", ",", ")", ",", "python_shell", "=", "False", ",", ")", "if",...	20.37931	21.344828
def get_absolute_url(self): """Get model url""" return reverse('trionyx:model-view', kwargs={ 'app': self._meta.app_label, 'model': self._meta.model_name, 'pk': self.id })	[ "def", "get_absolute_url", "(", "self", ")", ":", "return", "reverse", "(", "'trionyx:model-view'", ",", "kwargs", "=", "{", "'app'", ":", "self", ".", "_meta", ".", "app_label", ",", "'model'", ":", "self", ".", "_meta", ".", "model_name", ",", "'pk'", ...	32.142857	10.571429
def full_domain_validator(hostname): """ Fully validates a domain name as compilant with the standard rules: - Composed of series of labels concatenated with dots, as are all domain names. - Each label must be between 1 and 63 characters long. - The entire hostname (including the delimit...	[ "def", "full_domain_validator", "(", "hostname", ")", ":", "HOSTNAME_LABEL_PATTERN", "=", "re", ".", "compile", "(", "\"(?!-)[A-Z\\d-]+(?<!-)$\"", ",", "re", ".", "IGNORECASE", ")", "if", "not", "hostname", ":", "return", "if", "len", "(", "hostname", ")", ">"...	52.956522	27.73913
def append_flipped_images(self): """Only flip boxes coordinates, images will be flipped when loading into network""" logger.info('%s append flipped images to roidb' % self._name) roidb_flipped = [] for roi_rec in self._roidb: boxes = roi_rec['boxes'].copy() oldx1 ...	[ "def", "append_flipped_images", "(", "self", ")", ":", "logger", ".", "info", "(", "'%s append flipped images to roidb'", "%", "self", ".", "_name", ")", "roidb_flipped", "=", "[", "]", "for", "roi_rec", "in", "self", ".", "_roidb", ":", "boxes", "=", "roi_r...	47.25	7.9375
async def _sem_crawl(self, sem, res): """ use semaphore ``encapsulate`` the crawl_media \n with async crawl, should avoid crawl too fast to become DDos attack to the crawled server should set the ``semaphore size``, and take ``a little gap`` between each crawl behavior. :param sem: the ...	[ "async", "def", "_sem_crawl", "(", "self", ",", "sem", ",", "res", ")", ":", "async", "with", "sem", ":", "st_", "=", "await", "self", ".", "crawl_raw", "(", "res", ")", "if", "st_", ":", "self", ".", "result", "[", "'ok'", "]", "+=", "1", "else"...	33.238095	18.809524
def backup_progress(self): """Return status of cloud backup as a dict. Is there a way to get progress for Server version? """ epoch_time = int(time.time() * 1000) if self.deploymentType == 'Cloud': url = self._options['server'] + '/rest/obm/1.0/getprogress?_=%i' % ep...	[ "def", "backup_progress", "(", "self", ")", ":", "epoch_time", "=", "int", "(", "time", ".", "time", "(", ")", "*", "1000", ")", "if", "self", ".", "deploymentType", "==", "'Cloud'", ":", "url", "=", "self", ".", "_options", "[", "'server'", "]", "+"...	38.034483	17.827586
def makeNodeID(Rec, ndType, extras = None): """Helper to make a node ID, extras is currently not used""" if ndType == 'raw': recID = Rec else: recID = Rec.get(ndType) if recID is None: pass elif isinstance(recID, list): recID = tuple(recID) else: recID = r...	[ "def", "makeNodeID", "(", "Rec", ",", "ndType", ",", "extras", "=", "None", ")", ":", "if", "ndType", "==", "'raw'", ":", "recID", "=", "Rec", "else", ":", "recID", "=", "Rec", ".", "get", "(", "ndType", ")", "if", "recID", "is", "None", ":", "pa...	26.4	15.8
def train(self, record): """ Incrementally updates the tree with the given sample record. """ assert self.data.class_attribute_name in record, \ "The class attribute must be present in the record." record = record.copy() self.sample_count += 1 self.tre...	[ "def", "train", "(", "self", ",", "record", ")", ":", "assert", "self", ".", "data", ".", "class_attribute_name", "in", "record", ",", "\"The class attribute must be present in the record.\"", "record", "=", "record", ".", "copy", "(", ")", "self", ".", "sample_...	36.333333	12.777778
def with_arg_count(self, count): """Set the last call to expect an exact argument count. I.E.:: >>> auth = Fake('auth').provides('login').with_arg_count(2) >>> auth.login('joe_user') # forgot password Traceback (most recent call last): ... As...	[ "def", "with_arg_count", "(", "self", ",", "count", ")", ":", "exp", "=", "self", ".", "_get_current_call", "(", ")", "exp", ".", "expected_arg_count", "=", "count", "return", "self" ]	32.533333	20.133333
def pull(self, action, image_name, **kwargs): """ Pulls an image for a container configuration :param action: Action configuration. :type action: dockermap.map.runner.ActionConfig :param image_name: Image name. :type image_name: unicode \| str :param kwargs: Addit...	[ "def", "pull", "(", "self", ",", "action", ",", "image_name", ",", "", "", "kwargs", ")", ":", "config_id", "=", "action", ".", "config_id", "registry", ",", "__", ",", "image", "=", "config_id", ".", "config_name", ".", "rpartition", "(", "'/'", ")"...	55.857143	26.52381
def analyze(fqdn, result, argl, argd): """Analyzes the result from calling the method with the specified FQDN. Args: fqdn (str): full-qualified name of the method that was called. result: result of calling the method with `fqdn`. argl (tuple): positional arguments passed to the method c...	[ "def", "analyze", "(", "fqdn", ",", "result", ",", "argl", ",", "argd", ")", ":", "package", "=", "fqdn", ".", "split", "(", "'.'", ")", "[", "0", "]", "if", "package", "not", "in", "_methods", ":", "_load_methods", "(", "package", ")", "if", "_met...	41.666667	19.133333
def render(self, request, instance, kwargs): """ Only render the plugin if the item can be shown to the user """ if instance.get_item(): return super(LinkPlugin, self).render(request, instance, kwargs) return ""	[ "def", "render", "(", "self", ",", "request", ",", "instance", ",", "", "", "kwargs", ")", ":", "if", "instance", ".", "get_item", "(", ")", ":", "return", "super", "(", "LinkPlugin", ",", "self", ")", ".", "render", "(", "request", ",", "instance"...	37.285714	14.714286
def check_db_for_missing_notifications(): """Check the database for missing notifications.""" aws_access_key_id = os.environ['aws_access_key_id'] aws_secret_access_key = os.environ['aws_secret_access_key'] if config.getboolean('Shell Parameters', 'launch_in_sandbox_mode'): conn = MTurkConnection...	[ "def", "check_db_for_missing_notifications", "(", ")", ":", "aws_access_key_id", "=", "os", ".", "environ", "[", "'aws_access_key_id'", "]", "aws_secret_access_key", "=", "os", ".", "environ", "[", "'aws_secret_access_key'", "]", "if", "config", ".", "getboolean", "...	51.824074	21.666667
def _hashes_match(self, a, b): """Constant time comparison of bytes for py3, strings for py2""" if len(a) != len(b): return False diff = 0 if six.PY2: a = bytearray(a) b = bytearray(b) for x, y in zip(a, b): diff \|= x ^ y re...	[ "def", "_hashes_match", "(", "self", ",", "a", ",", "b", ")", ":", "if", "len", "(", "a", ")", "!=", "len", "(", "b", ")", ":", "return", "False", "diff", "=", "0", "if", "six", ".", "PY2", ":", "a", "=", "bytearray", "(", "a", ")", "b", "=...	29.363636	13.545455
def delcal(mspath): """Delete the ``MODEL_DATA`` and ``CORRECTED_DATA`` columns from a measurement set. mspath (str) The path to the MS to modify Example:: from pwkit.environments.casa import tasks tasks.delcal('dataset.ms') """ wantremove = 'MODEL_DATA CORRECTED_DATA'.split() ...	[ "def", "delcal", "(", "mspath", ")", ":", "wantremove", "=", "'MODEL_DATA CORRECTED_DATA'", ".", "split", "(", ")", "tb", "=", "util", ".", "tools", ".", "table", "(", ")", "tb", ".", "open", "(", "b", "(", "mspath", ")", ",", "nomodify", "=", "False...	26.777778	18.62963
def head(records, head): """ Limit results to the top N records. With the leading `-', print all but the last N records. """ logging.info('Applying _head generator: ' 'limiting results to top ' + head + ' records.') if head == '-0': for record in records: yi...	[ "def", "head", "(", "records", ",", "head", ")", ":", "logging", ".", "info", "(", "'Applying _head generator: '", "'limiting results to top '", "+", "head", "+", "' records.'", ")", "if", "head", "==", "'-0'", ":", "for", "record", "in", "records", ":", "yi...	33.45	14.85
def store_uploaded_file(title, uploaded_file): """ Stores a temporary uploaded file on disk """ upload_dir_path = '%s/static/taskManager/uploads' % ( os.path.dirname(os.path.realpath(__file__))) if not os.path.exists(upload_dir_path): os.makedirs(upload_dir_path) # A1: Injection (shell)...	[ "def", "store_uploaded_file", "(", "title", ",", "uploaded_file", ")", ":", "upload_dir_path", "=", "'%s/static/taskManager/uploads'", "%", "(", "os", ".", "path", ".", "dirname", "(", "os", ".", "path", ".", "realpath", "(", "__file__", ")", ")", ")", "if",...	31.333333	17
