kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def to_datetime(jdc): '''Return a datetime for the input floating point Julian Day Count''' year, month, day = gregorian.from_jd(jdc) # in jdc: 0.0 = noon, 0.5 = midnight # the 0.5 changes it to 0.0 = midnight, 0.5 = noon frac = (jdc + 0.5) % 1 hours = int(24 * frac) mfrac = frac * 24 - h...	[ "def", "to_datetime", "(", "jdc", ")", ":", "year", ",", "month", ",", "day", "=", "gregorian", ".", "from_jd", "(", "jdc", ")", "# in jdc: 0.0 = noon, 0.5 = midnight", "# the 0.5 changes it to 0.0 = midnight, 0.5 = noon", "frac", "=", "(", "jdc", "+", "0.5", ")",...	28.181818	21.818182
def mesh_nmasked(self): """ A 2D (masked) array of the number of masked pixels in each mesh. Only meshes included in the background estimation are included. The array is masked only if meshes were excluded. """ return self._make_2d_array( np.ma.count_masked(s...	[ "def", "mesh_nmasked", "(", "self", ")", ":", "return", "self", ".", "_make_2d_array", "(", "np", ".", "ma", ".", "count_masked", "(", "self", ".", "_data_sigclip", ",", "axis", "=", "1", ")", ")" ]	37.666667	17.888889
def delete_variant_by_id(cls, variant_id, **kwargs): """Delete Variant Delete an instance of Variant by its ID. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> thread = api.delete_variant_by_id(variant_id,...	[ "def", "delete_variant_by_id", "(", "cls", ",", "variant_id", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'_return_http_data_only'", "]", "=", "True", "if", "kwargs", ".", "get", "(", "'async'", ")", ":", "return", "cls", ".", "_delete_variant_by_id_w...	40.952381	19.619048
def NewDefaultAgency(self, kwargs): """Create a new Agency object and make it the default agency for this Schedule""" agency = self._gtfs_factory.Agency(kwargs) if not agency.agency_id: agency.agency_id = util.FindUniqueId(self._agencies) self._default_agency = agency self.SetDefaultAgency...	[ "def", "NewDefaultAgency", "(", "self", ",", "", "", "kwargs", ")", ":", "agency", "=", "self", ".", "_gtfs_factory", ".", "Agency", "(", "", "", "kwargs", ")", "if", "not", "agency", ".", "agency_id", ":", "agency", ".", "agency_id", "=", "util", ...	48.25	13.875
def reply_to(self, message, text, kwargs): """ Convenience function for `send_message(message.chat.id, text, reply_to_message_id=message.message_id, kwargs)` """ return self.send_message(message.chat.id, text, reply_to_message_id=message.message_id, **kwargs)	[ "def", "reply_to", "(", "self", ",", "message", ",", "text", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "send_message", "(", "message", ".", "chat", ".", "id", ",", "text", ",", "reply_to_message_id", "=", "message", ".", "message_id", "...	58.2	29.8
def _set(self, value): """Override setter, allow clearing cursor""" super(AttachmentsField, self)._set(value) self._cursor = None	[ "def", "_set", "(", "self", ",", "value", ")", ":", "super", "(", "AttachmentsField", ",", "self", ")", ".", "_set", "(", "value", ")", "self", ".", "_cursor", "=", "None" ]	37.5	10
def relative_datetime(self): """Return human-readable relative time string.""" now = datetime.now(timezone.utc) tense = "from now" if self.created_at > now else "ago" return "{0} {1}".format(humanize.naturaldelta(now - self.created_at), tense)	[ "def", "relative_datetime", "(", "self", ")", ":", "now", "=", "datetime", ".", "now", "(", "timezone", ".", "utc", ")", "tense", "=", "\"from now\"", "if", "self", ".", "created_at", ">", "now", "else", "\"ago\"", "return", "\"{0} {1}\"", ".", "format", ...	54.2	15.6
def get_extra_radiation(datetime_or_doy, solar_constant=1366.1, method='spencer', epoch_year=2014, **kwargs): """ Determine extraterrestrial radiation from day of year. Parameters ---------- datetime_or_doy : numeric, array, date, datetime, Timestamp, DatetimeIndex D...	[ "def", "get_extra_radiation", "(", "datetime_or_doy", ",", "solar_constant", "=", "1366.1", ",", "method", "=", "'spencer'", ",", "epoch_year", "=", "2014", ",", "", "", "kwargs", ")", ":", "to_doy", ",", "to_datetimeindex", ",", "to_output", "=", "_handle_e...	36.631579	24.578947
def perr(self, args, kwargs): """ Console to STERR """ kwargs['file'] = self.err self.print(args, **kwargs) sys.stderr.flush()	[ "def", "perr", "(", "self", ",", "", "args", ",", "", "", "kwargs", ")", ":", "kwargs", "[", "'file'", "]", "=", "self", ".", "err", "self", ".", "print", "(", "", "args", ",", "", "", "kwargs", ")", "sys", ".", "stderr", ".", "flush", ...	31.6	6.8
def collect_fields( ctx, # type: ExecutionContext runtime_type, # type: GraphQLObjectType selection_set, # type: SelectionSet fields, # type: DefaultOrderedDict prev_fragment_names, # type: Set[str] ): # type: (...) -> DefaultOrderedDict """ Given a selectionSet, adds all of the fie...	[ "def", "collect_fields", "(", "ctx", ",", "# type: ExecutionContext", "runtime_type", ",", "# type: GraphQLObjectType", "selection_set", ",", "# type: SelectionSet", "fields", ",", "# type: DefaultOrderedDict", "prev_fragment_names", ",", "# type: Set[str]", ")", ":", "# type...	34.067797	20.338983
def _add_initial_value(self, data_id, value, initial_dist=0.0, fringe=None, check_cutoff=None, no_call=None): """ Add initial values updating workflow, seen, and fringe. :param fringe: Heapq of closest available nodes. :type fringe: list[(float \| i...	[ "def", "_add_initial_value", "(", "self", ",", "data_id", ",", "value", ",", "initial_dist", "=", "0.0", ",", "fringe", "=", "None", ",", "check_cutoff", "=", "None", ",", "no_call", "=", "None", ")", ":", "# Namespace shortcuts for speed.", "nodes", ",", "s...	34.307692	25.557692
def _remote_add(self): """Execute git remote add.""" self.repo.create_remote( 'origin', 'git@github.com:{username}/{repo}.git'.format( username=self.metadata.username, repo=self.metadata.name))	[ "def", "_remote_add", "(", "self", ")", ":", "self", ".", "repo", ".", "create_remote", "(", "'origin'", ",", "'git@github.com:{username}/{repo}.git'", ".", "format", "(", "username", "=", "self", ".", "metadata", ".", "username", ",", "repo", "=", "self", "...	37	10.285714
def to_docstring(kwargs, lpad=''): """Reconstruct a docstring from keyword argument info. Basically reverses :func:`extract_kwargs`. Parameters ---------- kwargs: list Output from the extract_kwargs function lpad: str, optional Padding string (from the left). Returns -...	[ "def", "to_docstring", "(", "kwargs", ",", "lpad", "=", "''", ")", ":", "buf", "=", "io", ".", "StringIO", "(", ")", "for", "name", ",", "type_", ",", "description", "in", "kwargs", ":", "buf", ".", "write", "(", "'%s%s: %s\\n'", "%", "(", "lpad", ...	25.972973	20.324324
def _merge(dts): """ merge multiple samples in one matrix """ df = pd.concat(dts) ma = df.pivot(index='isomir', columns='sample', values='counts') ma_mirna = ma ma = ma.fillna(0) ma_mirna['mirna'] = [m.split(":")[0] for m in ma.index.values] ma_mirna = ma_mirna.groupby(['mirna']).su...	[ "def", "_merge", "(", "dts", ")", ":", "df", "=", "pd", ".", "concat", "(", "dts", ")", "ma", "=", "df", ".", "pivot", "(", "index", "=", "'isomir'", ",", "columns", "=", "'sample'", ",", "values", "=", "'counts'", ")", "ma_mirna", "=", "ma", "ma...	28.384615	16.076923
def shell(): "Open a shell" from gui.tools.debug import Shell shell = Shell() shell.show() return shell	[ "def", "shell", "(", ")", ":", "from", "gui", ".", "tools", ".", "debug", "import", "Shell", "shell", "=", "Shell", "(", ")", "shell", ".", "show", "(", ")", "return", "shell" ]	20.333333	20
def frame_indexing(frame, multi_index, level_i, indexing_type='label'): """Index dataframe based on one level of MultiIndex. Arguments --------- frame : pandas.DataFrame The datafrme to select records from. multi_index : pandas.MultiIndex A pandas multiindex were one fo the levels i...	[ "def", "frame_indexing", "(", "frame", ",", "multi_index", ",", "level_i", ",", "indexing_type", "=", "'label'", ")", ":", "if", "indexing_type", "==", "\"label\"", ":", "data", "=", "frame", ".", "loc", "[", "multi_index", ".", "get_level_values", "(", "lev...	32.392857	20.285714
def transmit(self, payload, **kwargs): """ Transmit content metadata items to the integrated channel. """ items_to_create, items_to_update, items_to_delete, transmission_map = self._partition_items(payload) self._prepare_items_for_delete(items_to_delete) prepared_items = ...	[ "def", "transmit", "(", "self", ",", "payload", ",", "", "", "kwargs", ")", ":", "items_to_create", ",", "items_to_update", ",", "items_to_delete", ",", "transmission_map", "=", "self", ".", "_partition_items", "(", "payload", ")", "self", ".", "_prepare_ite...	52.886364	27.431818
def distance(self, physical_qubit1, physical_qubit2): """Returns the undirected distance between physical_qubit1 and physical_qubit2. Args: physical_qubit1 (int): A physical qubit physical_qubit2 (int): Another physical qubit Returns: int: The undirected dis...	[ "def", "distance", "(", "self", ",", "physical_qubit1", ",", "physical_qubit2", ")", ":", "if", "physical_qubit1", "not", "in", "self", ".", "physical_qubits", ":", "raise", "CouplingError", "(", "\"%s not in coupling graph\"", "%", "(", "physical_qubit1", ",", ")...	41.55	20.55
async def vsetup(self, author): """Creates the voice client Args: author (discord.Member): The user that the voice ui will seek """ if self.vready: logger.warning("Attempt to init voice when already initialised") return if self.state != 'sta...	[ "async", "def", "vsetup", "(", "self", ",", "author", ")", ":", "if", "self", ".", "vready", ":", "logger", ".", "warning", "(", "\"Attempt to init voice when already initialised\"", ")", "return", "if", "self", ".", "state", "!=", "'starting'", ":", "logger",...	38.733333	23.8
def psffunc(self, args, kwargs): """Calculates a linescan psf""" if self.polychromatic: func = psfcalc.calculate_polychrome_linescan_psf else: func = psfcalc.calculate_linescan_psf return func(args, **kwargs)	[ "def", "psffunc", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "self", ".", "polychromatic", ":", "func", "=", "psfcalc", ".", "calculate_polychrome_linescan_psf", "else", ":", "func", "=", "psfcalc", ".", "calculate_linescan_psf",...	37.428571	10.714286
def RobotFactory(path, parent=None): '''Return an instance of SuiteFile, ResourceFile, SuiteFolder Exactly which is returned depends on whether it's a file or folder, and if a file, the contents of the file. If there is a testcase table, this will return an instance of SuiteFile, otherwise it will ...	[ "def", "RobotFactory", "(", "path", ",", "parent", "=", "None", ")", ":", "if", "os", ".", "path", ".", "isdir", "(", "path", ")", ":", "return", "SuiteFolder", "(", "path", ",", "parent", ")", "else", ":", "rf", "=", "RobotFile", "(", "path", ",",...	30.181818	20.818182
def total(self, xbin1=1, xbin2=-2): """ Return the total yield and its associated statistical and systematic uncertainties. """ integral, stat_error = self.hist.integral( xbin1=xbin1, xbin2=xbin2, error=True) # sum systematics in quadrature ups = [0] ...	[ "def", "total", "(", "self", ",", "xbin1", "=", "1", ",", "xbin2", "=", "-", "2", ")", ":", "integral", ",", "stat_error", "=", "self", ".", "hist", ".", "integral", "(", "xbin1", "=", "xbin1", ",", "xbin2", "=", "xbin2", ",", "error", "=", "True...	36.416667	12.916667
def find_unique_repos(where): """ Search for repositories and deduplicate based on ``repo.fpath`` Args: where (str): path to search from Yields: Repository subclass """ repos = Dict() path_uuids = Dict() log.debug("find_unique_repos(%r)" % where) for repo in find_fi...	[ "def", "find_unique_repos", "(", "where", ")", ":", "repos", "=", "Dict", "(", ")", "path_uuids", "=", "Dict", "(", ")", "log", ".", "debug", "(", "\"find_unique_repos(%r)\"", "%", "where", ")", "for", "repo", "in", "find_find_repos", "(", "where", ")", ...	27.464286	16.321429
def getContinuousSet(self, id_): """ Returns the ContinuousSet with the specified id, or raises a ContinuousSetNotFoundException otherwise. """ if id_ not in self._continuousSetIdMap: raise exceptions.ContinuousSetNotFoundException(id_) return self._continuous...	[ "def", "getContinuousSet", "(", "self", ",", "id_", ")", ":", "if", "id_", "not", "in", "self", ".", "_continuousSetIdMap", ":", "raise", "exceptions", ".", "ContinuousSetNotFoundException", "(", "id_", ")", "return", "self", ".", "_continuousSetIdMap", "[", "...	40.75	10
def find_parent_split(node, orientation): """ Find the first parent split relative to the given node according to the desired orientation """ if (node and node.orientation == orientation and len(node.children) > 1): return node if not node or node.type == "workspace": r...	[ "def", "find_parent_split", "(", "node", ",", "orientation", ")", ":", "if", "(", "node", "and", "node", ".", "orientation", "==", "orientation", "and", "len", "(", "node", ".", "children", ")", ">", "1", ")", ":", "return", "node", "if", "not", "node"...	26.642857	15.071429
def _compute_heating_rates(self): '''Compute energy flux convergences to get heating rates in :math:`W/m^2`.''' self._compute_flux() self.heating_rate['Ts'] = -self._flux # Modify only the lowest model level self.heating_rate['Tatm'][..., -1, np.newaxis] = self._flux	[ "def", "_compute_heating_rates", "(", "self", ")", ":", "self", ".", "_compute_flux", "(", ")", "self", ".", "heating_rate", "[", "'Ts'", "]", "=", "-", "self", ".", "_flux", "# Modify only the lowest model level", "self", ".", "heating_rate", "[", "'Tatm'", "...	50.333333	16.666667
def HashBuffer(self, buf): """Updates underlying hashers with a given buffer. Args: buf: A byte buffer (string object) that is going to be fed to the hashers. """ for hasher in itervalues(self._hashers): hasher.update(buf) if self._progress: self._progress() self._bytes_r...	[ "def", "HashBuffer", "(", "self", ",", "buf", ")", ":", "for", "hasher", "in", "itervalues", "(", "self", ".", "_hashers", ")", ":", "hasher", ".", "update", "(", "buf", ")", "if", "self", ".", "_progress", ":", "self", ".", "_progress", "(", ")", ...	27	18.75
def b58decode(v): '''Decode a Base58 encoded string''' if not isinstance(v, str): v = v.decode('ascii') origlen = len(v) v = v.lstrip(alphabet[0]) newlen = len(v) acc = b58decode_int(v) result = [] while acc > 0: acc, mod = divmod(acc, 256) result.append(mod) ...	[ "def", "b58decode", "(", "v", ")", ":", "if", "not", "isinstance", "(", "v", ",", "str", ")", ":", "v", "=", "v", ".", "decode", "(", "'ascii'", ")", "origlen", "=", "len", "(", "v", ")", "v", "=", "v", ".", "lstrip", "(", "alphabet", "[", "0...	20.444444	22.222222
def select(self, column_names, kwargs): ''' Select the provided column names from the model, do not return an entity, do not involve the rom session, just get the raw and/or processed column data from Redis. Keyword-only arguments: include_pk=False - whether ...	[ "def", "select", "(", "self", ",", "", "column_names", ",", "", "*", "kwargs", ")", ":", "include_pk", "=", "kwargs", ".", "pop", "(", "'include_pk'", ",", "False", ")", "decode", "=", "kwargs", ".", "pop", "(", "'decode'", ",", "True", ")", "ff", ...	43.621622	27.432432
def makeGLMModel(model, coefs, threshold=.5): """ Create a custom GLM model using the given coefficients. Needs to be passed source model trained on the dataset to extract the dataset information from. :param model: source model, used for extracting dataset information :param c...	[ "def", "makeGLMModel", "(", "model", ",", "coefs", ",", "threshold", "=", ".5", ")", ":", "model_json", "=", "h2o", ".", "api", "(", "\"POST /3/MakeGLMModel\"", ",", "data", "=", "{", "\"model\"", ":", "model", ".", "_model_json", "[", "\"model_id\"", "]",...	43.35	21.35
def find_executable(name: str, flags=os.X_OK) -> List[str]: r"""Finds executable `name`. Similar to Unix ``which`` command. Returns list of zero or more full paths to `name`. """ result = [] extensions = [x for x in os.environ.get("PATHEXT", "").split(os.pathsep) if x] path = os.environ.ge...	[ "def", "find_executable", "(", "name", ":", "str", ",", "flags", "=", "os", ".", "X_OK", ")", "->", "List", "[", "str", "]", ":", "result", "=", "[", "]", "extensions", "=", "[", "x", "for", "x", "in", "os", ".", "environ", ".", "get", "(", "\"...	34.238095	14.666667
def list(self, **params): """ Retrieve all orders Returns all orders available to the user according to the parameters provided :calls: ``get /orders`` :param dict params: (optional) Search options. :return: List of dictionaries that support attriubte-style access, whic...	[ "def", "list", "(", "self", ",", "", "", "params", ")", ":", "_", ",", "_", ",", "orders", "=", "self", ".", "http_client", ".", "get", "(", "\"/orders\"", ",", "params", "=", "params", ")", "return", "orders" ]	33.285714	25.428571
def require(f): ''' The @require decorator, usable in an immutable class (see immutable), specifies that the following function is actually a validation check on the immutable class. These functions will appear as static members of the class and get called automatically when the relevant data change...	[ "def", "require", "(", "f", ")", ":", "(", "args", ",", "varargs", ",", "kwargs", ",", "dflts", ")", "=", "getargspec_py27like", "(", "f", ")", "if", "varargs", "is", "not", "None", "or", "kwargs", "is", "not", "None", "or", "dflts", ":", "raise", ...	49.222222	26.777778
def render_image(self, rgbobj, dst_x, dst_y): """Render the image represented by (rgbobj) at dst_x, dst_y in the pixel space. * internal method-- do not use * """ self.logger.debug("redraw surface=%s" % (self.surface)) if self.surface is None: return ...	[ "def", "render_image", "(", "self", ",", "rgbobj", ",", "dst_x", ",", "dst_y", ")", ":", "self", ".", "logger", ".", "debug", "(", "\"redraw surface=%s\"", "%", "(", "self", ".", "surface", ")", ")", "if", "self", ".", "surface", "is", "None", ":", "...	37.675676	15.675676
def prepare_logged(x, y): """ Transform `x` and `y` to a log scale while dealing with zeros. This function scales `x` and `y` such that the points that are zero in one array are set to the min of the other array. When plotting expression data, frequently one sample will have reads in a particu...	[ "def", "prepare_logged", "(", "x", ",", "y", ")", ":", "xi", "=", "np", ".", "log2", "(", "x", ")", "yi", "=", "np", ".", "log2", "(", "y", ")", "xv", "=", "np", ".", "isfinite", "(", "xi", ")", "yv", "=", "np", ".", "isfinite", "(", "yi", ...	30.5	24
def setErrorHandler(self,f,arg): """Register an error handler that will be called back as f(arg,msg,severity,reserved). @reserved is currently always None.""" libxml2mod.xmlParserCtxtSetErrorHandler(self._o,f,arg)	[ "def", "setErrorHandler", "(", "self", ",", "f", ",", "arg", ")", ":", "libxml2mod", ".", "xmlParserCtxtSetErrorHandler", "(", "self", ".", "_o", ",", "f", ",", "arg", ")" ]	41.166667	11.666667
def hex2rgb(h): """ Convert hex colors to RGB tuples Parameters ---------- h : str String hex color value >>> hex2rgb("#ff0033") '255,0,51' """ if not h.startswith('#') or len(h) != 7: raise ValueError("Does not look like a hex color: '{0}'".format(h)) return ',...	[ "def", "hex2rgb", "(", "h", ")", ":", "if", "not", "h", ".", "startswith", "(", "'#'", ")", "or", "len", "(", "h", ")", "!=", "7", ":", "raise", "ValueError", "(", "\"Does not look like a hex color: '{0}'\"", ".", "format", "(", "h", ")", ")", "return"...	21.157895	19.473684
def fasttagcount(sam, out, genemap, positional, minevidence, cb_histogram, cb_cutoff, subsample, parse_tags, gene_tags, umi_matrix): ''' Count up evidence for tagged molecules, this implementation assumes the alignment file is coordinate sorted ''' from pysam import AlignmentFile ...	[ "def", "fasttagcount", "(", "sam", ",", "out", ",", "genemap", ",", "positional", ",", "minevidence", ",", "cb_histogram", ",", "cb_cutoff", ",", "subsample", ",", "parse_tags", ",", "gene_tags", ",", "umi_matrix", ")", ":", "from", "pysam", "import", "Align...	35.081448	18.918552
def what_task(self, token_id, presented_pronunciation, index, phonemes, phonemes_probability, warn=True, default=True): """Provide the prediction of the what task. This function is used to predict the probability of a given phoneme being reported at a given index for a given t...	[ "def", "what_task", "(", "self", ",", "token_id", ",", "presented_pronunciation", ",", "index", ",", "phonemes", ",", "phonemes_probability", ",", "warn", "=", "True", ",", "default", "=", "True", ")", ":", "if", "phonemes_probability", "is", "not", "None", ...	52.595745	33.021277
def fragment_fromstring(html, create_parent=False, guess_charset=False, parser=None): """Parses a single HTML element; it is an error if there is more than one element, or if anything but whitespace precedes or follows the element. If create_parent is true (or is a tag name) the...	[ "def", "fragment_fromstring", "(", "html", ",", "create_parent", "=", "False", ",", "guess_charset", "=", "False", ",", "parser", "=", "None", ")", ":", "if", "not", "isinstance", "(", "html", ",", "_strings", ")", ":", "raise", "TypeError", "(", "'string ...	36.102564	16.666667