def templates(self, timeout=None): """ API call to get a list of templates """ return self._api_request( self.TEMPLATES_ENDPOINT, self.HTTP_GET, timeout=timeout )	[ "def", "templates", "(", "self", ",", "timeout", "=", "None", ")", ":", "return", "self", ".", "_api_request", "(", "self", ".", "TEMPLATES_ENDPOINT", ",", "self", ".", "HTTP_GET", ",", "timeout", "=", "timeout", ")" ]	30.857143	10.714286
def read_samples(self, sr=None, offset=0, duration=None): """ Read the samples of the utterance. Args: sr (int): If None uses the sampling rate given by the track, otherwise resamples to the given sampling rate. offset (float): Offset in seconds to ...	[ "def", "read_samples", "(", "self", ",", "sr", "=", "None", ",", "offset", "=", "0", ",", "duration", "=", "None", ")", ":", "read_duration", "=", "self", ".", "duration", "if", "offset", ">", "0", "and", "read_duration", "is", "not", "None", ":", "r...	33.0625	19.5
def get_selection_owner(self, selection): """Return the window that owns selection (an atom), or X.NONE if there is no owner for the selection. Can raise BadAtom.""" r = request.GetSelectionOwner(display = self.display, selection = selection) return ...	[ "def", "get_selection_owner", "(", "self", ",", "selection", ")", ":", "r", "=", "request", ".", "GetSelectionOwner", "(", "display", "=", "self", ".", "display", ",", "selection", "=", "selection", ")", "return", "r", ".", "owner" ]	53.666667	10
def utf8(value): """Converts a string argument to a byte string. If the argument is already a byte string or None, it is returned unchanged. Otherwise it must be a unicode string and is encoded as utf8. """ if isinstance(value, _UTF8_TYPES): return value assert isinstance(value, unicode...	[ "def", "utf8", "(", "value", ")", ":", "if", "isinstance", "(", "value", ",", "_UTF8_TYPES", ")", ":", "return", "value", "assert", "isinstance", "(", "value", ",", "unicode", ")", "return", "value", ".", "encode", "(", "\"utf-8\"", ")" ]	34.5	16.1
def add_data(self, *args): """Add data to signer""" for data in args: self._data.append(to_binary(data))	[ "def", "add_data", "(", "self", ",", "*", "args", ")", ":", "for", "data", "in", "args", ":", "self", ".", "_data", ".", "append", "(", "to_binary", "(", "data", ")", ")" ]	32.25	8.75
def _flann_args(self, X=None): "The dictionary of arguments to give to FLANN." args = {'cores': self._n_jobs} if self.flann_algorithm == 'auto': if X is None or X.dim > 5: args['algorithm'] = 'linear' else: args['algorithm'] = 'kdtree_singl...	[ "def", "_flann_args", "(", "self", ",", "X", "=", "None", ")", ":", "args", "=", "{", "'cores'", ":", "self", ".", "_n_jobs", "}", "if", "self", ".", "flann_algorithm", "==", "'auto'", ":", "if", "X", "is", "None", "or", "X", ".", "dim", ">", "5"...	33.571429	13.666667
def ReadStatusBit(self, bit): ' Report given status bit ' spi.SPI_write_byte(self.CS, 0x39) # Read from address 0x19 (STATUS) spi.SPI_write_byte(self.CS, 0x00) data0 = spi.SPI_read_byte() # 1st byte spi.SPI_write_byte(self.CS, 0x00) data1 = spi.SPI_read_byte()...	[ "def", "ReadStatusBit", "(", "self", ",", "bit", ")", ":", "spi", ".", "SPI_write_byte", "(", "self", ".", "CS", ",", "0x39", ")", "# Read from address 0x19 (STATUS)", "spi", ".", "SPI_write_byte", "(", "self", ".", "CS", ",", "0x00", ")", "data0", "=", ...	44.923077	14.461538
def generate_hooked_command(cmd_name, cmd_cls, hooks): """ Returns a generated subclass of ``cmd_cls`` that runs the pre- and post-command hooks for that command before and after the ``cmd_cls.run`` method. """ def run(self, orig_run=cmd_cls.run): self.run_command_hooks('pre_hooks') ...	[ "def", "generate_hooked_command", "(", "cmd_name", ",", "cmd_cls", ",", "hooks", ")", ":", "def", "run", "(", "self", ",", "orig_run", "=", "cmd_cls", ".", "run", ")", ":", "self", ".", "run_command_hooks", "(", "'pre_hooks'", ")", "orig_run", "(", "self",...	36.9375	16.9375
def read_and_save_data(info_df, raw_dir, sep=";", force_raw=False, force_cellpy=False, export_cycles=False, shifted_cycles=False, export_raw=True, export_ica=False, save=True, use_cellpy_stat_file=False, p...	[ "def", "read_and_save_data", "(", "info_df", ",", "raw_dir", ",", "sep", "=", "\";\"", ",", "force_raw", "=", "False", ",", "force_cellpy", "=", "False", ",", "export_cycles", "=", "False", ",", "shifted_cycles", "=", "False", ",", "export_raw", "=", "True",...	41.657895	21.184211
def zero_state(self, batch_size): """ Initial state of the network """ return torch.zeros(batch_size, self.state_dim, dtype=torch.float32)	[ "def", "zero_state", "(", "self", ",", "batch_size", ")", ":", "return", "torch", ".", "zeros", "(", "batch_size", ",", "self", ".", "state_dim", ",", "dtype", "=", "torch", ".", "float32", ")" ]	50.666667	14
def get_unit_by_name(self, unit_name: str) -> typing.Optional['BaseUnit']: """ Gets a unit from its name Args: unit_name: unit name Returns: """ VALID_STR.validate(unit_name, 'get_unit_by_name') for unit in self.units: if unit.unit_name ...	[ "def", "get_unit_by_name", "(", "self", ",", "unit_name", ":", "str", ")", "->", "typing", ".", "Optional", "[", "'BaseUnit'", "]", ":", "VALID_STR", ".", "validate", "(", "unit_name", ",", "'get_unit_by_name'", ")", "for", "unit", "in", "self", ".", "unit...	24.466667	18.866667
def make_structure_from_geos(geos): '''Creates a structure out of a list of geometry objects.''' model_structure=initialize_res(geos[0]) for i in range(1,len(geos)): model_structure=add_residue(model_structure, geos[i]) return model_structure	[ "def", "make_structure_from_geos", "(", "geos", ")", ":", "model_structure", "=", "initialize_res", "(", "geos", "[", "0", "]", ")", "for", "i", "in", "range", "(", "1", ",", "len", "(", "geos", ")", ")", ":", "model_structure", "=", "add_residue", "(", ...	37.285714	16.428571
def heading(self, column, option=None, **kw): """ Query or modify the heading options for the specified column. If `kw` is not given, returns a dict of the heading option values. If `option` is specified then the value for that option is returned. Otherwise, sets the options to ...	[ "def", "heading", "(", "self", ",", "column", ",", "option", "=", "None", ",", "", "", "kw", ")", ":", "if", "kw", ":", "# Set the default image of the heading to the drag icon", "kw", ".", "setdefault", "(", "\"image\"", ",", "self", ".", "_im_drag", ")",...	47.347826	23.434783
def _aspect_preserving_resize(image, resize_min): """Resize images preserving the original aspect ratio. Args: image: A 3-D image `Tensor`. resize_min: A python integer or scalar `Tensor` indicating the size of the smallest side after resize. Returns: resized_image: A 3-D tensor containing the...	[ "def", "_aspect_preserving_resize", "(", "image", ",", "resize_min", ")", ":", "mlperf_log", ".", "resnet_print", "(", "key", "=", "mlperf_log", ".", "INPUT_RESIZE_ASPECT_PRESERVING", ",", "value", "=", "{", "\"min\"", ":", "resize_min", "}", ")", "shape", "=", ...	32.2	22.45
def get_records(cls, ids, with_deleted=False): """Retrieve multiple records by id. :param ids: List of record IDs. :param with_deleted: If `True` then it includes deleted records. :returns: A list of :class:`Record` instances. """ with db.session.no_autoflush: ...	[ "def", "get_records", "(", "cls", ",", "ids", ",", "with_deleted", "=", "False", ")", ":", "with", "db", ".", "session", ".", "no_autoflush", ":", "query", "=", "RecordMetadata", ".", "query", ".", "filter", "(", "RecordMetadata", ".", "id", ".", "in_", ...	42.307692	18.461538
def data(path, hours, offset=0): """ Does the metric at ``path`` have any whisper data newer than ``hours``? If ``offset`` is not None, view the ``hours`` prior to ``offset`` hours ago, instead of from right now. """ now = time.time() end = now - _to_sec(offset) # Will default to now s...	[ "def", "data", "(", "path", ",", "hours", ",", "offset", "=", "0", ")", ":", "now", "=", "time", ".", "time", "(", ")", "end", "=", "now", "-", "_to_sec", "(", "offset", ")", "# Will default to now", "start", "=", "end", "-", "_to_sec", "(", "hours...	35.416667	14.25
def _decrypt_symmetric( self, decryption_algorithm, decryption_key, cipher_text, cipher_mode=None, padding_method=None, iv_nonce=None): """ Decrypt data using symmetric decryption. Args: decryption_a...	[ "def", "_decrypt_symmetric", "(", "self", ",", "decryption_algorithm", ",", "decryption_key", ",", "cipher_text", ",", "cipher_mode", "=", "None", ",", "padding_method", "=", "None", ",", "iv_nonce", "=", "None", ")", ":", "# Set up the algorithm", "algorithm", "=...	39.122449	20.122449
def _handle_error(self, data, params): """Handle an error response from the SABnzbd API""" error = data.get('error', 'API call failed') mode = params.get('mode') raise SabnzbdApiException(error, mode=mode)	[ "def", "_handle_error", "(", "self", ",", "data", ",", "params", ")", ":", "error", "=", "data", ".", "get", "(", "'error'", ",", "'API call failed'", ")", "mode", "=", "params", ".", "get", "(", "'mode'", ")", "raise", "SabnzbdApiException", "(", "error...	46.6	6.4