def get_bucket_type_props(self, bucket_type): """ Fetch bucket-type properties """ self._check_bucket_types(bucket_type) msg_code = riak.pb.messages.MSG_CODE_GET_BUCKET_TYPE_REQ codec = self._get_codec(msg_code) msg = codec.encode_get_bucket_type_props(bucket_type...	[ "def", "get_bucket_type_props", "(", "self", ",", "bucket_type", ")", ":", "self", ".", "_check_bucket_types", "(", "bucket_type", ")", "msg_code", "=", "riak", ".", "pb", ".", "messages", ".", "MSG_CODE_GET_BUCKET_TYPE_REQ", "codec", "=", "self", ".", "_get_cod...	41.7	8.3
def main(*argv): """ main driver of program """ try: # Inputs # adminUsername = argv[0] adminPassword = argv[1] siteURL = argv[2] groupTitle = argv[3] groupTags = argv[4] description = argv[5] access = argv[6] # Logic #...	[ "def", "main", "(", "*", "argv", ")", ":", "try", ":", "# Inputs", "#", "adminUsername", "=", "argv", "[", "0", "]", "adminPassword", "=", "argv", "[", "1", "]", "siteURL", "=", "argv", "[", "2", "]", "groupTitle", "=", "argv", "[", "3", "]", "...	41.388889	17.759259
def encode(self, envelope, session, encoding=None, **kwargs): """ :meth:`.WMessengerOnionCoderLayerProto.encode` method implementation. :param envelope: original envelope :param session: original session :param encoding: encoding to use (default is 'utf-8') :param kwargs: additional arguments :return: WMe...	[ "def", "encode", "(", "self", ",", "envelope", ",", "session", ",", "encoding", "=", "None", ",", "", "", "kwargs", ")", ":", "message", "=", "envelope", ".", "message", "(", ")", "message", "=", "message", ".", "encode", "(", ")", "if", "encoding"...	38.538462	15.307692
def run(self): """ Run the database seeds. """ self.factory.register(User, self.users_factory) self.factory(User, 50).create()	[ "def", "run", "(", "self", ")", ":", "self", ".", "factory", ".", "register", "(", "User", ",", "self", ".", "users_factory", ")", "self", ".", "factory", "(", "User", ",", "50", ")", ".", "create", "(", ")" ]	23	13
def load(data, udf, data_dir, overwrite): """Load Ibis test data and build/upload UDFs""" con = make_ibis_client(ENV) # validate our environment before performing possibly expensive operations if not can_write_to_hdfs(con): raise IbisError('Failed to write to HDFS; check your settings') if ...	[ "def", "load", "(", "data", ",", "udf", ",", "data_dir", ",", "overwrite", ")", ":", "con", "=", "make_ibis_client", "(", "ENV", ")", "# validate our environment before performing possibly expensive operations", "if", "not", "can_write_to_hdfs", "(", "con", ")", ":"...	37.580645	19.612903
def random(self, namespace=0): """ Returns query string for random page """ query = self.LIST.substitute( WIKI=self.uri, ENDPOINT=self.endpoint, LIST='random') query += "&rnlimit=1&rnnamespace=%d" % namespace emoji = [ u'\U...	[ "def", "random", "(", "self", ",", "namespace", "=", "0", ")", ":", "query", "=", "self", ".", "LIST", ".", "substitute", "(", "WIKI", "=", "self", ".", "uri", ",", "ENDPOINT", "=", "self", ".", "endpoint", ",", "LIST", "=", "'random'", ")", "query...	28.678571	14.107143
def show_hydrophobic(self): """Visualizes hydrophobic contacts.""" hydroph = self.plcomplex.hydrophobic_contacts if not len(hydroph.bs_ids) == 0: self.select_by_ids('Hydrophobic-P', hydroph.bs_ids, restrict=self.protname) self.select_by_ids('Hydrophobic-L', hydroph.lig_id...	[ "def", "show_hydrophobic", "(", "self", ")", ":", "hydroph", "=", "self", ".", "plcomplex", ".", "hydrophobic_contacts", "if", "not", "len", "(", "hydroph", ".", "bs_ids", ")", "==", "0", ":", "self", ".", "select_by_ids", "(", "'Hydrophobic-P'", ",", "hyd...	51.0625	20.8125
def increment(handler, increment, item_id, counter_name): """Increment a counter attribute atomically""" data = {'operation': 'increment_counter', 'id': item_id, 'counter_name': counter_name, 'increment': increment} handler.invoke(data)	[ "def", "increment", "(", "handler", ",", "increment", ",", "item_id", ",", "counter_name", ")", ":", "data", "=", "{", "'operation'", ":", "'increment_counter'", ",", "'id'", ":", "item_id", ",", "'counter_name'", ":", "counter_name", ",", "'increment'", ":", ...	39.714286	8.285714
def exchange_declare(self, exchange, type, durable, auto_delete): """Declare an named exchange.""" return self.channel.exchange_declare(exchange=exchange, type=type, durable=durable, ...	[ "def", "exchange_declare", "(", "self", ",", "exchange", ",", "type", ",", "durable", ",", "auto_delete", ")", ":", "return", "self", ".", "channel", ".", "exchange_declare", "(", "exchange", "=", "exchange", ",", "type", "=", "type", ",", "durable", "=", ...	58.833333	18.833333
def _set_permissions(zip_file_info, extracted_path): """ Sets permissions on the extracted file by reading the ``external_attr`` property of given file info. Parameters ---------- zip_file_info : zipfile.ZipInfo Object containing information about a file within a zip archive extracted_...	[ "def", "_set_permissions", "(", "zip_file_info", ",", "extracted_path", ")", ":", "# Permission information is stored in first two bytes.", "permission", "=", "zip_file_info", ".", "external_attr", ">>", "16", "if", "not", "permission", ":", "# Zips created on certain Windows...	37.409091	25.590909
def delete_client(client_id, preserve_cache): """Delete all objects related to client @param client_id: ID of client user @param preserve_cache: Boolean, whether to delete the chrome profile folder or not """ if client_id in drivers: drivers.pop(client_id).quit() try: ...	[ "def", "delete_client", "(", "client_id", ",", "preserve_cache", ")", ":", "if", "client_id", "in", "drivers", ":", "drivers", ".", "pop", "(", "client_id", ")", ".", "quit", "(", ")", "try", ":", "timers", "[", "client_id", "]", ".", "stop", "(", ")",...	30.578947	13.736842
def get_access_tokens(self, authorization_code): """From the authorization code, get the "access token" and the "refresh token" from Box. Args: authorization_code (str). Authorisation code emitted by Box at the url provided by the function :func:`get_authorization_url`. Returns: ...	[ "def", "get_access_tokens", "(", "self", ",", "authorization_code", ")", ":", "response", "=", "self", ".", "box_request", ".", "get_access_token", "(", "authorization_code", ")", "try", ":", "att", "=", "response", ".", "json", "(", ")", "except", "Exception"...	35.923077	25.884615
def login_required_with_ajax(function=None, redirect_field_name=REDIRECT_FIELD_NAME): """ Decorator for views that checks that the user is logged in, redirecting to the log-in page if necessary, but returns a special response for ajax requests. See :meth:`eulcommon.djangoextras.auth.decorators.user...	[ "def", "login_required_with_ajax", "(", "function", "=", "None", ",", "redirect_field_name", "=", "REDIRECT_FIELD_NAME", ")", ":", "# NOTE: currently only this format works: @login_required_with_ajax()", "# But this format errors: @login_required_with_ajax", "if", "function", "is", ...	38.578947	23.315789
def load_data(self, filename, args, *kwargs): """ load data from text file. :param filename: name of file to read :type filename: str :returns: data read from file using :func:`numpy.genfromtxt` :rtype: dict :raises: :exc:`~simkit.core.exceptions.UnnamedDataErr...	[ "def", "load_data", "(", "self", ",", "filename", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "# header keys", "header_param", "=", "self", ".", "parameters", ".", "get", "(", "'header'", ")", "# default is None", "# data keys", "data_param", "=", ...	48.023256	19.883721
def list_sessions(self, updated_since=None, max_results=100, skip=0, **kwargs): """List session IDs. List the Session IDs with pending messages in the queue where the state of the session has been updated since the timestamp provided. If no timestamp is provided, all will be returned. I...	[ "def", "list_sessions", "(", "self", ",", "updated_since", "=", "None", ",", "max_results", "=", "100", ",", "skip", "=", "0", ",", "", "", "kwargs", ")", ":", "if", "self", ".", "entity", "and", "not", "self", ".", "requires_session", ":", "raise", ...	49.135135	27.540541
def search_definition(self, module, keyword, arg): """Search for a defintion with `keyword` `name` Search the module and its submodules.""" r = module.search_one(keyword, arg) if r is not None: return r for i in module.search('include'): modulename = i.arg...	[ "def", "search_definition", "(", "self", ",", "module", ",", "keyword", ",", "arg", ")", ":", "r", "=", "module", ".", "search_one", "(", "keyword", ",", "arg", ")", "if", "r", "is", "not", "None", ":", "return", "r", "for", "i", "in", "module", "....	37.5	9.571429
def search(title=None, artist=None, artist_id=None, combined=None, description=None, style=None, mood=None, results=None, start=None, max_tempo=None, min_tempo=None, max_duration=None, min_duration=None, max_loudness=None, min_loudness=None, artist_max_familiarity=None, artist_min_famil...	[ "def", "search", "(", "title", "=", "None", ",", "artist", "=", "None", ",", "artist_id", "=", "None", ",", "combined", "=", "None", ",", "description", "=", "None", ",", "style", "=", "None", ",", "mood", "=", "None", ",", "results", "=", "None", ...	63.855556	36.133333
def p_delays_intnumber(self, p): 'delays : DELAY intnumber' p[0] = DelayStatement( IntConst(p[2], lineno=p.lineno(1)), lineno=p.lineno(1)) p.set_lineno(0, p.lineno(1))	[ "def", "p_delays_intnumber", "(", "self", ",", "p", ")", ":", "p", "[", "0", "]", "=", "DelayStatement", "(", "IntConst", "(", "p", "[", "2", "]", ",", "lineno", "=", "p", ".", "lineno", "(", "1", ")", ")", ",", "lineno", "=", "p", ".", "lineno...	39.8	11
async def outlook(self) -> dict: """Get allergen outlook.""" try: return await self._request( 'get', 'https://www.pollen.com/api/forecast/outlook') except RequestError as err: if '404' in str(err): raise InvalidZipError('No data returned fo...	[ "async", "def", "outlook", "(", "self", ")", "->", "dict", ":", "try", ":", "return", "await", "self", ".", "_request", "(", "'get'", ",", "'https://www.pollen.com/api/forecast/outlook'", ")", "except", "RequestError", "as", "err", ":", "if", "'404'", "in", ...	38.1	13.2
def _get_bounds(self, ib, dimension): """ib == 0/1 means lower/upper bound, return a vector of length `dimension` """ sign_ = 2 * ib - 1 assert sign_*2 == 1 if self.bounds is None or self.bounds[ib] is None: return array(dimension [sign_ * np.Inf]) res = []...	[ "def", "_get_bounds", "(", "self", ",", "ib", ",", "dimension", ")", ":", "sign_", "=", "2", "", "ib", "-", "1", "assert", "sign_", "*", "2", "==", "1", "if", "self", ".", "bounds", "is", "None", "or", "self", ".", "bounds", "[", "ib", "]", "...	39.923077	11.461538
def _mor_to_pobject(self, mo_ref): """Converts a MOR to a psphere object.""" kls = classmapper(mo_ref._type) new_object = kls(mo_ref, self) return new_object	[ "def", "_mor_to_pobject", "(", "self", ",", "mo_ref", ")", ":", "kls", "=", "classmapper", "(", "mo_ref", ".", "_type", ")", "new_object", "=", "kls", "(", "mo_ref", ",", "self", ")", "return", "new_object" ]	37	4.8
def _compute_mean(self, C, rup, dists, sites, imt): """ Returns the mean ground motion acceleration and velocity """ mean = (self._get_magnitude_scaling_term(C, rup.mag) + self._get_distance_scaling_term(C, rup.mag, dists.rrup) + self._get_site_amplificati...	[ "def", "_compute_mean", "(", "self", ",", "C", ",", "rup", ",", "dists", ",", "sites", ",", "imt", ")", ":", "mean", "=", "(", "self", ".", "_get_magnitude_scaling_term", "(", "C", ",", "rup", ".", "mag", ")", "+", "self", ".", "_get_distance_scaling_t...	43.315789	19.210526
def save_checkpoint(prefix, epoch, symbol, arg_params, aux_params): """Checkpoint the model data into file. Parameters ---------- prefix : str Prefix of model name. epoch : int The epoch number of the model. symbol : Symbol The input Symbol. arg_params : dict of str ...	[ "def", "save_checkpoint", "(", "prefix", ",", "epoch", ",", "symbol", ",", "arg_params", ",", "aux_params", ")", ":", "if", "symbol", "is", "not", "None", ":", "symbol", ".", "save", "(", "'%s-symbol.json'", "%", "prefix", ")", "save_dict", "=", "{", "("...	36.928571	20.428571
def fragment(self, value=None): """ Return or set the fragment (hash) :param string value: the new fragment to use :returns: string or new :class:`URL` instance """ if value is not None: return URL._mutate(self, fragment=value) return unicode_unquote(...	[ "def", "fragment", "(", "self", ",", "value", "=", "None", ")", ":", "if", "value", "is", "not", "None", ":", "return", "URL", ".", "_mutate", "(", "self", ",", "fragment", "=", "value", ")", "return", "unicode_unquote", "(", "self", ".", "_tuple", "...	33.2	11
def get_dtext(value): """ dtext = <printable ascii except \ [ ]> / obs-dtext obs-dtext = obs-NO-WS-CTL / quoted-pair We allow anything except the excluded characters, but if we find any ASCII other than the RFC defined printable ASCII an NonPrintableDefect is added to the token's defects list. ...	[ "def", "get_dtext", "(", "value", ")", ":", "ptext", ",", "value", ",", "had_qp", "=", "_get_ptext_to_endchars", "(", "value", ",", "'[]'", ")", "ptext", "=", "ValueTerminal", "(", "ptext", ",", "'ptext'", ")", "if", "had_qp", ":", "ptext", ".", "defects...	43.894737	21.105263
def drop(self, columns): """Drop 1 or more columns. Any column which does not exist in the DataFrame is skipped, i.e. not removed, without raising an exception. Unlike Pandas' drop, this is currently restricted to dropping columns. Parameters ---------- columns : str or...	[ "def", "drop", "(", "self", ",", "columns", ")", ":", "if", "isinstance", "(", "columns", ",", "str", ")", ":", "new_data", "=", "OrderedDict", "(", ")", "if", "columns", "not", "in", "self", ".", "_gather_column_names", "(", ")", ":", "raise", "KeyErr...	31.324324	19.756757
def uncluster_annotations(self, input_annotations, reverse_pipe): ''' Update the annotations hash provided by pplacer to include all representatives within each cluster Parameters ---------- input_annotations : hash Classifications for each representative seq...	[ "def", "uncluster_annotations", "(", "self", ",", "input_annotations", ",", "reverse_pipe", ")", ":", "output_annotations", "=", "{", "}", "for", "placed_alignment_file_path", ",", "clusters", "in", "self", ".", "seq_library", ".", "iteritems", "(", ")", ":", "i...	45.853659	30.536585
def getAllEventsByDay(request, fromDate, toDate, *, home=None): """ Return all the events (under home if given) for the dates given, grouped by day. :param request: Django request object :param fromDate: starting date (inclusive) :param toDate: finish date (inclusive) :param home: only incl...	[ "def", "getAllEventsByDay", "(", "request", ",", "fromDate", ",", "toDate", ",", "*", ",", "home", "=", "None", ")", ":", "qrys", "=", "[", "SimpleEventPage", ".", "events", "(", "request", ")", ".", "byDay", "(", "fromDate", ",", "toDate", ")", ",", ...	47.4	21.9
def subtype_group_id(self): """ str: Subtype Group ID """ self._validate() self._validate_for_subtype_group_id() parts = [] parts.append(self.election_type) parts.append(self.subtype) parts.append(self.date) return ".".join(parts)	[ "def", "subtype_group_id", "(", "self", ")", ":", "self", ".", "_validate", "(", ")", "self", ".", "_validate_for_subtype_group_id", "(", ")", "parts", "=", "[", "]", "parts", ".", "append", "(", "self", ".", "election_type", ")", "parts", ".", "append", ...	25	11
def decrypt_report(self, device_id, root, data, **kwargs): """Decrypt a buffer of report data on behalf of a device. Args: device_id (int): The id of the device that we should encrypt for root (int): The root key type that should be used to generate the report data (...	[ "def", "decrypt_report", "(", "self", ",", "device_id", ",", "root", ",", "data", ",", "", "", "kwargs", ")", ":", "report_key", "=", "self", ".", "_verify_derive_key", "(", "device_id", ",", "root", ",", "", "", "kwargs", ")", "try", ":", "from", ...	41.35	27.15
def make_wheelfile_inner(base_name, base_dir='.'): """Create a whl file from all the files under 'base_dir'. Places .dist-info at the end of the archive.""" zip_filename = base_name + ".whl" log.info("creating '%s' and adding '%s' to it", zip_filename, base_dir) # XXX support bz2, xz when availa...	[ "def", "make_wheelfile_inner", "(", "base_name", ",", "base_dir", "=", "'.'", ")", ":", "zip_filename", "=", "base_name", "+", "\".whl\"", "log", ".", "info", "(", "\"creating '%s' and adding '%s' to it\"", ",", "zip_filename", ",", "base_dir", ")", "# XXX support b...	28.621622	21.324324
def connect_reftrack_scenenode(self, refobj, scenenode): """Connect the given reftrack node with the given scene node :param refobj: the reftrack node to connect :type refobj: str :param scenenode: the jb_sceneNode to connect :type scenenode: str :returns: None :...	[ "def", "connect_reftrack_scenenode", "(", "self", ",", "refobj", ",", "scenenode", ")", ":", "conns", "=", "[", "(", "\"%s.scenenode\"", "%", "refobj", ",", "\"%s.reftrack\"", "%", "scenenode", ")", ",", "(", "\"%s.taskfile_id\"", "%", "scenenode", ",", "\"%s....	39.375	16.1875
def write_memory(self, session, space, offset, data, width, extended=False): """Write in an 8-bit, 16-bit, 32-bit, 64-bit value to the specified memory space and offset. Corresponds to viOut* functions of the VISA library. :param session: Unique logical identifier to a session. :param ...	[ "def", "write_memory", "(", "self", ",", "session", ",", "space", ",", "offset", ",", "data", ",", "width", ",", "extended", "=", "False", ")", ":", "if", "width", "==", "8", ":", "return", "self", ".", "out_8", "(", "session", ",", "space", ",", "...	49.875	23.833333
def get_date_822(): """return output of 822-date command""" cmd = '/bin/date' if not os.path.exists(cmd): raise ValueError('%s command does not exist.'%cmd) args = [cmd,'-R'] result = get_cmd_stdout(args).strip() result = normstr(result) return result	[ "def", "get_date_822", "(", ")", ":", "cmd", "=", "'/bin/date'", "if", "not", "os", ".", "path", ".", "exists", "(", "cmd", ")", ":", "raise", "ValueError", "(", "'%s command does not exist.'", "%", "cmd", ")", "args", "=", "[", "cmd", ",", "'-R'", "]"...	31	13.555556
def _BernII_to_Flavio_II(C, udlnu, parameters): """From BernII to FlavioII basis for charged current process semileptonic operators. `udlnu` should be of the form 'udl_enu_tau', 'cbl_munu_e' etc.""" p = parameters u = uflav[udlnu[0]] d = dflav[udlnu[1]] l = lflav[udlnu[4:udlnu.find('n')]] ...	[ "def", "_BernII_to_Flavio_II", "(", "C", ",", "udlnu", ",", "parameters", ")", ":", "p", "=", "parameters", "u", "=", "uflav", "[", "udlnu", "[", "0", "]", "]", "d", "=", "dflav", "[", "udlnu", "[", "1", "]", "]", "l", "=", "lflav", "[", "udlnu",...	45.130435	15.782609
def makerandCIJ_dir(n, k, seed=None): ''' This function generates a directed random network Parameters ---------- N : int number of vertices K : int number of edges seed : hashable, optional If None (default), use the np.random's global random state to generate rando...	[ "def", "makerandCIJ_dir", "(", "n", ",", "k", ",", "seed", "=", "None", ")", ":", "rng", "=", "get_rng", "(", "seed", ")", "ix", ",", "=", "np", ".", "where", "(", "np", ".", "logical_not", "(", "np", ".", "eye", "(", "n", ")", ")", ".", "fla...	24.933333	24.2
def refresh(self, movie): """ Try to refresh metadata of the movie through the datasource. """ if '_tmdbtv_id' in movie: refreshed = {'_Datasource': self.name} tvseries_id = movie['_tmdbtv_id'] series = self._tmdb_series(tvseries_id) alternatives =...	[ "def", "refresh", "(", "self", ",", "movie", ")", ":", "if", "'_tmdbtv_id'", "in", "movie", ":", "refreshed", "=", "{", "'_Datasource'", ":", "self", ".", "name", "}", "tvseries_id", "=", "movie", "[", "'_tmdbtv_id'", "]", "series", "=", "self", ".", "...	65.666667	28.433333
async def sinter(self, keys, *args): """ Return the intersection of sets specified by ``keys`` Cluster impl: Querry all keys, intersection and return result """ k = list_or_args(keys, args) res = await self.smembers(k[0]) for arg in k[1:]: ...	[ "async", "def", "sinter", "(", "self", ",", "keys", ",", "*", "args", ")", ":", "k", "=", "list_or_args", "(", "keys", ",", "args", ")", "res", "=", "await", "self", ".", "smembers", "(", "k", "[", "0", "]", ")", "for", "arg", "in", "k", "[", ...	25.714286	16.285714
def save(self): """Convert to JSON. Returns ------- `dict` JSON data. """ data = super().save() data['state_sizes'] = self.state_sizes data['reset_on_sentence_end'] = self.reset_on_sentence_end return data	[ "def", "save", "(", "self", ")", ":", "data", "=", "super", "(", ")", ".", "save", "(", ")", "data", "[", "'state_sizes'", "]", "=", "self", ".", "state_sizes", "data", "[", "'reset_on_sentence_end'", "]", "=", "self", ".", "reset_on_sentence_end", "retu...	23.25	18.583333
def _create_security_group(self, ingress): """Send a POST to spinnaker to create a new security group. Returns: boolean: True if created successfully """ template_kwargs = { 'app': self.app_name, 'env': self.env, 'region': self.region, ...	[ "def", "_create_security_group", "(", "self", ",", "ingress", ")", ":", "template_kwargs", "=", "{", "'app'", ":", "self", ".", "app_name", ",", "'env'", ":", "self", ".", "env", ",", "'region'", ":", "self", ".", "region", ",", "'vpc'", ":", "get_vpc_id...	32.428571	20.142857