def _validate(self): """ Step 5 (1st flow) or Step 4 (2nd flow). Process contract for object. """ # disable methods matching before validation self._disable_patching = True # validation by Invariant.validate self._validate_base(self) # enable methods match...	[ "def", "_validate", "(", "self", ")", ":", "# disable methods matching before validation", "self", ".", "_disable_patching", "=", "True", "# validation by Invariant.validate", "self", ".", "_validate_base", "(", "self", ")", "# enable methods matching after validation", "self...	37	9.2
def request(self, method, url, params=None, data=None, headers=None, auth=None, timeout=None, allow_redirects=False): """ Make an HTTP request. """ raise TwilioException('HttpClient is an abstract class')	[ "def", "request", "(", "self", ",", "method", ",", "url", ",", "params", "=", "None", ",", "data", "=", "None", ",", "headers", "=", "None", ",", "auth", "=", "None", ",", "timeout", "=", "None", ",", "allow_redirects", "=", "False", ")", ":", "rai...	41.166667	14.5
def MAE(x1, x2=-1): """ Mean absolute error - this function accepts two series of data or directly one series with error. Args: * `x1` - first data series or error (1d array) Kwargs: * `x2` - second series (1d array) if first series was not error directly,\\ then this sho...	[ "def", "MAE", "(", "x1", ",", "x2", "=", "-", "1", ")", ":", "e", "=", "get_valid_error", "(", "x1", ",", "x2", ")", "return", "np", ".", "sum", "(", "np", ".", "abs", "(", "e", ")", ")", "/", "float", "(", "len", "(", "e", ")", ")" ]	24.409091	23.772727
def local_pdb_codes(data_dir=None): """ Get list of PDB codes stored in a folder (FileSystem folder hierarchy expected within data_dir). If no folder is specified, use the database_dir defined in settings.json. Parameters ---------- data_dir: str Filepath to a folder containing the PDB fol...	[ "def", "local_pdb_codes", "(", "data_dir", "=", "None", ")", ":", "if", "not", "data_dir", ":", "data_dir", "=", "global_settings", "[", "\"structural_database\"", "]", "[", "\"path\"", "]", "p", "=", "Path", "(", "data_dir", ")", "pdb_parent_dirs", "=", "["...	35.913043	26.304348
def check_the_end_flag(self, state_key): ''' Check the end flag. If this return value is `True`, the learning is end. Args: state_key: The key of state in `self.t`. Returns: bool ''' # As a rule, the learning can not be stoppe...	[ "def", "check_the_end_flag", "(", "self", ",", "state_key", ")", ":", "# As a rule, the learning can not be stopped.", "x", ",", "y", "=", "state_key", "end_point_tuple", "=", "np", ".", "where", "(", "self", ".", "__map_arr", "==", "self", ".", "__end_point_label...	29.55	22.95
def _setup_bindings(self): """ Setup the event bindings for the widgets: Configure for _timeline Horizontal and Vertical scrolling for all widgets """ self._timeline.bind("<Configure>", self.__configure_timeline) for widget in [self, self._canvas_scroll, self._tim...	[ "def", "_setup_bindings", "(", "self", ")", ":", "self", ".", "_timeline", ".", "bind", "(", "\"<Configure>\"", ",", "self", ".", "__configure_timeline", ")", "for", "widget", "in", "[", "self", ",", "self", ".", "_canvas_scroll", ",", "self", ".", "_timel...	54.722222	21.944444
def image_predict(self, X): """ Predicts class label for the entire image. Parameters: ----------- X: array, shape = [n_samples, n_pixels_y, n_pixels_x, n_bands] Array of training images y: array, shape = [n_samples] or [n_samples, n_pixels_y, n_p...	[ "def", "image_predict", "(", "self", ",", "X", ")", ":", "self", ".", "_check_image", "(", "X", ")", "new_shape", "=", "(", "X", ".", "shape", "[", "0", "]", "", "X", ".", "shape", "[", "1", "]", "", "X", ".", "shape", "[", "2", "]", ",", ...	28.6	22.44
def printConfig(self, type='simu'): """ print information about element :param type: comm, simu, ctrl, misc, all """ print("{s1}{s2:^22s}{s1}".format(s1="-" * 10, s2="Configuration START")) print("Element name: {en} ({cn})".format(en=self.name, cn=self.__class__.__name__)) ...	[ "def", "printConfig", "(", "self", ",", "type", "=", "'simu'", ")", ":", "print", "(", "\"{s1}{s2:^22s}{s1}\"", ".", "format", "(", "s1", "=", "\"-\"", "*", "10", ",", "s2", "=", "\"Configuration START\"", ")", ")", "print", "(", "\"Element name: {en} ({cn})...	48.363636	21.090909
def cli(ctx, feature_id, attribute_key, attribute_value, organism="", sequence=""): """Delete an attribute from a feature Output: A standard apollo feature dictionary ({"features": [{...}]}) """ return ctx.gi.annotations.delete_attribute(feature_id, attribute_key, attribute_value, organism=organism, s...	[ "def", "cli", "(", "ctx", ",", "feature_id", ",", "attribute_key", ",", "attribute_value", ",", "organism", "=", "\"\"", ",", "sequence", "=", "\"\"", ")", ":", "return", "ctx", ".", "gi", ".", "annotations", ".", "delete_attribute", "(", "feature_id", ","...	41.25	33.5
def xpath_eval(node, extra_ns=None): """ Returns an XPathEvaluator, with namespace prefixes 'bpmn' for http://www.omg.org/spec/BPMN/20100524/MODEL, and additional specified ones """ namespaces = {'bpmn': BPMN_MODEL_NS} if extra_ns: namespaces.update(extra_ns) return lambda path: node...	[ "def", "xpath_eval", "(", "node", ",", "extra_ns", "=", "None", ")", ":", "namespaces", "=", "{", "'bpmn'", ":", "BPMN_MODEL_NS", "}", "if", "extra_ns", ":", "namespaces", ".", "update", "(", "extra_ns", ")", "return", "lambda", "path", ":", "node", ".",...	37.555556	12.222222
def update(self, list_id, webhook_id, data): """ Update the settings for an existing webhook. :param list_id: The unique id for the list :type list_id: :py:class:`str` :param webhook_id: The unique id for the webhook :type webhook_id: :py:class:`str` """ ...	[ "def", "update", "(", "self", ",", "list_id", ",", "webhook_id", ",", "data", ")", ":", "self", ".", "list_id", "=", "list_id", "self", ".", "webhook_id", "=", "webhook_id", "return", "self", ".", "_mc_client", ".", "_patch", "(", "url", "=", "self", "...	39.333333	13.5
def get_python_path(venv_path): """ Get given virtual environment's `python` program path. :param venv_path: Virtual environment directory path. :return: `python` program path. """ # Get `bin` directory path bin_path = get_bin_path(venv_path) # Get `python` program path program_pa...	[ "def", "get_python_path", "(", "venv_path", ")", ":", "# Get `bin` directory path", "bin_path", "=", "get_bin_path", "(", "venv_path", ")", "# Get `python` program path", "program_path", "=", "os", ".", "path", ".", "join", "(", "bin_path", ",", "'python'", ")", "...	27.428571	15.714286
def set_mag_offsets_encode(self, target_system, target_component, mag_ofs_x, mag_ofs_y, mag_ofs_z): ''' Deprecated. Use MAV_CMD_PREFLIGHT_SET_SENSOR_OFFSETS instead. Set the magnetometer offsets target_system : System ID (uint8_t) ...	[ "def", "set_mag_offsets_encode", "(", "self", ",", "target_system", ",", "target_component", ",", "mag_ofs_x", ",", "mag_ofs_y", ",", "mag_ofs_z", ")", ":", "return", "MAVLink_set_mag_offsets_message", "(", "target_system", ",", "target_component", ",", "mag_ofs_x", "...	56.307692	35.692308
def _unpack(self, tar_file, directory): """ Unpacks tar archive to selected directory """ self.log.info("Unpacking %s tar file to %s directory" % (tar_file, directory)) with tarfile.open(tar_file, 'r') as tar: tar.extractall(path=directory) self.log.i...	[ "def", "_unpack", "(", "self", ",", "tar_file", ",", "directory", ")", ":", "self", ".", "log", ".", "info", "(", "\"Unpacking %s tar file to %s directory\"", "%", "(", "tar_file", ",", "directory", ")", ")", "with", "tarfile", ".", "open", "(", "tar_file", ...	33.5	16
def delayed_redraw(self): """Handle delayed redrawing of the canvas.""" # This is the optimized redraw method with self._defer_lock: # pick up the lowest necessary level of redrawing whence = self._defer_whence self._defer_whence = self._defer_whence_reset ...	[ "def", "delayed_redraw", "(", "self", ")", ":", "# This is the optimized redraw method", "with", "self", ".", "_defer_lock", ":", "# pick up the lowest necessary level of redrawing", "whence", "=", "self", ".", "_defer_whence", "self", ".", "_defer_whence", "=", "self", ...	34.928571	13.857143
def _encode(data): """Encode the given data using base-64 :param data: :return: base-64 encoded string """ if not isinstance(data, bytes_types): data = six.b(str(data)) return base64.b64encode(data).decode("utf-8")	[ "def", "_encode", "(", "data", ")", ":", "if", "not", "isinstance", "(", "data", ",", "bytes_types", ")", ":", "data", "=", "six", ".", "b", "(", "str", "(", "data", ")", ")", "return", "base64", ".", "b64encode", "(", "data", ")", ".", "decode", ...	26.555556	12.222222