def makedminfo(tabdesc, group_spec=None): """Creates a data manager information object. Create a data manager information dictionary outline from a table description. The resulting dictionary is a bare outline and is available for the purposes of further customising the data manager via the `group_spec` argume...	[ "def", "makedminfo", "(", "tabdesc", ",", "group_spec", "=", "None", ")", ":", "if", "group_spec", "is", "None", ":", "group_spec", "=", "{", "}", "class", "DMGroup", "(", "object", ")", ":", "\"\"\"\n Keep track of the columns, type and spec of each data manager...	28.894118	20.917647
def fmt_border(self, dimensions, t = 'm', border_style = 'utf8.a', border_formating = {}): """ Format table separator line. """ cells = [] for column in dimensions: cells.append(self.bchar('h', t, border_style) * (dimensions[column] + 2)) border = '{}{}{}'.fo...	[ "def", "fmt_border", "(", "self", ",", "dimensions", ",", "t", "=", "'m'", ",", "border_style", "=", "'utf8.a'", ",", "border_formating", "=", "{", "}", ")", ":", "cells", "=", "[", "]", "for", "column", "in", "dimensions", ":", "cells", ".", "append",...	48.6	29
def sync_tools( self, all_=False, destination=None, dry_run=False, public=False, source=None, stream=None, version=None): """Copy Juju tools into this model. :param bool all_: Copy all versions, not just the latest :param str destination: Path to local destination direct...	[ "def", "sync_tools", "(", "self", ",", "all_", "=", "False", ",", "destination", "=", "None", ",", "dry_run", "=", "False", ",", "public", "=", "False", ",", "source", "=", "None", ",", "stream", "=", "None", ",", "version", "=", "None", ")", ":", ...	44.375	21.875
def uniform_index(index,length): ''' uniform_index(0,3) uniform_index(-1,3) uniform_index(-4,3) uniform_index(-3,3) uniform_index(5,3) ''' if(index<0): rl = length+index if(rl<0): index = 0 else: index = rl elif(inde...	[ "def", "uniform_index", "(", "index", ",", "length", ")", ":", "if", "(", "index", "<", "0", ")", ":", "rl", "=", "length", "+", "index", "if", "(", "rl", "<", "0", ")", ":", "index", "=", "0", "else", ":", "index", "=", "rl", "elif", "(", "i...	20.315789	19.684211
def anyword_substring_search_inner(query_word, target_words): """ return True if ANY target_word matches a query_word """ for target_word in target_words: if(target_word.startswith(query_word)): return query_word return False	[ "def", "anyword_substring_search_inner", "(", "query_word", ",", "target_words", ")", ":", "for", "target_word", "in", "target_words", ":", "if", "(", "target_word", ".", "startswith", "(", "query_word", ")", ")", ":", "return", "query_word", "return", "False" ]	25.5	18.7
def _write_var_data_sparse(self, f, zVar, var, dataType, numElems, recVary, oneblock): ''' Writes a VVR and a VXR for this block of sparse data Parameters: f : file The open CDF file zVar : bool True if this ...	[ "def", "_write_var_data_sparse", "(", "self", ",", "f", ",", "zVar", ",", "var", ",", "dataType", ",", "numElems", ",", "recVary", ",", "oneblock", ")", ":", "rec_start", "=", "oneblock", "[", "0", "]", "rec_end", "=", "oneblock", "[", "1", "]", "indat...	34.716049	19.654321
def predict(self, temp_type): """ Transpile the predict method. Parameters ---------- :param temp_type: string The kind of export type (embedded, separated, exported). Returns ------- :return : string The transpiled predict method...	[ "def", "predict", "(", "self", ",", "temp_type", ")", ":", "# Exported:", "if", "temp_type", "==", "'exported'", ":", "temp", "=", "self", ".", "temp", "(", "'exported.class'", ")", "return", "temp", ".", "format", "(", "class_name", "=", "self", ".", "c...	29.227273	15.954545
def get_question_text(constant): """Find a constant by name and return its value. :param constant: The name of the constant to look for. :type constant: string :returns: The value of the constant or red error message. :rtype: string """ if constant in dir(safe.gui.tools.wizard.wizard_strin...	[ "def", "get_question_text", "(", "constant", ")", ":", "if", "constant", "in", "dir", "(", "safe", ".", "gui", ".", "tools", ".", "wizard", ".", "wizard_strings", ")", ":", "return", "getattr", "(", "safe", ".", "gui", ".", "tools", ".", "wizard", ".",...	34.538462	20
def stop(self, force=False, wait=False): """ Terminate all VMs in this cluster and delete its repository. :param bool force: remove cluster from storage even if not all nodes could be stopped. """ log.debug("Stopping cluster `%s` ...", self.name) failed = self...	[ "def", "stop", "(", "self", ",", "force", "=", "False", ",", "wait", "=", "False", ")", ":", "log", ".", "debug", "(", "\"Stopping cluster `%s` ...\"", ",", "self", ".", "name", ")", "failed", "=", "self", ".", "_stop_all_nodes", "(", "wait", ")", "if"...	36.576923	18.961538
def update_pos(pos_dict, start_key, nbr=2): "Update the `pos_dict` by moving all positions after `start_key` by `nbr`." for key,idx in pos_dict.items(): if str.lower(key) >= str.lower(start_key): pos_dict[key] += nbr return pos_dict	[ "def", "update_pos", "(", "pos_dict", ",", "start_key", ",", "nbr", "=", "2", ")", ":", "for", "key", ",", "idx", "in", "pos_dict", ".", "items", "(", ")", ":", "if", "str", ".", "lower", "(", "key", ")", ">=", "str", ".", "lower", "(", "start_ke...	49.6	19.6
def register(self, endpoint, scheme=None, handler=None, **kwargs): """Register a handler with this TChannel. This may be used as a decorator: .. code-block:: python app = TChannel(name='bar') @app.register("hello", "json") def hello_handler(request, respon...	[ "def", "register", "(", "self", ",", "endpoint", ",", "scheme", "=", "None", ",", "handler", "=", "None", ",", "", "", "kwargs", ")", ":", "assert", "endpoint", "is", "not", "None", ",", "\"endpoint is required\"", "if", "endpoint", "is", "TChannel", "...	35.328358	21.835821
def pfprint(item, end='\n', file=None): """Prints an item. :param item: The item to print :param end: String to append to the end of printed output :param file: File to which output is printed :rtype: None Example:: >>> from operator import add >>> fn = pfreduce(add, initial=...	[ "def", "pfprint", "(", "item", ",", "end", "=", "'\\n'", ",", "file", "=", "None", ")", ":", "# Can't just make sys.stdout the file argument's default value, because", "# then we would be capturing the stdout file descriptor, and then", "# doctest -- which works by redefining sys.std...	26.32	22.28
def _get_library_root_key_for_os_path(self, path): """Return library root key if path is within library root paths""" path = os.path.realpath(path) library_root_key = None for library_root_key, library_root_path in self._library_root_paths.items(): rel_path = os.path.relpath(...	[ "def", "_get_library_root_key_for_os_path", "(", "self", ",", "path", ")", ":", "path", "=", "os", ".", "path", ".", "realpath", "(", "path", ")", "library_root_key", "=", "None", "for", "library_root_key", ",", "library_root_path", "in", "self", ".", "_librar...	42.666667	13.166667
def url(ctx): """Prints the notebook url for this project. Uses [Caching](/references/polyaxon-cli/#caching) Example: \b ```bash $ polyaxon notebook url ``` """ user, project_name = get_project_or_local(ctx.obj.get('project')) try: response = PolyaxonClient().project.g...	[ "def", "url", "(", "ctx", ")", ":", "user", ",", "project_name", "=", "get_project_or_local", "(", "ctx", ".", "obj", ".", "get", "(", "'project'", ")", ")", "try", ":", "response", "=", "PolyaxonClient", "(", ")", ".", "project", ".", "get_project", "...	34.115385	28.076923
def bedpe(args): """ %prog bedpe bedfile Convert to bedpe format. Use --span to write another bed file that contain the span of the read pairs. """ from jcvi.assembly.coverage import bed_to_bedpe p = OptionParser(bedpe.__doc__) p.add_option("--span", default=False, action="store_true",...	[ "def", "bedpe", "(", "args", ")", ":", "from", "jcvi", ".", "assembly", ".", "coverage", "import", "bed_to_bedpe", "p", "=", "OptionParser", "(", "bedpe", ".", "__doc__", ")", "p", ".", "add_option", "(", "\"--span\"", ",", "default", "=", "False", ",", ...	35.142857	18.428571
def parse(self, rrstr): # type: (bytes) -> None ''' Parse a Rock Ridge Platform Dependent record out of a string. Parameters: rrstr - The string to parse the record out of. Returns: Nothing. ''' if self._initialized: raise pycdlibexc...	[ "def", "parse", "(", "self", ",", "rrstr", ")", ":", "# type: (bytes) -> None", "if", "self", ".", "_initialized", ":", "raise", "pycdlibexception", ".", "PyCdlibInternalError", "(", "'PD record already initialized!'", ")", "(", "su_len_unused", ",", "su_entry_version...	30	27.142857
def find_expectations(self, expectation_type=None, column=None, expectation_kwargs=None, discard_result_format_kwargs=True, discard_include_configs_kwargs=True, dis...	[ "def", "find_expectations", "(", "self", ",", "expectation_type", "=", "None", ",", "column", "=", "None", ",", "expectation_kwargs", "=", "None", ",", "discard_result_format_kwargs", "=", "True", ",", "discard_include_configs_kwargs", "=", "True", ",", "discard_cat...	47.617647	26.264706
def handleEvent(self, eventObj): """This method should be called every time through the main loop. Returns: False - if no event happens. True - if the user clicks the animation to start it playing. """ if not self.visible: return if n...	[ "def", "handleEvent", "(", "self", ",", "eventObj", ")", ":", "if", "not", "self", ".", "visible", ":", "return", "if", "not", "self", ".", "isEnabled", ":", "return", "False", "if", "eventObj", ".", "type", "!=", "MOUSEBUTTONDOWN", ":", "# The animation o...	32.833333	21.5
def save(df, path): """ Args: df (DataFlow): the DataFlow to serialize. path (str): output tfrecord file. """ if os.environ.get('TENSORPACK_COMPATIBLE_SERIALIZE', 'msgpack') == 'msgpack': def _dumps(dp): return dumps(dp) else: ...	[ "def", "save", "(", "df", ",", "path", ")", ":", "if", "os", ".", "environ", ".", "get", "(", "'TENSORPACK_COMPATIBLE_SERIALIZE'", ",", "'msgpack'", ")", "==", "'msgpack'", ":", "def", "_dumps", "(", "dp", ")", ":", "return", "dumps", "(", "dp", ")", ...	33.5	16.166667
def select_random_ports(n): """Selects and return n random ports that are available.""" ports = [] for i in xrange(n): sock = socket.socket() sock.bind(('', 0)) while sock.getsockname()[1] in _random_ports: sock.close() sock = socket.socket() sock....	[ "def", "select_random_ports", "(", "n", ")", ":", "ports", "=", "[", "]", "for", "i", "in", "xrange", "(", "n", ")", ":", "sock", "=", "socket", ".", "socket", "(", ")", "sock", ".", "bind", "(", "(", "''", ",", "0", ")", ")", "while", "sock", ...	30.117647	12.764706

def to_datetime(jdc): '''Return a datetime for the input floating point Julian Day Count''' year, month, day = gregorian.from_jd(jdc) # in jdc: 0.0 = noon, 0.5 = midnight # the 0.5 changes it to 0.0 = midnight, 0.5 = noon frac = (jdc + 0.5) % 1 hours = int(24 * frac) mfrac = frac * 24 - h...

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28.181818

21.818182

def mesh_nmasked(self): """ A 2D (masked) array of the number of masked pixels in each mesh. Only meshes included in the background estimation are included. The array is masked only if meshes were excluded. """ return self._make_2d_array( np.ma.count_masked(s...

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37.666667

17.888889

def delete_variant_by_id(cls, variant_id, **kwargs): """Delete Variant Delete an instance of Variant by its ID. This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async=True >>> thread = api.delete_variant_by_id(variant_id,...

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40.952381

19.619048

def NewDefaultAgency(self, **kwargs): """Create a new Agency object and make it the default agency for this Schedule""" agency = self._gtfs_factory.Agency(**kwargs) if not agency.agency_id: agency.agency_id = util.FindUniqueId(self._agencies) self._default_agency = agency self.SetDefaultAgency...

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48.25

13.875

def reply_to(self, message, text, **kwargs): """ Convenience function for `send_message(message.chat.id, text, reply_to_message_id=message.message_id, **kwargs)` """ return self.send_message(message.chat.id, text, reply_to_message_id=message.message_id, **kwargs)

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def _set(self, value): """Override setter, allow clearing cursor""" super(AttachmentsField, self)._set(value) self._cursor = None

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37.5

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def relative_datetime(self): """Return human-readable relative time string.""" now = datetime.now(timezone.utc) tense = "from now" if self.created_at > now else "ago" return "{0} {1}".format(humanize.naturaldelta(now - self.created_at), tense)

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54.2

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def get_extra_radiation(datetime_or_doy, solar_constant=1366.1, method='spencer', epoch_year=2014, **kwargs): """ Determine extraterrestrial radiation from day of year. Parameters ---------- datetime_or_doy : numeric, array, date, datetime, Timestamp, DatetimeIndex D...

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def perr(self, *args, **kwargs): """ Console to STERR """ kwargs['file'] = self.err self.print(*args, **kwargs) sys.stderr.flush()

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def collect_fields( ctx, # type: ExecutionContext runtime_type, # type: GraphQLObjectType selection_set, # type: SelectionSet fields, # type: DefaultOrderedDict prev_fragment_names, # type: Set[str] ): # type: (...) -> DefaultOrderedDict """ Given a selectionSet, adds all of the fie...

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34.067797

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def _add_initial_value(self, data_id, value, initial_dist=0.0, fringe=None, check_cutoff=None, no_call=None): """ Add initial values updating workflow, seen, and fringe. :param fringe: Heapq of closest available nodes. :type fringe: list[(float | i...

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34.307692

25.557692

def _remote_add(self): """Execute git remote add.""" self.repo.create_remote( 'origin', 'git@github.com:{username}/{repo}.git'.format( username=self.metadata.username, repo=self.metadata.name))

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def to_docstring(kwargs, lpad=''): """Reconstruct a docstring from keyword argument info. Basically reverses :func:`extract_kwargs`. Parameters ---------- kwargs: list Output from the extract_kwargs function lpad: str, optional Padding string (from the left). Returns -...

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25.972973

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def _merge(dts): """ merge multiple samples in one matrix """ df = pd.concat(dts) ma = df.pivot(index='isomir', columns='sample', values='counts') ma_mirna = ma ma = ma.fillna(0) ma_mirna['mirna'] = [m.split(":")[0] for m in ma.index.values] ma_mirna = ma_mirna.groupby(['mirna']).su...

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def shell(): "Open a shell" from gui.tools.debug import Shell shell = Shell() shell.show() return shell

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20.333333

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def frame_indexing(frame, multi_index, level_i, indexing_type='label'): """Index dataframe based on one level of MultiIndex. Arguments --------- frame : pandas.DataFrame The datafrme to select records from. multi_index : pandas.MultiIndex A pandas multiindex were one fo the levels i...

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def transmit(self, payload, **kwargs): """ Transmit content metadata items to the integrated channel. """ items_to_create, items_to_update, items_to_delete, transmission_map = self._partition_items(payload) self._prepare_items_for_delete(items_to_delete) prepared_items = ...

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52.886364

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def distance(self, physical_qubit1, physical_qubit2): """Returns the undirected distance between physical_qubit1 and physical_qubit2. Args: physical_qubit1 (int): A physical qubit physical_qubit2 (int): Another physical qubit Returns: int: The undirected dis...

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41.55

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async def vsetup(self, author): """Creates the voice client Args: author (discord.Member): The user that the voice ui will seek """ if self.vready: logger.warning("Attempt to init voice when already initialised") return if self.state != 'sta...