def set_document(request, doc_id, body, errors): """ Simple handler for set document :param request: aiohttp.web.Request :param errors: aiohttp_apiset.exceptions.ValidationError optional param for manual raise validation errors :return: dict """ if doc_id in DB: errors...	[ "def", "set_document", "(", "request", ",", "doc_id", ",", "body", ",", "errors", ")", ":", "if", "doc_id", "in", "DB", ":", "errors", "[", "'doc_id'", "]", ".", "add", "(", "'Document already exists'", ")", "if", "errors", ":", "raise", "errors", "body"...	27.333333	18.888889
def update_session(request, session_to_set, hproPk): """Update the session with users-realted values""" for key, value in session_to_set.items(): request.session['plugit_' + str(hproPk) + '_' + key] = value	[ "def", "update_session", "(", "request", ",", "session_to_set", ",", "hproPk", ")", ":", "for", "key", ",", "value", "in", "session_to_set", ".", "items", "(", ")", ":", "request", ".", "session", "[", "'plugit_'", "+", "str", "(", "hproPk", ")", "+", ...	43.8	17
def _get_log_lines(self, n=300): """Returns a list with the last ``n`` lines of the nextflow log file Parameters ---------- n : int Number of last lines from the log file Returns ------- list List of strings with the nextflow log ...	[ "def", "_get_log_lines", "(", "self", ",", "n", "=", "300", ")", ":", "with", "open", "(", "self", ".", "log_file", ")", "as", "fh", ":", "last_lines", "=", "fh", ".", "readlines", "(", ")", "[", "-", "n", ":", "]", "return", "last_lines" ]	23.277778	19.666667
def get_content_type(self): """ Returns the ``Content-Type`` header to be used for this request. """ mime_type, encoding = mimetypes.guess_type(self.filepath) if encoding == "gzip": return "application/gzip" elif encoding is not None: return "appli...	[ "def", "get_content_type", "(", "self", ")", ":", "mime_type", ",", "encoding", "=", "mimetypes", ".", "guess_type", "(", "self", ".", "filepath", ")", "if", "encoding", "==", "\"gzip\"", ":", "return", "\"application/gzip\"", "elif", "encoding", "is", "not", ...	37	12
def _explore_storage(self): """Generator of all files contained in media storage.""" path = '' dirs = [path] while dirs: path = dirs.pop() subdirs, files = self.media_storage.listdir(path) for media_filename in files: yield os.path.join...	[ "def", "_explore_storage", "(", "self", ")", ":", "path", "=", "''", "dirs", "=", "[", "path", "]", "while", "dirs", ":", "path", "=", "dirs", ".", "pop", "(", ")", "subdirs", ",", "files", "=", "self", ".", "media_storage", ".", "listdir", "(", "p...	40.9	15.9
def _compute_baseline_survival(self): """ Importantly, this agrees with what the KaplanMeierFitter produces. Ex: Example ------- >>> from lifelines.datasets import load_rossi >>> from lifelines import CoxPHFitter, KaplanMeierFitter >>> rossi = load_rossi() ...	[ "def", "_compute_baseline_survival", "(", "self", ")", ":", "survival_df", "=", "np", ".", "exp", "(", "-", "self", ".", "baseline_cumulative_hazard_", ")", "if", "self", ".", "strata", "is", "None", ":", "survival_df", ".", "columns", "=", "[", "\"baseline ...	37.727273	13.909091
def rectangle(self, x0, y0, x1, y1): """Draw a rectangle""" x0, y0, x1, y1 = self.rect_helper(x0, y0, x1, y1) self.polyline([[x0, y0], [x1, y0], [x1, y1], [x0, y1], [x0, y0]])	[ "def", "rectangle", "(", "self", ",", "x0", ",", "y0", ",", "x1", ",", "y1", ")", ":", "x0", ",", "y0", ",", "x1", ",", "y1", "=", "self", ".", "rect_helper", "(", "x0", ",", "y0", ",", "x1", ",", "y1", ")", "self", ".", "polyline", "(", "[...	49	13.5
def dlogpdf_df_dtheta(self, f, y, Y_metadata=None): """ TODO: Doc strings """ if self.size > 0: if self.not_block_really: raise NotImplementedError("Need to make a decorator for this!") if isinstance(self.gp_link, link_functions.Identity): ...	[ "def", "dlogpdf_df_dtheta", "(", "self", ",", "f", ",", "y", ",", "Y_metadata", "=", "None", ")", ":", "if", "self", ".", "size", ">", "0", ":", "if", "self", ".", "not_block_really", ":", "raise", "NotImplementedError", "(", "\"Need to make a decorator for ...	49.478261	22.695652
def start_update(self, layer_id): """ A shortcut to create a new version and start importing it. Effectively the same as :py:meth:`koordinates.layers.LayerManager.create_draft` followed by :py:meth:`koordinates.layers.LayerManager.start_import`. """ target_url = self.client.get_u...	[ "def", "start_update", "(", "self", ",", "layer_id", ")", ":", "target_url", "=", "self", ".", "client", ".", "get_url", "(", "'LAYER'", ",", "'POST'", ",", "'update'", ",", "{", "'layer_id'", ":", "layer_id", "}", ")", "r", "=", "self", ".", "client",...	60.375	29.375
def parse_URL(cls, url, timeout=None, resolve=True, required=False, unresolved_value=DEFAULT_SUBSTITUTION): """Parse URL :param url: url to parse :type url: basestring :param resolve: if true, resolve substitutions :type resolve: boolean :param unresolved_value: assigned...	[ "def", "parse_URL", "(", "cls", ",", "url", ",", "timeout", "=", "None", ",", "resolve", "=", "True", ",", "required", "=", "False", ",", "unresolved_value", "=", "DEFAULT_SUBSTITUTION", ")", ":", "socket_timeout", "=", "socket", ".", "_GLOBAL_DEFAULT_TIMEOUT"...	48.846154	27.423077
def process_pybel_graph(graph): """Return a PybelProcessor by processing a PyBEL graph. Parameters ---------- graph : pybel.struct.BELGraph A PyBEL graph to process Returns ------- bp : PybelProcessor A PybelProcessor object which contains INDRA Statements in bp.sta...	[ "def", "process_pybel_graph", "(", "graph", ")", ":", "bp", "=", "PybelProcessor", "(", "graph", ")", "bp", ".", "get_statements", "(", ")", "if", "bp", ".", "annot_manager", ".", "failures", ":", "logger", ".", "warning", "(", "'missing %d annotation pairs'",...	27.619048	18.47619
def Draw(self, dc): ''' Draw the tree map on the device context. ''' self.hot_map = [] dc.BeginDrawing() brush = wx.Brush( self.BackgroundColour ) dc.SetBackground( brush ) dc.Clear() if self.model: self.max_depth_seen = 0 font = self.Font...	[ "def", "Draw", "(", "self", ",", "dc", ")", ":", "self", ".", "hot_map", "=", "[", "]", "dc", ".", "BeginDrawing", "(", ")", "brush", "=", "wx", ".", "Brush", "(", "self", ".", "BackgroundColour", ")", "dc", ".", "SetBackground", "(", "brush", ")",...	36.4	15.2
def context_processor(self, fn): """ Like :meth:`flask.Blueprint.context_processor` but for a bundle. This function is only executed for requests handled by a bundle. """ self._defer(lambda bp: bp.context_processor(fn)) return fn	[ "def", "context_processor", "(", "self", ",", "fn", ")", ":", "self", ".", "_defer", "(", "lambda", "bp", ":", "bp", ".", "context_processor", "(", "fn", ")", ")", "return", "fn" ]	38.714286	15.857143
def on_exit(self, info): """ Handles the user attempting to exit Godot. """ if self.prompt_on_exit:# and (not is_ok): retval = confirm(parent = info.ui.control, message = "Exit Godot?", title = "Confirm exit", ...	[ "def", "on_exit", "(", "self", ",", "info", ")", ":", "if", "self", ".", "prompt_on_exit", ":", "# and (not is_ok):", "retval", "=", "confirm", "(", "parent", "=", "info", ".", "ui", ".", "control", ",", "message", "=", "\"Exit Godot?\"", ",", "title", "...	38.083333	9.666667
def sh2(cmd): """Execute command in a subshell, return stdout. Stderr is unbuffered from the subshell.x""" p = Popen(cmd, stdout=PIPE, shell=True, env=sub_environment()) out = p.communicate()[0] retcode = p.returncode if retcode: raise CalledProcessError(retcode, cmd) else: ...	[ "def", "sh2", "(", "cmd", ")", ":", "p", "=", "Popen", "(", "cmd", ",", "stdout", "=", "PIPE", ",", "shell", "=", "True", ",", "env", "=", "sub_environment", "(", ")", ")", "out", "=", "p", ".", "communicate", "(", ")", "[", "0", "]", "retcode"...	29.909091	17.636364
def _netapp_login(self): """ Login to our netapp filer """ self.server = NaServer(self.ip, 1, 3) self.server.set_transport_type('HTTPS') self.server.set_style('LOGIN') self.server.set_admin_user(self.netapp_user, self.netapp_password)	[ "def", "_netapp_login", "(", "self", ")", ":", "self", ".", "server", "=", "NaServer", "(", "self", ".", "ip", ",", "1", ",", "3", ")", "self", ".", "server", ".", "set_transport_type", "(", "'HTTPS'", ")", "self", ".", "server", ".", "set_style", "(...	34.5	13
def _parse_from_import_names(self, is_future_import): """Parse the 'y' part in a 'from x import y' statement.""" if self.current.value == "(": self.consume(tk.OP) expected_end_kinds = (tk.OP,) else: expected_end_kinds = (tk.NEWLINE, tk.ENDMARKER) while...	[ "def", "_parse_from_import_names", "(", "self", ",", "is_future_import", ")", ":", "if", "self", ".", "current", ".", "value", "==", "\"(\"", ":", "self", ".", "consume", "(", "tk", ".", "OP", ")", "expected_end_kinds", "=", "(", "tk", ".", "OP", ",", ...	40.394737	13.605263

def make_elements(tokens, text, start=0, end=None, fallback=None): """Make elements from a list of parsed tokens. It will turn all unmatched holes into fallback elements. :param tokens: a list of parsed tokens. :param text: the original tet. :param start: the offset of where parsing starts. Default...

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38.409091

15.818182

def create_qcos_client(self, app_uri): """创建资源管理客户端 """ if (self.auth is None): return QcosClient(None) products = self.get_app_region_products(app_uri) auth = self.get_valid_app_auth(app_uri) if products is None or auth is None: return None ...

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23.8

18.133333

def decrypt(*args, **kwargs): """ Decrypts legacy or spec-compliant JOSE token. First attempts to decrypt the token in a legacy mode (https://tools.ietf.org/html/draft-ietf-oauth-json-web-token-19). If it is not a valid legacy token then attempts to decrypt it in a spec-compliant way (http://tools.i...

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44.875

15.25

def _apply(self, element, key=None): """ Applies the operation to the element, executing any pre- and post-processor hooks if defined. """ kwargs = {} for hook in self._preprocess_hooks: kwargs.update(hook(self, element)) ret = self._process(element, k...

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35

7.666667

def reload(self): """ Refreshes the resource with the data from the server. """ try: if hasattr(self, 'href'): data = self._api.get(self.href, append_base=False).json() resource = self.__class__(api=self._api, **data) elif hasattr(s...

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39.925926

20.222222

def load_werkzeug(path): """Load werkzeug.""" sys.path[0] = path # get rid of already imported stuff wz.__dict__.clear() for key in sys.modules.keys(): if key.startswith("werkzeug.") or key == "werkzeug": sys.modules.pop(key, None) # import werkzeug again. import werkze...