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38.733333

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def psffunc(self, *args, **kwargs): """Calculates a linescan psf""" if self.polychromatic: func = psfcalc.calculate_polychrome_linescan_psf else: func = psfcalc.calculate_linescan_psf return func(*args, **kwargs)

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37.428571

10.714286

def RobotFactory(path, parent=None): '''Return an instance of SuiteFile, ResourceFile, SuiteFolder Exactly which is returned depends on whether it's a file or folder, and if a file, the contents of the file. If there is a testcase table, this will return an instance of SuiteFile, otherwise it will ...

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30.181818

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def total(self, xbin1=1, xbin2=-2): """ Return the total yield and its associated statistical and systematic uncertainties. """ integral, stat_error = self.hist.integral( xbin1=xbin1, xbin2=xbin2, error=True) # sum systematics in quadrature ups = [0] ...

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36.416667

12.916667

def find_unique_repos(where): """ Search for repositories and deduplicate based on ``repo.fpath`` Args: where (str): path to search from Yields: Repository subclass """ repos = Dict() path_uuids = Dict() log.debug("find_unique_repos(%r)" % where) for repo in find_fi...

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27.464286

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def getContinuousSet(self, id_): """ Returns the ContinuousSet with the specified id, or raises a ContinuousSetNotFoundException otherwise. """ if id_ not in self._continuousSetIdMap: raise exceptions.ContinuousSetNotFoundException(id_) return self._continuous...

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40.75

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def find_parent_split(node, orientation): """ Find the first parent split relative to the given node according to the desired orientation """ if (node and node.orientation == orientation and len(node.children) > 1): return node if not node or node.type == "workspace": r...

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26.642857

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def _compute_heating_rates(self): '''Compute energy flux convergences to get heating rates in :math:`W/m^2`.''' self._compute_flux() self.heating_rate['Ts'] = -self._flux # Modify only the lowest model level self.heating_rate['Tatm'][..., -1, np.newaxis] = self._flux

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50.333333

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def HashBuffer(self, buf): """Updates underlying hashers with a given buffer. Args: buf: A byte buffer (string object) that is going to be fed to the hashers. """ for hasher in itervalues(self._hashers): hasher.update(buf) if self._progress: self._progress() self._bytes_r...

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27

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def b58decode(v): '''Decode a Base58 encoded string''' if not isinstance(v, str): v = v.decode('ascii') origlen = len(v) v = v.lstrip(alphabet[0]) newlen = len(v) acc = b58decode_int(v) result = [] while acc > 0: acc, mod = divmod(acc, 256) result.append(mod) ...

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20.444444

22.222222

def select(self, *column_names, **kwargs): ''' Select the provided column names from the model, do not return an entity, do not involve the rom session, just get the raw and/or processed column data from Redis. Keyword-only arguments: * *include_pk=False* - whether ...

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43.621622

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def makeGLMModel(model, coefs, threshold=.5): """ Create a custom GLM model using the given coefficients. Needs to be passed source model trained on the dataset to extract the dataset information from. :param model: source model, used for extracting dataset information :param c...

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def find_executable(name: str, flags=os.X_OK) -> List[str]: r"""Finds executable `name`. Similar to Unix ``which`` command. Returns list of zero or more full paths to `name`. """ result = [] extensions = [x for x in os.environ.get("PATHEXT", "").split(os.pathsep) if x] path = os.environ.ge...

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def list(self, **params): """ Retrieve all orders Returns all orders available to the user according to the parameters provided :calls: ``get /orders`` :param dict params: (optional) Search options. :return: List of dictionaries that support attriubte-style access, whic...

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def require(f): ''' The @require decorator, usable in an immutable class (see immutable), specifies that the following function is actually a validation check on the immutable class. These functions will appear as static members of the class and get called automatically when the relevant data change...

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def render_image(self, rgbobj, dst_x, dst_y): """Render the image represented by (rgbobj) at dst_x, dst_y in the pixel space. *** internal method-- do not use *** """ self.logger.debug("redraw surface=%s" % (self.surface)) if self.surface is None: return ...

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def prepare_logged(x, y): """ Transform `x` and `y` to a log scale while dealing with zeros. This function scales `x` and `y` such that the points that are zero in one array are set to the min of the other array. When plotting expression data, frequently one sample will have reads in a particu...

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def setErrorHandler(self,f,arg): """Register an error handler that will be called back as f(arg,msg,severity,reserved). @reserved is currently always None.""" libxml2mod.xmlParserCtxtSetErrorHandler(self._o,f,arg)

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def hex2rgb(h): """ Convert hex colors to RGB tuples Parameters ---------- h : str String hex color value >>> hex2rgb("#ff0033") '255,0,51' """ if not h.startswith('#') or len(h) != 7: raise ValueError("Does not look like a hex color: '{0}'".format(h)) return ',...

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def fasttagcount(sam, out, genemap, positional, minevidence, cb_histogram, cb_cutoff, subsample, parse_tags, gene_tags, umi_matrix): ''' Count up evidence for tagged molecules, this implementation assumes the alignment file is coordinate sorted ''' from pysam import AlignmentFile ...

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def what_task(self, token_id, presented_pronunciation, index, phonemes, phonemes_probability, warn=True, default=True): """Provide the prediction of the what task. This function is used to predict the probability of a given phoneme being reported at a given index for a given t...

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def fragment_fromstring(html, create_parent=False, guess_charset=False, parser=None): """Parses a single HTML element; it is an error if there is more than one element, or if anything but whitespace precedes or follows the element. If create_parent is true (or is a tag name) the...

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def get_bucket_type_props(self, bucket_type): """ Fetch bucket-type properties """ self._check_bucket_types(bucket_type) msg_code = riak.pb.messages.MSG_CODE_GET_BUCKET_TYPE_REQ codec = self._get_codec(msg_code) msg = codec.encode_get_bucket_type_props(bucket_type...

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def main(*argv): """ main driver of program """ try: # Inputs # adminUsername = argv[0] adminPassword = argv[1] siteURL = argv[2] groupTitle = argv[3] groupTags = argv[4] description = argv[5] access = argv[6] # Logic #...

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def encode(self, envelope, session, encoding=None, **kwargs): """ :meth:`.WMessengerOnionCoderLayerProto.encode` method implementation. :param envelope: original envelope :param session: original session :param encoding: encoding to use (default is 'utf-8') :param kwargs: additional arguments :return: WMe...

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def run(self): """ Run the database seeds. """ self.factory.register(User, self.users_factory) self.factory(User, 50).create()

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23

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def load(data, udf, data_dir, overwrite): """Load Ibis test data and build/upload UDFs""" con = make_ibis_client(ENV) # validate our environment before performing possibly expensive operations if not can_write_to_hdfs(con): raise IbisError('Failed to write to HDFS; check your settings') if ...

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def random(self, namespace=0): """ Returns query string for random page """ query = self.LIST.substitute( WIKI=self.uri, ENDPOINT=self.endpoint, LIST='random') query += "&rnlimit=1&rnnamespace=%d" % namespace emoji = [ u'\U...

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def show_hydrophobic(self): """Visualizes hydrophobic contacts.""" hydroph = self.plcomplex.hydrophobic_contacts if not len(hydroph.bs_ids) == 0: self.select_by_ids('Hydrophobic-P', hydroph.bs_ids, restrict=self.protname) self.select_by_ids('Hydrophobic-L', hydroph.lig_id...

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def increment(handler, increment, item_id, counter_name): """Increment a counter attribute atomically""" data = {'operation': 'increment_counter', 'id': item_id, 'counter_name': counter_name, 'increment': increment} handler.invoke(data)

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def exchange_declare(self, exchange, type, durable, auto_delete): """Declare an named exchange.""" return self.channel.exchange_declare(exchange=exchange, type=type, durable=durable, ...

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def _set_permissions(zip_file_info, extracted_path): """ Sets permissions on the extracted file by reading the ``external_attr`` property of given file info. Parameters ---------- zip_file_info : zipfile.ZipInfo Object containing information about a file within a zip archive extracted_...

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37.409091

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def delete_client(client_id, preserve_cache): """Delete all objects related to client @param client_id: ID of client user @param preserve_cache: Boolean, whether to delete the chrome profile folder or not """ if client_id in drivers: drivers.pop(client_id).quit() try: ...

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30.578947

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def get_access_tokens(self, authorization_code): """From the authorization code, get the "access token" and the "refresh token" from Box. Args: authorization_code (str). Authorisation code emitted by Box at the url provided by the function :func:`get_authorization_url`. Returns: ...

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35.923077

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def login_required_with_ajax(function=None, redirect_field_name=REDIRECT_FIELD_NAME): """ Decorator for views that checks that the user is logged in, redirecting to the log-in page if necessary, but returns a special response for ajax requests. See :meth:`eulcommon.djangoextras.auth.decorators.user...

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38.578947

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def load_data(self, filename, *args, **kwargs): """ load data from text file. :param filename: name of file to read :type filename: str :returns: data read from file using :func:`numpy.genfromtxt` :rtype: dict :raises: :exc:`~simkit.core.exceptions.UnnamedDataErr...

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48.023256

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def list_sessions(self, updated_since=None, max_results=100, skip=0, **kwargs): """List session IDs. List the Session IDs with pending messages in the queue where the state of the session has been updated since the timestamp provided. If no timestamp is provided, all will be returned. I...

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def search_definition(self, module, keyword, arg): """Search for a defintion with `keyword` `name` Search the module and its submodules.""" r = module.search_one(keyword, arg) if r is not None: return r for i in module.search('include'): modulename = i.arg...

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37.5

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def search(title=None, artist=None, artist_id=None, combined=None, description=None, style=None, mood=None, results=None, start=None, max_tempo=None, min_tempo=None, max_duration=None, min_duration=None, max_loudness=None, min_loudness=None, artist_max_familiarity=None, artist_min_famil...

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63.855556

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def p_delays_intnumber(self, p): 'delays : DELAY intnumber' p[0] = DelayStatement( IntConst(p[2], lineno=p.lineno(1)), lineno=p.lineno(1)) p.set_lineno(0, p.lineno(1))

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39.8

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async def outlook(self) -> dict: """Get allergen outlook.""" try: return await self._request( 'get', 'https://www.pollen.com/api/forecast/outlook') except RequestError as err: if '404' in str(err): raise InvalidZipError('No data returned fo...