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25.852941

19.147059

def resolve(self, authorization: http.Header): """ Determine the user associated with a request, using HTTP Basic Authentication. """ if authorization is None: return None scheme, token = authorization.split() if scheme.lower() != 'basic': return ...

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31.866667

20.4

def neighbors( adata: AnnData, n_neighbors: int = 15, n_pcs: Optional[int] = None, use_rep: Optional[str] = None, knn: bool = True, random_state: Optional[Union[int, RandomState]] = 0, method: str = 'umap', metric: Union[str, Callable[[np.ndarray, np.ndarray], float]] = 'euclidean', ...

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43.824176

23.593407

def minimum_geometries(self, n=None, symmetry_measure_type=None, max_csm=None): """ Returns a list of geometries with increasing continuous symmetry measure in this ChemicalEnvironments object :param n: Number of geometries to be included in the list :return: list of geometries with incr...

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57.208333

31.708333

def factorize(cls, pq): """ Factorizes the given large integer. :param pq: the prime pair pq. :return: a tuple containing the two factors p and q. """ if pq % 2 == 0: return 2, pq // 2 y, c, m = randint(1, pq - 1), randint(1, pq - 1), randint(1, pq -...

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25

18.25

def create(self, module_name, class_name, args=None, kwargs=None, factory_method=None, factory_args=None, factory_kwargs=None, static=False, calls=None): """ Initializes an instance of the service """ if args is None: args = [] if kwargs i...

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35

18.891892

def upgrade(self, instance_id, cpus=None, memory=None, nic_speed=None, public=True, preset=None): """Upgrades a VS instance. Example:: # Upgrade instance 12345 to 4 CPUs and 4 GB of memory import SoftLayer client = SoftLayer.create_client_from_env() mgr = So...

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40.19403

23.970149

def get_server_session(self): """Start or resume a server session, or raise ConfigurationError.""" with self._lock: session_timeout = self._description.logical_session_timeout_minutes if session_timeout is None: # Maybe we need an initial scan? Can raise ServerSel...

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50.833333

19.916667

def _os_install(self, package_file): """ take in a dict return a string of docker build RUN directives one RUN per package type one package type per JSON key """ packages = " ".join(json.load(package_file.open())) if packages: for packager in self.pkg_...

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37.928571

13.642857

def reorient(self, up, look): ''' Reorient the mesh by specifying two vectors. up: The foot-to-head direction. look: The direction the body is facing. In the result, the up will end up along +y, and look along +z (i.e. facing towards a default OpenGL camera). '...

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32.789474

22.368421

def prompt_stdin(prompt): """Ask user for agreeing to data set licenses.""" # raw_input returns the empty string for "enter" yes = set(['yes', 'y']) no = set(['no','n']) try: print(prompt) if sys.version_info>=(3,0): choice = input().lower() else: cho...

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29.071429

18.892857

def ParseGshadowEntry(self, line): """Extract the members of each group from /etc/gshadow. Identifies the groups in /etc/gshadow and several attributes of the group, including how the password is crypted (if set). gshadow files have the format group_name:passwd:admins:members admins are both group...

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39.84

18.88

def execute(self, conn, name='', transaction = False): """ returns id for a given physics group name """ binds={} if name: op = ('=', 'like')['%' in name] sql = self.sql + " WHERE pg.physics_group_name %s :physicsgroup" % (op) binds = {"physic...

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34.529412

13.823529

def documentation_404(self, base_url=None): """Returns a smart 404 page that contains documentation for the written API""" base_url = self.base_url if base_url is None else base_url def handle_404(request, response, *args, **kwargs): url_prefix = request.forwarded_uri[:-1] ...

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52.076923

29.230769

def get_path(self, path=''): """ Validate incoming path, if path is empty, build it from resource attributes, If path is invalid - raise exception :param path: path to remote file storage :return: valid path or :raise Exception: """ if not path: host...

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44.787879

23.272727

def to_list(file_path): """ Static method. Takes in a file path, and outputs a list of stings. Each element in the list corresponds to a line in the file. :param file_path: string file path :return: A list of strings, with elements in the list corresponding to lines in th...

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34.428571

17.142857

def section_meander_angles(section): '''Inter-segment opening angles in a section''' p = section.points return [mm.angle_3points(p[i - 1], p[i - 2], p[i]) for i in range(2, len(p))]

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40.2

9.8

def get_favorite_radio_shows(self, *args, **kwargs): """Convenience method for `get_music_library_information` with ``search_type='radio_stations'``. For details of other arguments, see `that method <#soco.music_library.MusicLibrary.get_music_library_information>`_. """ a...

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52.625

17.125

def get_driver_class(provider): """ Return the driver class :param provider: str - provider name :return: """ if "." in provider: parts = provider.split('.') kls = parts.pop() path = '.'.join(parts) module = import_module(path) if not hasattr(module, kls):...

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28.789474

12.052632

def execute(self, commands=None, ignored_commands=('DROP', 'UNLOCK', 'LOCK'), execute_fails=True, max_executions=MAX_EXECUTION_ATTEMPTS): """ Sequentially execute a list of SQL commands. Check if commands property has already been fetched, if so use the fetched_commands ...

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40.116279

20.953488

def get_subdomain_entry(self, fqn, accepted=True, cur=None): """ Given a fully-qualified subdomain, get its (latest) subdomain record. Raises SubdomainNotFound if there is no such subdomain """ get_cmd = "SELECT * FROM {} WHERE fully_qualified_subdomain=? {} ORDER BY sequence DES...

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37.333333

24.190476

def optical_flow_rad_send(self, time_usec, sensor_id, integration_time_us, integrated_x, integrated_y, integrated_xgyro, integrated_ygyro, integrated_zgyro, temperature, quality, time_delta_distance_us, distance, force_mavlink1=False): ''' Optical flow from an angular rate flow sensor (e...

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112.7

86.6

def fetch_open_orders(self, limit: int) -> List[Order]: """Fetch latest open orders, must provide a limit.""" return self._fetch_orders_limit(self._open_orders, limit)

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def get_dashboard(self, id, **kwargs): """"Retrieve a (v2) dashboard by id. """ resp = self._get_object_by_name(self._DASHBOARD_ENDPOINT_SUFFIX, id, **kwargs) return resp

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39.5

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def _parse_record(self, field, boxscore, index): """ Parse each team's record. Find the record for both the home and away teams which are listed above the basic boxscore stats tables. Depending on whether or not the advanced stats table is included on the page (generally only fo...

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def execute(self): """Execute a system command.""" if self._decode_output: # Capture and decode system output with Popen(self.command, shell=True, stdout=PIPE) as process: self._output = [i.decode("utf-8").strip() for i in process.stdout] self._suc...

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39.166667

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def get_from_postcode(postcode, distance): """ Request all postcode data within `distance` miles of `postcode`. :param postcode: the postcode to search for. The postcode may contain spaces (they will be removed). :param distance: distance in miles to `postcode`. :returns: a ...

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38.642857

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def list_mount(): ''' List mounted zfs filesystems .. versionadded:: 2018.3.1 CLI Example: .. code-block:: bash salt '*' zfs.list_mount ''' ## List mounted filesystem res = __salt__['cmd.run_all']( __utils__['zfs.zfs_command']( command='mount', ),...

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def get_absolute_url(self): """Get model url""" return reverse('trionyx:model-view', kwargs={ 'app': self._meta.app_label, 'model': self._meta.model_name, 'pk': self.id })

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32.142857

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def full_domain_validator(hostname): """ Fully validates a domain name as compilant with the standard rules: - Composed of series of labels concatenated with dots, as are all domain names. - Each label must be between 1 and 63 characters long. - The entire hostname (including the delimit...

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def append_flipped_images(self): """Only flip boxes coordinates, images will be flipped when loading into network""" logger.info('%s append flipped images to roidb' % self._name) roidb_flipped = [] for roi_rec in self._roidb: boxes = roi_rec['boxes'].copy() oldx1 ...

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async def _sem_crawl(self, sem, res): """ use semaphore ``encapsulate`` the crawl_media \n with async crawl, should avoid crawl too fast to become DDos attack to the crawled server should set the ``semaphore size``, and take ``a little gap`` between each crawl behavior. :param sem: the ...

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33.238095

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def backup_progress(self): """Return status of cloud backup as a dict. Is there a way to get progress for Server version? """ epoch_time = int(time.time() * 1000) if self.deploymentType == 'Cloud': url = self._options['server'] + '/rest/obm/1.0/getprogress?_=%i' % ep...

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def makeNodeID(Rec, ndType, extras = None): """Helper to make a node ID, extras is currently not used""" if ndType == 'raw': recID = Rec else: recID = Rec.get(ndType) if recID is None: pass elif isinstance(recID, list): recID = tuple(recID) else: recID = r...

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def train(self, record): """ Incrementally updates the tree with the given sample record. """ assert self.data.class_attribute_name in record, \ "The class attribute must be present in the record." record = record.copy() self.sample_count += 1 self.tre...

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36.333333

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def with_arg_count(self, count): """Set the last call to expect an exact argument count. I.E.:: >>> auth = Fake('auth').provides('login').with_arg_count(2) >>> auth.login('joe_user') # forgot password Traceback (most recent call last): ... As...

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def pull(self, action, image_name, **kwargs): """ Pulls an image for a container configuration :param action: Action configuration. :type action: dockermap.map.runner.ActionConfig :param image_name: Image name. :type image_name: unicode | str :param kwargs: Addit...

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55.857143

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def analyze(fqdn, result, argl, argd): """Analyzes the result from calling the method with the specified FQDN. Args: fqdn (str): full-qualified name of the method that was called. result: result of calling the method with `fqdn`. argl (tuple): positional arguments passed to the method c...

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41.666667

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def render(self, request, instance, **kwargs): """ Only render the plugin if the item can be shown to the user """ if instance.get_item(): return super(LinkPlugin, self).render(request, instance, **kwargs) return ""

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def check_db_for_missing_notifications(): """Check the database for missing notifications.""" aws_access_key_id = os.environ['aws_access_key_id'] aws_secret_access_key = os.environ['aws_secret_access_key'] if config.getboolean('Shell Parameters', 'launch_in_sandbox_mode'): conn = MTurkConnection...

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51.824074

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def _hashes_match(self, a, b): """Constant time comparison of bytes for py3, strings for py2""" if len(a) != len(b): return False diff = 0 if six.PY2: a = bytearray(a) b = bytearray(b) for x, y in zip(a, b): diff |= x ^ y re...

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29.363636

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def delcal(mspath): """Delete the ``MODEL_DATA`` and ``CORRECTED_DATA`` columns from a measurement set. mspath (str) The path to the MS to modify Example:: from pwkit.environments.casa import tasks tasks.delcal('dataset.ms') """ wantremove = 'MODEL_DATA CORRECTED_DATA'.split() ...

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26.777778

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def head(records, head): """ Limit results to the top N records. With the leading `-', print all but the last N records. """ logging.info('Applying _head generator: ' 'limiting results to top ' + head + ' records.') if head == '-0': for record in records: yi...

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33.45

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def store_uploaded_file(title, uploaded_file): """ Stores a temporary uploaded file on disk """ upload_dir_path = '%s/static/taskManager/uploads' % ( os.path.dirname(os.path.realpath(__file__))) if not os.path.exists(upload_dir_path): os.makedirs(upload_dir_path) # A1: Injection (shell)...

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31.333333

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def templates(self, timeout=None): """ API call to get a list of templates """ return self._api_request( self.TEMPLATES_ENDPOINT, self.HTTP_GET, timeout=timeout )

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30.857143

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def read_samples(self, sr=None, offset=0, duration=None): """ Read the samples of the utterance. Args: sr (int): If None uses the sampling rate given by the track, otherwise resamples to the given sampling rate. offset (float): Offset in seconds to ...

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33.0625

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def get_selection_owner(self, selection): """Return the window that owns selection (an atom), or X.NONE if there is no owner for the selection. Can raise BadAtom.""" r = request.GetSelectionOwner(display = self.display, selection = selection) return ...

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53.666667

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def utf8(value): """Converts a string argument to a byte string. If the argument is already a byte string or None, it is returned unchanged. Otherwise it must be a unicode string and is encoded as utf8. """ if isinstance(value, _UTF8_TYPES): return value assert isinstance(value, unicode...

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34.5

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def add_data(self, *args): """Add data to signer""" for data in args: self._data.append(to_binary(data))

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32.25

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def _flann_args(self, X=None): "The dictionary of arguments to give to FLANN." args = {'cores': self._n_jobs} if self.flann_algorithm == 'auto': if X is None or X.dim > 5: args['algorithm'] = 'linear' else: args['algorithm'] = 'kdtree_singl...

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33.571429

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def ReadStatusBit(self, bit): ' Report given status bit ' spi.SPI_write_byte(self.CS, 0x39) # Read from address 0x19 (STATUS) spi.SPI_write_byte(self.CS, 0x00) data0 = spi.SPI_read_byte() # 1st byte spi.SPI_write_byte(self.CS, 0x00) data1 = spi.SPI_read_byte()...

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44.923077

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def generate_hooked_command(cmd_name, cmd_cls, hooks): """ Returns a generated subclass of ``cmd_cls`` that runs the pre- and post-command hooks for that command before and after the ``cmd_cls.run`` method. """ def run(self, orig_run=cmd_cls.run): self.run_command_hooks('pre_hooks') ...

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36.9375

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def read_and_save_data(info_df, raw_dir, sep=";", force_raw=False, force_cellpy=False, export_cycles=False, shifted_cycles=False, export_raw=True, export_ica=False, save=True, use_cellpy_stat_file=False, p...

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41.657895

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def zero_state(self, batch_size): """ Initial state of the network """ return torch.zeros(batch_size, self.state_dim, dtype=torch.float32)

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50.666667

14

def get_unit_by_name(self, unit_name: str) -> typing.Optional['BaseUnit']: """ Gets a unit from its name Args: unit_name: unit name Returns: """ VALID_STR.validate(unit_name, 'get_unit_by_name') for unit in self.units: if unit.unit_name ...

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24.466667

18.866667

def make_structure_from_geos(geos): '''Creates a structure out of a list of geometry objects.''' model_structure=initialize_res(geos[0]) for i in range(1,len(geos)): model_structure=add_residue(model_structure, geos[i]) return model_structure

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37.285714

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def heading(self, column, option=None, **kw): """ Query or modify the heading options for the specified column. If `kw` is not given, returns a dict of the heading option values. If `option` is specified then the value for that option is returned. Otherwise, sets the options to ...

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47.347826

23.434783

def _aspect_preserving_resize(image, resize_min): """Resize images preserving the original aspect ratio. Args: image: A 3-D image `Tensor`. resize_min: A python integer or scalar `Tensor` indicating the size of the smallest side after resize. Returns: resized_image: A 3-D tensor containing the...

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32.2

22.45

def get_records(cls, ids, with_deleted=False): """Retrieve multiple records by id. :param ids: List of record IDs. :param with_deleted: If `True` then it includes deleted records. :returns: A list of :class:`Record` instances. """ with db.session.no_autoflush: ...

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42.307692

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def data(path, hours, offset=0): """ Does the metric at ``path`` have any whisper data newer than ``hours``? If ``offset`` is not None, view the ``hours`` prior to ``offset`` hours ago, instead of from right now. """ now = time.time() end = now - _to_sec(offset) # Will default to now s...

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35.416667

14.25

def _decrypt_symmetric( self, decryption_algorithm, decryption_key, cipher_text, cipher_mode=None, padding_method=None, iv_nonce=None): """ Decrypt data using symmetric decryption. Args: decryption_a...

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39.122449

20.122449

def _handle_error(self, data, params): """Handle an error response from the SABnzbd API""" error = data.get('error', 'API call failed') mode = params.get('mode') raise SabnzbdApiException(error, mode=mode)

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46.6

6.4

def _validate(self): """ Step 5 (1st flow) or Step 4 (2nd flow). Process contract for object. """ # disable methods matching before validation self._disable_patching = True # validation by Invariant.validate self._validate_base(self) # enable methods match...

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37

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def request(self, method, url, params=None, data=None, headers=None, auth=None, timeout=None, allow_redirects=False): """ Make an HTTP request. """ raise TwilioException('HttpClient is an abstract class')

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41.166667

14.5

def MAE(x1, x2=-1): """ Mean absolute error - this function accepts two series of data or directly one series with error. **Args:** * `x1` - first data series or error (1d array) **Kwargs:** * `x2` - second series (1d array) if first series was not error directly,\\ then this sho...