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38.1

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def _get_bounds(self, ib, dimension): """ib == 0/1 means lower/upper bound, return a vector of length `dimension` """ sign_ = 2 * ib - 1 assert sign_**2 == 1 if self.bounds is None or self.bounds[ib] is None: return array(dimension * [sign_ * np.Inf]) res = []...

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39.923077

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def _mor_to_pobject(self, mo_ref): """Converts a MOR to a psphere object.""" kls = classmapper(mo_ref._type) new_object = kls(mo_ref, self) return new_object

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37

4.8

def _compute_mean(self, C, rup, dists, sites, imt): """ Returns the mean ground motion acceleration and velocity """ mean = (self._get_magnitude_scaling_term(C, rup.mag) + self._get_distance_scaling_term(C, rup.mag, dists.rrup) + self._get_site_amplificati...

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43.315789

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def save_checkpoint(prefix, epoch, symbol, arg_params, aux_params): """Checkpoint the model data into file. Parameters ---------- prefix : str Prefix of model name. epoch : int The epoch number of the model. symbol : Symbol The input Symbol. arg_params : dict of str ...

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36.928571

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def fragment(self, value=None): """ Return or set the fragment (hash) :param string value: the new fragment to use :returns: string or new :class:`URL` instance """ if value is not None: return URL._mutate(self, fragment=value) return unicode_unquote(...

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33.2

11

def get_dtext(value): """ dtext = <printable ascii except \ [ ]> / obs-dtext obs-dtext = obs-NO-WS-CTL / quoted-pair We allow anything except the excluded characters, but if we find any ASCII other than the RFC defined printable ASCII an NonPrintableDefect is added to the token's defects list. ...

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43.894737

21.105263

def drop(self, columns): """Drop 1 or more columns. Any column which does not exist in the DataFrame is skipped, i.e. not removed, without raising an exception. Unlike Pandas' drop, this is currently restricted to dropping columns. Parameters ---------- columns : str or...

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31.324324

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def uncluster_annotations(self, input_annotations, reverse_pipe): ''' Update the annotations hash provided by pplacer to include all representatives within each cluster Parameters ---------- input_annotations : hash Classifications for each representative seq...

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45.853659

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def getAllEventsByDay(request, fromDate, toDate, *, home=None): """ Return all the events (under home if given) for the dates given, grouped by day. :param request: Django request object :param fromDate: starting date (inclusive) :param toDate: finish date (inclusive) :param home: only incl...

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47.4

21.9

def subtype_group_id(self): """ str: Subtype Group ID """ self._validate() self._validate_for_subtype_group_id() parts = [] parts.append(self.election_type) parts.append(self.subtype) parts.append(self.date) return ".".join(parts)

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25

11

def decrypt_report(self, device_id, root, data, **kwargs): """Decrypt a buffer of report data on behalf of a device. Args: device_id (int): The id of the device that we should encrypt for root (int): The root key type that should be used to generate the report data (...

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41.35

27.15

def make_wheelfile_inner(base_name, base_dir='.'): """Create a whl file from all the files under 'base_dir'. Places .dist-info at the end of the archive.""" zip_filename = base_name + ".whl" log.info("creating '%s' and adding '%s' to it", zip_filename, base_dir) # XXX support bz2, xz when availa...

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28.621622

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def connect_reftrack_scenenode(self, refobj, scenenode): """Connect the given reftrack node with the given scene node :param refobj: the reftrack node to connect :type refobj: str :param scenenode: the jb_sceneNode to connect :type scenenode: str :returns: None :...

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39.375

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def write_memory(self, session, space, offset, data, width, extended=False): """Write in an 8-bit, 16-bit, 32-bit, 64-bit value to the specified memory space and offset. Corresponds to viOut* functions of the VISA library. :param session: Unique logical identifier to a session. :param ...

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49.875

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def get_date_822(): """return output of 822-date command""" cmd = '/bin/date' if not os.path.exists(cmd): raise ValueError('%s command does not exist.'%cmd) args = [cmd,'-R'] result = get_cmd_stdout(args).strip() result = normstr(result) return result

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def _BernII_to_Flavio_II(C, udlnu, parameters): """From BernII to FlavioII basis for charged current process semileptonic operators. `udlnu` should be of the form 'udl_enu_tau', 'cbl_munu_e' etc.""" p = parameters u = uflav[udlnu[0]] d = dflav[udlnu[1]] l = lflav[udlnu[4:udlnu.find('n')]] ...

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def makerandCIJ_dir(n, k, seed=None): ''' This function generates a directed random network Parameters ---------- N : int number of vertices K : int number of edges seed : hashable, optional If None (default), use the np.random's global random state to generate rando...

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def refresh(self, movie): """ Try to refresh metadata of the movie through the datasource. """ if '_tmdbtv_id' in movie: refreshed = {'_Datasource': self.name} tvseries_id = movie['_tmdbtv_id'] series = self._tmdb_series(tvseries_id) alternatives =...

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async def sinter(self, keys, *args): """ Return the intersection of sets specified by ``keys`` Cluster impl: Querry all keys, intersection and return result """ k = list_or_args(keys, args) res = await self.smembers(k[0]) for arg in k[1:]: ...

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def save(self): """Convert to JSON. Returns ------- `dict` JSON data. """ data = super().save() data['state_sizes'] = self.state_sizes data['reset_on_sentence_end'] = self.reset_on_sentence_end return data

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def _create_security_group(self, ingress): """Send a POST to spinnaker to create a new security group. Returns: boolean: True if created successfully """ template_kwargs = { 'app': self.app_name, 'env': self.env, 'region': self.region, ...

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def makedminfo(tabdesc, group_spec=None): """Creates a data manager information object. Create a data manager information dictionary outline from a table description. The resulting dictionary is a bare outline and is available for the purposes of further customising the data manager via the `group_spec` argume...

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def fmt_border(self, dimensions, t = 'm', border_style = 'utf8.a', border_formating = {}): """ Format table separator line. """ cells = [] for column in dimensions: cells.append(self.bchar('h', t, border_style) * (dimensions[column] + 2)) border = '{}{}{}'.fo...

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def sync_tools( self, all_=False, destination=None, dry_run=False, public=False, source=None, stream=None, version=None): """Copy Juju tools into this model. :param bool all_: Copy all versions, not just the latest :param str destination: Path to local destination direct...

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44.375

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def uniform_index(index,length): ''' uniform_index(0,3) uniform_index(-1,3) uniform_index(-4,3) uniform_index(-3,3) uniform_index(5,3) ''' if(index<0): rl = length+index if(rl<0): index = 0 else: index = rl elif(inde...

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def anyword_substring_search_inner(query_word, target_words): """ return True if ANY target_word matches a query_word """ for target_word in target_words: if(target_word.startswith(query_word)): return query_word return False

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25.5

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def _write_var_data_sparse(self, f, zVar, var, dataType, numElems, recVary, oneblock): ''' Writes a VVR and a VXR for this block of sparse data Parameters: f : file The open CDF file zVar : bool True if this ...

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def predict(self, temp_type): """ Transpile the predict method. Parameters ---------- :param temp_type: string The kind of export type (embedded, separated, exported). Returns ------- :return : string The transpiled predict method...

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def get_question_text(constant): """Find a constant by name and return its value. :param constant: The name of the constant to look for. :type constant: string :returns: The value of the constant or red error message. :rtype: string """ if constant in dir(safe.gui.tools.wizard.wizard_strin...

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def stop(self, force=False, wait=False): """ Terminate all VMs in this cluster and delete its repository. :param bool force: remove cluster from storage even if not all nodes could be stopped. """ log.debug("Stopping cluster `%s` ...", self.name) failed = self...

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36.576923

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def update_pos(pos_dict, start_key, nbr=2): "Update the `pos_dict` by moving all positions after `start_key` by `nbr`." for key,idx in pos_dict.items(): if str.lower(key) >= str.lower(start_key): pos_dict[key] += nbr return pos_dict

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49.6

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def register(self, endpoint, scheme=None, handler=None, **kwargs): """Register a handler with this TChannel. This may be used as a decorator: .. code-block:: python app = TChannel(name='bar') @app.register("hello", "json") def hello_handler(request, respon...

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def pfprint(item, end='\n', file=None): """Prints an item. :param item: The item to print :param end: String to append to the end of printed output :param file: File to which output is printed :rtype: None Example:: >>> from operator import add >>> fn = pfreduce(add, initial=...

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26.32

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def _get_library_root_key_for_os_path(self, path): """Return library root key if path is within library root paths""" path = os.path.realpath(path) library_root_key = None for library_root_key, library_root_path in self._library_root_paths.items(): rel_path = os.path.relpath(...

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42.666667

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def url(ctx): """Prints the notebook url for this project. Uses [Caching](/references/polyaxon-cli/#caching) Example: \b ```bash $ polyaxon notebook url ``` """ user, project_name = get_project_or_local(ctx.obj.get('project')) try: response = PolyaxonClient().project.g...

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def bedpe(args): """ %prog bedpe bedfile Convert to bedpe format. Use --span to write another bed file that contain the span of the read pairs. """ from jcvi.assembly.coverage import bed_to_bedpe p = OptionParser(bedpe.__doc__) p.add_option("--span", default=False, action="store_true",...

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35.142857

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def parse(self, rrstr): # type: (bytes) -> None ''' Parse a Rock Ridge Platform Dependent record out of a string. Parameters: rrstr - The string to parse the record out of. Returns: Nothing. ''' if self._initialized: raise pycdlibexc...

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def find_expectations(self, expectation_type=None, column=None, expectation_kwargs=None, discard_result_format_kwargs=True, discard_include_configs_kwargs=True, dis...

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47.617647

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def handleEvent(self, eventObj): """This method should be called every time through the main loop. Returns: False - if no event happens. True - if the user clicks the animation to start it playing. """ if not self.visible: return if n...

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32.833333

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def save(df, path): """ Args: df (DataFlow): the DataFlow to serialize. path (str): output tfrecord file. """ if os.environ.get('TENSORPACK_COMPATIBLE_SERIALIZE', 'msgpack') == 'msgpack': def _dumps(dp): return dumps(dp) else: ...

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33.5

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def select_random_ports(n): """Selects and return n random ports that are available.""" ports = [] for i in xrange(n): sock = socket.socket() sock.bind(('', 0)) while sock.getsockname()[1] in _random_ports: sock.close() sock = socket.socket() sock....

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30.117647

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