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24.409091

23.772727

def local_pdb_codes(data_dir=None): """ Get list of PDB codes stored in a folder (FileSystem folder hierarchy expected within data_dir). If no folder is specified, use the database_dir defined in settings.json. Parameters ---------- data_dir: str Filepath to a folder containing the PDB fol...

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35.913043

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def check_the_end_flag(self, state_key): ''' Check the end flag. If this return value is `True`, the learning is end. Args: state_key: The key of state in `self.t`. Returns: bool ''' # As a rule, the learning can not be stoppe...

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def _setup_bindings(self): """ Setup the event bindings for the widgets: Configure for _timeline Horizontal and Vertical scrolling for all widgets """ self._timeline.bind("<Configure>", self.__configure_timeline) for widget in [self, self._canvas_scroll, self._tim...

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def image_predict(self, X): """ Predicts class label for the entire image. Parameters: ----------- X: array, shape = [n_samples, n_pixels_y, n_pixels_x, n_bands] Array of training images y: array, shape = [n_samples] or [n_samples, n_pixels_y, n_p...

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def printConfig(self, type='simu'): """ print information about element :param type: comm, simu, ctrl, misc, all """ print("{s1}{s2:^22s}{s1}".format(s1="-" * 10, s2="Configuration START")) print("Element name: {en} ({cn})".format(en=self.name, cn=self.__class__.__name__)) ...

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def cli(ctx, feature_id, attribute_key, attribute_value, organism="", sequence=""): """Delete an attribute from a feature Output: A standard apollo feature dictionary ({"features": [{...}]}) """ return ctx.gi.annotations.delete_attribute(feature_id, attribute_key, attribute_value, organism=organism, s...

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def xpath_eval(node, extra_ns=None): """ Returns an XPathEvaluator, with namespace prefixes 'bpmn' for http://www.omg.org/spec/BPMN/20100524/MODEL, and additional specified ones """ namespaces = {'bpmn': BPMN_MODEL_NS} if extra_ns: namespaces.update(extra_ns) return lambda path: node...

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def update(self, list_id, webhook_id, data): """ Update the settings for an existing webhook. :param list_id: The unique id for the list :type list_id: :py:class:`str` :param webhook_id: The unique id for the webhook :type webhook_id: :py:class:`str` """ ...

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def get_python_path(venv_path): """ Get given virtual environment's `python` program path. :param venv_path: Virtual environment directory path. :return: `python` program path. """ # Get `bin` directory path bin_path = get_bin_path(venv_path) # Get `python` program path program_pa...

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27.428571

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def set_mag_offsets_encode(self, target_system, target_component, mag_ofs_x, mag_ofs_y, mag_ofs_z): ''' Deprecated. Use MAV_CMD_PREFLIGHT_SET_SENSOR_OFFSETS instead. Set the magnetometer offsets target_system : System ID (uint8_t) ...

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def _unpack(self, tar_file, directory): """ Unpacks tar archive to selected directory """ self.log.info("Unpacking %s tar file to %s directory" % (tar_file, directory)) with tarfile.open(tar_file, 'r') as tar: tar.extractall(path=directory) self.log.i...

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33.5

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def delayed_redraw(self): """Handle delayed redrawing of the canvas.""" # This is the optimized redraw method with self._defer_lock: # pick up the lowest necessary level of redrawing whence = self._defer_whence self._defer_whence = self._defer_whence_reset ...

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def _encode(data): """Encode the given data using base-64 :param data: :return: base-64 encoded string """ if not isinstance(data, bytes_types): data = six.b(str(data)) return base64.b64encode(data).decode("utf-8")

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def set_document(request, doc_id, body, errors): """ Simple handler for set document :param request: aiohttp.web.Request :param errors: aiohttp_apiset.exceptions.ValidationError optional param for manual raise validation errors :return: dict """ if doc_id in DB: errors...

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27.333333

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def update_session(request, session_to_set, hproPk): """Update the session with users-realted values""" for key, value in session_to_set.items(): request.session['plugit_' + str(hproPk) + '_' + key] = value

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43.8

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def _get_log_lines(self, n=300): """Returns a list with the last ``n`` lines of the nextflow log file Parameters ---------- n : int Number of last lines from the log file Returns ------- list List of strings with the nextflow log ...

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23.277778

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def get_content_type(self): """ Returns the ``Content-Type`` header to be used for this request. """ mime_type, encoding = mimetypes.guess_type(self.filepath) if encoding == "gzip": return "application/gzip" elif encoding is not None: return "appli...

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37

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def _explore_storage(self): """Generator of all files contained in media storage.""" path = '' dirs = [path] while dirs: path = dirs.pop() subdirs, files = self.media_storage.listdir(path) for media_filename in files: yield os.path.join...

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40.9

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def _compute_baseline_survival(self): """ Importantly, this agrees with what the KaplanMeierFitter produces. Ex: Example ------- >>> from lifelines.datasets import load_rossi >>> from lifelines import CoxPHFitter, KaplanMeierFitter >>> rossi = load_rossi() ...

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def rectangle(self, x0, y0, x1, y1): """Draw a rectangle""" x0, y0, x1, y1 = self.rect_helper(x0, y0, x1, y1) self.polyline([[x0, y0], [x1, y0], [x1, y1], [x0, y1], [x0, y0]])

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49

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def dlogpdf_df_dtheta(self, f, y, Y_metadata=None): """ TODO: Doc strings """ if self.size > 0: if self.not_block_really: raise NotImplementedError("Need to make a decorator for this!") if isinstance(self.gp_link, link_functions.Identity): ...

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def start_update(self, layer_id): """ A shortcut to create a new version and start importing it. Effectively the same as :py:meth:`koordinates.layers.LayerManager.create_draft` followed by :py:meth:`koordinates.layers.LayerManager.start_import`. """ target_url = self.client.get_u...

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60.375

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def parse_URL(cls, url, timeout=None, resolve=True, required=False, unresolved_value=DEFAULT_SUBSTITUTION): """Parse URL :param url: url to parse :type url: basestring :param resolve: if true, resolve substitutions :type resolve: boolean :param unresolved_value: assigned...

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def process_pybel_graph(graph): """Return a PybelProcessor by processing a PyBEL graph. Parameters ---------- graph : pybel.struct.BELGraph A PyBEL graph to process Returns ------- bp : PybelProcessor A PybelProcessor object which contains INDRA Statements in bp.sta...

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27.619048

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def Draw(self, dc): ''' Draw the tree map on the device context. ''' self.hot_map = [] dc.BeginDrawing() brush = wx.Brush( self.BackgroundColour ) dc.SetBackground( brush ) dc.Clear() if self.model: self.max_depth_seen = 0 font = self.Font...

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36.4

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def context_processor(self, fn): """ Like :meth:`flask.Blueprint.context_processor` but for a bundle. This function is only executed for requests handled by a bundle. """ self._defer(lambda bp: bp.context_processor(fn)) return fn

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def on_exit(self, info): """ Handles the user attempting to exit Godot. """ if self.prompt_on_exit:# and (not is_ok): retval = confirm(parent = info.ui.control, message = "Exit Godot?", title = "Confirm exit", ...

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def sh2(cmd): """Execute command in a subshell, return stdout. Stderr is unbuffered from the subshell.x""" p = Popen(cmd, stdout=PIPE, shell=True, env=sub_environment()) out = p.communicate()[0] retcode = p.returncode if retcode: raise CalledProcessError(retcode, cmd) else: ...

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def _netapp_login(self): """ Login to our netapp filer """ self.server = NaServer(self.ip, 1, 3) self.server.set_transport_type('HTTPS') self.server.set_style('LOGIN') self.server.set_admin_user(self.netapp_user, self.netapp_password)

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def _parse_from_import_names(self, is_future_import): """Parse the 'y' part in a 'from x import y' statement.""" if self.current.value == "(": self.consume(tk.OP) expected_end_kinds = (tk.OP,) else: expected_end_kinds = (tk.NEWLINE, tk.ENDMARKER) while...

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